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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ARID1B-SNX9 (FusionGDB2 ID:6518)

Fusion Gene Summary for ARID1B-SNX9

check button Fusion gene summary
Fusion gene informationFusion gene name: ARID1B-SNX9
Fusion gene ID: 6518
HgeneTgene
Gene symbol

ARID1B

SNX9

Gene ID

57492

51429

Gene nameAT-rich interaction domain 1Bsorting nexin 9
Synonyms6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250RSDP1|SH3PX1|SH3PXD3A|WISP
Cytomap

6q25.3

6q25.3

Type of geneprotein-codingprotein-coding
DescriptionAT-rich interactive domain-containing protein 1BARID domain-containing protein 1BAT rich interactive domain 1B (SWI1-like)BRG1-associated factor 250bBRG1-binding protein ELD/OSA1ELD (eyelid)/OSA proteinsorting nexin-9SH3 and PX domain-containing protein 1SH3 and PX domain-containing protein 3AWiskott-Aldrich syndrome protein (WASP) interactor protein
Modification date2020032020200313
UniProtAcc

Q8NFD5

.
Ensembl transtripts involved in fusion geneENST00000350026, ENST00000346085, 
ENST00000367148, ENST00000275248, 
ENST00000478761, 		ENST00000392185, 
Fusion gene scores* DoF score27 X 18 X 14=680410 X 12 X 6=720
# samples 3113
** MAII scorelog2(31/6804*10)=-4.45604302038915
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(13/720*10)=-2.46948528330122
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ARID1B [Title/Abstract] AND SNX9 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointARID1B(157150555)-SNX9(158288579), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneSNX9

GO:0043547

positive regulation of GTPase activity

15703209

TgeneSNX9

GO:0045860

positive regulation of protein kinase activity

18388313

TgeneSNX9

GO:0051044

positive regulation of membrane protein ectodomain proteolysis

18353773

TgeneSNX9

GO:0060988

lipid tube assembly

17948057

TgeneSNX9

GO:0065003

protein-containing complex assembly

15703209

TgeneSNX9

GO:0097320

plasma membrane tubulation

18388313


check buttonFusion gene breakpoints across ARID1B (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SNX9 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-BH-A1F6-01AARID1Bchr6

157150555

+SNX9chr6

158288579

+
ChimerDB4BRCATCGA-BH-A1F6-01AARID1Bchr6

157150555

-SNX9chr6

158288579

+


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Fusion Gene ORF analysis for ARID1B-SNX9

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000350026ENST00000392185ARID1Bchr6

157150555

+SNX9chr6

158288579

+
In-frameENST00000346085ENST00000392185ARID1Bchr6

157150555

+SNX9chr6

158288579

+
In-frameENST00000367148ENST00000392185ARID1Bchr6

157150555

+SNX9chr6

158288579

+
In-frameENST00000275248ENST00000392185ARID1Bchr6

157150555

+SNX9chr6

158288579

+
intron-3CDSENST00000478761ENST00000392185ARID1Bchr6

157150555

+SNX9chr6

158288579

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000350026ARID1Bchr6157150555+ENST00000392185SNX9chr6158288579+57531738135131170
ENST00000346085ARID1Bchr6157150555+ENST00000392185SNX9chr6158288579+57531738135131170
ENST00000367148ARID1Bchr6157150555+ENST00000392185SNX9chr6158288579+57521737035121170
ENST00000275248ARID1Bchr6157150555+ENST00000392185SNX9chr6158288579+573017157734901137

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000350026ENST00000392185ARID1Bchr6157150555+SNX9chr6158288579+0.0010115880.99898845
ENST00000346085ENST00000392185ARID1Bchr6157150555+SNX9chr6158288579+0.0010115880.99898845
ENST00000367148ENST00000392185ARID1Bchr6157150555+SNX9chr6158288579+0.001005890.99899405
ENST00000275248ENST00000392185ARID1Bchr6157150555+SNX9chr6158288579+0.0011480220.998852

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Fusion Genomic Features for ARID1B-SNX9


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
ARID1Bchr6157150555+SNX9chr6158288578+4.91E-060.9999951
ARID1Bchr6157150555+SNX9chr6158288578+4.91E-060.9999951

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for ARID1B-SNX9


check button Go to

FGviewer for the breakpoints of chr6:157150555-chr6:158288579

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ARID1B

Q8NFD5

.
FUNCTION: Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Binds DNA non-specifically (PubMed:14982958, PubMed:15170388). {ECO:0000250|UniProtKB:E9Q4N7, ECO:0000269|PubMed:14982958, ECO:0000269|PubMed:15170388, ECO:0000303|PubMed:12672490, ECO:0000303|PubMed:22952240, ECO:0000303|PubMed:26601204}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220107_131579.02250.0Compositional biasNote=Gln-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220114_131579.02250.0Compositional biasNote=Poly-Gln
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220141_401579.02250.0Compositional biasNote=Gly-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2202_47579.02250.0Compositional biasNote=Ala-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220329_493579.02250.0Compositional biasNote=Ala-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+22035_57579.02250.0Compositional biasNote=Ser-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+22081_104579.02250.0Compositional biasNote=His-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219107_131579.02237.0Compositional biasNote=Gln-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219114_131579.02237.0Compositional biasNote=Poly-Gln
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219141_401579.02237.0Compositional biasNote=Gly-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2192_47579.02237.0Compositional biasNote=Ala-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219329_493579.02237.0Compositional biasNote=Ala-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+21935_57579.02237.0Compositional biasNote=Ser-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+21981_104579.02237.0Compositional biasNote=His-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220107_131579.02290.0Compositional biasNote=Gln-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220114_131579.02290.0Compositional biasNote=Poly-Gln
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220141_401579.02290.0Compositional biasNote=Gly-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2202_47579.02290.0Compositional biasNote=Ala-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220329_493579.02290.0Compositional biasNote=Ala-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+22035_57579.02290.0Compositional biasNote=Ser-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+22081_104579.02290.0Compositional biasNote=His-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220419_423579.02250.0MotifNote=LXXLL
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219419_423579.02237.0MotifNote=LXXLL
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220419_423579.02290.0MotifNote=LXXLL
TgeneSNX9chr6:157150555chr6:158288579ENST000003921850181_624.0596.0DomainSH3
TgeneSNX9chr6:157150555chr6:158288579ENST00000392185018250_3614.0596.0DomainPX
TgeneSNX9chr6:157150555chr6:158288579ENST00000392185018392_5954.0596.0DomainNote=BAR
TgeneSNX9chr6:157150555chr6:158288579ENST00000392185018201_2134.0596.0RegionNote=Critical for tubulation activity

