FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:POLA1-TSPAN7 (FusionGDB2 ID:66463)

Fusion Gene Summary for POLA1-TSPAN7

check button Fusion gene summary
Fusion gene informationFusion gene name: POLA1-TSPAN7
Fusion gene ID: 66463
HgeneTgene
Gene symbol

POLA1

TSPAN7

Gene ID

5422

7102

Gene nameDNA polymerase alpha 1, catalytic subunittetraspanin 7
SynonymsNSX|POLA|VEODS|p180A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b
Cytomap

Xp22.11-p21.3

Xp11.4

Type of geneprotein-codingprotein-coding
DescriptionDNA polymerase alpha catalytic subunitDNA polymerase alpha catalytic subunit p180polymerase (DNA directed), alpha 1, catalytic subunitpolymerase (DNA) alpha 1, catalytic subunitpolymerase (DNA-directed), alpha (70kD)tetraspanin-7CD231 antigenT-cell acute lymphoblastic leukemia associated antigen 1cell surface glycoprotein A15membrane component chromosome X surface marker 1membrane component, X chromosome, surface marker 1tetraspanin proteintransmembrane 4 supe
Modification date2020031320200320
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000379068, ENST00000379059, 
ENST00000493342, 		ENST00000378482, 
ENST00000422612, ENST00000545599, 
ENST00000286824, ENST00000488893, 
Fusion gene scores* DoF score13 X 13 X 7=118311 X 10 X 4=440
# samples 1512
** MAII scorelog2(15/1183*10)=-2.97941566784391
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(12/440*10)=-1.87446911791614
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: POLA1 [Title/Abstract] AND TSPAN7 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPOLA1(24767109)-TSPAN7(38525375), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePOLA1

GO:0006269

DNA replication, synthesis of RNA primer

2175912

HgenePOLA1

GO:0006270

DNA replication initiation

2175912

HgenePOLA1

GO:0006272

leading strand elongation

2175912|7910375

HgenePOLA1

GO:0006273

lagging strand elongation

2175912|7910375

HgenePOLA1

GO:0006281

DNA repair

3335506


check buttonFusion gene breakpoints across POLA1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across TSPAN7 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-13-1407-01APOLA1chrX

24767109

+TSPAN7chrX

38525375

+
ChimerDB4OVTCGA-13-1407POLA1chrX

24767109

+TSPAN7chrX

38525374

+
ChimerDB4OVTCGA-13-1407-01APOLA1chrX

24767109

+TSPAN7chrX

38525375

+


Top

Fusion Gene ORF analysis for POLA1-TSPAN7

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000379068ENST00000378482POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379068ENST00000422612POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379068ENST00000545599POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379068ENST00000286824POLA1chrX

24767109

+TSPAN7chrX

38525375

+
5CDS-3UTRENST00000379068ENST00000488893POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379059ENST00000378482POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379059ENST00000422612POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379059ENST00000545599POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379059ENST00000286824POLA1chrX

24767109

+TSPAN7chrX

38525375

+
5CDS-3UTRENST00000379059ENST00000488893POLA1chrX

24767109

+TSPAN7chrX

38525375

+
intron-3CDSENST00000493342ENST00000378482POLA1chrX

24767109

+TSPAN7chrX

38525375

+
intron-3CDSENST00000493342ENST00000422612POLA1chrX

24767109

+TSPAN7chrX

38525375

+
intron-3CDSENST00000493342ENST00000545599POLA1chrX

24767109

+TSPAN7chrX

38525375

+
intron-3CDSENST00000493342ENST00000286824POLA1chrX

24767109

+TSPAN7chrX

38525375

+
intron-3UTRENST00000493342ENST00000488893POLA1chrX

24767109

+TSPAN7chrX

38525375

+
In-frameENST00000379068ENST00000378482POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379068ENST00000422612POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379068ENST00000545599POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379068ENST00000286824POLA1chrX

24767109

+TSPAN7chrX

38525374

+
5CDS-3UTRENST00000379068ENST00000488893POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379059ENST00000378482POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379059ENST00000422612POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379059ENST00000545599POLA1chrX

