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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:POLR2F-GGA1 (FusionGDB2 ID:66617) |
Fusion Gene Summary for POLR2F-GGA1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: POLR2F-GGA1 | Fusion gene ID: 66617 | Hgene | Tgene | Gene symbol | POLR2F | GGA1 | Gene ID | 5435 | 26088 |
Gene name | RNA polymerase II subunit F | golgi associated, gamma adaptin ear containing, ARF binding protein 1 | |
Synonyms | HRBP14.4|POLRF|RPABC14.4|RPABC2|RPB14.4|RPB6|RPC15 | - | |
Cytomap | 22q13.1 | 22q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | DNA-directed RNA polymerases I, II, and III subunit RPABC2DNA-directed RNA polymerase II subunit FDNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptideRNA Polymerase II subunit 14.4 kDRNA polymerases I, II, and III subunit ABC2polymerase ( | ADP-ribosylation factor-binding protein GGA1ADP-ribosylation factor binding protein 1gamma-adaptin related protein 1golgi-localized, gamma ear-containing, ARF-binding protein 1 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q9UJY5 | |
Ensembl transtripts involved in fusion gene | ENST00000407936, ENST00000405557, ENST00000442738, ENST00000460648, ENST00000488684, ENST00000606538, ENST00000470701, ENST00000608713, | ENST00000414350, ENST00000343632, ENST00000381756, ENST00000405147, ENST00000325180, ENST00000337437, ENST00000406772, ENST00000488672, | |
Fusion gene scores | * DoF score | 13 X 12 X 6=936 | 6 X 6 X 4=144 |
# samples | 14 | 6 | |
** MAII score | log2(14/936*10)=-2.74108170263844 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/144*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: POLR2F [Title/Abstract] AND GGA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | POLR2F(38363177)-GGA1(38012929), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | POLR2F-GGA1 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. POLR2F-GGA1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. POLR2F-GGA1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | POLR2F | GO:0006366 | transcription by RNA polymerase II | 9852112 |
Tgene | GGA1 | GO:0006886 | intracellular protein transport | 15886016 |
Tgene | GGA1 | GO:0008104 | protein localization | 15886016 |
Tgene | GGA1 | GO:0034394 | protein localization to cell surface | 27901063 |
Tgene | GGA1 | GO:0042147 | retrograde transport, endosome to Golgi | 15886016 |
Tgene | GGA1 | GO:0043001 | Golgi to plasma membrane protein transport | 27901063 |
Fusion gene breakpoints across POLR2F (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across GGA1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-AO-A129-01A | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
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Fusion Gene ORF analysis for POLR2F-GGA1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000407936 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000407936 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000407936 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000407936 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000407936 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000407936 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-5UTR | ENST00000407936 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-intron | ENST00000407936 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000405557 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000405557 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000405557 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000405557 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000405557 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000405557 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-5UTR | ENST00000405557 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-intron | ENST00000405557 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000442738 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000442738 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000442738 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000442738 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000442738 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000442738 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-5UTR | ENST00000442738 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-intron | ENST00000442738 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
Frame-shift | ENST00000460648 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
Frame-shift | ENST00000460648 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
Frame-shift | ENST00000460648 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
Frame-shift | ENST00000460648 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
Frame-shift | ENST00000460648 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
Frame-shift | ENST00000460648 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-5UTR | ENST00000460648 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-intron | ENST00000460648 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-3CDS | ENST00000488684 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-3CDS | ENST00000488684 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-3CDS | ENST00000488684 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-3CDS | ENST00000488684 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-3CDS | ENST00000488684 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-3CDS | ENST00000488684 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-5UTR | ENST00000488684 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
3UTR-intron | ENST00000488684 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000606538 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000606538 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000606538 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000606538 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000606538 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000606538 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-5UTR | ENST00000606538 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-intron | ENST00000606538 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000470701 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000470701 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000470701 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000470701 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000470701 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
In-frame | ENST00000470701 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-5UTR | ENST00000470701 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
5CDS-intron | ENST00000470701 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-3CDS | ENST00000608713 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-3CDS | ENST00000608713 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-3CDS | ENST00000608713 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-3CDS | ENST00000608713 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-3CDS | ENST00000608713 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-3CDS | ENST00000608713 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-5UTR | ENST00000608713 | ENST00000406772 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
intron-intron | ENST00000608713 | ENST00000488672 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000407936 | POLR2F | chr22 | 38363177 | + | ENST00000414350 | GGA1 | chr22 | 38012929 | + | 1583 | 384 | 91 | 525 | 144 |
ENST00000407936 | POLR2F | chr22 | 38363177 | + | ENST00000343632 | GGA1 | chr22 | 38012929 | + | 3029 | 384 | 91 | 2175 | 694 |
ENST00000407936 | POLR2F | chr22 | 38363177 | + | ENST00000381756 | GGA1 | chr22 | 38012929 | + | 2227 | 384 | 91 | 2226 | 712 |
ENST00000407936 | POLR2F | chr22 | 38363177 | + | ENST00000405147 | GGA1 | chr22 | 38012929 | + | 804 | 384 | 728 | 0 | 243 |
ENST00000407936 | POLR2F | chr22 | 38363177 | + | ENST00000325180 | GGA1 | chr22 | 38012929 | + | 2768 | 384 | 91 | 1914 | 607 |
ENST00000407936 | POLR2F | chr22 | 38363177 | + | ENST00000337437 | GGA1 | chr22 | 38012929 | + | 2929 | 384 | 91 | 2076 | 661 |
ENST00000405557 | POLR2F | chr22 | 38363177 | + | ENST00000414350 | GGA1 | chr22 | 38012929 | + | 1569 | 370 | 77 | 511 | 144 |
ENST00000405557 | POLR2F | chr22 | 38363177 | + | ENST00000343632 | GGA1 | chr22 | 38012929 | + | 3015 | 370 | 77 | 2161 | 694 |
ENST00000405557 | POLR2F | chr22 | 38363177 | + | ENST00000381756 | GGA1 | chr22 | 38012929 | + | 2213 | 370 | 77 | 2212 | 712 |
ENST00000405557 | POLR2F | chr22 | 38363177 | + | ENST00000405147 | GGA1 | chr22 | 38012929 | + | 790 | 370 | 714 | 1 | 238 |
ENST00000405557 | POLR2F | chr22 | 38363177 | + | ENST00000325180 | GGA1 | chr22 | 38012929 | + | 2754 | 370 | 77 | 1900 | 607 |
ENST00000405557 | POLR2F | chr22 | 38363177 | + | ENST00000337437 | GGA1 | chr22 | 38012929 | + | 2915 | 370 | 77 | 2062 | 661 |
ENST00000442738 | POLR2F | chr22 | 38363177 | + | ENST00000414350 | GGA1 | chr22 | 38012929 | + | 1617 | 418 | 125 | 559 | 144 |
ENST00000442738 | POLR2F | chr22 | 38363177 | + | ENST00000343632 | GGA1 | chr22 | 38012929 | + | 3063 | 418 | 125 | 2209 | 694 |
ENST00000442738 | POLR2F | chr22 | 38363177 | + | ENST00000381756 | GGA1 | chr22 | 38012929 | + | 2261 | 418 | 125 | 2260 | 712 |
ENST00000442738 | POLR2F | chr22 | 38363177 | + | ENST00000405147 | GGA1 | chr22 | 38012929 | + | 838 | 418 | 762 | 16 | 248 |
ENST00000442738 | POLR2F | chr22 | 38363177 | + | ENST00000325180 | GGA1 | chr22 | 38012929 | + | 2802 | 418 | 125 | 1948 | 607 |
ENST00000442738 | POLR2F | chr22 | 38363177 | + | ENST00000337437 | GGA1 | chr22 | 38012929 | + | 2963 | 418 | 125 | 2110 | 661 |
ENST00000606538 | POLR2F | chr22 | 38363177 | + | ENST00000414350 | GGA1 | chr22 | 38012929 | + | 1887 | 688 | 1008 | 544 | 154 |
ENST00000606538 | POLR2F | chr22 | 38363177 | + | ENST00000343632 | GGA1 | chr22 | 38012929 | + | 3333 | 688 | 644 | 2479 | 611 |
ENST00000606538 | POLR2F | chr22 | 38363177 | + | ENST00000381756 | GGA1 | chr22 | 38012929 | + | 2531 | 688 | 644 | 2530 | 629 |
ENST00000606538 | POLR2F | chr22 | 38363177 | + | ENST00000405147 | GGA1 | chr22 | 38012929 | + | 1108 | 688 | 1032 | 544 | 162 |
ENST00000606538 | POLR2F | chr22 | 38363177 | + | ENST00000325180 | GGA1 | chr22 | 38012929 | + | 3072 | 688 | 644 | 2218 | 524 |
ENST00000606538 | POLR2F | chr22 | 38363177 | + | ENST00000337437 | GGA1 | chr22 | 38012929 | + | 3233 | 688 | 644 | 2380 | 578 |