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2201034_1037579.02250.0Compositional biasNote=Poly-Ser
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2201441_1444579.02250.0Compositional biasNote=Poly-Ser
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2201459_1597579.02250.0Compositional biasNote=Pro-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2201833_1836579.02250.0Compositional biasNote=Poly-Pro
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220574_633579.02250.0Compositional biasNote=Gln-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220684_771579.02250.0Compositional biasNote=Ser-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+220932_935579.02250.0Compositional biasNote=Poly-Ala
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2191034_1037579.02237.0Compositional biasNote=Poly-Ser
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2191441_1444579.02237.0Compositional biasNote=Poly-Ser
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2191459_1597579.02237.0Compositional biasNote=Pro-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2191833_1836579.02237.0Compositional biasNote=Poly-Pro
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219574_633579.02237.0Compositional biasNote=Gln-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219684_771579.02237.0Compositional biasNote=Ser-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+219932_935579.02237.0Compositional biasNote=Poly-Ala
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2201034_1037579.02290.0Compositional biasNote=Poly-Ser
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2201441_1444579.02290.0Compositional biasNote=Poly-Ser
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2201459_1597579.02290.0Compositional biasNote=Pro-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2201833_1836579.02290.0Compositional biasNote=Poly-Pro
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220574_633579.02290.0Compositional biasNote=Gln-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220684_771579.02290.0Compositional biasNote=Ser-rich
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+220932_935579.02290.0Compositional biasNote=Poly-Ala
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2201053_1144579.02250.0DomainARID
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2191053_1144579.02237.0DomainARID
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2201053_1144579.02290.0DomainARID
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2201358_1377579.02250.0MotifNuclear localization signal
HgeneARID1Bchr6:157150555chr6:158288579ENST00000346085+2202036_2040579.02250.0MotifNote=LXXLL
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2191358_1377579.02237.0MotifNuclear localization signal
HgeneARID1Bchr6:157150555chr6:158288579ENST00000350026+2192036_2040579.02237.0MotifNote=LXXLL
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2201358_1377579.02290.0MotifNuclear localization signal
HgeneARID1Bchr6:157150555chr6:158288579ENST00000367148+2202036_2040579.02290.0MotifNote=LXXLL


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Fusion Gene Sequence for ARID1B-SNX9


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000350026_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(transcript)=5753nt_BP=1738nt
CATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAG
CGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCCCGGGCTCGGCCATGGA
GACGGGGCTGCTCCCCAACCACAAACTGAAAACCGTTGGCGAAGCCCCCGCCGCGCCGCCCCACCAGCAGCACCACCACCACCACCATGC
CCACCACCACCACCACCATGCCCACCACCTCCACCACCACCACGCACTACAGCAGCAGCTAAACCAGTTCCAGCAGCAGCAGCAGCAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCCCATTTCCAACAACAACAGCTTGGGCGGCGCGGGCGGCGGCGCGCCTCAGCC
CGGCCCCGACATGGAGCAGCCGCAACATGGAGGCGCCAAGGACAGTGCTGCGGGCGGCCAGGCCGACCCCCCGGGCCCGCCGCTGCTGAG
CAAGCCGGGCGACGAGGACGACGCGCCGCCCAAGATGGGGGAGCCGGCGGGCGGCCGCTACGAGCACCCGGGCTTGGGCGCCCTGGGCAC
GCAGCAGCCGCCGGTCGCCGTGCCCGGGGGCGGCGGCGGCCCGGCGGCCGTCCCGGAGTTTAATAATTACTATGGCAGCGCTGCCCCTGC
GAGCGGCGGCCCCGGCGGCCGCGCTGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCCGGGATGGGGATGATGCACTCCGCCTC
CGCCGCCGCCGCCGGGGCCCCCGGCAGCATGGACCCCCTGCAGAACTCCCACGAAGGGTACCCCAACAGCCAGTGCAACCATTATCCGGG
CTACAGCCGGCCCGGCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCAGCGGAGGAGGAGGAGGAGGAGGAGGAGCAGG
AGCAGGAGGAGCAGGAGCGGGAGCTGTGGCGGCGGCGGCCGCGGCGGCGGCGGCAGCAGCAGGAGGCGGCGGCGGCGGCGGCTATGGGGG
CTCGTCCGCGGGGTACGGGGTGCTGAGCTCCCCCCGGCAGCAGGGCGGCGGCATGATGATGGGCCCCGGGGGCGGCGGGGCCGCGAGCCT
CAGCAAGGCGGCCGCCGGCTCGGCGGCGGGGGGCTTCCAGCGCTTCGCCGGCCAGAACCAGCACCCGTCGGGGGCCACCCCGACCCTCAA
TCAGCTGCTCACCTCGCCCAGCCCCATGATGCGGAGCTACGGCGGCAGCTACCCCGAGTACAGCAGCCCCAGCGCGCCGCCGCCGCCGCC
GTCGCAGCCCCAGTCCCAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAGCAGGCGGCCGCGGGCATGGGCTTGGGCAAGGACATGGG
CGCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCAT
GGGCAGATCCCAGGGCAGCCCAATGGATCCAATGGTGATGAAGAGACCTCAGTTGTATGGCATGGGCAGTAACCCTCATTCTCAGCCTCA
GCAGAGCAGTCCGTACCCAGGAGGTTCCTATGGCCCTCCAGGCCCACAGCGGTATCCAATTGGCATCCAGGGTCGGACTCCCGGGGCCAT
GGCCGGAATGCAGTACCCTCAGCAGCAGGCTCGGGTTATGTATGATTTTGCTGCTGAACCTGGAAATAATGAACTGACGGTTAATGAAGG
AGAAATCATCACAATCACAAATCCGGATGTAGGTGGAGGATGGCTGGAAGGAAGAAACATCAAAGGAGAACGAGGGCTGGTTCCCACAGA
CTACGTTGAAATTTTACCCAGTGATGGAAAAGATCAATTTTCTTGTGGAAATTCAGTGGCTGACCAAGCCTTCCTTGATTCTCTCTCAGC
CAGCACAGCTCAGGCCAGTTCGTCGGCTGCCAGCAACAATCACCAGGTTGGCAGTGGCAATGACCCCTGGTCAGCCTGGAGTGCCTCCAA
ATCTGGGAACTGGGAAAGCTCAGAAGGCTGGGGGGCCCAGCCAGAGGGGGCTGGAGCCCAAAGAAACACAAACACTCCCAACAACTGGGA
CACTGCCTTCGGCCACCCCCAGGCCTACCAAGGACCAGCAACTGGTGATGATGATGACTGGGATGAAGACTGGGATGGGCCCAAATCCTC
TTCCTACTTTAAGGATTCAGAGTCAGCTGATGCAGGCGGCGCTCAGCGAGGAAACAGTCGTGCTAGTTCCTCATCCATGAAAATTCCCCT
TAACAAATTTCCTGGATTTGCGAAACCTGGCACGGAACAGTATTTGTTGGCCAAACAACTAGCAAAACCCAAAGAGAAAATTCCCATCAT
TGTTGGAGATTATGGCCCAATGTGGGTTTATCCTACCTCTACTTTTGACTGTGTGGTAGCAGATCCCAGGAAAGGCTCCAAAATGTATGG
TCTAAAGAGCTACATCGAATATCAGCTAACACCTACTAACACTAATCGATCTGTAAACCACAGGTATAAGCACTTTGACTGGTTATATGA
GCGTCTCCTGGTTAAGTTTGGGTCAGCCATTCCAATCCCTTCTCTTCCAGACAAACAAGTCACAGGCCGCTTTGAAGAGGAATTTATCAA
AATGCGCATGGAGAGACTTCAGGCCTGGATGACCAGGATGTGTCGCCATCCAGTAATCTCAGAAAGTGAAGTTTTCCAGCAGTTCCTAAA
TTTCCGAGATGAGAAGGAATGGAAAACTGGAAAGAGGAAGGCCGAGAGAGATGAGCTGGCGGGAGTCATGATATTTTCCACCATGGAACC
AGAGGCACCTGACTTGGACTTAGTAGAAATAGAGCAGAAGTGCGAGGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGA
GCTGCTGACGGTGGGGCAGGAGCACTGGAAGCGCTGCACGGGCCCATTACCCAAGGAATATCAGAAGATAGGAAAGGCCTTGCAGAGTTT
GGCCACAGTGTTCAGTTCCAGTGGCTATCAAGGTGAAACAGATCTCAATGATGCAATAACAGAAGCAGGAAAGACTTATGAAGAAATTGC
CAGTCTCGTGGCAGAACAGCCAAAGAAAGATCTCCATTTCCTGATGGAATGTAATCACGAGTATAAAGGTTTTCTTGGCTGCTTCCCTGA
CATCATTGGCACTCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGACAAACTAGTTGCAACAAGTAAAATCACCCTACAAGACAAACA
GAACATGGTGAAGAGAGTCAGCATCATGTCTTACGCGTTGCAAGCTGAGATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAG
TGTCATCCGCCTGTACCTGGAGCAGCAAGTGCAATTTTACGAAACGATTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTTCCAGTGAT
GTAGGACAGAACGGGCCTTGAAGAGAATGCCGCGTGCTTTCTCCTGACTTGGGGCAATGCAATTCAAAACTTTTTTTCCCCTATTATTCA
GAAAAAAAAGGAAACAAAACCAAAAAGAAAGAGTTGCAAAAAACTGCATTTATTTTATTAGCCACCCTAAATGCGTCAGTTATTTAGGGA
TGGTCTTTTGTTCATTTCCGCATCCATTATTTAAACCAGTGGAAATTGTCTCTATTTTTGGAAAGTACTTAAAAGTTACCAGAATTTTCA
ATGGAAAATGAGGGGTTTCTCCCCACTGATATTTTACATAGAGTCATAATTTATATGTCTTATAAATTATAAGTCTTATATAATTTATAA
GTCTCCCACAATCTTCCAGTTCTTACCCAGTGTCAGATAATTAATTACTAATTACTTTCTTAAAAACATGAACTATGCCAGAATAAAAAA
TATCTATGTTTGTATATTTTTATAACTCCTTTCAGTCCTCTGGGGCTCCTGTCATTGAGGGAAGTCGTTACGCCTTTCACTGCCACAGTT
ACAGCTCAAGTGCTTACACTTCAAGAGGGAGGACGCTGGGGGCCCCTGGGGCTGCTAGTGCCATCGTGGTGTGTGGCAGGTGGGCCATCC
CATGTCCCTCCAGGGGGACCCCACAGCCTGGCAGATGAGCAGATACCCCTGGCCACCCATGTCCTCAGCGACATTTCTGATGTGCTGCTC
TTATGTGAGGACCAGTGCTTTCTCTCTTTGCACTTCCTTCCTAATCTTGGTTAAGGCATGTTTTATGCCATGAAGAATACATTAGAAGAA
TTGAGGGACTTTGTAGAGAATTTTGTGGCTTTGGTCCAACGGGTGAGTGGCTGTGCGGAGGCCTGTGTTCGGGAGGGCCTGGGAGAAGGA
GGGCACCCAGCACCCCGGCGTCTCTGGCCCTTTCTTATTCTTTGGCTCCTCATCCACCGTGATGAGAAGCGCTGCTGTGGCCACGGCACA
CTGCTTGGCTTGGGTGGCGGGTTCATGGCCAGTTGGTGTCATCAGCAAAGAGAAAAAGCACAGGTTAGCTCCCCATTAGATGGAAAAGTG
TAGGGACTGAGAAGGGCTGCAGCCTCAGCAGTGTACAGAGTCCCCGGCGCTCTGAGGTTGGAGAGAAAGAACAGACCAGCGCCCTTCCCG
ACTACATCCGAAACTTCACACAGGGTGTTTCTGAGCACCAGCACTTCCAGCGCTTCACTTAACGGCATAAAGCAAAACAGGACCTTGGCA
CACCGTCAGCTCGAACTCAACACTGGCAGCCACCGTCTCACCCCTGCGGAGGAGCGCTCCCGTCTCCCACAGGTGCCTTACCGCGTTCCC
TCCCGCTGCTTTCATTTTTCTGACCTAATAATTACGGGAAATGGAAAGTCTGGGCCAGCATCAATAAAATGACACCAAAAATAAGTAGAT
GAAATCAAATGAATATGAGAACATCTTGTTCTTCAATATCACGGGTTTTTGTTAATGTTTCATAAGTAATTCTCCCCACTTGATTTTTCT
TCTATAAAATCCCATAGAACAATGTTTATGCTATAGCCATTTAATATATGTACAAATTGTAAAGAATATGTATAAATGTTTTACACGAAT
GTAAGAGCATGTAGAAGCCAACATATAAATAAATTGTTTAAAAAAACTGTACAGTAAATTCTCAAAGCACTTTTTCAAAACACTTTTTGG
ACTTTGTGTGTGATTTTTGTTGTTGTTGTTAAGTACTTTTTATTCCAGCTGCTGAAAATGGTCCAGGTAATGAATTCTTCCCCAAATCCT
ATTTCTTCTGACATGAATTCATCATTTCAGTTCCGTAGGTCAGTGTTGCGGTCCGGGAAGCGTATCATAACCACCTGGGAGTTGCCAAGA
AGCAGACAGTCTCCCAGTGTCTGACTCTCGGATATTTGGATTTGACTGGTGTGAGGCAAAGTGAAAAAGGGATGGGGGAAATGGAGATGG
CACGGGCTCCTCAGAGCGTGGTAGCCGACTGTGAGGAAAAGCAGAGGGAATGTGAAAGAAAATAAGAGAATCCACGGGATTTGATGCCTG
GAAGATTCTCCTTCAAGTGGCAACATGGCATATATATCCTTCTCCGGGGAGTCACATGCACCATTTGGTTCTTAGATACGTTGATGTTTT

>In-frame_ENST00000350026_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(amino acids)=1170AA_start in transcript=1_stop in transcript=3513
MAHNAGAAAAAGTHSAKSGGSEAALKEGGSAAALSSSSSSSAAAAAASSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHA
HHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLS
KPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSAS
AAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGG
SSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP
SQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQ
QSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNIKGERGLVPTD
YVEILPSDGKDQFSCGNSVADQAFLDSLSASTAQASSSAASNNHQVGSGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWD
TAFGHPQAYQGPATGDDDDWDEDWDGPKSSSYFKDSESADAGGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQYLLAKQLAKPKEKIPII
VGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK
MRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKE
LLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPD
IIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM

--------------------------------------------------------------
>In-frame_ENST00000346085_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(transcript)=5753nt_BP=1738nt
CATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAG
CGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCCCGGGCTCGGCCATGGA
GACGGGGCTGCTCCCCAACCACAAACTGAAAACCGTTGGCGAAGCCCCCGCCGCGCCGCCCCACCAGCAGCACCACCACCACCACCATGC
CCACCACCACCACCACCATGCCCACCACCTCCACCACCACCACGCACTACAGCAGCAGCTAAACCAGTTCCAGCAGCAGCAGCAGCAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCCCATTTCCAACAACAACAGCTTGGGCGGCGCGGGCGGCGGCGCGCCTCAGCC
CGGCCCCGACATGGAGCAGCCGCAACATGGAGGCGCCAAGGACAGTGCTGCGGGCGGCCAGGCCGACCCCCCGGGCCCGCCGCTGCTGAG
CAAGCCGGGCGACGAGGACGACGCGCCGCCCAAGATGGGGGAGCCGGCGGGCGGCCGCTACGAGCACCCGGGCTTGGGCGCCCTGGGCAC
GCAGCAGCCGCCGGTCGCCGTGCCCGGGGGCGGCGGCGGCCCGGCGGCCGTCCCGGAGTTTAATAATTACTATGGCAGCGCTGCCCCTGC
GAGCGGCGGCCCCGGCGGCCGCGCTGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCCGGGATGGGGATGATGCACTCCGCCTC
CGCCGCCGCCGCCGGGGCCCCCGGCAGCATGGACCCCCTGCAGAACTCCCACGAAGGGTACCCCAACAGCCAGTGCAACCATTATCCGGG
CTACAGCCGGCCCGGCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCAGCGGAGGAGGAGGAGGAGGAGGAGGAGCAGG
AGCAGGAGGAGCAGGAGCGGGAGCTGTGGCGGCGGCGGCCGCGGCGGCGGCGGCAGCAGCAGGAGGCGGCGGCGGCGGCGGCTATGGGGG
CTCGTCCGCGGGGTACGGGGTGCTGAGCTCCCCCCGGCAGCAGGGCGGCGGCATGATGATGGGCCCCGGGGGCGGCGGGGCCGCGAGCCT
CAGCAAGGCGGCCGCCGGCTCGGCGGCGGGGGGCTTCCAGCGCTTCGCCGGCCAGAACCAGCACCCGTCGGGGGCCACCCCGACCCTCAA
TCAGCTGCTCACCTCGCCCAGCCCCATGATGCGGAGCTACGGCGGCAGCTACCCCGAGTACAGCAGCCCCAGCGCGCCGCCGCCGCCGCC
GTCGCAGCCCCAGTCCCAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAGCAGGCGGCCGCGGGCATGGGCTTGGGCAAGGACATGGG
CGCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCAT
GGGCAGATCCCAGGGCAGCCCAATGGATCCAATGGTGATGAAGAGACCTCAGTTGTATGGCATGGGCAGTAACCCTCATTCTCAGCCTCA
GCAGAGCAGTCCGTACCCAGGAGGTTCCTATGGCCCTCCAGGCCCACAGCGGTATCCAATTGGCATCCAGGGTCGGACTCCCGGGGCCAT
GGCCGGAATGCAGTACCCTCAGCAGCAGGCTCGGGTTATGTATGATTTTGCTGCTGAACCTGGAAATAATGAACTGACGGTTAATGAAGG
AGAAATCATCACAATCACAAATCCGGATGTAGGTGGAGGATGGCTGGAAGGAAGAAACATCAAAGGAGAACGAGGGCTGGTTCCCACAGA
CTACGTTGAAATTTTACCCAGTGATGGAAAAGATCAATTTTCTTGTGGAAATTCAGTGGCTGACCAAGCCTTCCTTGATTCTCTCTCAGC
CAGCACAGCTCAGGCCAGTTCGTCGGCTGCCAGCAACAATCACCAGGTTGGCAGTGGCAATGACCCCTGGTCAGCCTGGAGTGCCTCCAA
ATCTGGGAACTGGGAAAGCTCAGAAGGCTGGGGGGCCCAGCCAGAGGGGGCTGGAGCCCAAAGAAACACAAACACTCCCAACAACTGGGA
CACTGCCTTCGGCCACCCCCAGGCCTACCAAGGACCAGCAACTGGTGATGATGATGACTGGGATGAAGACTGGGATGGGCCCAAATCCTC
TTCCTACTTTAAGGATTCAGAGTCAGCTGATGCAGGCGGCGCTCAGCGAGGAAACAGTCGTGCTAGTTCCTCATCCATGAAAATTCCCCT
TAACAAATTTCCTGGATTTGCGAAACCTGGCACGGAACAGTATTTGTTGGCCAAACAACTAGCAAAACCCAAAGAGAAAATTCCCATCAT
TGTTGGAGATTATGGCCCAATGTGGGTTTATCCTACCTCTACTTTTGACTGTGTGGTAGCAGATCCCAGGAAAGGCTCCAAAATGTATGG
TCTAAAGAGCTACATCGAATATCAGCTAACACCTACTAACACTAATCGATCTGTAAACCACAGGTATAAGCACTTTGACTGGTTATATGA
GCGTCTCCTGGTTAAGTTTGGGTCAGCCATTCCAATCCCTTCTCTTCCAGACAAACAAGTCACAGGCCGCTTTGAAGAGGAATTTATCAA
AATGCGCATGGAGAGACTTCAGGCCTGGATGACCAGGATGTGTCGCCATCCAGTAATCTCAGAAAGTGAAGTTTTCCAGCAGTTCCTAAA
TTTCCGAGATGAGAAGGAATGGAAAACTGGAAAGAGGAAGGCCGAGAGAGATGAGCTGGCGGGAGTCATGATATTTTCCACCATGGAACC
AGAGGCACCTGACTTGGACTTAGTAGAAATAGAGCAGAAGTGCGAGGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGA
GCTGCTGACGGTGGGGCAGGAGCACTGGAAGCGCTGCACGGGCCCATTACCCAAGGAATATCAGAAGATAGGAAAGGCCTTGCAGAGTTT
GGCCACAGTGTTCAGTTCCAGTGGCTATCAAGGTGAAACAGATCTCAATGATGCAATAACAGAAGCAGGAAAGACTTATGAAGAAATTGC
CAGTCTCGTGGCAGAACAGCCAAAGAAAGATCTCCATTTCCTGATGGAATGTAATCACGAGTATAAAGGTTTTCTTGGCTGCTTCCCTGA
CATCATTGGCACTCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGACAAACTAGTTGCAACAAGTAAAATCACCCTACAAGACAAACA
GAACATGGTGAAGAGAGTCAGCATCATGTCTTACGCGTTGCAAGCTGAGATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAG
TGTCATCCGCCTGTACCTGGAGCAGCAAGTGCAATTTTACGAAACGATTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTTCCAGTGAT
GTAGGACAGAACGGGCCTTGAAGAGAATGCCGCGTGCTTTCTCCTGACTTGGGGCAATGCAATTCAAAACTTTTTTTCCCCTATTATTCA
GAAAAAAAAGGAAACAAAACCAAAAAGAAAGAGTTGCAAAAAACTGCATTTATTTTATTAGCCACCCTAAATGCGTCAGTTATTTAGGGA
TGGTCTTTTGTTCATTTCCGCATCCATTATTTAAACCAGTGGAAATTGTCTCTATTTTTGGAAAGTACTTAAAAGTTACCAGAATTTTCA
ATGGAAAATGAGGGGTTTCTCCCCACTGATATTTTACATAGAGTCATAATTTATATGTCTTATAAATTATAAGTCTTATATAATTTATAA
GTCTCCCACAATCTTCCAGTTCTTACCCAGTGTCAGATAATTAATTACTAATTACTTTCTTAAAAACATGAACTATGCCAGAATAAAAAA
TATCTATGTTTGTATATTTTTATAACTCCTTTCAGTCCTCTGGGGCTCCTGTCATTGAGGGAAGTCGTTACGCCTTTCACTGCCACAGTT
ACAGCTCAAGTGCTTACACTTCAAGAGGGAGGACGCTGGGGGCCCCTGGGGCTGCTAGTGCCATCGTGGTGTGTGGCAGGTGGGCCATCC
CATGTCCCTCCAGGGGGACCCCACAGCCTGGCAGATGAGCAGATACCCCTGGCCACCCATGTCCTCAGCGACATTTCTGATGTGCTGCTC
TTATGTGAGGACCAGTGCTTTCTCTCTTTGCACTTCCTTCCTAATCTTGGTTAAGGCATGTTTTATGCCATGAAGAATACATTAGAAGAA
TTGAGGGACTTTGTAGAGAATTTTGTGGCTTTGGTCCAACGGGTGAGTGGCTGTGCGGAGGCCTGTGTTCGGGAGGGCCTGGGAGAAGGA
GGGCACCCAGCACCCCGGCGTCTCTGGCCCTTTCTTATTCTTTGGCTCCTCATCCACCGTGATGAGAAGCGCTGCTGTGGCCACGGCACA
CTGCTTGGCTTGGGTGGCGGGTTCATGGCCAGTTGGTGTCATCAGCAAAGAGAAAAAGCACAGGTTAGCTCCCCATTAGATGGAAAAGTG
TAGGGACTGAGAAGGGCTGCAGCCTCAGCAGTGTACAGAGTCCCCGGCGCTCTGAGGTTGGAGAGAAAGAACAGACCAGCGCCCTTCCCG
ACTACATCCGAAACTTCACACAGGGTGTTTCTGAGCACCAGCACTTCCAGCGCTTCACTTAACGGCATAAAGCAAAACAGGACCTTGGCA
CACCGTCAGCTCGAACTCAACACTGGCAGCCACCGTCTCACCCCTGCGGAGGAGCGCTCCCGTCTCCCACAGGTGCCTTACCGCGTTCCC
TCCCGCTGCTTTCATTTTTCTGACCTAATAATTACGGGAAATGGAAAGTCTGGGCCAGCATCAATAAAATGACACCAAAAATAAGTAGAT
GAAATCAAATGAATATGAGAACATCTTGTTCTTCAATATCACGGGTTTTTGTTAATGTTTCATAAGTAATTCTCCCCACTTGATTTTTCT
TCTATAAAATCCCATAGAACAATGTTTATGCTATAGCCATTTAATATATGTACAAATTGTAAAGAATATGTATAAATGTTTTACACGAAT
GTAAGAGCATGTAGAAGCCAACATATAAATAAATTGTTTAAAAAAACTGTACAGTAAATTCTCAAAGCACTTTTTCAAAACACTTTTTGG
ACTTTGTGTGTGATTTTTGTTGTTGTTGTTAAGTACTTTTTATTCCAGCTGCTGAAAATGGTCCAGGTAATGAATTCTTCCCCAAATCCT
ATTTCTTCTGACATGAATTCATCATTTCAGTTCCGTAGGTCAGTGTTGCGGTCCGGGAAGCGTATCATAACCACCTGGGAGTTGCCAAGA
AGCAGACAGTCTCCCAGTGTCTGACTCTCGGATATTTGGATTTGACTGGTGTGAGGCAAAGTGAAAAAGGGATGGGGGAAATGGAGATGG
CACGGGCTCCTCAGAGCGTGGTAGCCGACTGTGAGGAAAAGCAGAGGGAATGTGAAAGAAAATAAGAGAATCCACGGGATTTGATGCCTG
GAAGATTCTCCTTCAAGTGGCAACATGGCATATATATCCTTCTCCGGGGAGTCACATGCACCATTTGGTTCTTAGATACGTTGATGTTTT

>In-frame_ENST00000346085_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(amino acids)=1170AA_start in transcript=1_stop in transcript=3513
MAHNAGAAAAAGTHSAKSGGSEAALKEGGSAAALSSSSSSSAAAAAASSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHA
HHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLS
KPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSAS
AAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGG
SSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP
SQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQ
QSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNIKGERGLVPTD
YVEILPSDGKDQFSCGNSVADQAFLDSLSASTAQASSSAASNNHQVGSGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWD
TAFGHPQAYQGPATGDDDDWDEDWDGPKSSSYFKDSESADAGGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQYLLAKQLAKPKEKIPII
VGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK
MRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKE
LLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPD
IIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM

--------------------------------------------------------------
>In-frame_ENST00000367148_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(transcript)=5752nt_BP=1737nt
ATGGCCCATAACGCGGGCGCCGCGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAGC
GCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCCCGGGCTCGGCCATGGAG
ACGGGGCTGCTCCCCAACCACAAACTGAAAACCGTTGGCGAAGCCCCCGCCGCGCCGCCCCACCAGCAGCACCACCACCACCACCATGCC
CACCACCACCACCACCATGCCCACCACCTCCACCACCACCACGCACTACAGCAGCAGCTAAACCAGTTCCAGCAGCAGCAGCAGCAGCAG
CAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCCCATTTCCAACAACAACAGCTTGGGCGGCGCGGGCGGCGGCGCGCCTCAGCCC
GGCCCCGACATGGAGCAGCCGCAACATGGAGGCGCCAAGGACAGTGCTGCGGGCGGCCAGGCCGACCCCCCGGGCCCGCCGCTGCTGAGC
AAGCCGGGCGACGAGGACGACGCGCCGCCCAAGATGGGGGAGCCGGCGGGCGGCCGCTACGAGCACCCGGGCTTGGGCGCCCTGGGCACG
CAGCAGCCGCCGGTCGCCGTGCCCGGGGGCGGCGGCGGCCCGGCGGCCGTCCCGGAGTTTAATAATTACTATGGCAGCGCTGCCCCTGCG
AGCGGCGGCCCCGGCGGCCGCGCTGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCCGGGATGGGGATGATGCACTCCGCCTCC
GCCGCCGCCGCCGGGGCCCCCGGCAGCATGGACCCCCTGCAGAACTCCCACGAAGGGTACCCCAACAGCCAGTGCAACCATTATCCGGGC
TACAGCCGGCCCGGCGCGGGCGGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCAGCGGAGGAGGAGGAGGAGGAGGAGGAGCAGGA
GCAGGAGGAGCAGGAGCGGGAGCTGTGGCGGCGGCGGCCGCGGCGGCGGCGGCAGCAGCAGGAGGCGGCGGCGGCGGCGGCTATGGGGGC
TCGTCCGCGGGGTACGGGGTGCTGAGCTCCCCCCGGCAGCAGGGCGGCGGCATGATGATGGGCCCCGGGGGCGGCGGGGCCGCGAGCCTC
AGCAAGGCGGCCGCCGGCTCGGCGGCGGGGGGCTTCCAGCGCTTCGCCGGCCAGAACCAGCACCCGTCGGGGGCCACCCCGACCCTCAAT
CAGCTGCTCACCTCGCCCAGCCCCATGATGCGGAGCTACGGCGGCAGCTACCCCGAGTACAGCAGCCCCAGCGCGCCGCCGCCGCCGCCG
TCGCAGCCCCAGTCCCAGGCGGCGGCGGCGGGGGCGGCGGCGGGCGGCCAGCAGGCGGCCGCGGGCATGGGCTTGGGCAAGGACATGGGC
GCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCATG
GGCAGATCCCAGGGCAGCCCAATGGATCCAATGGTGATGAAGAGACCTCAGTTGTATGGCATGGGCAGTAACCCTCATTCTCAGCCTCAG
CAGAGCAGTCCGTACCCAGGAGGTTCCTATGGCCCTCCAGGCCCACAGCGGTATCCAATTGGCATCCAGGGTCGGACTCCCGGGGCCATG
GCCGGAATGCAGTACCCTCAGCAGCAGGCTCGGGTTATGTATGATTTTGCTGCTGAACCTGGAAATAATGAACTGACGGTTAATGAAGGA
GAAATCATCACAATCACAAATCCGGATGTAGGTGGAGGATGGCTGGAAGGAAGAAACATCAAAGGAGAACGAGGGCTGGTTCCCACAGAC
TACGTTGAAATTTTACCCAGTGATGGAAAAGATCAATTTTCTTGTGGAAATTCAGTGGCTGACCAAGCCTTCCTTGATTCTCTCTCAGCC
AGCACAGCTCAGGCCAGTTCGTCGGCTGCCAGCAACAATCACCAGGTTGGCAGTGGCAATGACCCCTGGTCAGCCTGGAGTGCCTCCAAA
TCTGGGAACTGGGAAAGCTCAGAAGGCTGGGGGGCCCAGCCAGAGGGGGCTGGAGCCCAAAGAAACACAAACACTCCCAACAACTGGGAC
ACTGCCTTCGGCCACCCCCAGGCCTACCAAGGACCAGCAACTGGTGATGATGATGACTGGGATGAAGACTGGGATGGGCCCAAATCCTCT
TCCTACTTTAAGGATTCAGAGTCAGCTGATGCAGGCGGCGCTCAGCGAGGAAACAGTCGTGCTAGTTCCTCATCCATGAAAATTCCCCTT
AACAAATTTCCTGGATTTGCGAAACCTGGCACGGAACAGTATTTGTTGGCCAAACAACTAGCAAAACCCAAAGAGAAAATTCCCATCATT
GTTGGAGATTATGGCCCAATGTGGGTTTATCCTACCTCTACTTTTGACTGTGTGGTAGCAGATCCCAGGAAAGGCTCCAAAATGTATGGT
CTAAAGAGCTACATCGAATATCAGCTAACACCTACTAACACTAATCGATCTGTAAACCACAGGTATAAGCACTTTGACTGGTTATATGAG
CGTCTCCTGGTTAAGTTTGGGTCAGCCATTCCAATCCCTTCTCTTCCAGACAAACAAGTCACAGGCCGCTTTGAAGAGGAATTTATCAAA
ATGCGCATGGAGAGACTTCAGGCCTGGATGACCAGGATGTGTCGCCATCCAGTAATCTCAGAAAGTGAAGTTTTCCAGCAGTTCCTAAAT
TTCCGAGATGAGAAGGAATGGAAAACTGGAAAGAGGAAGGCCGAGAGAGATGAGCTGGCGGGAGTCATGATATTTTCCACCATGGAACCA
GAGGCACCTGACTTGGACTTAGTAGAAATAGAGCAGAAGTGCGAGGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAG
CTGCTGACGGTGGGGCAGGAGCACTGGAAGCGCTGCACGGGCCCATTACCCAAGGAATATCAGAAGATAGGAAAGGCCTTGCAGAGTTTG
GCCACAGTGTTCAGTTCCAGTGGCTATCAAGGTGAAACAGATCTCAATGATGCAATAACAGAAGCAGGAAAGACTTATGAAGAAATTGCC
AGTCTCGTGGCAGAACAGCCAAAGAAAGATCTCCATTTCCTGATGGAATGTAATCACGAGTATAAAGGTTTTCTTGGCTGCTTCCCTGAC
ATCATTGGCACTCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGACAAACTAGTTGCAACAAGTAAAATCACCCTACAAGACAAACAG
AACATGGTGAAGAGAGTCAGCATCATGTCTTACGCGTTGCAAGCTGAGATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAGT
GTCATCCGCCTGTACCTGGAGCAGCAAGTGCAATTTTACGAAACGATTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTTCCAGTGATG
TAGGACAGAACGGGCCTTGAAGAGAATGCCGCGTGCTTTCTCCTGACTTGGGGCAATGCAATTCAAAACTTTTTTTCCCCTATTATTCAG
AAAAAAAAGGAAACAAAACCAAAAAGAAAGAGTTGCAAAAAACTGCATTTATTTTATTAGCCACCCTAAATGCGTCAGTTATTTAGGGAT
GGTCTTTTGTTCATTTCCGCATCCATTATTTAAACCAGTGGAAATTGTCTCTATTTTTGGAAAGTACTTAAAAGTTACCAGAATTTTCAA
TGGAAAATGAGGGGTTTCTCCCCACTGATATTTTACATAGAGTCATAATTTATATGTCTTATAAATTATAAGTCTTATATAATTTATAAG
TCTCCCACAATCTTCCAGTTCTTACCCAGTGTCAGATAATTAATTACTAATTACTTTCTTAAAAACATGAACTATGCCAGAATAAAAAAT
ATCTATGTTTGTATATTTTTATAACTCCTTTCAGTCCTCTGGGGCTCCTGTCATTGAGGGAAGTCGTTACGCCTTTCACTGCCACAGTTA
CAGCTCAAGTGCTTACACTTCAAGAGGGAGGACGCTGGGGGCCCCTGGGGCTGCTAGTGCCATCGTGGTGTGTGGCAGGTGGGCCATCCC
ATGTCCCTCCAGGGGGACCCCACAGCCTGGCAGATGAGCAGATACCCCTGGCCACCCATGTCCTCAGCGACATTTCTGATGTGCTGCTCT
TATGTGAGGACCAGTGCTTTCTCTCTTTGCACTTCCTTCCTAATCTTGGTTAAGGCATGTTTTATGCCATGAAGAATACATTAGAAGAAT
TGAGGGACTTTGTAGAGAATTTTGTGGCTTTGGTCCAACGGGTGAGTGGCTGTGCGGAGGCCTGTGTTCGGGAGGGCCTGGGAGAAGGAG
GGCACCCAGCACCCCGGCGTCTCTGGCCCTTTCTTATTCTTTGGCTCCTCATCCACCGTGATGAGAAGCGCTGCTGTGGCCACGGCACAC
TGCTTGGCTTGGGTGGCGGGTTCATGGCCAGTTGGTGTCATCAGCAAAGAGAAAAAGCACAGGTTAGCTCCCCATTAGATGGAAAAGTGT
AGGGACTGAGAAGGGCTGCAGCCTCAGCAGTGTACAGAGTCCCCGGCGCTCTGAGGTTGGAGAGAAAGAACAGACCAGCGCCCTTCCCGA
CTACATCCGAAACTTCACACAGGGTGTTTCTGAGCACCAGCACTTCCAGCGCTTCACTTAACGGCATAAAGCAAAACAGGACCTTGGCAC
ACCGTCAGCTCGAACTCAACACTGGCAGCCACCGTCTCACCCCTGCGGAGGAGCGCTCCCGTCTCCCACAGGTGCCTTACCGCGTTCCCT
CCCGCTGCTTTCATTTTTCTGACCTAATAATTACGGGAAATGGAAAGTCTGGGCCAGCATCAATAAAATGACACCAAAAATAAGTAGATG
AAATCAAATGAATATGAGAACATCTTGTTCTTCAATATCACGGGTTTTTGTTAATGTTTCATAAGTAATTCTCCCCACTTGATTTTTCTT
CTATAAAATCCCATAGAACAATGTTTATGCTATAGCCATTTAATATATGTACAAATTGTAAAGAATATGTATAAATGTTTTACACGAATG
TAAGAGCATGTAGAAGCCAACATATAAATAAATTGTTTAAAAAAACTGTACAGTAAATTCTCAAAGCACTTTTTCAAAACACTTTTTGGA
CTTTGTGTGTGATTTTTGTTGTTGTTGTTAAGTACTTTTTATTCCAGCTGCTGAAAATGGTCCAGGTAATGAATTCTTCCCCAAATCCTA
TTTCTTCTGACATGAATTCATCATTTCAGTTCCGTAGGTCAGTGTTGCGGTCCGGGAAGCGTATCATAACCACCTGGGAGTTGCCAAGAA
GCAGACAGTCTCCCAGTGTCTGACTCTCGGATATTTGGATTTGACTGGTGTGAGGCAAAGTGAAAAAGGGATGGGGGAAATGGAGATGGC
ACGGGCTCCTCAGAGCGTGGTAGCCGACTGTGAGGAAAAGCAGAGGGAATGTGAAAGAAAATAAGAGAATCCACGGGATTTGATGCCTGG
AAGATTCTCCTTCAAGTGGCAACATGGCATATATATCCTTCTCCGGGGAGTCACATGCACCATTTGGTTCTTAGATACGTTGATGTTTTG