24767109

+TSPAN7chrX

38525374

+
In-frameENST00000379059ENST00000286824POLA1chrX

24767109

+TSPAN7chrX

38525374

+
5CDS-3UTRENST00000379059ENST00000488893POLA1chrX

24767109

+TSPAN7chrX

38525374

+
intron-3CDSENST00000493342ENST00000378482POLA1chrX

24767109

+TSPAN7chrX

38525374

+
intron-3CDSENST00000493342ENST00000422612POLA1chrX

24767109

+TSPAN7chrX

38525374

+
intron-3CDSENST00000493342ENST00000545599POLA1chrX

24767109

+TSPAN7chrX

38525374

+
intron-3CDSENST00000493342ENST00000286824POLA1chrX

24767109

+TSPAN7chrX

38525374

+
intron-3UTRENST00000493342ENST00000488893POLA1chrX

24767109

+TSPAN7chrX

38525374

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000379068POLA1chrX24767109+ENST00000378482TSPAN7chrX38525375+465830074336751210
ENST00000379068POLA1chrX24767109+ENST00000422612TSPAN7chrX38525375+391330074336751210
ENST00000379068POLA1chrX24767109+ENST00000545599TSPAN7chrX38525375+401630074336751210
ENST00000379068POLA1chrX24767109+ENST00000286824TSPAN7chrX38525375+414230074336751210
ENST00000379059POLA1chrX24767109+ENST00000378482TSPAN7chrX38525375+461229611536291204
ENST00000379059POLA1chrX24767109+ENST00000422612TSPAN7chrX38525375+386729611536291204
ENST00000379059POLA1chrX24767109+ENST00000545599TSPAN7chrX38525375+397029611536291204
ENST00000379059POLA1chrX24767109+ENST00000286824TSPAN7chrX38525375+409629611536291204
ENST00000379068POLA1chrX24767109+ENST00000378482TSPAN7chrX38525374+465830074336751210
ENST00000379068POLA1chrX24767109+ENST00000422612TSPAN7chrX38525374+391330074336751210
ENST00000379068POLA1chrX24767109+ENST00000545599TSPAN7chrX38525374+401630074336751210
ENST00000379068POLA1chrX24767109+ENST00000286824TSPAN7chrX38525374+414230074336751210
ENST00000379059POLA1chrX24767109+ENST00000378482TSPAN7chrX38525374+461229611536291204
ENST00000379059POLA1chrX24767109+ENST00000422612TSPAN7chrX38525374+386729611536291204
ENST00000379059POLA1chrX24767109+ENST00000545599TSPAN7chrX38525374+397029611536291204
ENST00000379059POLA1chrX24767109+ENST00000286824TSPAN7chrX38525374+409629611536291204

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000379068ENST00000378482POLA1chrX24767109+TSPAN7chrX38525375+0.000137180.9998628
ENST00000379068ENST00000422612POLA1chrX24767109+TSPAN7chrX38525375+0.0001843280.99981564
ENST00000379068ENST00000545599POLA1chrX24767109+TSPAN7chrX38525375+0.0002035730.99979645
ENST00000379068ENST00000286824POLA1chrX24767109+TSPAN7chrX38525375+0.0001867620.99981326
ENST00000379059ENST00000378482POLA1chrX24767109+TSPAN7chrX38525375+0.000139930.99986005
ENST00000379059ENST00000422612POLA1chrX24767109+TSPAN7chrX38525375+0.0001862430.99981374
ENST00000379059ENST00000545599POLA1chrX24767109+TSPAN7chrX38525375+0.000208560.99979144
ENST00000379059ENST00000286824POLA1chrX24767109+TSPAN7chrX38525375+0.000190450.99980956
ENST00000379068ENST00000378482POLA1chrX24767109+TSPAN7chrX38525374+0.000137180.9998628
ENST00000379068ENST00000422612POLA1chrX24767109+TSPAN7chrX38525374+0.0001843280.99981564
ENST00000379068ENST00000545599POLA1chrX24767109+TSPAN7chrX38525374+0.0002035730.99979645
ENST00000379068ENST00000286824POLA1chrX24767109+TSPAN7chrX38525374+0.0001867620.99981326
ENST00000379059ENST00000378482POLA1chrX24767109+TSPAN7chrX38525374+0.000139930.99986005
ENST00000379059ENST00000422612POLA1chrX24767109+TSPAN7chrX38525374+0.0001862430.99981374
ENST00000379059ENST00000545599POLA1chrX24767109+TSPAN7chrX38525374+0.000208560.99979144
ENST00000379059ENST00000286824POLA1chrX24767109+TSPAN7chrX38525374+0.000190450.99980956