ENST00000470701 | POLR2F | chr22 | 38363177 | + | ENST00000414350 | GGA1 | chr22 | 38012929 | + | 1606 | 407 | 6 | 548 | 180 |
ENST00000470701 | POLR2F | chr22 | 38363177 | + | ENST00000343632 | GGA1 | chr22 | 38012929 | + | 3052 | 407 | 6 | 2198 | 730 |
ENST00000470701 | POLR2F | chr22 | 38363177 | + | ENST00000381756 | GGA1 | chr22 | 38012929 | + | 2250 | 407 | 6 | 2249 | 747 |
ENST00000470701 | POLR2F | chr22 | 38363177 | + | ENST00000405147 | GGA1 | chr22 | 38012929 | + | 827 | 407 | 751 | 59 | 230 |
ENST00000470701 | POLR2F | chr22 | 38363177 | + | ENST00000325180 | GGA1 | chr22 | 38012929 | + | 2791 | 407 | 6 | 1937 | 643 |
ENST00000470701 | POLR2F | chr22 | 38363177 | + | ENST00000337437 | GGA1 | chr22 | 38012929 | + | 2952 | 407 | 6 | 2099 | 697 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000407936 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.004652217 | 0.9953478 |
ENST00000407936 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006179631 | 0.99382037 |
ENST00000407936 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.018329214 | 0.98167086 |
ENST00000407936 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.002021461 | 0.9979785 |
ENST00000407936 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.007166024 | 0.992834 |
ENST00000407936 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006356604 | 0.9936434 |
ENST00000405557 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.004034422 | 0.9959656 |
ENST00000405557 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006052116 | 0.99394786 |
ENST00000405557 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.018329749 | 0.98167026 |
ENST00000405557 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.002157606 | 0.99784243 |
ENST00000405557 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.007003682 | 0.9929963 |
ENST00000405557 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006217788 | 0.9937822 |
ENST00000442738 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.005625011 | 0.994375 |
ENST00000442738 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.005913097 | 0.99408686 |
ENST00000442738 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.017730858 | 0.98226917 |
ENST00000442738 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.0024345 | 0.9975655 |
ENST00000442738 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006853926 | 0.99314606 |
ENST00000442738 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006072046 | 0.99392796 |
ENST00000606538 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.5781204 | 0.42187962 |
ENST00000606538 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.008453805 | 0.9915462 |
ENST00000606538 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.017044934 | 0.98295504 |
ENST00000606538 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.021902516 | 0.9780975 |
ENST00000606538 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.007711222 | 0.99228877 |
ENST00000606538 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006337591 | 0.99366236 |
ENST00000470701 | ENST00000414350 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.005720464 | 0.9942795 |
ENST00000470701 | ENST00000343632 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.007317913 | 0.99268204 |
ENST00000470701 | ENST00000381756 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.013683331 | 0.9863166 |
ENST00000470701 | ENST00000405147 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.003142555 | 0.9968574 |
ENST00000470701 | ENST00000325180 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.006791537 | 0.99320847 |
ENST00000470701 | ENST00000337437 | POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012929 | + | 0.005884669 | 0.99411535 |
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Fusion Genomic Features for POLR2F-GGA1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012928 | + | 1.47E-10 | 1 |
POLR2F | chr22 | 38363177 | + | GGA1 | chr22 | 38012928 | + | 1.47E-10 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for POLR2F-GGA1 |
Go to FGviewer for the breakpoints of chr22:38363177-chr22:38012929 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | GGA1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Plays a role in protein sorting and trafficking between the trans-Golgi network (TGN) and endosomes. Mediates the ARF-dependent recruitment of clathrin to the TGN and binds ubiquitinated proteins and membrane cargo molecules with a cytosolic acidic cluster-dileucine (DXXLL) motif (PubMed:11301005, PubMed:15886016). Mediates export of the GPCR receptor ADRA2B to the cell surface (PubMed:27901063). Required for targeting PKD1:PKD2 complex from the trans-Golgi network to the cilium membrane (By similarity). Regulates retrograde transport of proteins such as phosphorylated form of BACE1 from endosomes to the trans-Golgi network (PubMed:15886016, PubMed:15615712). {ECO:0000250|UniProtKB:Q8R0H9, ECO:0000269|PubMed:11301005, ECO:0000269|PubMed:15615712, ECO:0000269|PubMed:15886016, ECO:0000269|PubMed:27901063}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000325180 | 1 | 15 | 171_299 | 42.666666666666664 | 553.0 | Domain | GAT | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000325180 | 1 | 15 | 510_631 | 42.666666666666664 | 553.0 | Domain | GAE | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000337437 | 1 | 16 | 171_299 | 42.666666666666664 | 607.0 | Domain | GAT | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000337437 | 1 | 16 | 510_631 | 42.666666666666664 | 607.0 | Domain | GAE | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000343632 | 1 | 17 | 171_299 | 42.666666666666664 | 640.0 | Domain | GAT | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000343632 | 1 | 17 | 510_631 | 42.666666666666664 | 640.0 | Domain | GAE | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000406772 | 2 | 18 | 171_299 | 0 | 567.0 | Domain | GAT | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000406772 | 2 | 18 | 17_147 | 0 | 567.0 | Domain | VHS | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000406772 | 2 | 18 | 510_631 | 0 | 567.0 | Domain | GAE | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000414350 | 1 | 3 | 171_299 | 42.666666666666664 | 90.0 | Domain | GAT | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000414350 | 1 | 3 | 510_631 | 42.666666666666664 | 90.0 | Domain | GAE | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000325180 | 1 | 15 | 358_362 | 42.666666666666664 | 553.0 | Motif | Note=Autoinhibitory | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000337437 | 1 | 16 | 358_362 | 42.666666666666664 | 607.0 | Motif | Note=Autoinhibitory | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000343632 | 1 | 17 | 358_362 | 42.666666666666664 | 640.0 | Motif | Note=Autoinhibitory | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000406772 | 2 | 18 | 358_362 | 0 | 567.0 | Motif | Note=Autoinhibitory | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000414350 | 1 | 3 | 358_362 | 42.666666666666664 | 90.0 | Motif | Note=Autoinhibitory | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000325180 | 1 | 15 | 300_509 | 42.666666666666664 | 553.0 | Region | Note=Unstructured hinge | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000337437 | 1 | 16 | 300_509 | 42.666666666666664 | 607.0 | Region | Note=Unstructured hinge | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000343632 | 1 | 17 | 300_509 | 42.666666666666664 | 640.0 | Region | Note=Unstructured hinge | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000406772 | 2 | 18 | 300_509 | 0 | 567.0 | Region | Note=Unstructured hinge | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000414350 | 1 | 3 | 300_509 | 42.666666666666664 | 90.0 | Region | Note=Unstructured hinge |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000325180 | 1 | 15 | 17_147 | 42.666666666666664 | 553.0 | Domain | VHS | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000337437 | 1 | 16 | 17_147 | 42.666666666666664 | 607.0 | Domain | VHS | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000343632 | 1 | 17 | 17_147 | 42.666666666666664 | 640.0 | Domain | VHS | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000414350 | 1 | 3 | 17_147 | 42.666666666666664 | 90.0 | Domain | VHS |
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Fusion Gene Sequence for POLR2F-GGA1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000407936_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=1583nt_BP=384nt ATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGT CATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGA GGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTA CGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCT GCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCA GGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACACCAAGGGAGGCCAAGACTGAGGTTCTTGGGGTCC ATAAGGCTCTTCAGAGCCCAAGAGAGTTGTGCTAAGATGGCCCAGGATGGAGGTCCGGGCCTGCCCCAAGGGTCCCACCACAGCCAGCGG GCTGGCCTCCCACCCCAGCATCCATACACGTAGGCCTGTTGCTGAGGGAAGGCCCTCTAGGGTCATCTGGTCCAGGGGTTCTTTGCTTCA GCTGCACATCGGCTGCCTCTCCAGGAAGCGTGTTCAACACATGGAATCAGGGCTCCACCCAGACCTGCCGAGGCCACACTCCTGGAGTAT CTGCATCCAGAGATCTGCACGTTTGTAAAGCTAAGGGGTGGTGCTTGGGCTCAGGCCTGAGGTTTTGCATCTGTTCAATAGCAGAGGAGA GAGGGGTGTACTGTCTGTGGCCCCCAGCATGGGCCACATACCAACCCACCATGGAGCAAAGCTGATTTTAAGTGGTGGTAGAGATACAGT TTCTCTTTTAATACTTACGTGTTTAGTTGGGTGCAGTGGCTTATACCTGTAATTTCAGCACTTGGGGAGGCCAAGGCAGGAGGCTTGCTT GAGGCAAGGAGTTCAAGGCTACAGTGAGCTATGATTGTGCCACTGTACTCCAGACTGGACAACAGAGTGAGACCCCATCTCTAAATAATA ATCATTATTGTTACATATTTGTTTTAACATTTTTTTCTCAAGTATAACTAGTCCTATGATTTCATAGATGTAGCTTAGGATAAGGCCAAG GTAGGTGTTGCCTATATAAGGTTTTTTTAAAAAAGGAAAAATAGGCCGGGCTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGCAGGCT GAGGCGGGCAGATCACCTGAGATCAGGAGTTCAAGATCAGCCTGACCAACATGGAGAAGCCCCATGTCTACTAAAAATAAAAAATTAGCG AGGCGTGGTGGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCATTTGAACCCAGGAGGCAGAGGTTACAGTGA >In-frame_ENST00000407936_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=144AA_start in transcript=91_stop in transcript=525 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL -------------------------------------------------------------- >In-frame_ENST00000407936_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3029nt_BP=384nt ATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGT CATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGA GGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTA CGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCT GCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCA GGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCAT CAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGG CCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACAC TACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTC CCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGT GAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAG CGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGA GGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGG TGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCC AGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGG CCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGC CCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCT CCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACT CCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAG GCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGT GACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGT TTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACC CTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAA GGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAAC CTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCA AGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCC TGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGA GGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAA CCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGAC CAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTG CTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTT GCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTC TCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGG >In-frame_ENST00000407936_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=694AA_start in transcript=91_stop in transcript=2175 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG LPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRV NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG DATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPA PALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPR PPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPP -------------------------------------------------------------- >In-frame_ENST00000407936_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2227nt_BP=384nt ATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGT CATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGA GGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTA CGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCT GCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCA GGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACACCAAGGTGCTGGAAACATGCATGAAGAGCTGCGG CAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATC GGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGAT GCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGAT CTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAA AGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCT CACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCG GATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCAC CCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGC CCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGA GCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGA TGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACC CCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGA ATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCC CAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGC CAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCA TTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACAT CGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCA CCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGA >In-frame_ENST00000407936_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=712AA_start in transcript=91_stop in transcript=2226 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPPPCDDTKVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS EKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIK EMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLT QVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLD GTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSP SSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNI -------------------------------------------------------------- >In-frame_ENST00000407936_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=804nt_BP=384nt ATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGT CATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGA GGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTA CGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCT GCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCA GGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCAT CAAGGTCGTGTCTCCCAAGGGGACTCTGCTGTGAGAGCCACTTTCCCCAGCCCAGTTTGCTGCTAGGAGACGGAGAGTAGGCCCAGGGCC TCCCAGTTCCACCCTCACCCCTCCCTGGGCAGCCTGGAGACCTCTGGCTCCTCTTTCCTGGGATGTCAAGGCTAAGTCCCCAGAGCCGAC >In-frame_ENST00000407936_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=243AA_start in transcript=728_stop in transcript=0 MLIVGSGDLALTSQERGARGLQAAQGGVRVELGGPGPTLRLLAANWAGESGSHSRVPLGDTTLMSSLRKRNLPTSSWNRLPQLFMHVSST VKAWIASHSCGDWILWASSRVASGGLSSFMAMSRGSVSPSSSTITGAHIAIWSARVPSTRARSYLVMYGVVIRFWLACGRSPEGRISTFS -------------------------------------------------------------- >In-frame_ENST00000407936_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2768nt_BP=384nt ATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGT CATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGA GGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTA CGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCT GCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCA GGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCAT CAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGG CCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACAC TACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTC CCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGT GAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAG CGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGA GGCCTTAGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGA GCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGA CCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCG GCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGA GCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACAT CCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGT GGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCT GCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCA GAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCC ACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGAGGCAT TGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTGACTCT TCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGG ACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCC CAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATGCTGGA GCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGTGTGGT TTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCTGGGGG TTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCAC CTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCCGTGGT >In-frame_ENST00000407936_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=607AA_start in transcript=91_stop in transcript=1914 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG LPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRV NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALGLSDPTPPSGPSLDGTGWNSFQSSDATE PPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPE PPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKL -------------------------------------------------------------- >In-frame_ENST00000407936_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2929nt_BP=384nt ATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGT CATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGA GGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTA CGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCT GCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCA GGCCTTGACGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGA GGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCC CCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGA AGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCAT CGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCT CATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGC GGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCAC AGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCC CACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGA CCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCT GGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAA GACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCT GCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCA GCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTA TGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCT GAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCAC GGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCT CCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAG CCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCC TTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGC CCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGC TGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTG GGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGG CCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTC CGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGG CCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGT CTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGT >In-frame_ENST00000407936_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=661AA_start in transcript=91_stop in transcript=2076 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFP LPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMP TRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGK TLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVY DQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRL -------------------------------------------------------------- >In-frame_ENST00000405557_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=1569nt_BP=370nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGA AGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGA GAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACACCAAGGGAGGCCAAGACTGAGGTTCTTGGGGTCCATAAGGCTCTTCAG