>In-frame_ENST00000367148_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(amino acids)=1170AA_start in transcript=0_stop in transcript=3512
MAHNAGAAAAAGTHSAKSGGSEAALKEGGSAAALSSSSSSSAAAAAASSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHA
HHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLS
KPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSAS
AAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGG
SSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPP
SQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQ
QSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNIKGERGLVPTD
YVEILPSDGKDQFSCGNSVADQAFLDSLSASTAQASSSAASNNHQVGSGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWD
TAFGHPQAYQGPATGDDDDWDEDWDGPKSSSYFKDSESADAGGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQYLLAKQLAKPKEKIPII
VGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK
MRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKE
LLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPD
IIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM

--------------------------------------------------------------
>In-frame_ENST00000275248_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(transcript)=5730nt_BP=1715nt
CGGCCGCCGCCGGCACCCACAGCGCCAAGAGCGGCGGCTCCGAGGCGGCTCTCAAGGAGGGTGGAAGCGCCGCCGCGCTGTCCTCCTCCT
CCTCCTCCTCCGCGGCGGCAGCGGCGGCATCCTCTTCCTCCTCGTCGGGCCCGGGCTCGGCCATGGAGACGGGGCTGCTCCCCAACCACA
AACTGAAAACCGTTGGCGAAGCCCCCGCCGCGCCGCCCCACCAGCAGCACCACCACCACCACCATGCCCACCACCACCACCACCATGCCC
ACCACCTCCACCACCACCACGCACTACAGCAGCAGCTAAACCAGTTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGC
AGCAACAGCAACATCCCATTTCCAACAACAACAGCTTGGGCGGCGCGGGCGGCGGCGCGCCTCAGCCCGGCCCCGACATGGAGCAGCCGC
AACATGGAGGCGCCAAGGACAGTGCTGCGGGCGGCCAGGCCGACCCCCCGGGCCCGCCGCTGCTGAGCAAGCCGGGCGACGAGGACGACG
CGCCGCCCAAGATGGGGGAGCCGGCGGGCGGCCGCTACGAGCACCCGGGCTTGGGCGCCCTGGGCACGCAGCAGCCGCCGGTCGCCGTGC
CCGGGGGCGGCGGCGGCCCGGCGGCCGTCCCGGAGTTTAATAATTACTATGGCAGCGCTGCCCCTGCGAGCGGCGGCCCCGGCGGCCGCG
CTGGGCCTTGCTTTGATCAACATGGCGGACAACAAAGCCCCGGGATGGGGATGATGCACTCCGCCTCCGCCGCCGCCGCCGGGGCCCCCG
GCAGCATGGACCCCCTGCAGAACTCCCACGAAGGGTACCCCAACAGCCAGTGCAACCATTATCCGGGCTACAGCCGGCCCGGCGCGGGCG
GCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCAGCGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGCAGGAGGAGCAGGAGCGGGAG
CTGTGGCGGCGGCGGCCGCGGCGGCGGCGGCAGCAGCAGGAGGCGGCGGCGGCGGCGGCTATGGGGGCTCGTCCGCGGGGTACGGGGTGC
TGAGCTCCCCCCGGCAGCAGGGCGGCGGCATGATGATGGGCCCCGGGGGCGGCGGGGCCGCGAGCCTCAGCAAGGCGGCCGCCGGCTCGG
CGGCGGGGGGCTTCCAGCGCTTCGCCGGCCAGAACCAGCACCCGTCGGGGGCCACCCCGACCCTCAATCAGCTGCTCACCTCGCCCAGCC
CCATGATGCGGAGCTACGGCGGCAGCTACCCCGAGTACAGCAGCCCCAGCGCGCCGCCGCCGCCGCCGTCGCAGCCCCAGTCCCAGGCGG
CGGCGGCGGGGGCGGCGGCGGGCGGCCAGCAGGCGGCCGCGGGCATGGGCTTGGGCAAGGACATGGGCGCCCAGTACGCCGCTGCCAGCC
CGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCATGGGCAGATCCCAGGGCAGCCCAA
TGGATCCAATGGTGATGAAGAGACCTCAGTTGTATGGCATGGGCAGTAACCCTCATTCTCAGCCTCAGCAGAGCAGTCCGTACCCAGGAG
GTTCCTATGGCCCTCCAGGCCCACAGCGGTATCCAATTGGCATCCAGGGTCGGACTCCCGGGGCCATGGCCGGAATGCAGTACCCTCAGC
AGCAGGCTCGGGTTATGTATGATTTTGCTGCTGAACCTGGAAATAATGAACTGACGGTTAATGAAGGAGAAATCATCACAATCACAAATC
CGGATGTAGGTGGAGGATGGCTGGAAGGAAGAAACATCAAAGGAGAACGAGGGCTGGTTCCCACAGACTACGTTGAAATTTTACCCAGTG
ATGGAAAAGATCAATTTTCTTGTGGAAATTCAGTGGCTGACCAAGCCTTCCTTGATTCTCTCTCAGCCAGCACAGCTCAGGCCAGTTCGT
CGGCTGCCAGCAACAATCACCAGGTTGGCAGTGGCAATGACCCCTGGTCAGCCTGGAGTGCCTCCAAATCTGGGAACTGGGAAAGCTCAG
AAGGCTGGGGGGCCCAGCCAGAGGGGGCTGGAGCCCAAAGAAACACAAACACTCCCAACAACTGGGACACTGCCTTCGGCCACCCCCAGG
CCTACCAAGGACCAGCAACTGGTGATGATGATGACTGGGATGAAGACTGGGATGGGCCCAAATCCTCTTCCTACTTTAAGGATTCAGAGT
CAGCTGATGCAGGCGGCGCTCAGCGAGGAAACAGTCGTGCTAGTTCCTCATCCATGAAAATTCCCCTTAACAAATTTCCTGGATTTGCGA
AACCTGGCACGGAACAGTATTTGTTGGCCAAACAACTAGCAAAACCCAAAGAGAAAATTCCCATCATTGTTGGAGATTATGGCCCAATGT
GGGTTTATCCTACCTCTACTTTTGACTGTGTGGTAGCAGATCCCAGGAAAGGCTCCAAAATGTATGGTCTAAAGAGCTACATCGAATATC
AGCTAACACCTACTAACACTAATCGATCTGTAAACCACAGGTATAAGCACTTTGACTGGTTATATGAGCGTCTCCTGGTTAAGTTTGGGT
CAGCCATTCCAATCCCTTCTCTTCCAGACAAACAAGTCACAGGCCGCTTTGAAGAGGAATTTATCAAAATGCGCATGGAGAGACTTCAGG
CCTGGATGACCAGGATGTGTCGCCATCCAGTAATCTCAGAAAGTGAAGTTTTCCAGCAGTTCCTAAATTTCCGAGATGAGAAGGAATGGA
AAACTGGAAAGAGGAAGGCCGAGAGAGATGAGCTGGCGGGAGTCATGATATTTTCCACCATGGAACCAGAGGCACCTGACTTGGACTTAG
TAGAAATAGAGCAGAAGTGCGAGGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGTGGGGCAGGAGC
ACTGGAAGCGCTGCACGGGCCCATTACCCAAGGAATATCAGAAGATAGGAAAGGCCTTGCAGAGTTTGGCCACAGTGTTCAGTTCCAGTG
GCTATCAAGGTGAAACAGATCTCAATGATGCAATAACAGAAGCAGGAAAGACTTATGAAGAAATTGCCAGTCTCGTGGCAGAACAGCCAA
AGAAAGATCTCCATTTCCTGATGGAATGTAATCACGAGTATAAAGGTTTTCTTGGCTGCTTCCCTGACATCATTGGCACTCACAAGGGAG
CAATAGAAAAAGTGAAAGAAAGTGACAAACTAGTTGCAACAAGTAAAATCACCCTACAAGACAAACAGAACATGGTGAAGAGAGTCAGCA
TCATGTCTTACGCGTTGCAAGCTGAGATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCGCCTGTACCTGGAGC
AGCAAGTGCAATTTTACGAAACGATTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTTCCAGTGATGTAGGACAGAACGGGCCTTGAAG
AGAATGCCGCGTGCTTTCTCCTGACTTGGGGCAATGCAATTCAAAACTTTTTTTCCCCTATTATTCAGAAAAAAAAGGAAACAAAACCAA
AAAGAAAGAGTTGCAAAAAACTGCATTTATTTTATTAGCCACCCTAAATGCGTCAGTTATTTAGGGATGGTCTTTTGTTCATTTCCGCAT
CCATTATTTAAACCAGTGGAAATTGTCTCTATTTTTGGAAAGTACTTAAAAGTTACCAGAATTTTCAATGGAAAATGAGGGGTTTCTCCC
CACTGATATTTTACATAGAGTCATAATTTATATGTCTTATAAATTATAAGTCTTATATAATTTATAAGTCTCCCACAATCTTCCAGTTCT
TACCCAGTGTCAGATAATTAATTACTAATTACTTTCTTAAAAACATGAACTATGCCAGAATAAAAAATATCTATGTTTGTATATTTTTAT
AACTCCTTTCAGTCCTCTGGGGCTCCTGTCATTGAGGGAAGTCGTTACGCCTTTCACTGCCACAGTTACAGCTCAAGTGCTTACACTTCA
AGAGGGAGGACGCTGGGGGCCCCTGGGGCTGCTAGTGCCATCGTGGTGTGTGGCAGGTGGGCCATCCCATGTCCCTCCAGGGGGACCCCA
CAGCCTGGCAGATGAGCAGATACCCCTGGCCACCCATGTCCTCAGCGACATTTCTGATGTGCTGCTCTTATGTGAGGACCAGTGCTTTCT
CTCTTTGCACTTCCTTCCTAATCTTGGTTAAGGCATGTTTTATGCCATGAAGAATACATTAGAAGAATTGAGGGACTTTGTAGAGAATTT
TGTGGCTTTGGTCCAACGGGTGAGTGGCTGTGCGGAGGCCTGTGTTCGGGAGGGCCTGGGAGAAGGAGGGCACCCAGCACCCCGGCGTCT
CTGGCCCTTTCTTATTCTTTGGCTCCTCATCCACCGTGATGAGAAGCGCTGCTGTGGCCACGGCACACTGCTTGGCTTGGGTGGCGGGTT
CATGGCCAGTTGGTGTCATCAGCAAAGAGAAAAAGCACAGGTTAGCTCCCCATTAGATGGAAAAGTGTAGGGACTGAGAAGGGCTGCAGC
CTCAGCAGTGTACAGAGTCCCCGGCGCTCTGAGGTTGGAGAGAAAGAACAGACCAGCGCCCTTCCCGACTACATCCGAAACTTCACACAG
GGTGTTTCTGAGCACCAGCACTTCCAGCGCTTCACTTAACGGCATAAAGCAAAACAGGACCTTGGCACACCGTCAGCTCGAACTCAACAC
TGGCAGCCACCGTCTCACCCCTGCGGAGGAGCGCTCCCGTCTCCCACAGGTGCCTTACCGCGTTCCCTCCCGCTGCTTTCATTTTTCTGA
CCTAATAATTACGGGAAATGGAAAGTCTGGGCCAGCATCAATAAAATGACACCAAAAATAAGTAGATGAAATCAAATGAATATGAGAACA
TCTTGTTCTTCAATATCACGGGTTTTTGTTAATGTTTCATAAGTAATTCTCCCCACTTGATTTTTCTTCTATAAAATCCCATAGAACAAT
GTTTATGCTATAGCCATTTAATATATGTACAAATTGTAAAGAATATGTATAAATGTTTTACACGAATGTAAGAGCATGTAGAAGCCAACA
TATAAATAAATTGTTTAAAAAAACTGTACAGTAAATTCTCAAAGCACTTTTTCAAAACACTTTTTGGACTTTGTGTGTGATTTTTGTTGT
TGTTGTTAAGTACTTTTTATTCCAGCTGCTGAAAATGGTCCAGGTAATGAATTCTTCCCCAAATCCTATTTCTTCTGACATGAATTCATC
ATTTCAGTTCCGTAGGTCAGTGTTGCGGTCCGGGAAGCGTATCATAACCACCTGGGAGTTGCCAAGAAGCAGACAGTCTCCCAGTGTCTG
ACTCTCGGATATTTGGATTTGACTGGTGTGAGGCAAAGTGAAAAAGGGATGGGGGAAATGGAGATGGCACGGGCTCCTCAGAGCGTGGTA
GCCGACTGTGAGGAAAAGCAGAGGGAATGTGAAAGAAAATAAGAGAATCCACGGGATTTGATGCCTGGAAGATTCTCCTTCAAGTGGCAA
CATGGCATATATATCCTTCTCCGGGGAGTCACATGCACCATTTGGTTCTTAGATACGTTGATGTTTTGATTTTTAATGATTTGTATCAAC

>In-frame_ENST00000275248_ENST00000392185_TCGA-BH-A1F6-01A_ARID1B_chr6_157150555_+_SNX9_chr6_158288579_length(amino acids)=1137AA_start in transcript=77_stop in transcript=3490
MSSSSSSSAAAAAASSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQ
QQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQP
PVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSR
PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKA
AAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQY
AAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGM
QYPQQQARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNIKGERGLVPTDYVEILPSDGKDQFSCGNSVADQAFLDSLSASTA
QASSSAASNNHQVGSGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWDTAFGHPQAYQGPATGDDDDWDEDWDGPKSSSYF
KDSESADAGGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKS
YIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD
EKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATV
FSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMV

--------------------------------------------------------------

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Fusion Gene PPI Analysis for ARID1B-SNX9


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ARID1B-SNX9


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ARID1B-SNX9


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneARID1BC0265338Coffin-Siris syndrome7CLINGEN;CTD_human;GENOMICS_ENGLAND
HgeneARID1BC1535926Neurodevelopmental Disorders2CTD_human
HgeneARID1BC3281201MENTAL RETARDATION, AUTOSOMAL DOMINANT 122GENOMICS_ENGLAND
HgeneARID1BC0014544Epilepsy1CTD_human
HgeneARID1BC0019569Hirschsprung Disease1GENOMICS_ENGLAND
HgeneARID1BC0027819Neuroblastoma1CTD_human
HgeneARID1BC0086237Epilepsy, Cryptogenic1CTD_human
HgeneARID1BC0236018Aura1CTD_human
HgeneARID1BC0751111Awakening Epilepsy1CTD_human
HgeneARID1BC2239176Liver carcinoma1CGI;CTD_human
HgeneARID1BC3150215CHROMOSOME 6q24-q25 DELETION SYNDROME1ORPHANET