Top

Fusion Genomic Features for POLA1-TSPAN7


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
POLA1chrX24767109+TSPAN7chrX38525374+5.29E-081
POLA1chrX24767109+TSPAN7chrX38525374+5.29E-081
POLA1chrX24767109+TSPAN7chrX38525374+5.29E-081
POLA1chrX24767109+TSPAN7chrX38525374+5.29E-081

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for POLA1-TSPAN7


check button Go to

FGviewer for the breakpoints of chrX:24767109-chrX:38525375

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+263775_112982.01463.0Compositional biasNote=Asp-rich
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+263775_112982.01463.0Compositional biasNote=Asp-rich
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+2637650_715982.01463.0RegionDNA-binding
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+2637650_715982.01463.0RegionDNA-binding
TgeneTSPAN7chrX:24767109chrX:38525374ENST0000037848208113_21327.0489.0Topological domainExtracellular
TgeneTSPAN7chrX:24767109chrX:38525374ENST0000037848208235_24927.0489.0Topological domainCytoplasmic
TgeneTSPAN7chrX:24767109chrX:38525374ENST000003784820841_5627.0489.0Topological domainExtracellular
TgeneTSPAN7chrX:24767109chrX:38525374ENST000003784820876_8627.0489.0Topological domainCytoplasmic
TgeneTSPAN7chrX:24767109chrX:38525375ENST0000037848208113_21327.0489.0Topological domainExtracellular
TgeneTSPAN7chrX:24767109chrX:38525375ENST0000037848208235_24927.0489.0Topological domainCytoplasmic
TgeneTSPAN7chrX:24767109chrX:38525375ENST000003784820841_5627.0489.0Topological domainExtracellular
TgeneTSPAN7chrX:24767109chrX:38525375ENST000003784820876_8627.0489.0Topological domainCytoplasmic
TgeneTSPAN7chrX:24767109chrX:38525374ENST0000037848208214_23427.0489.0TransmembraneHelical
TgeneTSPAN7chrX:24767109chrX:38525374ENST000003784820857_7527.0489.0TransmembraneHelical
TgeneTSPAN7chrX:24767109chrX:38525374ENST000003784820887_11227.0489.0TransmembraneHelical
TgeneTSPAN7chrX:24767109chrX:38525375ENST0000037848208214_23427.0489.0TransmembraneHelical
TgeneTSPAN7chrX:24767109chrX:38525375ENST000003784820857_7527.0489.0TransmembraneHelical
TgeneTSPAN7chrX:24767109chrX:38525375ENST000003784820887_11227.0489.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+26371047_1050982.01463.0Compositional biasNote=Poly-Leu
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+26371051_1054982.01463.0Compositional biasNote=Poly-Lys
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+26371047_1050982.01463.0Compositional biasNote=Poly-Leu
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+26371051_1054982.01463.0Compositional biasNote=Poly-Lys
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+26371348_1374982.01463.0MotifCysB motif
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+26371348_1374982.01463.0MotifCysB motif
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+26371245_1376982.01463.0RegionDNA-binding
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+26371245_1376982.01463.0RegionDNA-binding
HgenePOLA1chrX:24767109chrX:38525374ENST00000379059+26371283_1318982.01463.0Zinc fingerCysA-type
HgenePOLA1chrX:24767109chrX:38525375ENST00000379059+26371283_1318982.01463.0Zinc fingerCysA-type
TgeneTSPAN7chrX:24767109chrX:38525374ENST00000378482081_1627.0489.0Topological domainCytoplasmic
TgeneTSPAN7chrX:24767109chrX:38525375ENST00000378482081_1627.0489.0Topological domainCytoplasmic
TgeneTSPAN7chrX:24767109chrX:38525374ENST000003784820817_4027.0489.0TransmembraneHelical
TgeneTSPAN7chrX:24767109chrX:38525375ENST000003784820817_4027.0489.0TransmembraneHelical


Top

Fusion Gene Sequence for POLA1-TSPAN7


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000379068_ENST00000378482_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=4658nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG
TAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAGGTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTG
CATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATCATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCT
GCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATGCCACACACCTTTAAGTAGATAAGCAGACGATAGTTATCTGTTCT
TTTGACTTAATCTCATTTGGTTTGATTTTCCCTCTACTAAGGCTTTCCTACCTTCTTCAGGCTGCCTAAGACATGTAACGAAACACTTCA
ATAATTGTCCATGAGGAGAAAAAAAGCATGTGTCATGCATGAAGGAAACTGAACTTGAGGTGGCCTCCTTGCTTGTTACATACCTGGGTA
TGTGTAGGCAGTTTAGTGCATCTTTGCCTCTCGGTTGAAACCTGTATAACCCTGTTACAAAGCTGTGTTGTTGCTTCTTGTGAAGGCCAT
GATATTTTGTTTTTCCCCAATTAATTGCTATTGTGTTATTTTACTACTTCTCTCTGTATTTTTTCTTGCATTGACATTATAGACATTGAG
GACCTCATCCAAACAATTTAAAAATGAGTGTGAAGGGGGAACAAGTCAAAATATTTTTAAAAGATCTTCAAAAGTAATGCCTCTGTCTAG

>In-frame_ENST00000379068_ENST00000378482_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000422612_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=3913nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG

>In-frame_ENST00000379068_ENST00000422612_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000545599_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=4016nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG
TAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAGGTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTG

>In-frame_ENST00000379068_ENST00000545599_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000286824_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=4142nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG
TAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAGGTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTG
CATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATCATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCT
GCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATGCCACACACCTTTAAGTAGATAAGCAGACGATAGTTATCTGTTCT

>In-frame_ENST00000379068_ENST00000286824_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000378482_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=4612nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC
ACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTGTAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAG
GTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTGCATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATC
ATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCTGCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATG
CCACACACCTTTAAGTAGATAAGCAGACGATAGTTATCTGTTCTTTTGACTTAATCTCATTTGGTTTGATTTTCCCTCTACTAAGGCTTT
CCTACCTTCTTCAGGCTGCCTAAGACATGTAACGAAACACTTCAATAATTGTCCATGAGGAGAAAAAAAGCATGTGTCATGCATGAAGGA
AACTGAACTTGAGGTGGCCTCCTTGCTTGTTACATACCTGGGTATGTGTAGGCAGTTTAGTGCATCTTTGCCTCTCGGTTGAAACCTGTA
TAACCCTGTTACAAAGCTGTGTTGTTGCTTCTTGTGAAGGCCATGATATTTTGTTTTTCCCCAATTAATTGCTATTGTGTTATTTTACTA
CTTCTCTCTGTATTTTTTCTTGCATTGACATTATAGACATTGAGGACCTCATCCAAACAATTTAAAAATGAGTGTGAAGGGGGAACAAGT
CAAAATATTTTTAAAAGATCTTCAAAAGTAATGCCTCTGTCTAGCATGCCAACAAGAATGCATTGATATTGTGAACATTTGTGATATATG

>In-frame_ENST00000379059_ENST00000378482_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000422612_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=3867nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC

>In-frame_ENST00000379059_ENST00000422612_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000545599_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=3970nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC
ACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTGTAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAG
GTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTGCATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATC

>In-frame_ENST00000379059_ENST00000545599_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000286824_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(transcript)=4096nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC
ACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTGTAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAG
GTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTGCATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATC
ATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCTGCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATG

>In-frame_ENST00000379059_ENST00000286824_TCGA-13-1407-01A_POLA1_chrX_24767109_+_TSPAN7_chrX_38525375_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000378482_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=4658nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG
TAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAGGTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTG
CATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATCATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCT
GCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATGCCACACACCTTTAAGTAGATAAGCAGACGATAGTTATCTGTTCT
TTTGACTTAATCTCATTTGGTTTGATTTTCCCTCTACTAAGGCTTTCCTACCTTCTTCAGGCTGCCTAAGACATGTAACGAAACACTTCA
ATAATTGTCCATGAGGAGAAAAAAAGCATGTGTCATGCATGAAGGAAACTGAACTTGAGGTGGCCTCCTTGCTTGTTACATACCTGGGTA
TGTGTAGGCAGTTTAGTGCATCTTTGCCTCTCGGTTGAAACCTGTATAACCCTGTTACAAAGCTGTGTTGTTGCTTCTTGTGAAGGCCAT
GATATTTTGTTTTTCCCCAATTAATTGCTATTGTGTTATTTTACTACTTCTCTCTGTATTTTTTCTTGCATTGACATTATAGACATTGAG
GACCTCATCCAAACAATTTAAAAATGAGTGTGAAGGGGGAACAAGTCAAAATATTTTTAAAAGATCTTCAAAAGTAATGCCTCTGTCTAG

>In-frame_ENST00000379068_ENST00000378482_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000422612_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=3913nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG

>In-frame_ENST00000379068_ENST00000422612_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000545599_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=4016nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG
TAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAGGTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTG

>In-frame_ENST00000379068_ENST00000545599_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379068_ENST00000286824_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=4142nt_BP=3007nt
CCAGTTTTGGGCTGGTTGGCGCGGAATCGGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTGTGAGATAGGGGCGAGTGCTCT
GTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAAAAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAA
GGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACAGGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGT
TCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATTGGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGA
AGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCACGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAA
ACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAAACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGG
TGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCACCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTC
ACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGAAAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCC
TGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTCGAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGA
AGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTGGAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGC
AGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCCTACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGA
TCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGATTCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGT
ATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAACCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGC
CGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGAACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATAC
GGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAGGAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTT
CAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGATGTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGA
AATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCATGTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAA
CAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAGCTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGC
TTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGC
AAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCATCACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCA
GTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCATATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGA
GGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAAGTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTA
TGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAAGCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACAT
GCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACCTGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATT
GATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATTCTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAA
TATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACCTGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAA
TGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATTATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTT
CTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGACAAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGA
TGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAGAAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGG
TTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATATCCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACA
AAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAAGAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCAT
TTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTCAAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCT
TCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGTATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAA
ACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGG
CACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTT
TGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGC
TGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGA
TGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTT
CCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAA
AGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAGACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATT
CTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCA
AGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATAC
ACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGACACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTG
TAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAGGTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTG
CATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATCATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCT
GCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATGCCACACACCTTTAAGTAGATAAGCAGACGATAGTTATCTGTTCT

>In-frame_ENST00000379068_ENST00000286824_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1210AA_start in transcript=43_stop in transcript=3675
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDG
IGYVEDGREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVD
LEPMAAKAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIP
DVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLA
KVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQ
ILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP
DKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGE
QEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREIT
GVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDT
FLRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFM

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000378482_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=4612nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC
ACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTGTAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAG
GTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTGCATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATC
ATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCTGCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATG
CCACACACCTTTAAGTAGATAAGCAGACGATAGTTATCTGTTCTTTTGACTTAATCTCATTTGGTTTGATTTTCCCTCTACTAAGGCTTT
CCTACCTTCTTCAGGCTGCCTAAGACATGTAACGAAACACTTCAATAATTGTCCATGAGGAGAAAAAAAGCATGTGTCATGCATGAAGGA
AACTGAACTTGAGGTGGCCTCCTTGCTTGTTACATACCTGGGTATGTGTAGGCAGTTTAGTGCATCTTTGCCTCTCGGTTGAAACCTGTA
TAACCCTGTTACAAAGCTGTGTTGTTGCTTCTTGTGAAGGCCATGATATTTTGTTTTTCCCCAATTAATTGCTATTGTGTTATTTTACTA
CTTCTCTCTGTATTTTTTCTTGCATTGACATTATAGACATTGAGGACCTCATCCAAACAATTTAAAAATGAGTGTGAAGGGGGAACAAGT
CAAAATATTTTTAAAAGATCTTCAAAAGTAATGCCTCTGTCTAGCATGCCAACAAGAATGCATTGATATTGTGAACATTTGTGATATATG

>In-frame_ENST00000379059_ENST00000378482_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000422612_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=3867nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC

>In-frame_ENST00000379059_ENST00000422612_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000545599_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=3970nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC
ACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTGTAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAG
GTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTGCATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATC

>In-frame_ENST00000379059_ENST00000545599_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------
>In-frame_ENST00000379059_ENST00000286824_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(transcript)=4096nt_BP=2961nt
GGGAGATTCGGGACCATGGCACCTGTGCACGGCGACGACTCTCTGTCAGATTCAGGGAGTTTTGTATCTTCTCGAGCCCGGCGAGAAAAA
AAATCAAAGAAGGGGCGCCAAGAAGCCCTAGAAAGACTGAAAAAGGCTAAAGCTGGTGAGAAGTATAAATATGAAGTCGAGGACTTCACA
GGTGTTTATGAAGAAGTTGATGAAGAACAGTATTCGAAGCTGGTTCAGGCACGCCAGGATGATGACTGGATTGTGGATGATGATGGTATT
GGCTATGTGGAAGATGGCCGAGAGATTTTTGATGATGACCTTGAAGATGATGCCCTTGATGCTGATGAGAAAGGAAAAGATGGTAAAGCA
CGCAATAAAGACAAGAGGAATGTAAAGAAGCTCGCAGTGACAAAACCGAACAACATTAAGTCAATGTTCATTGCTTGTGCTGGAAAGAAA
ACTGCAGATAAAGCTGTAGACTTGTCCAAGGATGGTCTGCTAGGTGACATTCTACAGGATCTTAACACTGAGACACCTCAAATAACTCCA
CCACCTGTAATGATACTGAAGAAGAAAAGATCCATTGGAGCTTCACCGAATCCTTTCTCTGTGCACACCGCCACGGCAGTTCCTTCAGGA
AAAATTGCTTCCCCTGTCTCCAGAAAGGAGCCTCCATTAACTCCTGTTCCTCTTAAACGTGCTGAATTTGCTGGCGATGATGTACAGGTC
GAGAGTACAGAAGAAGAGCAGGAGTCAGGGGCAATGGAGTTTGAAGATGGTGACTTTGATGAGCCCATGGAAGTTGAAGAGGTGGACCTG
GAGCCTATGGCTGCCAAGGCTTGGGACAAAGAGAGTGAGCCAGCAGAGGAAGTGAAACAAGAGGCGGATTCTGGGAAAGGGACCGTGTCC
TACTTAGGAAGTTTTCTCCCGGATGTCTCTTGTTGGGACATTGATCAAGAAGGTGATAGCAGTTTCTCAGTGCAAGAAGTTCAAGTGGAT
TCCAGTCACCTCCCATTGGTAAAAGGGGCAGATGAGGAACAAGTATTCCACTTTTATTGGTTGGATGCTTATGAGGATCAGTACAACCAA
CCAGGTGTGGTATTTCTGTTTGGGAAAGTTTGGATTGAATCAGCCGAGACCCATGTGAGCTGTTGTGTCATGGTGAAAAATATCGAGCGA
ACGCTTTACTTCCTTCCCCGTGAAATGAAAATTGATCTAAATACGGGGAAAGAAACAGGAACTCCAATTTCAATGAAGGATGTTTATGAG
GAATTTGATGAGAAAATAGCAACAAAATATAAAATTATGAAGTTCAAGTCTAAGCCAGTGGAAAAGAACTATGCTTTTGAGATACCTGAT
GTTCCAGAAAAATCTGAGTACTTGGAAGTTAAATACTCGGCTGAAATGCCACAGCTTCCTCAAGATTTGAAAGGAGAAACTTTTTCTCAT
GTATTTGGGACCAACACATCTAGCCTGGAACTGTTCTTGATGAACAGAAAGATCAAAGGACCTTGTTGGCTTGAAGTAAAAAGTCCACAG
CTCTTGAATCAGCCAGTCAGTTGGTGTAAAGTTGAGGCAATGGCTTTGAAACCAGACCTGGTGAATGTAATTAAGGATGTCAGTCCACCA
CCGCTTGTCGTGATGGCTTTCAGCATGAAGACAATGCAGAATGCAAAGAACCATCAAAATGAGATTATTGCTATGGCAGCTTTGGTCCAT
CACAGTTTTGCATTGGATAAAGCAGCCCCAAAGCCTCCCTTTCAGTCACACTTCTGTGTTGTGTCTAAACCAAAGGACTGTATTTTTCCA
TATGCTTTCAAAGAAGTCATTGAGAAAAAGAATGTGAAGGTTGAGGTTGCTGCAACAGAAAGAACACTGCTAGGTTTTTTCCTTGCAAAA
GTTCACAAAATTGATCCTGATATCATTGTGGGTCATAATATTTATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTGTGCAAA
GCTCCTCACTGGTCCAAGATAGGTCGACTGAAGCGATCCAACATGCCAAAGCTTGGGGGCCGGAGTGGATTTGGTGAAAGAAATGCTACC
TGTGGTCGAATGATCTGTGATGTGGAAATTTCAGCAAAGGAATTGATTCGTTGTAAAAGCTACCATCTGTCTGAACTTGTTCAGCAGATT
CTAAAAACTGAAAGGGTTGTAATCCCAATGGAAAATATACAAAATATGTACAGTGAATCTTCTCAACTGTTATACCTGTTGGAACACACC
TGGAAAGATGCCAAGTTCATTTTGCAGATCATGTGTGAGCTAAATGTTCTTCCATTAGCATTGCAGATCACTAACATCGCTGGGAACATT
ATGTCCAGGACGCTGATGGGTGGACGATCCGAGCGTAACGAGTTCTTGTTGCTTCATGCATTTTACGAAAACAACTATATTGTGCCTGAC
AAGCAGATTTTCAGAAAGCCTCAGCAAAAACTGGGAGATGAAGATGAAGAAATTGATGGAGATACCAATAAATACAAGAAAGGACGTAAG
AAAGCAGCTTATGCTGGAGGCTTGGTTTTGGACCCCAAAGTTGGTTTTTATGATAAGTTCATTTTGCTTCTGGACTTCAACAGTCTATAT
CCTTCCATCATTCAGGAATTTAACATTTGTTTTACAACAGTACAAAGAGTTGCTTCAGAGGCACAGAAAGTTACAGAGGATGGAGAACAA
GAACAGATCCCTGAGTTGCCAGATCCAAGCTTAGAAATGGGCATTTTGCCCAGAGAGATCCGGAAACTGGTAGAACGGAGAAAACAAGTC
AAACAGCTAATGAAACAGCAAGACTTAAATCCAGACCTTATTCTTCAGTATGACATTCGACAGAAGGCTTTGAAGCTCACAGCGAACAGT
ATGTATGGTTGCCTGGGATTTTCCTATAGCAGATTTTACGCCAAACCACTGGCTGCCTTGGTGACATACAAAGGAAGGGAGATCACTGGG
GTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTAT
GTGCTCATCGGAACTGGCACCACTATTGTTGTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTG
TATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAAGGACACCTTC
CTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCAGTGGACCATGTGCAGCGCAGCCTGAGCTGC
TGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCTACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGAT
TGTAATCCCCAGGATCTACACAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGGCCTGCTGTCTGTCCCGGTTC
ATCACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGAATAAGAGACCTGTTTTAAAAAGGAACTGCAGCAAT
CTTTGAAAGACTTCCAAAGAATGTTAGAGCACAGTACATAATACACTTGCCCTGCTCCCTCTCCCCCTTACCCCACAACGTGCAACTGAC
ACTCCCACCCAGTCTCTGCTCCACCTTTCAGCCCACGTCACGTGTAGTGTCCATTTTGTGAAGCCCTGTTGTGCCACAGAGTGTAGCCAG
GTCCCCCTGCAGCTAGTCCTAGTGAACCTCACCCCGAGGCCCTGCATGGGCCAGCCCCTCCATCTGTACTTGGTCCAACTGCAACTCATC
ATCGGTGACTGGTTATCACACCATCGCTGGCCCCTTTGGGCCCTGCATGTAGTGTGGGAGGCTCCTGTTAGCTCCTCACTGTGGTAAATG

>In-frame_ENST00000379059_ENST00000286824_TCGA-13-1407_POLA1_chrX_24767109_+_TSPAN7_chrX_38525374_length(amino acids)=1204AA_start in transcript=15_stop in transcript=3629
MAPVHGDDSLSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVED
GREIFDDDLEDDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQITPPPVMI
LKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQVESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAA
KAWDKESEPAEEVKQEADSGKGTVSYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVF
LFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKS
EYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSPPPLVVM
AFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKID
PDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTER
VVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR
KPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE
LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREITGVILLA
VGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYT
DAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGI

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for POLA1-TSPAN7


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for POLA1-TSPAN7


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for POLA1-TSPAN7


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePOLA1C1845050PIGMENTARY DISORDER, RETICULATE, WITH SYSTEMIC MANIFESTATIONS3CTD_human;GENOMICS_ENGLAND;ORPHANET
HgenePOLA1C0796250PARTINGTON X-LINKED MENTAL RETARDATION SYNDROME1ORPHANET
HgenePOLA1C3860213Autoinflammatory disorder1GENOMICS_ENGLAND
TgeneTSPAN7C1846174Mental Retardation, X-Linked 583CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneTSPAN7C2931498Mental Retardation, X-Linked 12ORPHANET