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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PPIE-PPIE (FusionGDB2 ID:67113)

Fusion Gene Summary for PPIE-PPIE

check button Fusion gene summary
Fusion gene informationFusion gene name: PPIE-PPIE
Fusion gene ID: 67113
HgeneTgene
Gene symbol

PPIE

PPIE

Gene ID

10450

10450

Gene namepeptidylprolyl isomerase Epeptidylprolyl isomerase E
SynonymsCYP-33|CYP33CYP-33|CYP33
Cytomap

1p34.2

1p34.2

Type of geneprotein-codingprotein-coding
Descriptionpeptidyl-prolyl cis-trans isomerase EPPIase Ecyclophilin-33peptidylprolyl isomerase E (cyclophilin E)rotamase Epeptidyl-prolyl cis-trans isomerase EPPIase Ecyclophilin-33peptidylprolyl isomerase E (cyclophilin E)rotamase E
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000324379, ENST00000356511, 
ENST00000470213, ENST00000372830, 
ENST00000480169, 		ENST00000324379, 
ENST00000356511, ENST00000470213, 
ENST00000372830, ENST00000480169, 
Fusion gene scores* DoF score3 X 4 X 2=248 X 9 X 3=216
# samples 410
** MAII scorelog2(4/24*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0		log2(10/216*10)=-1.11103131238874
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PPIE [Title/Abstract] AND PPIE [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPPIE(40219784)-PPIE(40214654), # samples:1
PPIE(40220792)-PPIE(40221233), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePPIE

GO:0000398

mRNA splicing, via spliceosome

28076346

HgenePPIE

GO:0000413

protein peptidyl-prolyl isomerization

20676357

TgenePPIE

GO:0000398

mRNA splicing, via spliceosome

28076346

TgenePPIE

GO:0000413

protein peptidyl-prolyl isomerization

20676357


check buttonFusion gene breakpoints across PPIE (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PPIE (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/AAU117291PPIEchr1

40219784

+PPIEchr1

40214654

+
ChiTaRS5.0N/ABF948149PPIEchr1

40220792

+PPIEchr1

40221233

-


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Fusion Gene ORF analysis for PPIE-PPIE

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000324379ENST00000324379PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000324379ENST00000356511PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000324379ENST00000470213PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000324379ENST00000372830PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-intronENST00000324379ENST00000480169PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000356511ENST00000324379PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000356511ENST00000356511PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000356511ENST00000470213PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000356511ENST00000372830PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-intronENST00000356511ENST00000480169PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000470213ENST00000324379PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000470213ENST00000356511PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000470213ENST00000470213PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000470213ENST00000372830PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-intronENST00000470213ENST00000480169PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000372830ENST00000324379PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000372830ENST00000356511PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000372830ENST00000470213PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000372830ENST00000372830PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-intronENST00000372830ENST00000480169PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000480169ENST00000324379PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000480169ENST00000356511PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000480169ENST00000470213PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-3CDSENST00000480169ENST00000372830PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-intronENST00000480169ENST00000480169PPIEchr1

40219784

+PPIEchr1

40214654

+
intron-intronENST00000324379ENST00000324379PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000324379ENST00000356511PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000324379ENST00000470213PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000324379ENST00000372830PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000324379ENST00000480169PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000356511ENST00000324379PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000356511ENST00000356511PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000356511ENST00000470213PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000356511ENST00000372830PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000356511ENST00000480169PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000470213ENST00000324379PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000470213ENST00000356511PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000470213ENST00000470213PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000470213ENST00000372830PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000470213ENST00000480169PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000372830ENST00000324379PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000372830ENST00000356511PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000372830ENST00000470213PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000372830ENST00000372830PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000372830ENST00000480169PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000480169ENST00000324379PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000480169ENST00000356511PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000480169ENST00000470213PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000480169ENST00000372830PPIEchr1

40220792

+PPIEchr1

40221233

-
intron-intronENST00000480169ENST00000480169PPIEchr1

40220792

+PPIEchr1

40221233

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for PPIE-PPIE


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PPIE-PPIE


check button Go to

FGviewer for the breakpoints of :-:

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for PPIE-PPIE


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for PPIE-PPIE


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PPIE-PPIE


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PPIE-PPIE


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource