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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ARL13B-EPS8 (FusionGDB2 ID:6646) |
Fusion Gene Summary for ARL13B-EPS8 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ARL13B-EPS8 | Fusion gene ID: 6646 | Hgene | Tgene | Gene symbol | ARL13B | EPS8 | Gene ID | 200894 | 2059 |
Gene name | ADP ribosylation factor like GTPase 13B | epidermal growth factor receptor pathway substrate 8 | |
Synonyms | ARL2L1|JBTS8 | DFNB102 | |
Cytomap | 3q11.1-q11.2 | 12p12.3 | |
Type of gene | protein-coding | protein-coding | |
Description | ADP-ribosylation factor-like protein 13BADP-ribosylation factor-like 13BADP-ribosylation factor-like 2-like 1ARL2-like protein 1 | epidermal growth factor receptor kinase substrate 8 | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | Q3SXY8 | Q9H6S3 | |
Ensembl transtripts involved in fusion gene | ENST00000535334, ENST00000303097, ENST00000394222, ENST00000539730, ENST00000471138, ENST00000486562, | ENST00000543523, ENST00000281172, ENST00000543612, ENST00000540613, ENST00000542903, | |
Fusion gene scores | * DoF score | 5 X 3 X 5=75 | 9 X 7 X 4=252 |
# samples | 5 | 9 | |
** MAII score | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/252*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ARL13B [Title/Abstract] AND EPS8 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ARL13B(93714788)-EPS8(15823857), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across ARL13B (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across EPS8 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-8365-01A | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
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Fusion Gene ORF analysis for ARL13B-EPS8 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000535334 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000535334 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000535334 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000535334 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000535334 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000303097 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000303097 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000303097 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000303097 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000303097 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000394222 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000394222 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000394222 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000394222 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000394222 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-3CDS | ENST00000539730 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-3CDS | ENST00000539730 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-3CDS | ENST00000539730 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-intron | ENST00000539730 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-intron | ENST00000539730 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000471138 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000471138 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000471138 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000471138 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000471138 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-3CDS | ENST00000486562 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-3CDS | ENST00000486562 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-3CDS | ENST00000486562 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-intron | ENST00000486562 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-intron | ENST00000486562 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000394222 | ARL13B | chr3 | 93714788 | + | ENST00000543523 | EPS8 | chr12 | 15823857 | - | 3897 | 405 | 275 | 2737 | 820 |
ENST00000394222 | ARL13B | chr3 | 93714788 | + | ENST00000281172 | EPS8 | chr12 | 15823857 | - | 3893 | 405 | 275 | 2737 | 820 |
ENST00000394222 | ARL13B | chr3 | 93714788 | + | ENST00000543612 | EPS8 | chr12 | 15823857 | - | 3072 | 405 | 275 | 2737 | 820 |
ENST00000471138 | ARL13B | chr3 | 93714788 | + | ENST00000543523 | EPS8 | chr12 | 15823857 | - | 3891 | 399 | 269 | 2731 | 820 |
ENST00000471138 | ARL13B | chr3 | 93714788 | + | ENST00000281172 | EPS8 | chr12 | 15823857 | - | 3887 | 399 | 269 | 2731 | 820 |
ENST00000471138 | ARL13B | chr3 | 93714788 | + | ENST00000543612 | EPS8 | chr12 | 15823857 | - | 3066 | 399 | 269 | 2731 | 820 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000394222 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000555604 | 0.9994444 |
ENST00000394222 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000569832 | 0.9994301 |
ENST00000394222 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.001333483 | 0.9986665 |
ENST00000471138 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000561809 | 0.9994382 |
ENST00000471138 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000575852 | 0.9994242 |
ENST00000471138 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.001352433 | 0.99864763 |
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Fusion Genomic Features for ARL13B-EPS8 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ARL13B-EPS8 |
Go to FGviewer for the breakpoints of chr3:93714788-chr12:15823857 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ARL13B | EPS8 |
FUNCTION: Cilium-specific protein required to control the microtubule-based, ciliary axoneme structure. May act by maintaining the association between IFT subcomplexes A and B. Binds GTP but is not able to hydrolyze it; the GTPase activity remains unclear. Required to pattern the neural tube. Involved in cerebral cortex development: required for the initial formation of a polarized radial glial scaffold, the first step in the construction of the cerebral cortex, by regulating ciliary signaling. Regulates the migration and placement of postmitotic interneurons in the developing cerebral cortex. May regulate endocytic recycling traffic; however, additional evidence is required to confirm these data. {ECO:0000269|PubMed:23150559}. | FUNCTION: Stimulates guanine exchange activity of SOS1. May play a role in membrane ruffling and remodeling of the actin cytoskeleton. In the cochlea, is required for stereocilia maintenance in adult hair cells (By similarity). {ECO:0000250|UniProtKB:Q99K30, ECO:0000269|PubMed:14565974}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 28_35 | 43.333333333333336 | 429.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 28_35 | 43.333333333333336 | 524.0 | Nucleotide binding | GTP |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 421_440 | 45.333333333333336 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 615_651 | 45.333333333333336 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 659_664 | 45.333333333333336 | 823.0 | Compositional bias | Note=Poly-Ser | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 421_440 | 45.333333333333336 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 615_651 | 45.333333333333336 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 659_664 | 45.333333333333336 | 823.0 | Compositional bias | Note=Poly-Ser | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 421_440 | 45.333333333333336 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 615_651 | 45.333333333333336 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 659_664 | 45.333333333333336 | 823.0 | Compositional bias | Note=Poly-Ser | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 381_414 | 45.333333333333336 | 823.0 | Domain | Note=PH%3B second part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 531_590 | 45.333333333333336 | 823.0 | Domain | SH3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 69_129 | 45.333333333333336 | 823.0 | Domain | Note=PH%3B first part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 381_414 | 45.333333333333336 | 823.0 | Domain | Note=PH%3B second part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 531_590 | 45.333333333333336 | 823.0 | Domain | SH3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 69_129 | 45.333333333333336 | 823.0 | Domain | Note=PH%3B first part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 381_414 | 45.333333333333336 | 823.0 | Domain | Note=PH%3B second part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 531_590 | 45.333333333333336 | 823.0 | Domain | SH3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 69_129 | 45.333333333333336 | 823.0 | Domain | Note=PH%3B first part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 649_822 | 45.333333333333336 | 823.0 | Region | Effector region | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 680_698 | 45.333333333333336 | 823.0 | Region | Amphipathic helix | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 718_738 | 45.333333333333336 | 823.0 | Region | Helix bundle 1 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 762_767 | 45.333333333333336 | 823.0 | Region | Helix bundle 3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 766_785 | 45.333333333333336 | 823.0 | Region | Helix bundle 4 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 649_822 | 45.333333333333336 | 823.0 | Region | Effector region | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 680_698 | 45.333333333333336 | 823.0 | Region | Amphipathic helix | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 718_738 | 45.333333333333336 | 823.0 | Region | Helix bundle 1 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 762_767 | 45.333333333333336 | 823.0 | Region | Helix bundle 3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 766_785 | 45.333333333333336 | 823.0 | Region | Helix bundle 4 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 649_822 | 45.333333333333336 | 823.0 | Region | Effector region | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 680_698 | 45.333333333333336 | 823.0 | Region | Amphipathic helix | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 718_738 | 45.333333333333336 | 823.0 | Region | Helix bundle 1 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 762_767 | 45.333333333333336 | 823.0 | Region | Helix bundle 3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 766_785 | 45.333333333333336 | 823.0 | Region | Helix bundle 4 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 192_245 | 0 | 322.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 192_245 | 43.333333333333336 | 429.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 192_245 | 43.333333333333336 | 524.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 192_245 | 0 | 326.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 369_419 | 0 | 322.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 369_419 | 43.333333333333336 | 429.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 369_419 | 43.333333333333336 | 524.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 369_419 | 0 | 326.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 130_133 | 0 | 322.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 28_35 | 0 | 322.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 71_75 | 0 | 322.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 130_133 | 43.333333333333336 | 429.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 71_75 | 43.333333333333336 | 429.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 130_133 | 43.333333333333336 | 524.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 71_75 | 43.333333333333336 | 524.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 130_133 | 0 | 326.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 28_35 | 0 | 326.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 71_75 | 0 | 326.0 | Nucleotide binding | GTP |
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Fusion Gene Sequence for ARL13B-EPS8 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000394222_ENST00000543523_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(transcript)=3897nt_BP=405nt CGCGGGGCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTC GTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTA GGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGAC CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGAC TTGATAATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAG ATATATCTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAAT TGAAATTGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAAT CAAAGAATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCAC TGGTGTGCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTG AAAGTGCAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGC CTCCACCCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAG CCGACCAAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGC AAATCTTAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGA AGAAAAACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACT GTTTCCAAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTT TGTTTACTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAA TTGATTTCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGC CAAAAGAACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAAC AAGATCTTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCA GTGTATCAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTG TTGCTTTTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATG ACTTTGTAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTC GAAATGCAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCAC CTTATACTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAG CTCCTGTTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCT CCAGTGACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGC AAGATGAACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATA TCACTTACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAA ATGGTGCACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAA AAGCTGCATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATT CAGGAGTGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCT TTGTTTTAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGA GCACAGGATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACT TTACCAAGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTAT TCACTGCAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCA TAGCTCACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAAT GCCAACAGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATT CTCAAGAGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACT GTGTTCTTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTA CAGTATTTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCA AGTATTTCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTC AACAAATGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTA TATTTTAACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAAT >In-frame_ENST00000394222_ENST00000543523_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(amino acids)=820AA_start in transcript=275_stop in transcript=2737 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >In-frame_ENST00000394222_ENST00000281172_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(transcript)=3893nt_BP=405nt CGCGGGGCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTC GTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTA GGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGAC CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGAC TTGATAATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAG ATATATCTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAAT TGAAATTGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAAT CAAAGAATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCAC TGGTGTGCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTG AAAGTGCAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGC CTCCACCCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAG CCGACCAAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGC AAATCTTAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGA AGAAAAACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACT GTTTCCAAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTT TGTTTACTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAA TTGATTTCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGC CAAAAGAACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAAC AAGATCTTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCA GTGTATCAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTG TTGCTTTTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATG ACTTTGTAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTC GAAATGCAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCAC CTTATACTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAG CTCCTGTTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCT CCAGTGACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGC AAGATGAACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATA TCACTTACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAA ATGGTGCACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAA AAGCTGCATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATT CAGGAGTGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCT TTGTTTTAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGA GCACAGGATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACT TTACCAAGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTAT TCACTGCAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCA TAGCTCACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAAT GCCAACAGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATT CTCAAGAGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACT GTGTTCTTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTA CAGTATTTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCA AGTATTTCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTC AACAAATGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTA TATTTTAACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAAT >In-frame_ENST00000394222_ENST00000281172_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(amino acids)=820AA_start in transcript=275_stop in transcript=2737 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >In-frame_ENST00000394222_ENST00000543612_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(transcript)=3072nt_BP=405nt CGCGGGGCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTC GTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTA GGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGAC CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGAC TTGATAATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAG ATATATCTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAAT TGAAATTGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAAT CAAAGAATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCAC TGGTGTGCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTG AAAGTGCAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGC CTCCACCCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAG CCGACCAAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGC AAATCTTAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGA AGAAAAACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACT GTTTCCAAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTT TGTTTACTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAA TTGATTTCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGC CAAAAGAACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAAC AAGATCTTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCA GTGTATCAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTG TTGCTTTTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATG ACTTTGTAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTC GAAATGCAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCAC CTTATACTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAG CTCCTGTTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCT CCAGTGACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGC AAGATGAACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATA TCACTTACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAA ATGGTGCACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAA AAGCTGCATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATT CAGGAGTGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCT TTGTTTTAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGA GCACAGGATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACT TTACCAAGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTAT >In-frame_ENST00000394222_ENST00000543612_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(amino acids)=820AA_start in transcript=275_stop in transcript=2737 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >In-frame_ENST00000471138_ENST00000543523_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(transcript)=3891nt_BP=399nt GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTCGTCGCG GACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTAGGGGCG TCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGA TGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATA ATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAGATATAT CTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAATTGAAAT TGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAATCAAAGA ATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCACTGGTGT GCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTGAAAGTG CAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGCCTCCAC CCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAGCCGACC AAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATCT TAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGAAGAAAA ACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACTGTTTCC AAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTTTGTTTA CTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAATTGATT TCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGCCAAAAG AACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAACAAGATC TTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCAGTGTAT CAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTGTTGCTT TTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATGACTTTG TAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTCGAAATG CAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCACCTTATA CTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAGCTCCTG TTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCTCCAGTG ACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGCAAGATG AACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATATCACTT ACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAAATGGTG CACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAAAAGCTG CATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATTCAGGAG TGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCTTTGTTT TAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGAGCACAG GATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACTTTACCA AGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTATTCACTG CAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCATAGCTC ACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAATGCCAAC AGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATTCTCAAG AGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACTGTGTTC TTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTACAGTAT TTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCAAGTATT TCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTCAACAAA TGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTATATTTT AACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAATAAACAG >In-frame_ENST00000471138_ENST00000543523_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(amino acids)=820AA_start in transcript=269_stop in transcript=2731 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >In-frame_ENST00000471138_ENST00000281172_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(transcript)=3887nt_BP=399nt GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTCGTCGCG GACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTAGGGGCG TCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGA TGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATA ATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAGATATAT CTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAATTGAAAT TGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAATCAAAGA ATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCACTGGTGT GCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTGAAAGTG CAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGCCTCCAC CCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAGCCGACC AAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATCT TAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGAAGAAAA ACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACTGTTTCC AAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTTTGTTTA CTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAATTGATT TCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGCCAAAAG AACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAACAAGATC TTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCAGTGTAT CAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTGTTGCTT TTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATGACTTTG TAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTCGAAATG CAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCACCTTATA CTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAGCTCCTG TTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCTCCAGTG ACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGCAAGATG AACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATATCACTT ACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAAATGGTG CACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAAAAGCTG CATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATTCAGGAG TGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCTTTGTTT TAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGAGCACAG GATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACTTTACCA AGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTATTCACTG CAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCATAGCTC ACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAATGCCAAC AGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATTCTCAAG AGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACTGTGTTC TTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTACAGTAT TTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCAAGTATT TCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTCAACAAA TGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTATATTTT AACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAATAAACAG >In-frame_ENST00000471138_ENST00000281172_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(amino acids)=820AA_start in transcript=269_stop in transcript=2731 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >In-frame_ENST00000471138_ENST00000543612_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(transcript)=3066nt_BP=399nt GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTCGTCGCG GACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTAGGGGCG TCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGA TGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATA ATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAGATATAT CTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAATTGAAAT TGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAATCAAAGA ATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCACTGGTGT GCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTGAAAGTG CAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGCCTCCAC CCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAGCCGACC AAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATCT TAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGAAGAAAA ACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACTGTTTCC AAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTTTGTTTA CTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAATTGATT TCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGCCAAAAG AACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAACAAGATC TTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCAGTGTAT CAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTGTTGCTT TTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATGACTTTG TAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTCGAAATG CAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCACCTTATA CTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAGCTCCTG TTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCTCCAGTG ACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGCAAGATG AACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATATCACTT ACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAAATGGTG CACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAAAAGCTG CATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATTCAGGAG TGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCTTTGTTT TAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGAGCACAG GATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACTTTACCA AGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTATTCACTG >In-frame_ENST00000471138_ENST00000543612_TCGA-BR-8365-01A_ARL13B_chr3_93714788_+_EPS8_chr12_15823857_length(amino acids)=820AA_start in transcript=269_stop in transcript=2731 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ARL13B-EPS8 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ARL13B-EPS8 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ARL13B-EPS8 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ARL13B | C2676771 | JOUBERT SYNDROME 8 (disorder) | 4 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | ARL13B | C0431399 | Familial aplasia of the vermis | 1 | ORPHANET |
Hgene | ARL13B | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | ARL13B | C4551568 | Joubert syndrome 1 | 1 | ORPHANET |
Tgene | EPS8 | C1846647 | DEAFNESS, AUTOSOMAL RECESSIVE (disorder) | 6 | CLINGEN |
Tgene | EPS8 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Tgene | EPS8 | C1857810 | Deafness, prelingual, profound (affects all frequencies) | 1 | GENOMICS_ENGLAND |
Tgene | EPS8 | C3892050 | DEAFNESS, AUTOSOMAL RECESSIVE 102 | 1 | CTD_human;GENOMICS_ENGLAND |