AGCCCAAGAGAGTTGTGCTAAGATGGCCCAGGATGGAGGTCCGGGCCTGCCCCAAGGGTCCCACCACAGCCAGCGGGCTGGCCTCCCACC CCAGCATCCATACACGTAGGCCTGTTGCTGAGGGAAGGCCCTCTAGGGTCATCTGGTCCAGGGGTTCTTTGCTTCAGCTGCACATCGGCT GCCTCTCCAGGAAGCGTGTTCAACACATGGAATCAGGGCTCCACCCAGACCTGCCGAGGCCACACTCCTGGAGTATCTGCATCCAGAGAT CTGCACGTTTGTAAAGCTAAGGGGTGGTGCTTGGGCTCAGGCCTGAGGTTTTGCATCTGTTCAATAGCAGAGGAGAGAGGGGTGTACTGT CTGTGGCCCCCAGCATGGGCCACATACCAACCCACCATGGAGCAAAGCTGATTTTAAGTGGTGGTAGAGATACAGTTTCTCTTTTAATAC TTACGTGTTTAGTTGGGTGCAGTGGCTTATACCTGTAATTTCAGCACTTGGGGAGGCCAAGGCAGGAGGCTTGCTTGAGGCAAGGAGTTC AAGGCTACAGTGAGCTATGATTGTGCCACTGTACTCCAGACTGGACAACAGAGTGAGACCCCATCTCTAAATAATAATCATTATTGTTAC ATATTTGTTTTAACATTTTTTTCTCAAGTATAACTAGTCCTATGATTTCATAGATGTAGCTTAGGATAAGGCCAAGGTAGGTGTTGCCTA TATAAGGTTTTTTTAAAAAAGGAAAAATAGGCCGGGCTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGCAGGCTGAGGCGGGCAGATC ACCTGAGATCAGGAGTTCAAGATCAGCCTGACCAACATGGAGAAGCCCCATGTCTACTAAAAATAAAAAATTAGCGAGGCGTGGTGGGCG GGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCATTTGAACCCAGGAGGCAGAGGTTACAGTGAGCCGAGATCGTGCT >In-frame_ENST00000405557_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=144AA_start in transcript=77_stop in transcript=511 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL -------------------------------------------------------------- >In-frame_ENST00000405557_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3015nt_BP=370nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGA AGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGC TGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTC CCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGG TGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTC CTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACC TCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGG AGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGA AGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGA TCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCG GCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCC GCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCA CACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCC AGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCC TCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGA ATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGC CCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACC AGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCA CCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGC TGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCT ACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCT AGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGT TGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGC CCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGT AGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTG GGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCC TCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGAT TGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCC TGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCT TCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAG >In-frame_ENST00000405557_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=694AA_start in transcript=77_stop in transcript=2161 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG LPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRV NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG DATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPA PALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPR PPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPP -------------------------------------------------------------- >In-frame_ENST00000405557_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2213nt_BP=370nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGA AGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGA GAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACACCAAGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACG ACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGA ACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGG GGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGG AGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGG AGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGA TGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGC TCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACC TGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCT CAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCT CAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGA ACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACAT CCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGC GGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCA CCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGC CCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACC CACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAG CTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCA CCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACG >In-frame_ENST00000405557_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=712AA_start in transcript=77_stop in transcript=2212 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPPPCDDTKVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS EKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIK EMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLT QVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLD GTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSP SSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNI -------------------------------------------------------------- >In-frame_ENST00000405557_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=790nt_BP=370nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGA AGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGC TGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTC CCAAGGGGACTCTGCTGTGAGAGCCACTTTCCCCAGCCCAGTTTGCTGCTAGGAGACGGAGAGTAGGCCCAGGGCCTCCCAGTTCCACCC TCACCCCTCCCTGGGCAGCCTGGAGACCTCTGGCTCCTCTTTCCTGGGATGTCAAGGCTAAGTCCCCAGAGCCGACTATGAGCAGGCCTG >In-frame_ENST00000405557_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=238AA_start in transcript=714_stop in transcript=1 MLIVGSGDLALTSQERGARGLQAAQGGVRVELGGPGPTLRLLAANWAGESGSHSRVPLGDTTLMSSLRKRNLPTSSWNRLPQLFMHVSST VKAWIASHSCGDWILWASSRVASGGLSSFMAMSRGSVSPSSSTITGAHIAIWSARVPSTRARSYLVMYGVVIRFWLACGRSPEGRISTFS -------------------------------------------------------------- >In-frame_ENST00000405557_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2754nt_BP=370nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGA AGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGC TGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTC CCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGG TGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTC CTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACC TCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGG AGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGA AGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGGCCTCA GTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTG CTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGG GGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGG ACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTC CGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTG TGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCA TGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGG GCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTC GCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGG GTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGAC ACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTC CGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAG GGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCA GCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCT TAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTT CTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCAT TGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGT GTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCA >In-frame_ENST00000405557_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=607AA_start in transcript=77_stop in transcript=1900 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG LPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRV NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALGLSDPTPPSGPSLDGTGWNSFQSSDATE PPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPE PPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKL -------------------------------------------------------------- >In-frame_ENST00000405557_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2915nt_BP=370nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGA AGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGTATC TGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCG CAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCAC GGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAG CCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACA ACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGT ACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGG CCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCC CTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCG AGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTT CAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCA GTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGC AGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCA GCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAA CCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCT TCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCC AGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTT TTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCA CCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAG GGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGG CCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGA GCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGA AGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCC CCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGA ACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGT GGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACT GTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATT GGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAGTGAGAGCAG >In-frame_ENST00000405557_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=661AA_start in transcript=77_stop in transcript=2062 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFP LPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMP TRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGK TLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVY DQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRL -------------------------------------------------------------- >In-frame_ENST00000442738_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=1617nt_BP=418nt AGTGATTTCCTCTGGGTTACGGCGCAGGCGCAAGATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGA CCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGG ATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACC AGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTG TGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACA CCAAGGGAGGCCAAGACTGAGGTTCTTGGGGTCCATAAGGCTCTTCAGAGCCCAAGAGAGTTGTGCTAAGATGGCCCAGGATGGAGGTCC GGGCCTGCCCCAAGGGTCCCACCACAGCCAGCGGGCTGGCCTCCCACCCCAGCATCCATACACGTAGGCCTGTTGCTGAGGGAAGGCCCT CTAGGGTCATCTGGTCCAGGGGTTCTTTGCTTCAGCTGCACATCGGCTGCCTCTCCAGGAAGCGTGTTCAACACATGGAATCAGGGCTCC ACCCAGACCTGCCGAGGCCACACTCCTGGAGTATCTGCATCCAGAGATCTGCACGTTTGTAAAGCTAAGGGGTGGTGCTTGGGCTCAGGC CTGAGGTTTTGCATCTGTTCAATAGCAGAGGAGAGAGGGGTGTACTGTCTGTGGCCCCCAGCATGGGCCACATACCAACCCACCATGGAG CAAAGCTGATTTTAAGTGGTGGTAGAGATACAGTTTCTCTTTTAATACTTACGTGTTTAGTTGGGTGCAGTGGCTTATACCTGTAATTTC AGCACTTGGGGAGGCCAAGGCAGGAGGCTTGCTTGAGGCAAGGAGTTCAAGGCTACAGTGAGCTATGATTGTGCCACTGTACTCCAGACT GGACAACAGAGTGAGACCCCATCTCTAAATAATAATCATTATTGTTACATATTTGTTTTAACATTTTTTTCTCAAGTATAACTAGTCCTA TGATTTCATAGATGTAGCTTAGGATAAGGCCAAGGTAGGTGTTGCCTATATAAGGTTTTTTTAAAAAAGGAAAAATAGGCCGGGCTGGTG GCTCACGCCTGTAATCCCAGCACTTTGGCAGGCTGAGGCGGGCAGATCACCTGAGATCAGGAGTTCAAGATCAGCCTGACCAACATGGAG AAGCCCCATGTCTACTAAAAATAAAAAATTAGCGAGGCGTGGTGGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGA >In-frame_ENST00000442738_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=144AA_start in transcript=125_stop in transcript=559 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL -------------------------------------------------------------- >In-frame_ENST00000442738_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3063nt_BP=418nt AGTGATTTCCTCTGGGTTACGGCGCAGGCGCAAGATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGA CCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGG ATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACC AGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTG TGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACG AAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACA AGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGA TTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGA AATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGG ACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGA GCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCT TCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGT ATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAG GCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG TTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACA GCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCC TGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGT GGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCA GCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCC TGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCAC TGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTG TCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCC AGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGA TGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGT CACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCAC ACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTG TGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGT TGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCA GCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCC AGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAAC CTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATG GCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTAC GTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAGTGAGAGCAGGAGTATTTATGAAAATAAAACGTCGTTTTTCCT >In-frame_ENST00000442738_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=694AA_start in transcript=125_stop in transcript=2209 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG LPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRV NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG DATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPA PALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPR PPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPP -------------------------------------------------------------- >In-frame_ENST00000442738_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2261nt_BP=418nt AGTGATTTCCTCTGGGTTACGGCGCAGGCGCAAGATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGA CCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGG ATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACC AGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTG TGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACA CCAAGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGG TCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGC CCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCT TTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATC CCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATG CCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGG ACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCT TAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATG CCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTA TGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCA GTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTG CTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGG GGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGG ACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTC CGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTG TGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCA TGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGG GCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTC GCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGG >In-frame_ENST00000442738_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=712AA_start in transcript=125_stop in transcript=2260 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPPPCDDTKVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS EKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIK EMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLT QVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLD GTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSP SSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNI -------------------------------------------------------------- >In-frame_ENST00000442738_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=838nt_BP=418nt AGTGATTTCCTCTGGGTTACGGCGCAGGCGCAAGATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGA CCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGG ATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACC AGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTG TGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACG AAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGGGGACTCTGCTGTGAGAGCCACTTTCCCCAGCCCAGT TTGCTGCTAGGAGACGGAGAGTAGGCCCAGGGCCTCCCAGTTCCACCCTCACCCCTCCCTGGGCAGCCTGGAGACCTCTGGCTCCTCTTT CCTGGGATGTCAAGGCTAAGTCCCCAGAGCCGACTATGAGCAGGCCTGTCCCTCATGTCAGTTCTGCATCCTCACCATGGTGCCATCTAG >In-frame_ENST00000442738_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=248AA_start in transcript=762_stop in transcript=16 MLIVGSGDLALTSQERGARGLQAAQGGVRVELGGPGPTLRLLAANWAGESGSHSRVPLGDTTLMSSLRKRNLPTSSWNRLPQLFMHVSST VKAWIASHSCGDWILWASSRVASGGLSSFMAMSRGSVSPSSSTITGAHIAIWSARVPSTRARSYLVMYGVVIRFWLACGRSPEGRISTFS -------------------------------------------------------------- >In-frame_ENST00000442738_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2802nt_BP=418nt AGTGATTTCCTCTGGGTTACGGCGCAGGCGCAAGATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGA CCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGG ATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACC AGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTG TGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACG AAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACA AGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGA TTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGA AATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGG ACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGA GCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCT TCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCG GATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGC AGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGC AAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCA GCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCA CTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCC GGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCC AGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAG CAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCT ACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGA GGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCT TCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGC CTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAG CACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGG GAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCC TACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGC TGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAG AGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGG GTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAGTGAGAGCAGGAGTATTTATGAAAATAAAACGTC >In-frame_ENST00000442738_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=607AA_start in transcript=125_stop in transcript=1948 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG LPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRV NAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALGLSDPTPPSGPSLDGTGWNSFQSSDATE PPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPE PPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKL -------------------------------------------------------------- >In-frame_ENST00000442738_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2963nt_BP=418nt AGTGATTTCCTCTGGGTTACGGCGCAGGCGCAAGATAAGCTAGGAGCCGCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGA CCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGG ATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACC AGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTG TGATGGTGGAGCTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGG AGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGT CCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGA TGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGC GGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCC AGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGG CGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGC TGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATC TCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGC TTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGT CGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAA GCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGC AGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCC ACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCA TCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGC GCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGG TTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGC TGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATG TGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCA GCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTA GGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGG GGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGG GCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACT CGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTG CACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGG CCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCG AGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCA >In-frame_ENST00000442738_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=661AA_start in transcript=125_stop in transcript=2110 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPL LIAMKELKPPLATRLLAHKIQSPQEWEAIQALTYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFP LPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDL MKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMP TRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGK TLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVY DQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRL -------------------------------------------------------------- >In-frame_ENST00000606538_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=1887nt_BP=688nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGTAAGTCACTCAAATCATGGTTCACTTCTCCAAATCTCTGGGAGGCATCTGTTGGGCTCTCT GTTGCACCCTTTGCTCCCACTTGCCTGGCTGGAGAAGTTGATGCTTATTCCTACAGATCCTTAGGAACAGCTCACCAGGAAGTAGGAGGA AGAGAGAAGAGGAGGCAGGGAAAGTGGGAGGGCACTGATGAGACATGGACGTCTTCTGGCTGTTGGAATTTCCCTGTTCCTGCTGCAGGA GGCCTTACCAATATTCTGTCATTCTTCCCCCTCTTGTCTGATATAAAAACTTTCTTTTTCTTGTAATTGCTTTCTTACAAAGTACACTCA TCAGCCCCAAGAGGCTGCTCCTAAGACTTCTCTTTGCTTGTGTTTTGCACACAATCTGGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACA CCAAGGGAGGCCAAGACTGAGGTTCTTGGGGTCCATAAGGCTCTTCAGAGCCCAAGAGAGTTGTGCTAAGATGGCCCAGGATGGAGGTCC GGGCCTGCCCCAAGGGTCCCACCACAGCCAGCGGGCTGGCCTCCCACCCCAGCATCCATACACGTAGGCCTGTTGCTGAGGGAAGGCCCT CTAGGGTCATCTGGTCCAGGGGTTCTTTGCTTCAGCTGCACATCGGCTGCCTCTCCAGGAAGCGTGTTCAACACATGGAATCAGGGCTCC ACCCAGACCTGCCGAGGCCACACTCCTGGAGTATCTGCATCCAGAGATCTGCACGTTTGTAAAGCTAAGGGGTGGTGCTTGGGCTCAGGC CTGAGGTTTTGCATCTGTTCAATAGCAGAGGAGAGAGGGGTGTACTGTCTGTGGCCCCCAGCATGGGCCACATACCAACCCACCATGGAG CAAAGCTGATTTTAAGTGGTGGTAGAGATACAGTTTCTCTTTTAATACTTACGTGTTTAGTTGGGTGCAGTGGCTTATACCTGTAATTTC AGCACTTGGGGAGGCCAAGGCAGGAGGCTTGCTTGAGGCAAGGAGTTCAAGGCTACAGTGAGCTATGATTGTGCCACTGTACTCCAGACT GGACAACAGAGTGAGACCCCATCTCTAAATAATAATCATTATTGTTACATATTTGTTTTAACATTTTTTTCTCAAGTATAACTAGTCCTA TGATTTCATAGATGTAGCTTAGGATAAGGCCAAGGTAGGTGTTGCCTATATAAGGTTTTTTTAAAAAAGGAAAAATAGGCCGGGCTGGTG GCTCACGCCTGTAATCCCAGCACTTTGGCAGGCTGAGGCGGGCAGATCACCTGAGATCAGGAGTTCAAGATCAGCCTGACCAACATGGAG AAGCCCCATGTCTACTAAAAATAAAAAATTAGCGAGGCGTGGTGGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGA >In-frame_ENST00000606538_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=154AA_start in transcript=1008_stop in transcript=544 MDQMTLEGLPSATGLRVWMLGWEASPLAVVGPLGQARTSILGHLSTTLLGSEEPYGPQEPQSWPPLVSSHGGGRMVASPLLTVKAWIASH -------------------------------------------------------------- >In-frame_ENST00000606538_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3333nt_BP=688nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGTAAGTCACTCAAATCATGGTTCACTTCTCCAAATCTCTGGGAGGCATCTGTTGGGCTCTCT GTTGCACCCTTTGCTCCCACTTGCCTGGCTGGAGAAGTTGATGCTTATTCCTACAGATCCTTAGGAACAGCTCACCAGGAAGTAGGAGGA AGAGAGAAGAGGAGGCAGGGAAAGTGGGAGGGCACTGATGAGACATGGACGTCTTCTGGCTGTTGGAATTTCCCTGTTCCTGCTGCAGGA GGCCTTACCAATATTCTGTCATTCTTCCCCCTCTTGTCTGATATAAAAACTTTCTTTTTCTTGTAATTGCTTTCTTACAAAGTACACTCA TCAGCCCCAAGAGGCTGCTCCTAAGACTTCTCTTTGCTTGTGTTTTGCACACAATCTGGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACG AAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACA AGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGA TTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGA AATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGG ACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGA GCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCT TCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGT ATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAG GCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG TTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACA GCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCC TGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGT GGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCA GCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCC TGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCAC TGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTG TCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCC AGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGA TGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGT CACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCAC ACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTG TGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGT TGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCA GCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCC AGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAAC CTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATG GCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTAC GTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAGTGAGAGCAGGAGTATTTATGAAAATAAAACGTCGTTTTTCCT >In-frame_ENST00000606538_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=611AA_start in transcript=644_stop in transcript=2479 MLLRLLFACVLHTIWPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILEL LYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRM EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLV RGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSS DATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHT VSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVM -------------------------------------------------------------- >In-frame_ENST00000606538_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2531nt_BP=688nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGTAAGTCACTCAAATCATGGTTCACTTCTCCAAATCTCTGGGAGGCATCTGTTGGGCTCTCT GTTGCACCCTTTGCTCCCACTTGCCTGGCTGGAGAAGTTGATGCTTATTCCTACAGATCCTTAGGAACAGCTCACCAGGAAGTAGGAGGA AGAGAGAAGAGGAGGCAGGGAAAGTGGGAGGGCACTGATGAGACATGGACGTCTTCTGGCTGTTGGAATTTCCCTGTTCCTGCTGCAGGA GGCCTTACCAATATTCTGTCATTCTTCCCCCTCTTGTCTGATATAAAAACTTTCTTTTTCTTGTAATTGCTTTCTTACAAAGTACACTCA TCAGCCCCAAGAGGCTGCTCCTAAGACTTCTCTTTGCTTGTGTTTTGCACACAATCTGGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACA CCAAGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGG TCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGC CCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCT TTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATC CCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATG CCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGG ACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCT TAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATG CCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTA TGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCA GTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTG CTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGG GGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGG ACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTC CGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTG TGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCA TGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGG GCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTC GCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGG >In-frame_ENST00000606538_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=629AA_start in transcript=644_stop in transcript=2530 MLLRLLFACVLHTIWPPLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPPPCDDTKVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPK YLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLR AANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEIL QANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTP PSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNK SSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTA -------------------------------------------------------------- >In-frame_ENST00000606538_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=1108nt_BP=688nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGTAAGTCACTCAAATCATGGTTCACTTCTCCAAATCTCTGGGAGGCATCTGTTGGGCTCTCT GTTGCACCCTTTGCTCCCACTTGCCTGGCTGGAGAAGTTGATGCTTATTCCTACAGATCCTTAGGAACAGCTCACCAGGAAGTAGGAGGA AGAGAGAAGAGGAGGCAGGGAAAGTGGGAGGGCACTGATGAGACATGGACGTCTTCTGGCTGTTGGAATTTCCCTGTTCCTGCTGCAGGA GGCCTTACCAATATTCTGTCATTCTTCCCCCTCTTGTCTGATATAAAAACTTTCTTTTTCTTGTAATTGCTTTCTTACAAAGTACACTCA TCAGCCCCAAGAGGCTGCTCCTAAGACTTCTCTTTGCTTGTGTTTTGCACACAATCTGGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACG AAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGGGGACTCTGCTGTGAGAGCCACTTTCCCCAGCCCAGT TTGCTGCTAGGAGACGGAGAGTAGGCCCAGGGCCTCCCAGTTCCACCCTCACCCCTCCCTGGGCAGCCTGGAGACCTCTGGCTCCTCTTT CCTGGGATGTCAAGGCTAAGTCCCCAGAGCCGACTATGAGCAGGCCTGTCCCTCATGTCAGTTCTGCATCCTCACCATGGTGCCATCTAG >In-frame_ENST00000606538_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=162AA_start in transcript=1032_stop in transcript=544 MLIVGSGDLALTSQERGARGLQAAQGGVRVELGGPGPTLRLLAANWAGESGSHSRVPLGDTTLMSSLRKRNLPTSSWNRLPQLFMHVSST -------------------------------------------------------------- >In-frame_ENST00000606538_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3072nt_BP=688nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGTAAGTCACTCAAATCATGGTTCACTTCTCCAAATCTCTGGGAGGCATCTGTTGGGCTCTCT GTTGCACCCTTTGCTCCCACTTGCCTGGCTGGAGAAGTTGATGCTTATTCCTACAGATCCTTAGGAACAGCTCACCAGGAAGTAGGAGGA AGAGAGAAGAGGAGGCAGGGAAAGTGGGAGGGCACTGATGAGACATGGACGTCTTCTGGCTGTTGGAATTTCCCTGTTCCTGCTGCAGGA GGCCTTACCAATATTCTGTCATTCTTCCCCCTCTTGTCTGATATAAAAACTTTCTTTTTCTTGTAATTGCTTTCTTACAAAGTACACTCA TCAGCCCCAAGAGGCTGCTCCTAAGACTTCTCTTTGCTTGTGTTTTGCACACAATCTGGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACG AAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACA AGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGA TTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGA AATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGG ACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGA GCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCT TCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCG GATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGC AGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGC AAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCA GCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCA CTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCC GGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCC AGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAG CAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCT ACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGA GGGACCGGTCACTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCT TCTCCCCACACCCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGC CTGGGTTTGTGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAG CACAGCTGTTGGGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGG GAAGGCCCAGCCATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCC TACACCCCCAGCTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGC TGGGGGAACCTCACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAG AGGCCCATGGCCCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGG GTGTCTTACGTCTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAGTGAGAGCAGGAGTATTTATGAAAATAAAACGTC >In-frame_ENST00000606538_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=524AA_start in transcript=644_stop in transcript=2218 MLLRLLFACVLHTIWPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILEL LYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRM EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALGLSDPTPPSGPSLDGTGWNSF QSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSL LHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVP -------------------------------------------------------------- >In-frame_ENST00000606538_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3233nt_BP=688nt GCGCGAGTCGTAGTGTCGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACG AGGACAATTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGA ATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCG TGCTGGGCACCCGAGCGCTCCAGATTGCGTAAGTCACTCAAATCATGGTTCACTTCTCCAAATCTCTGGGAGGCATCTGTTGGGCTCTCT GTTGCACCCTTTGCTCCCACTTGCCTGGCTGGAGAAGTTGATGCTTATTCCTACAGATCCTTAGGAACAGCTCACCAGGAAGTAGGAGGA AGAGAGAAGAGGAGGCAGGGAAAGTGGGAGGGCACTGATGAGACATGGACGTCTTCTGGCTGTTGGAATTTCCCTGTTCCTGCTGCAGGA GGCCTTACCAATATTCTGTCATTCTTCCCCCTCTTGTCTGATATAAAAACTTTCTTTTTCTTGTAATTGCTTTCTTACAAAGTACACTCA TCAGCCCCAAGAGGCTGCTCCTAAGACTTCTCTTTGCTTGTGTTTTGCACACAATCTGGCCTCCACTCGCCACCCGGCTGCTGGCCCACA AGATCCAGTCCCCACAGGAGTGGGAGGCGATCCAGGCCTTGACGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGG AGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGT CCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGA TGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGC GGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCC AGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGG CGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGC TGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATC TCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGC TTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGT CGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAA GCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGC AGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCC ACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCA TCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGC GCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGG TTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGC TGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATG TGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCA GCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTA GGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGG GGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGG GCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACT CGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTG CACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGG CCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCG AGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCA >In-frame_ENST00000606538_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=578AA_start in transcript=644_stop in transcript=2380 MLLRLLFACVLHTIWPPLATRLLAHKIQSPQEWEAIQALTYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKL PDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAA AGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAG TTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLD DLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSN ILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANP -------------------------------------------------------------- >In-frame_ENST00000470701_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=1606nt_BP=407nt CGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAAGTGAGTGCG GGAGCGGAGTGGCCTTTGCGGCAACCTTGGAAGGGGCGGATGAGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTA GATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATC ACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAG CTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCC CCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACACCAAGGGAGGC CAAGACTGAGGTTCTTGGGGTCCATAAGGCTCTTCAGAGCCCAAGAGAGTTGTGCTAAGATGGCCCAGGATGGAGGTCCGGGCCTGCCCC AAGGGTCCCACCACAGCCAGCGGGCTGGCCTCCCACCCCAGCATCCATACACGTAGGCCTGTTGCTGAGGGAAGGCCCTCTAGGGTCATC TGGTCCAGGGGTTCTTTGCTTCAGCTGCACATCGGCTGCCTCTCCAGGAAGCGTGTTCAACACATGGAATCAGGGCTCCACCCAGACCTG CCGAGGCCACACTCCTGGAGTATCTGCATCCAGAGATCTGCACGTTTGTAAAGCTAAGGGGTGGTGCTTGGGCTCAGGCCTGAGGTTTTG CATCTGTTCAATAGCAGAGGAGAGAGGGGTGTACTGTCTGTGGCCCCCAGCATGGGCCACATACCAACCCACCATGGAGCAAAGCTGATT TTAAGTGGTGGTAGAGATACAGTTTCTCTTTTAATACTTACGTGTTTAGTTGGGTGCAGTGGCTTATACCTGTAATTTCAGCACTTGGGG AGGCCAAGGCAGGAGGCTTGCTTGAGGCAAGGAGTTCAAGGCTACAGTGAGCTATGATTGTGCCACTGTACTCCAGACTGGACAACAGAG TGAGACCCCATCTCTAAATAATAATCATTATTGTTACATATTTGTTTTAACATTTTTTTCTCAAGTATAACTAGTCCTATGATTTCATAG ATGTAGCTTAGGATAAGGCCAAGGTAGGTGTTGCCTATATAAGGTTTTTTTAAAAAAGGAAAAATAGGCCGGGCTGGTGGCTCACGCCTG TAATCCCAGCACTTTGGCAGGCTGAGGCGGGCAGATCACCTGAGATCAGGAGTTCAAGATCAGCCTGACCAACATGGAGAAGCCCCATGT CTACTAAAAATAAAAAATTAGCGAGGCGTGGTGGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCATTTGAAC >In-frame_ENST00000470701_ENST00000414350_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=180AA_start in transcript=6_stop in transcript=548 MRVSARDRGAAGSLRRGCHVRQRGQVSAGAEWPLRQPWKGRMSFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPPPCDDTKGGQD -------------------------------------------------------------- >In-frame_ENST00000470701_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=3052nt_BP=407nt CGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAAGTGAGTGCG GGAGCGGAGTGGCCTTTGCGGCAACCTTGGAAGGGGCGGATGAGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTA GATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATC ACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAG CTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCC CCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAG TTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAG CTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCC GACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATG CTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGG ATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAG GGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCG AGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTG GTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTC CCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTT GACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCG TCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGC AGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAG CAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCAC ACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATC AAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGC TCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTT ATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTG CTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTG GACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGC CTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGG CCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGG TCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGC CAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCG GGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCA CTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCC CGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAG GGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATC >In-frame_ENST00000470701_ENST00000343632_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=730AA_start in transcript=6_stop in transcript=2198 MRVSARDRGAAGSLRRGCHVRQRGQVSAGAEWPLRQPWKGRMSFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLA RLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD TEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDD ELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQP TPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSD VLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLTFTMGDQTYNEMGDVDQ -------------------------------------------------------------- >In-frame_ENST00000470701_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2250nt_BP=407nt CGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAAGTGAGTGCG GGAGCGGAGTGGCCTTTGCGGCAACCTTGGAAGGGGCGGATGAGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTA GATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATC ACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAG CTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCC CCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGAGAAGGGGAGAGGCCACCATCCGTCCCCCGCCATGTGACGACACCAAGGTGCTG GAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAGTTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCC AAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTG AAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCT CCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTC CGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAG GTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAG GAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACAGAGGACAATGATGAGGCCTTAGCGGAGATC CTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATGCCACAGCCGGC TCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCACCCGC CCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAGCTCATGTCTCTGGGCCTCAGTGACCCCACA CCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAG GCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTC CTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAAT AAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCC GTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAG CACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACC GCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTG CCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTAC AAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAG >In-frame_ENST00000470701_ENST00000381756_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=747AA_start in transcript=6_stop in transcript=2249 MRVSARDRGAAGSLRRGCHVRQRGQVSAGAEWPLRQPWKGRMSFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPPPCDDTKVLET CMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPP RPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKEL YQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPG EQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQ QSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHG FRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKL -------------------------------------------------------------- >In-frame_ENST00000470701_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=827nt_BP=407nt CGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAAGTGAGTGCG GGAGCGGAGTGGCCTTTGCGGCAACCTTGGAAGGGGCGGATGAGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTA GATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATC ACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAG CTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCC CCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAG TTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGGGGACTCTGCTGTGAGAGCCACTTTCCCCAGCCCAGTTTGCTGCTAGG AGACGGAGAGTAGGCCCAGGGCCTCCCAGTTCCACCCTCACCCCTCCCTGGGCAGCCTGGAGACCTCTGGCTCCTCTTTCCTGGGATGTC AAGGCTAAGTCCCCAGAGCCGACTATGAGCAGGCCTGTCCCTCATGTCAGTTCTGCATCCTCACCATGGTGCCATCTAGCAGGTGGGGAA >In-frame_ENST00000470701_ENST00000405147_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=230AA_start in transcript=751_stop in transcript=59 MLIVGSGDLALTSQERGARGLQAAQGGVRVELGGPGPTLRLLAANWAGESGSHSRVPLGDTTLMSSLRKRNLPTSSWNRLPQLFMHVSST VKAWIASHSCGDWILWASSRVASGGLSSFMAMSRGSVSPSSSTITGAHIAIWSARVPSTRARSYLVMYGVVIRFWLACGRSPEGRISTFS -------------------------------------------------------------- >In-frame_ENST00000470701_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2791nt_BP=407nt CGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAAGTGAGTGCG GGAGCGGAGTGGCCTTTGCGGCAACCTTGGAAGGGGCGGATGAGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTA GATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATC ACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAG CTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCC CCACAGGAGTGGGAGGCGATCCAGGCCTTGACGGTGCTGGAAACATGCATGAAGAGCTGCGGCAAGCGGTTCCACGACGAAGTGGGCAAG TTCCGCTTTCTCAACGAGCTCATCAAGGTCGTGTCTCCCAAGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAG CTCCTCTACAGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCC GACCCCAAGCTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATG CTGGCCCGCCTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGG ATGGAGAAGATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAG GGCGGCGCAGCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCG AGTGACACAGAGGACAATGATGAGGCCTTAGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGC TTCCAGTCGTCGGATGCCACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTG CCAGCAAGCAGCGGTCTGGACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGG GAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGC CTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTG GAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTG CCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTC CCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAG GTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATG GGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCA CTGTCCAGCCTGGAGGGAGGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACAC CCCTGTAGGCCTCAAGTGACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTG CCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTG GGGAAGGGCCAGGACCTCAGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGC CATAACTCGGGGGCCATGCTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAG CTATTTGCACTCTGGTGTGTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCT CACCTGGCCCGTACTCCTGGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGC CCCAGCGAGGGGCTGTGGGGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGT CTGTCCATCCATCTGTCCGTGGTCAGAAGTGGGGTCAGTGTGTGAGTGAGAGCAGGAGTATTTATGAAAATAAAACGTCGTTTTTCCTGG >In-frame_ENST00000470701_ENST00000325180_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=643AA_start in transcript=6_stop in transcript=1937 MRVSARDRGAAGSLRRGCHVRQRGQVSAGAEWPLRQPWKGRMSFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLA RLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD TEDNDEALGLSDPTPPSGPSLDGTGWNSFQSSDATEPPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEK QQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPG RSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLTFTMGDQTYNEMGD -------------------------------------------------------------- >In-frame_ENST00000470701_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(transcript)=2952nt_BP=407nt CGCTGTTTGCGGGTCTCCGCGCGGGACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGTCAGACAACGAGGACAAGTGAGTGCG GGAGCGGAGTGGCCTTTGCGGCAACCTTGGAAGGGGCGGATGAGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTA GATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATC ACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCGCTCCAGATTGCGATGTGTGCCCCTGTGATGGTGGAG CTGGAGGGGGAGACAGATCCTCTGCTCATTGCCATGAAGGAACTCAAGCCTCCACTCGCCACCCGGCTGCTGGCCCACAAGATCCAGTCC CCACAGGAGTGGGAGGCGATCCAGGCCTTGACGTATCTGGGCTCTCGGACATCGGAGAAGGTGAAGAACAAGATCTTGGAGCTCCTCTAC AGCTGGACAGTGGGCCTGCCCGAGGAGGTGAAAATCGCAGAGGCCTACCAGATGCTAAAGAAGCAGGGGATTGTAAAGTCCGACCCCAAG CTTCCAGATGACACTACCTTTCCCCTTCCTCCTCCACGGCCGAAGAATGTGATCTTTGAAGATGAGGAGAAATCCAAGATGCTGGCCCGC CTGCTGAAGAGCTCCCATCCCGAAGACCTCCGCGCAGCCAATAAGCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCGGATGGAGAAG ATCTCGAAGAGGGTGAATGCCATCGAGGAGGTGAACAACAATGTGAAACTGCTCACGGAGATGGTGATGAGCCACAGCCAGGGCGGCGCA GCAGCTGGCAGCAGCGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGGATGCGGCCCACGCTCTTCCGACTGGCGAGTGACACA GAGGACAATGATGAGGCCTTAGCGGAGATCCTGCAGGCCAATGACAACCTCACCCAGGTGATCAACCTGTATAAGCAGCTGGTGCGGGGT GAGGAGGTCAACGGTGATGCCACAGCCGGCTCCATCCCTGGGAGCACCTCGGCCCTGCTGGATCTCTCAGGCCTGGATCTCCCGCCTGCG GGCACCACCTACCCAGCTATGCCCACCCGCCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAGTTTCCCTGCTTGACGACGAG CTCATGTCTCTGGGCCTCAGTGACCCCACACCCCCTTCAGGCCCAAGCCTGGATGGTACCGGATGGAACAGCTTCCAGTCGTCGGATGCC ACTGAGCCCCCAGCCCCTGCTCTGGCCCAGGCCCCCAGTATGGAAAGCCGACCCCCAGCGCAGACATCCCTGCCAGCAAGCAGCGGTCTG GACGACCTAGACCTCCTGGGGAAGACCCTCCTGCAGCAGTCGCTGCCCCCGGAATCCCAGCAAGTGCGGTGGGAGAAGCAGCAGCCAACC CCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCC CCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGC AACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG CTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTG AAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAAC CCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTC CCCCCACCTGAAACCTGGGGTAGCCTCTAGAACAGAGGGGCTGGGGAGAGGAAGGGGCAGAGGGACCGGTCACTGTCCAGCCTGGAGGGA GGCATTGGTGGCCAAGGACACCCTTTGTTGCCCATGGCCATTCACCCCCAGGCCTGGTGCTTCTCCCCACACCCCTGTAGGCCTCAAGTG ACTCTTCCCCCTCCTGCTCCGGCCCCGCCCCTGCTGAGCCAAACCCAGTAGGAGGCTGGGCCTGGGTTTGTGCCGCTGGGGTCTCCATCA CCGGGACCTGGAGAGGGAGGGGCTGTGTAGCCTTGGAAGAACTTGGGTCATGGGGAGGAAGCACAGCTGTTGGGGAAGGGCCAGGACCTC AGGCCCAGCCCCAACCCCAGCTGGGGTGGGGTCTTCCCCACCTGTCTCTTATGCCTTATGGGAAGGCCCAGCCATAACTCGGGGGCCATG CTGGAGCTGGGGACCAGCTTAGGCCTCCTCCATAGGAACCCAGTGACTGGGGGGTGACGCCTACACCCCCAGCTATTTGCACTCTGGTGT GTGGTTTGACTCTGCTTTTCTTCCGGATTGGCCCTGTGGTCACAGCCTCAGGGGGCCAGGCTGGGGGAACCTCACCTGGCCCGTACTCCT GGGGGTTTCCCTTTGCCATTGGGCCCCCTGAGGGACTGTGGGGGCTCAAGGGTAATGCCAGAGGCCCATGGCCCCAGCGAGGGGCTGTGG GGCACCTAGAGTTCTCGGTGTGTCTCCTTCATTCATTGGCCTCTGCTGGGGCCTCCTATGGGTGTCTTACGTCTGTCCATCCATCTGTCC >In-frame_ENST00000470701_ENST00000337437_TCGA-AO-A129-01A_POLR2F_chr22_38363177_+_GGA1_chr22_38012929_length(amino acids)=697AA_start in transcript=6_stop in transcript=2099 MRVSARDRGAAGSLRRGCHVRQRGQVSAGAEWPLRQPWKGRMSFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITT PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKPPLATRLLAHKIQSPQEWEAIQALTYLGSRTSEKVKNKILELLYSW TVGLPEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKIS KRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEE VNGDATAGSIPGSTSALLDLSGLDLPPAGTTYPAMPTRPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATE PPAPALAQAPSMESRPPAQTSLPASSGLDDLDLLGKTLLQQSLPPESQQVRWEKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPE PPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for POLR2F-GGA1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000325180 | 1 | 15 | 114_274 | 42.666666666666664 | 553.0 | ARF3 | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000337437 | 1 | 16 | 114_274 | 42.666666666666664 | 607.0 | ARF3 | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000343632 | 1 | 17 | 114_274 | 42.666666666666664 | 640.0 | ARF3 | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000406772 | 2 | 18 | 114_274 | 0 | 567.0 | ARF3 | |
Tgene | GGA1 | chr22:38363177 | chr22:38012929 | ENST00000414350 | 1 | 3 | 114_274 | 42.666666666666664 | 90.0 | ARF3 |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for POLR2F-GGA1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for POLR2F-GGA1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |