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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:POLR1A-CTNNA2 (FusionGDB2 ID:66559) |
Fusion Gene Summary for POLR1A-CTNNA2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: POLR1A-CTNNA2 | Fusion gene ID: 66559 | Hgene | Tgene | Gene symbol | POLR1A | CTNNA2 | Gene ID | 25885 | 1496 |
| Gene name | RNA polymerase I subunit A | catenin alpha 2 | |
| Synonyms | A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 | CAP-R|CAPR|CDCBM9|CT114|CTNR | |
| Cytomap | 2p11.2 | 2p12 | |
| Type of gene | protein-coding | protein-coding | |
| Description | DNA-directed RNA polymerase I subunit RPA1DNA-directed RNA polymerase I largest subunitDNA-directed RNA polymerase I subunit ADNA-directed RNA polymerase I subunit A1RNA polymerase I 194 kDa subunitpolymerase (RNA) I polypeptide A, 194kDapolymerase | catenin alpha-2alpha-N-cateninalpha-catenin-related proteincadherin-associated protein, relatedcancer/testis antigen 114catenin (cadherin-associated protein), alpha 2 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | P26232 | |
| Ensembl transtripts involved in fusion gene | ENST00000263857, ENST00000409681, ENST00000483538, | ENST00000466387, ENST00000496558, ENST00000361291, ENST00000402739, ENST00000540488, ENST00000541047, ENST00000343114, ENST00000496251, ENST00000409266, | |
| Fusion gene scores | * DoF score | 6 X 6 X 5=180 | 26 X 24 X 10=6240 |
| # samples | 7 | 28 | |
| ** MAII score | log2(7/180*10)=-1.36257007938471 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(28/6240*10)=-4.47804729680464 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: POLR1A [Title/Abstract] AND CTNNA2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | POLR1A(86265823)-CTNNA2(80831199), # samples:3 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across POLR1A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across CTNNA2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | READ | TCGA-EF-5831-01A | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| ChimerDB4 | READ | TCGA-EF-5831 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| ChimerDB4 | READ | TCGA-EF-5831 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| ChimerDB4 | READ | TCGA-EF-5831-01A | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
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Fusion Gene ORF analysis for POLR1A-CTNNA2 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000263857 | ENST00000466387 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000496558 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000361291 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000402739 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000540488 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000541047 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000343114 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| 5CDS-intron | ENST00000263857 | ENST00000496251 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| 5CDS-intron | ENST00000263857 | ENST00000409266 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000466387 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000496558 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000361291 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000402739 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000540488 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000541047 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000409681 | ENST00000343114 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| 5CDS-intron | ENST00000409681 | ENST00000496251 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| 5CDS-intron | ENST00000409681 | ENST00000409266 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000466387 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000496558 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000361291 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000402739 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000540488 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000541047 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-3CDS | ENST00000483538 | ENST00000343114 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-intron | ENST00000483538 | ENST00000496251 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| intron-intron | ENST00000483538 | ENST00000409266 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + |
| In-frame | ENST00000263857 | ENST00000466387 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000263857 | ENST00000496558 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000263857 | ENST00000361291 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000263857 | ENST00000402739 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000263857 | ENST00000540488 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000263857 | ENST00000541047 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000263857 | ENST00000343114 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| 5CDS-intron | ENST00000263857 | ENST00000496251 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| 5CDS-intron | ENST00000263857 | ENST00000409266 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000466387 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000496558 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000361291 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000402739 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000540488 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000541047 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| In-frame | ENST00000409681 | ENST00000343114 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| 5CDS-intron | ENST00000409681 | ENST00000496251 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| 5CDS-intron | ENST00000409681 | ENST00000409266 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000466387 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000496558 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000361291 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000402739 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000540488 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000541047 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-3CDS | ENST00000483538 | ENST00000343114 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-intron | ENST00000483538 | ENST00000496251 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| intron-intron | ENST00000483538 | ENST00000409266 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000466387 | CTNNA2 | chr2 | 80831199 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000496558 | CTNNA2 | chr2 | 80831199 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000361291 | CTNNA2 | chr2 | 80831199 | + | 4942 | 4413 | 346 | 4941 | 1532 |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000402739 | CTNNA2 | chr2 | 80831199 | + | 5903 | 4413 | 346 | 5085 | 1579 |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000540488 | CTNNA2 | chr2 | 80831199 | + | 4807 | 4413 | 346 | 4806 | 1487 |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000541047 | CTNNA2 | chr2 | 80831199 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265823 | - | ENST00000343114 | CTNNA2 | chr2 | 80831199 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000466387 | CTNNA2 | chr2 | 80831199 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000496558 | CTNNA2 | chr2 | 80831199 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000361291 | CTNNA2 | chr2 | 80831199 | + | 4942 | 4413 | 346 | 4941 | 1532 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000402739 | CTNNA2 | chr2 | 80831199 | + | 5903 | 4413 | 346 | 5085 | 1579 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000540488 | CTNNA2 | chr2 | 80831199 | + | 4807 | 4413 | 346 | 4806 | 1487 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000541047 | CTNNA2 | chr2 | 80831199 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265823 | - | ENST00000343114 | CTNNA2 | chr2 | 80831199 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000466387 | CTNNA2 | chr2 | 80831198 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000496558 | CTNNA2 | chr2 | 80831198 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000361291 | CTNNA2 | chr2 | 80831198 | + | 4942 | 4413 | 346 | 4941 | 1532 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000402739 | CTNNA2 | chr2 | 80831198 | + | 5903 | 4413 | 346 | 5085 | 1579 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000540488 | CTNNA2 | chr2 | 80831198 | + | 4807 | 4413 | 346 | 4806 | 1487 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000541047 | CTNNA2 | chr2 | 80831198 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000263857 | POLR1A | chr2 | 86265822 | - | ENST00000343114 | CTNNA2 | chr2 | 80831198 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000466387 | CTNNA2 | chr2 | 80831198 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000496558 | CTNNA2 | chr2 | 80831198 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000361291 | CTNNA2 | chr2 | 80831198 | + | 4942 | 4413 | 346 | 4941 | 1532 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000402739 | CTNNA2 | chr2 | 80831198 | + | 5903 | 4413 | 346 | 5085 | 1579 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000540488 | CTNNA2 | chr2 | 80831198 | + | 4807 | 4413 | 346 | 4806 | 1487 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000541047 | CTNNA2 | chr2 | 80831198 | + | 5849 | 4413 | 346 | 4941 | 1531 |
| ENST00000409681 | POLR1A | chr2 | 86265822 | - | ENST00000343114 | CTNNA2 | chr2 | 80831198 | + | 5850 | 4413 | 346 | 4941 | 1531 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000263857 | ENST00000466387 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001485689 | 0.99851435 |
| ENST00000263857 | ENST00000496558 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001486888 | 0.99851316 |
| ENST00000263857 | ENST00000361291 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.002478783 | 0.9975212 |
| ENST00000263857 | ENST00000402739 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.000949052 | 0.9990509 |
| ENST00000263857 | ENST00000540488 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.002600446 | 0.99739957 |
| ENST00000263857 | ENST00000541047 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001485689 | 0.99851435 |
| ENST00000263857 | ENST00000343114 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001486888 | 0.99851316 |
| ENST00000409681 | ENST00000466387 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001485689 | 0.99851435 |
| ENST00000409681 | ENST00000496558 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001486888 | 0.99851316 |
| ENST00000409681 | ENST00000361291 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.002478783 | 0.9975212 |
| ENST00000409681 | ENST00000402739 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.000949052 | 0.9990509 |
| ENST00000409681 | ENST00000540488 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.002600446 | 0.99739957 |
| ENST00000409681 | ENST00000541047 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001485689 | 0.99851435 |
| ENST00000409681 | ENST00000343114 | POLR1A | chr2 | 86265823 | - | CTNNA2 | chr2 | 80831199 | + | 0.001486888 | 0.99851316 |
| ENST00000263857 | ENST00000466387 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001485689 | 0.99851435 |
| ENST00000263857 | ENST00000496558 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001486888 | 0.99851316 |
| ENST00000263857 | ENST00000361291 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.002478783 | 0.9975212 |
| ENST00000263857 | ENST00000402739 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.000949052 | 0.9990509 |
| ENST00000263857 | ENST00000540488 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.002600446 | 0.99739957 |
| ENST00000263857 | ENST00000541047 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001485689 | 0.99851435 |
| ENST00000263857 | ENST00000343114 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001486888 | 0.99851316 |
| ENST00000409681 | ENST00000466387 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001485689 | 0.99851435 |
| ENST00000409681 | ENST00000496558 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001486888 | 0.99851316 |
| ENST00000409681 | ENST00000361291 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.002478783 | 0.9975212 |
| ENST00000409681 | ENST00000402739 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.000949052 | 0.9990509 |
| ENST00000409681 | ENST00000540488 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.002600446 | 0.99739957 |
| ENST00000409681 | ENST00000541047 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001485689 | 0.99851435 |
| ENST00000409681 | ENST00000343114 | POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.001486888 | 0.99851316 |
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Fusion Genomic Features for POLR1A-CTNNA2 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.3503886 | 0.6496115 |
| POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.3503886 | 0.6496115 |
| POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.3503886 | 0.6496115 |
| POLR1A | chr2 | 86265822 | - | CTNNA2 | chr2 | 80831198 | + | 0.3503886 | 0.6496115 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for POLR1A-CTNNA2 |
| Go to FGviewer for the breakpoints of chr2:86265823-chr2:80831199 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | CTNNA2 |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: May function as a linker between cadherin adhesion receptors and the cytoskeleton to regulate cell-cell adhesion and differentiation in the nervous system (By similarity). Required for proper regulation of cortical neuronal migration and neurite growth (PubMed:30013181). It acts as negative regulator of Arp2/3 complex activity and Arp2/3-mediated actin polymerization (PubMed:30013181). It thereby suppresses excessive actin branching which would impair neurite growth and stability (PubMed:30013181). Regulates morphological plasticity of synapses and cerebellar and hippocampal lamination during development. Functions in the control of startle modulation (By similarity). {ECO:0000250|UniProtKB:Q61301, ECO:0000269|PubMed:30013181}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | POLR1A | chr2:86265822 | chr2:80831198 | ENST00000263857 | - | 27 | 34 | 961_973 | 1344.6666666666667 | 1721.0 | Region | Bridging helix |
| Hgene | POLR1A | chr2:86265823 | chr2:80831199 | ENST00000263857 | - | 27 | 34 | 961_973 | 1344.6666666666667 | 1721.0 | Region | Bridging helix |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for POLR1A-CTNNA2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000263857_ENST00000466387_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000263857_ENST00000466387_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000496558_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000263857_ENST00000496558_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000361291_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=4942nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC >In-frame_ENST00000263857_ENST00000361291_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1532AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000402739_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5903nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGACAGGAGTTCAGAGCACTTTCACTAC CTTTTATGAGGTAGATTGTGATGTCATAGATGGGGGCAGGGCTAGTCAACTTTCTACCCACCTCCCAACCTGTGCTGAGGGAGCTCCGAT CGGGAGTGGAAGCAGTGATTCCTCCATGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCAC GGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAA GGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTC GCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAGGTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCT TTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCTCTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTG CATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGAGACAGGACATTCCTGTACTAAGGTGGCACAGAGCTG TCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATTTATGGGAGTGGGAGGGATGGGGAAAATAAACTTAAC TCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATGCATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACA TAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTAAGTGTGTGGCCCATGAATTGAACAATTTAACCTTGA AGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTCCAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTT CCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGAAAACAATAAACATCTATTTGAGACAATTAAAATCCT TCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTTCTTTTTAATTTGAACCATGATTTTGCTAGAAATAGA >In-frame_ENST00000263857_ENST00000402739_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1579AA_start in transcript=346_stop in transcript=5085 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGTGVQ STFTTFYEVDCDVIDGGRASQLSTHLPTCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVV -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000540488_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=4807nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGC ATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGA GAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACA >In-frame_ENST00000263857_ENST00000540488_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1487AA_start in transcript=346_stop in transcript=4806 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWK -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000541047_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000263857_ENST00000541047_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000343114_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000263857_ENST00000343114_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000466387_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000409681_ENST00000466387_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000496558_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000409681_ENST00000496558_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000361291_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=4942nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC >In-frame_ENST00000409681_ENST00000361291_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1532AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000402739_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5903nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGACAGGAGTTCAGAGCACTTTCACTAC CTTTTATGAGGTAGATTGTGATGTCATAGATGGGGGCAGGGCTAGTCAACTTTCTACCCACCTCCCAACCTGTGCTGAGGGAGCTCCGAT CGGGAGTGGAAGCAGTGATTCCTCCATGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCAC GGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAA GGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTC GCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAGGTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCT TTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCTCTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTG CATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGAGACAGGACATTCCTGTACTAAGGTGGCACAGAGCTG TCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATTTATGGGAGTGGGAGGGATGGGGAAAATAAACTTAAC TCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATGCATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACA TAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTAAGTGTGTGGCCCATGAATTGAACAATTTAACCTTGA AGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTCCAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTT CCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGAAAACAATAAACATCTATTTGAGACAATTAAAATCCT TCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTTCTTTTTAATTTGAACCATGATTTTGCTAGAAATAGA >In-frame_ENST00000409681_ENST00000402739_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1579AA_start in transcript=346_stop in transcript=5085 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGTGVQ STFTTFYEVDCDVIDGGRASQLSTHLPTCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVV -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000540488_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=4807nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGC ATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGA GAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACA >In-frame_ENST00000409681_ENST00000540488_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1487AA_start in transcript=346_stop in transcript=4806 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWK -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000541047_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000409681_ENST00000541047_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000343114_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000409681_ENST00000343114_TCGA-EF-5831-01A_POLR1A_chr2_86265823_-_CTNNA2_chr2_80831199_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000466387_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000263857_ENST00000466387_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000496558_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000263857_ENST00000496558_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000361291_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=4942nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC >In-frame_ENST00000263857_ENST00000361291_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1532AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000402739_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5903nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGACAGGAGTTCAGAGCACTTTCACTAC CTTTTATGAGGTAGATTGTGATGTCATAGATGGGGGCAGGGCTAGTCAACTTTCTACCCACCTCCCAACCTGTGCTGAGGGAGCTCCGAT CGGGAGTGGAAGCAGTGATTCCTCCATGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCAC GGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAA GGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTC GCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAGGTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCT TTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCTCTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTG CATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGAGACAGGACATTCCTGTACTAAGGTGGCACAGAGCTG TCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATTTATGGGAGTGGGAGGGATGGGGAAAATAAACTTAAC TCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATGCATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACA TAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTAAGTGTGTGGCCCATGAATTGAACAATTTAACCTTGA AGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTCCAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTT CCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGAAAACAATAAACATCTATTTGAGACAATTAAAATCCT TCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTTCTTTTTAATTTGAACCATGATTTTGCTAGAAATAGA >In-frame_ENST00000263857_ENST00000402739_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1579AA_start in transcript=346_stop in transcript=5085 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGTGVQ STFTTFYEVDCDVIDGGRASQLSTHLPTCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVV -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000540488_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=4807nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGC ATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGA GAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACA >In-frame_ENST00000263857_ENST00000540488_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1487AA_start in transcript=346_stop in transcript=4806 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWK -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000541047_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000263857_ENST00000541047_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000263857_ENST00000343114_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000263857_ENST00000343114_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000466387_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000409681_ENST00000466387_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000496558_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000409681_ENST00000496558_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000361291_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=4942nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC >In-frame_ENST00000409681_ENST00000361291_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1532AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000402739_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5903nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGACAGGAGTTCAGAGCACTTTCACTAC CTTTTATGAGGTAGATTGTGATGTCATAGATGGGGGCAGGGCTAGTCAACTTTCTACCCACCTCCCAACCTGTGCTGAGGGAGCTCCGAT CGGGAGTGGAAGCAGTGATTCCTCCATGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCAC GGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAA GGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTC GCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAGGTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCT TTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCTCTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTG CATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGAGACAGGACATTCCTGTACTAAGGTGGCACAGAGCTG TCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATTTATGGGAGTGGGAGGGATGGGGAAAATAAACTTAAC TCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATGCATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACA TAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTAAGTGTGTGGCCCATGAATTGAACAATTTAACCTTGA AGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTCCAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTT CCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGAAAACAATAAACATCTATTTGAGACAATTAAAATCCT TCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTTCTTTTTAATTTGAACCATGATTTTGCTAGAAATAGA >In-frame_ENST00000409681_ENST00000402739_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1579AA_start in transcript=346_stop in transcript=5085 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGTGVQ STFTTFYEVDCDVIDGGRASQLSTHLPTCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVV -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000540488_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=4807nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGCTGGACAGTGCCACATCGCTTATCCAGGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGC ATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGCAGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGA GAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGACACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACA >In-frame_ENST00000409681_ENST00000540488_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1487AA_start in transcript=346_stop in transcript=4806 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQLDSATSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWK -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000541047_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5849nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG >In-frame_ENST00000409681_ENST00000541047_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- >In-frame_ENST00000409681_ENST00000343114_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(transcript)=5850nt_BP=4413nt ATTGGCTGAAGCGGAAGAAGACGAAAGCAATCATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGACTTCGTCACGGAAGCTAAAAGC TCTATACACCCGATTTGCCTCGGAGGAATTTTCCTAAATGATTATTTTGATGTCTTATATATCTTTGATTGTTTTCAAAACAAAAGAGCG AGCAGAGAGTCGTACAACTATTTGTTCCCCCCCCATGTAGAAGTGATCTCATCCACGTAAATGTCGTTCCTGCGACCGCTTCCGCGCGCA AGCGCACGTTGAATCGCGTGGTGACTCCGGGCTTGAGGTTGAATTAAGAATAGTCAGGTGGTGAGTGGAACGTCTCTTGGGGTGTCGGAA TTCAAAACGGACCTGGAGGATGTTGATCTCCAAGAACATGCCCTGGCGGCGGCTGCAGGGCATTTCCTTCGGGATGTATTCGGCTGAAGA GCTCAAGAAATTAAGTGTTAAATCCATTACGAACCCTCGATACCTGGACAGCCTGGGGAACCCATCGGCAAACGGCCTGTACGATTTAGC TTTGGGCCCTGCAGATTCCAAAGAGGTGTGCTCCACCTGCGTGCAGGACTTCAGCAACTGTTCTGGGCACCTGGGCCACATTGAGCTCCC ACTCACAGTGTATAACCCTCTCCTCTTCGATAAGCTGTACCTGCTGCTTCGGGGCTCTTGTTTAAACTGCCACATGCTGACTTGTCCCCG GGCCGTGATTCACCTCTTACTCTGCCAGCTGAGGGTTCTGGAAGTCGGGGCCCTACAAGCAGTCTACGAGCTTGAGAGAATTCTGAACAG GTTTCTGGAAGAAAATCCCGATCCCTCTGCCTCTGAAATTCGGGAGGAATTAGAACAATACACAACTGAAATTGTGCAGAACAACCTCCT GGGGTCCCAGGGCGCACATGTAAAGAACGTGTGTGAGAGCAAGAGCAAGCTCATTGCTCTCTTCTGGAAGGCACATATGAATGCTAAGCG CTGTCCCCACTGCAAGACCGGGCGATCCGTTGTCCGAAAGGAACACAACAGCAAGTTGACTATCACGTTTCCAGCCATGGTGCACAGGAC AGCTGGCCAGAAGGACTCTGAGCCCCTGGGAATTGAGGAAGCTCAGATAGGAAAACGAGGATACTTAACACCCACCAGTGCCCGCGAACA CCTTTCTGCCCTGTGGAAGAATGAAGGATTCTTTCTGAACTACCTTTTTTCGGGAATGGATGATGATGGTATGGAATCCAGATTCAATCC CAGTGTGTTCTTTCTAGATTTCTTGGTGGTGCCGCCCTCAAGGTATCGCCCAGTCAGTCGCCTAGGAGACCAGATGTTTACTAATGGCCA GACGGTGAACTTGCAGGCTGTCATGAAGGATGTAGTTCTGATTCGAAAACTTCTGGCATTGATGGCCCAAGAACAGAAGTTGCCAGAGGA AGTGGCCACACCCACTACAGATGAGGAAAAAGACTCTTTGATTGCTATTGACCGATCCTTTTTGAGTACACTTCCAGGCCAGTCCCTCAT AGACAAACTTTACAACATTTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGATAGCGAGATGGACAAACTAATGATGGACAAGTA CCCAGGCATTAGGCAGATCCTGGAGAAGAAAGAAGGCCTGTTCCGAAAACACATGATGGGAAAGCGAGTGGACTACGCTGCGCGCTCAGT CATCTGCCCAGACATGTACATCAACACCAACGAAATTGGAATTCCCATGGTGTTTGCCACAAAACTGACCTACCCACAGCCAGTTACCCC ATGGAATGTTCAGGAACTTAGGCAAGCGGTCATCAACGGCCCTAATGTGCACCCAGGAGCCTCCATGGTCATCAATGAGGACGGCAGCCG CACAGCCCTGAGCGCTGTGGACATGACCCAGCGAGAGGCCGTGGCCAAGCAGCTTCTGACCCCAGCCACGGGGGCACCTAAGCCCCAGGG GACAAAAATTGTGTGCCGGCATGTGAAGAATGGGGACATTCTGCTACTGAACCGACAGCCCACACTGCACAGACCCTCCATCCAGGCCCA CCGTGCCCGCATCCTGCCTGAAGAGAAAGTGCTGCGGCTCCACTATGCCAACTGCAAGGCCTATAATGCCGACTTTGATGGAGACGAGAT GAATGCCCATTTCCCCCAGAGTGAGCTGGGCCGGGCCGAGGCCTACGTCCTGGCCTGCACTGATCAGCAGTACCTTGTTCCCAAGGATGG CCAACCATTGGCGGGACTGATCCAGGATCACATGGTTTCAGGGGCAAGCATGACTACTCGGGGTTGCTTTTTCACCCGGGAGCACTATAT GGAGCTGGTGTACCGAGGACTCACGGACAAAGTGGGGCGCGTGAAGCTCCTTTCTCCTTCCATCCTGAAGCCCTTTCCGCTGTGGACAGG AAAACAGGTTGTGTCAACGCTGCTCATAAATATAATCCCAGAGGACCACATCCCACTGAACTTATCTGGAAAGGCGAAAATCACTGGGAA AGCCTGGGTGAAGGAAACTCCTCGATCCGTTCCTGGCTTTAACCCTGACTCGATGTGCGAGTCCCAGGTGATCATCAGGGAAGGGGAGCT GCTCTGCGGAGTGCTGGACAAGGCGCACTATGGGAGCTCCGCCTACGGCCTGGTCCACTGCTGCTATGAGATCTATGGAGGCGAGACCAG CGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCAGCTCTACAGAGGCTTCACCTTGGGCGTGGAAGACATTTTGGT GAAGCCAAAGGCAGATGTCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAGGCTGTCAGGGCTGCATTAAACCTGCC AGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAA GTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCT GCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAGATCTCGTGCCTGCTGGGCCAGATTGAACTGGAAGGTCG GAGACCCCCGCTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTATGAGTTCACCCCCAGGGCTGGTGGCTTTGTCACTGGCAG GTTCCTCACCGGCATCAAACCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAGGGCCTGGTGGACACTGCTGTGAAAACCAGCCG CTCAGGCTATCTCCAAAGGTGCATCATCAAGCACCTAGAGGGGCTGGTCGTGCAGTATGATCTCACGGTCCGTGACAGTGACGGCAGTGT GGTGCAGTTCCTGTATGGGGAGGATGGCCTGGACATCCCCAAGACACAGTTCCTGCAGCCCAAGCAGTTCCCCTTCCTGGCCAGCAACTA CGAGGTGATAATGAAATCACAGCATCTCCATGAAGTTTTATCCAGAGCAGATCCCAAAAAAGCTCTCCACCACTTCAGAGCTATCAAAAA ATGGCAAAGCAAGCACCCCAACACCCTGCTGAGAAGAGGCGCCTTCTTGAGTTATTCCCAGAAAATTCAGGAAGCTGTGAAAGCCCTGAA ACTTGAGAGTGAAAACCGCAATGGCCGCAGCCCTGGGACTCAGGAGATGCTGAGGATGTGGTATGAGTTGGATGAGGAAAGCCGAAGGAA ATACCAGAAGAAGGCGGCCGCTTGTCCTGACCCCAGTCTGTCTGTCTGGCGTCCTGACATCTACTTTGCATCAGTGTCAGAAACATTTGA AACAAAGGTTGATGACTACAGTCAAGAGTGGGCAGCTCAAACAGAGAAGAGTTATGAGAAATCAGAGCTTTCTCTCGACAGGTTGAGGAC CTTGCTGCAGCTGAAGTGGCAGCGCTCACTGTGTGAGCCGGGCGAGGCTGTGGGCCTGCTGGCTGCCCAGAGCATCGGAGAGCCCTCCAC CCAGATGACCCTCAACACCTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGGTTGCGGGAGATTCTCATGGT GGCCAGCGCCAACATCAAGACACCCATGATGAGCGTGCCCGTGCTCAACACCAAGAAAGCCCTGAAGAGAGTGAAAAGCCTGAAGAAGCA ACTCACCAGGGTGTGCTTGGGGGAGGTGTTGCAGAAAATTGACGTCCAGGAGTCCTTCTGTATGGAAGAAAAACAGAACAAATTCCAGGT GTACCAGCTGCGGTTTCAGTTCCTGCCACATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCCTGCGCTTCATGGAAAC AAGAGGCAAAGGCCCATTGAAAAATACATCTGATGTCATTAATGCTGCCAAGAAAATTGCCGAAGCAGGTTCTCGAATGGACAAATTAGC TCGTGCTGTGGCTGATCAGTGTCCTGATTCAGCATGTAAGCAGGATTTATTAGCCTACCTTCAACGAATTGCCTTGTATTGCCATCAGCT TAATATCTGCAGCAAGGTGAAGGCAGAAGTGCAGAATCTGGGAGGAGAGCTCATTGTGTCAGGGCTGGACAGTGCCACATCGCTTATCCA GGCAGCTAAAAACCTGATGAATGCTGTTGTCCTCACGGTGAAAGCATCCTATGTGGCCTCAACCAAATACCAGAAGGTCTATGGGACAGC AGCTGTCAACTCACCTGTTGTGTCTTGGAAGATGAAGGCTCCAGAGAAGAAGCCCCTTGTGAAGAGAGAAAAGCCTGAAGAATTCCAGAC ACGAGTTCGACGAGGTTCTCAGAAGAAACACATTTCGCCTGTACAGGCTTTAAGTGAATTCAAAGCAATGGATTCCTTCTAGGACGATAG GTTTTAACAAGAAAGCTTTTTCTTTCTTTTCTTTCTTTCTTTTTCTTTTTAATTCCATTTTTGTATGCATACCTGCCAGCTCGTATGCCT CTGGCATGGGGAAATTAAGGGAACAGTGTCTGTTTGCATGTAAGATGAGATGAGATCAATACTACTGATCCATCTGTAGCCTGGGAAGGA GACAGGACATTCCTGTACTAAGGTGGCACAGAGCTGTCCTTTGCAACATTCTCATAAAATTGGGCACAGAGTTCGCATTGGCGCAATATT TATGGGAGTGGGAGGGATGGGGAAAATAAACTTAACTCTACAAAAGCAAACTCTAATGCATGCAAGAATCATTAGGTTGGCAGGTATATG CATAAGTGAAAAATCTGGAAGTGTAATGGTAGAACATAAAACTTGTATTGCTTCTGTTTCAGTGCAAAAATGTACTAGCCAATACGCTTA AGTGTGTGGCCCATGAATTGAACAATTTAACCTTGAAGTCTATATCCGTGATATTATGTCGATTTTTAACTGAGGGGAAATTAACTAGTC CAGCCTAAAATGCTTCTTTTAATCTGCATTCTGTTTCCTCTTCTAGTTGTGCCATTACTAGTGATCATGTTTTTTTCCCCCCTTTAATGA AAACAATAAACATCTATTTGAGACAATTAAAATCCTTCTGGGGGCACTGGAAGCACAATACGGTGACCAATCTTGCTTTCATTTTTTTTT CTTTTTAATTTGAACCATGATTTTGCTAGAAATAGAAGGCCCAGTGGTGGAATATTAGAGGGAAGGAAACTGACAACGTGTGAAAGTTAG AGGCAAATACATAGGTGTAGCTTGGAGTGCTGGTATCTAATATACCATTGTATTCACTAACTAACTCAAAATAAACACATTTAATCTTGA >In-frame_ENST00000409681_ENST00000343114_TCGA-EF-5831_POLR1A_chr2_86265822_-_CTNNA2_chr2_80831198_length(amino acids)=1531AA_start in transcript=346_stop in transcript=4941 MGCRNSKRTWRMLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLG HIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIV QNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPT SAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQ KLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDY AARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGA PKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYL VPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKA KITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGV EDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQF PENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTA VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHF RAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASV SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDIL RFMETRGKGPLKNTSDVINAAKKIAEAGSRMDKLARAVADQCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELIVSGLDSA TSLIQAAKNLMNAVVLTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRRGSQKKHISPVQALSEFKAMDS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for POLR1A-CTNNA2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for POLR1A-CTNNA2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for POLR1A-CTNNA2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | POLR1A | C4225317 | ACROFACIAL DYSOSTOSIS, CINCINNATI TYPE | 2 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
| Hgene | POLR1A | C0025990 | Micrognathism | 1 | GENOMICS_ENGLAND |
| Hgene | POLR1A | C1332140 | Acrofacial Dysostosis | 1 | GENOMICS_ENGLAND |
| Hgene | POLR1A | C1837822 | Burn-Mckeown syndrome | 1 | ORPHANET |
| Tgene | CTNNA2 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
| Tgene | CTNNA2 | C0024623 | Malignant neoplasm of stomach | 1 | CTD_human |
| Tgene | CTNNA2 | C0036341 | Schizophrenia | 1 | PSYGENET |
| Tgene | CTNNA2 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
| Tgene | CTNNA2 | C0266463 | Lissencephaly | 1 | CTD_human |
| Tgene | CTNNA2 | C0266483 | Pachygyria | 1 | CTD_human |
| Tgene | CTNNA2 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
| Tgene | CTNNA2 | C1708349 | Hereditary Diffuse Gastric Cancer | 1 | CTD_human |
| Tgene | CTNNA2 | C1879312 | Agyria | 1 | CTD_human |
| Tgene | CTNNA2 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
| Tgene | CTNNA2 | C4748540 | CORTICAL DYSPLASIA, COMPLEX, WITH OTHER BRAIN MALFORMATIONS 9 | 1 | GENOMICS_ENGLAND |
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