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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:ARMC7-CDR2L (FusionGDB2 ID:6759) |
Fusion Gene Summary for ARMC7-CDR2L |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ARMC7-CDR2L | Fusion gene ID: 6759 | Hgene | Tgene | Gene symbol | ARMC7 | CDR2L | Gene ID | 79637 | 30850 |
| Gene name | armadillo repeat containing 7 | cerebellar degeneration related protein 2 like | |
| Synonyms | - | HUMPPA | |
| Cytomap | 17q25.1 | 17q25.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | armadillo repeat-containing protein 7 | cerebellar degeneration-related protein 2-likeparaneoplastic 62 kDa antigenparaneoplastic antigen | |
| Modification date | 20200327 | 20200313 | |
| UniProtAcc | . | Q86X02 | |
| Ensembl transtripts involved in fusion gene | ENST00000581078, ENST00000582136, ENST00000245543, ENST00000584947, ENST00000579096, | ENST00000337231, | |
| Fusion gene scores | * DoF score | 9 X 3 X 5=135 | 7 X 4 X 6=168 |
| # samples | 9 | 8 | |
| ** MAII score | log2(9/135*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/168*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ARMC7 [Title/Abstract] AND CDR2L [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | ARMC7(73106701)-CDR2L(72995599), # samples:3 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across ARMC7 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across CDR2L (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-R5-A7ZE-01B | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| ChimerDB4 | STAD | TCGA-R5-A7ZE-01B | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| ChimerDB4 | STAD | TCGA-R5-A7ZE-01B | ARMC7 | chr17 | 73106701 | - | CDR2L | chr17 | 72995599 | + |
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Fusion Gene ORF analysis for ARMC7-CDR2L |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000581078 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| In-frame | ENST00000582136 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| In-frame | ENST00000245543 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| In-frame | ENST00000584947 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| intron-3CDS | ENST00000579096 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000582136 | ARMC7 | chr17 | 73106701 | + | ENST00000337231 | CDR2L | chr17 | 72995599 | + | 3591 | 546 | 257 | 1864 | 535 |
| ENST00000245543 | ARMC7 | chr17 | 73106701 | + | ENST00000337231 | CDR2L | chr17 | 72995599 | + | 3582 | 537 | 248 | 1855 | 535 |
| ENST00000584947 | ARMC7 | chr17 | 73106701 | + | ENST00000337231 | CDR2L | chr17 | 72995599 | + | 3388 | 343 | 54 | 1661 | 535 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000582136 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + | 0.00539861 | 0.99460137 |
| ENST00000245543 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + | 0.00543814 | 0.99456185 |
| ENST00000584947 | ENST00000337231 | ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995599 | + | 0.005804568 | 0.9941954 |
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Fusion Genomic Features for ARMC7-CDR2L |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995598 | + | 6.86E-18 | 1 |
| ARMC7 | chr17 | 73106701 | + | CDR2L | chr17 | 72995598 | + | 6.86E-18 | 1 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ARMC7-CDR2L |
| Go to FGviewer for the breakpoints of chr17:73106701-chr17:72995599 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | CDR2L |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | CDR2L | chr17:73106701 | chr17:72995599 | ENST00000337231 | 0 | 5 | 188_265 | 26.333333333333332 | 466.0 | Coiled coil | Ontology_term=ECO:0000255 | |
| Tgene | CDR2L | chr17:73106701 | chr17:72995599 | ENST00000337231 | 0 | 5 | 350_377 | 26.333333333333332 | 466.0 | Coiled coil | Ontology_term=ECO:0000255 | |
| Tgene | CDR2L | chr17:73106701 | chr17:72995599 | ENST00000337231 | 0 | 5 | 38_143 | 26.333333333333332 | 466.0 | Coiled coil | Ontology_term=ECO:0000255 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ARMC7 | chr17:73106701 | chr17:72995599 | ENST00000245543 | + | 2 | 3 | 100_140 | 78.33333333333333 | 199.0 | Repeat | Note=ARM 2 |
| Hgene | ARMC7 | chr17:73106701 | chr17:72995599 | ENST00000245543 | + | 2 | 3 | 57_99 | 78.33333333333333 | 199.0 | Repeat | Note=ARM 1 |
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Fusion Gene Sequence for ARMC7-CDR2L |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000582136_ENST00000337231_TCGA-R5-A7ZE-01B_ARMC7_chr17_73106701_+_CDR2L_chr17_72995599_length(transcript)=3591nt_BP=546nt CCCAGGAGCCGGGGACGGTGCGCCAGTGCCCCCTCCGCGAGCCCCAACCAGTAGACGGTTCCCTGTCTCCCGCGCCCCAATTTCGATTTT CAAACGCAACTCCTACAGGATTCTGAGACCCCGTCCCATCTCCCATATCCCATTTCCAGCTGCAAATTACTGCAGAATCTGAACCCAGGA AAGAAACCCATTTGCCGACCCCCTCTTCCCTCTCCAGACAGGTGGAGAGCGGGTGAGGGTCTCGCTCGGCTTTCCCCCTGCACCTTTCCC ACCCTCCCGCCCGTCCCTGGGGGTCCTCCGTCACCGCGGCCATGGCCCAGAAGCCGAAGGTGGACCCCCACGTCGGGCGGCTGGGATACC TGCAGGCGCTGGTCACGGAATTCCAGGAGACCCAAAGCCAAGACGCCAAGGAGCAAGTCCTCGCCAACCTCGCCAACTTCGCTTATGACC CCAGCAACTACGAGTATCTGCGGCAGCTGCAGGTCCTGGATTTATTTCTCGATTCGCTGTCGGAGGAGAATGAGACCCTGGTGGAGTTTG CTATTGACTTGCACCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCA CCAATGAGGAACAGGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATG AGCAGCTGGACCTGACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGC TGACGGAGACCATTGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGC TCCGGGAGAAGCGGGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCC GCCTACACAGTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCC AGGTGAGCCAGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGT GCGAGATGGAGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTAC TGGGTCCGGACGACCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACG ACTTGGGCGCCCAGGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCA TCGTGGCCAAAGACCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGG AGGTGGACGAGCAGTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCG GCGTGCAGACCTCGCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAG AGAAGAGCCTGAGCCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCT CCAGGATCCAGAAGACCAAGGCTGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCC CAGGGTGGAAGCCGTGGGGTCCCTCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGG CCTCCTGATCCGGAAGCACGCAGCATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGC CAGCCCAAAGGCGCAGCTCTGAGTTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCC TGCGCCTCACCCTCAGACTGGTGACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTT CTAAGAGATTTGCAATGCAAGGTCTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGT TTCCTGGACCACCCACTGCTTCTCCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTC AGAGATGTCCCCTGCCATGCAGAGCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGG ATACTCTTGGCCCACCGCAGATCTGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTG TCTCCTTGGCTTCCAACCCCAGAAATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGC CACCAACTAACCAAGCTTGGCCTCTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCC ACAGGCCAACCCTGGCACAGGTCATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGC CTCCCCTTCACTGGGGACTGGGGTTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCC CATAAAATGCCTGCTCTTCACCTCCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAG TCAAGTTCAGCTAAGAGACACCCAGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACC TTAGAAACCAGAAGAGCCATACAGTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATT TATTTCTAATGGGTAAAGGGGTTTTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGC TGGTGGCGACTGAGTCCTTCTGTACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTA TCTGGGGGAGAGGAGTGTGGAAGGGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGA >In-frame_ENST00000582136_ENST00000337231_TCGA-R5-A7ZE-01B_ARMC7_chr17_73106701_+_CDR2L_chr17_72995599_length(amino acids)=535AA_start in transcript=257_stop in transcript=1864 MHLSHPPARPWGSSVTAAMAQKPKVDPHVGRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENET LVEFAIDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQ KIHGLTETIERLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTFPCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVG ALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEMEACRLRVQELEAELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQP GRGDDLGAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAG -------------------------------------------------------------- >In-frame_ENST00000245543_ENST00000337231_TCGA-R5-A7ZE-01B_ARMC7_chr17_73106701_+_CDR2L_chr17_72995599_length(transcript)=3582nt_BP=537nt CGGGGACGGTGCGCCAGTGCCCCCTCCGCGAGCCCCAACCAGTAGACGGTTCCCTGTCTCCCGCGCCCCAATTTCGATTTTCAAACGCAA CTCCTACAGGATTCTGAGACCCCGTCCCATCTCCCATATCCCATTTCCAGCTGCAAATTACTGCAGAATCTGAACCCAGGAAAGAAACCC ATTTGCCGACCCCCTCTTCCCTCTCCAGACAGGTGGAGAGCGGGTGAGGGTCTCGCTCGGCTTTCCCCCTGCACCTTTCCCACCCTCCCG CCCGTCCCTGGGGGTCCTCCGTCACCGCGGCCATGGCCCAGAAGCCGAAGGTGGACCCCCACGTCGGGCGGCTGGGATACCTGCAGGCGC TGGTCACGGAATTCCAGGAGACCCAAAGCCAAGACGCCAAGGAGCAAGTCCTCGCCAACCTCGCCAACTTCGCTTATGACCCCAGCAACT ACGAGTATCTGCGGCAGCTGCAGGTCCTGGATTTATTTCTCGATTCGCTGTCGGAGGAGAATGAGACCCTGGTGGAGTTTGCTATTGACT TGCACCTAGCTGCGGAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACCAATGAGG AACAGGTGCAGGAGATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAGCAGCTGG ACCTGACAGCCCGGGACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTGACGGAGA CCATTGAGCGCCTCCAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTCCGGGAGA AGCGGGAACGCAGGCGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGCCTACACA GTTCCTCCCTGGAGCTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAGGTGAGCC AGGAGCGGCAGCGCAAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGCGAGATGG AGGCCTGTCGCCTGCGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTGGGTCCGG ACGACCACCTGGCCGAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGACTTGGGCG CCCAGGACGGGGTCTCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATCGTGGCCA AAGACCCAGCCAGCCGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAGGTGGACG AGCAGTACCACGCGCTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGCGTGCAGA CCTCGCGCCCCATCTCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAGAAGAGCC TGAGCCAGCACGTGGAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCCAGGATCC AGAAGACCAAGGCTGACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCCCAGGGTGGA AGCCGTGGGGTCCCTCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGGCCTCCTGAT CCGGAAGCACGCAGCATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGCCAGCCCAAA GGCGCAGCTCTGAGTTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCCTGCGCCTCA CCCTCAGACTGGTGACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTTCTAAGAGAT TTGCAATGCAAGGTCTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGTTTCCTGGAC CACCCACTGCTTCTCCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTCAGAGATGTC CCCTGCCATGCAGAGCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGGATACTCTTG GCCCACCGCAGATCTGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTGTCTCCTTGG CTTCCAACCCCAGAAATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGCCACCAACTA ACCAAGCTTGGCCTCTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCCACAGGCCAA CCCTGGCACAGGTCATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGCCTCCCCTTC ACTGGGGACTGGGGTTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCCCATAAAATG CCTGCTCTTCACCTCCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAGTCAAGTTCA GCTAAGAGACACCCAGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACCTTAGAAACC AGAAGAGCCATACAGTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATTTATTTCTAA TGGGTAAAGGGGTTTTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGCTGGTGGCGA CTGAGTCCTTCTGTACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTATCTGGGGGA GAGGAGTGTGGAAGGGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGAAGTATACGT >In-frame_ENST00000245543_ENST00000337231_TCGA-R5-A7ZE-01B_ARMC7_chr17_73106701_+_CDR2L_chr17_72995599_length(amino acids)=535AA_start in transcript=248_stop in transcript=1855 MHLSHPPARPWGSSVTAAMAQKPKVDPHVGRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENET LVEFAIDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQ KIHGLTETIERLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTFPCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVG ALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEMEACRLRVQELEAELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQP GRGDDLGAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAG -------------------------------------------------------------- >In-frame_ENST00000584947_ENST00000337231_TCGA-R5-A7ZE-01B_ARMC7_chr17_73106701_+_CDR2L_chr17_72995599_length(transcript)=3388nt_BP=343nt TCTTCCCTCTCCAGACAGGTGGAGAGCGGGTGAGGGTCTCGCTCGGCTTTCCCCCTGCACCTTTCCCACCCTCCCGCCCGTCCCTGGGGG TCCTCCGTCACCGCGGCCATGGCCCAGAAGCCGAAGGTGGACCCCCACGTCGGGCGGCTGGGATACCTGCAGGCGCTGGTCACGGAATTC CAGGAGACCCAAAGCCAAGACGCCAAGGAGCAAGTCCTCGCCAACCTCGCCAACTTCGCTTATGACCCCAGCAACTACGAGTATCTGCGG CAGCTGCAGGTCCTGGATTTATTTCTCGATTCGCTGTCGGAGGAGAATGAGACCCTGGTGGAGTTTGCTATTGACTTGCACCTAGCTGCG GAGCTGGGGAAGACTCTGCTGGAGAGGAACAAGGAGCTGGAGGGGTCCCTGCAGCAGATGTACTCCACCAATGAGGAACAGGTGCAGGAG ATCGAGTACCTAACCAAGCAGCTGGACACGCTGCGGCACGTGAACGAGCAGCACGCCAAAGTCTATGAGCAGCTGGACCTGACAGCCCGG GACCTGGAGCTGACCAACCACAGGCTGGTGCTGGAGAGTAAGGCTGCCCAGCAGAAGATCCATGGGCTGACGGAGACCATTGAGCGCCTC CAGGCTCAGGTGGAGGAGCTGCAGGCCCAGGTGGAGCAACTGAGAGGCCTGGAACAGCTGCGAGTGCTCCGGGAGAAGCGGGAACGCAGG CGTACCATCCACACCTTCCCCTGCCTCAAGGAGCTGTGCACCAGCCCCCGGTGCAAGGATGCTTTCCGCCTACACAGTTCCTCCCTGGAG CTGGGCCCGCGGCCCCTGGAGCAGGAGAACGAGCGGCTGCAGACCCTGGTGGGGGCGCTGCGCTCCCAGGTGAGCCAGGAGCGGCAGCGC AAGGAGCGGGCGGAGCGCGAGTACACCGCGGTGCTGCAGGAGTACTCGGAGCTGGAGCGCCAGCTGTGCGAGATGGAGGCCTGTCGCCTG CGTGTGCAGGAGCTGGAGGCCGAGCTGCTGGAGCTGCAGCAGATGAAGCAGGCCAAGACCTACCTACTGGGTCCGGACGACCACCTGGCC GAGGCCCTGCTCGCACCCCTCACGCAGGCCCCTGAGGCCGACGATCCCCAGCCCGGCCGCGGGGACGACTTGGGCGCCCAGGACGGGGTC TCCTCACCGGCAGCCTCTCCAGGCCACGTGGTGCGCAAGAGCTGCAGCGACACTGCGCTCAACGCCATCGTGGCCAAAGACCCAGCCAGC CGGCACGCGGGCAACCTCACACTGCACGCCAACAGCGTGCGCAAGCGGGGCATGTCCATCCTGCGGGAGGTGGACGAGCAGTACCACGCG CTGCTGGAGAAGTACGAGGAGCTGCTGAGCAAGTGCCGGCAGCACGGGGCCGGAGTGCGGCACGCCGGCGTGCAGACCTCGCGCCCCATC TCCCGGGACAGCTCGTGGAGGGACCTGCGCGGGGGTGAGGAGGGCCAGGGTGAGGTCAAGGCAGGAGAGAAGAGCCTGAGCCAGCACGTG GAGGCCGTGGACAAGCGGCTGGAACAGAGCCAGCCCGAGTACAAGGCGCTCTTCAAAGAGATCTTCTCCAGGATCCAGAAGACCAAGGCT GACATCAACGCCACCAAAGTCAAGACGCACAGCAGCAAGTGACCCTTCTCCGGCCTGCAGCCTCCCCCAGGGTGGAAGCCGTGGGGTCCC TCAGGCCTGGGCGGTGCAGCTTCCAGAGAGCGAGCGCCCTTTAGCGGCCTGCCACCACAGCACGCGGCCTCCTGATCCGGAAGCACGCAG CATGTTCCCTGCTGAGCGGAGGCAGCCCACCTGTCCTGCCTCCCAGGAGCCCTTGGCCACCTCGCGCCAGCCCAAAGGCGCAGCTCTGAG TTCAAAGCCAAATGTCCCCACTACCCCAGGGATCCCCCAGCTCCCCCAGCCCCTGGCTTCCTGACCCTGCGCCTCACCCTCAGACTGGTG ACCAGGCTTCTGAAAGCCATTCTGGATCAGTTGGCTTTTTTTTTTTTTTTGGTTAAGTTTGTTTTTTCTAAGAGATTTGCAATGCAAGGT CTCCTTGACCCCTTGCCACAACTGGAAACACTTGAAAGGGGACCCCAGGGCCAGCTGTTTCAGGGGTTTCCTGGACCACCCACTGCTTCT CCCCAACCCTGATGCGCTGACATTCCCTTAGCACCAGCTGTCCCACCTCCAGGGTCCTGACCAGGTCAGAGATGTCCCCTGCCATGCAGA GCAGGAAGCCTCAGCTGGGCCTGGAGTGTCCCTGCTCCAGCCCTGCCAGGGACAGGTTTCTCCCTGGATACTCTTGGCCCACCGCAGATC TGTAGCCAGTCAGAGGAGGAGGAGAAGGAGCCCCTCAGCAGAGTGGTGCAGTTTCGCTCAGAGCTTGTCTCCTTGGCTTCCAACCCCAGA AATGCCTGCTGGGCCTTAAGCTTTCCAGGGGCCGGGGCAGTGGGGAGCCCCCATCCCTTCACACCGCCACCAACTAACCAAGCTTGGCCT CTGACTCCCGTCTCTGTGCTTGCCCCCATCTCAGGGACCATGATGTCTCAGTCACTCCACGCTCCCCACAGGCCAACCCTGGCACAGGTC ATGTCTGCAGCCCCCAGAATGTTCTGGACATGCACCACCAGCCGGTGGTCCCAATGTCCACCCCTGCCTCCCCTTCACTGGGGACTGGGG TTTTCGCCCCATGCTGCATCGTGTTGTATTGGGATGGGGCTGAGGAACATGCTCCCTCCCTCCCTCCCATAAAATGCCTGCTCTTCACCT CCCACCTTTGTGGGGGGCTTTTGAGGACCCAGCTGCGTCAGGAGTTTTGCTTCAAGATGTCAGAAAGTCAAGTTCAGCTAAGAGACACCC AGGTCCCCAGCTTGCCCTGAGCAGCCCTTCAGGGCTTCTGGTTCCTTCTGCCGCCCTTCCTGAGACCTTAGAAACCAGAAGAGCCATACA GTCAGTGGAAGGCGGGGGGGCCCTGGCCTCTGCACCGGGATCCCAGTGGGAACCTTCATGCCTTATTTATTTCTAATGGGTAAAGGGGTT TTCTTACCAAGCATCCCTGACCTCCTGGAGACACCACCTGCTTTCCGGGCGGCACTGTGATGGGAGCTGGTGGCGACTGAGTCCTTCTGT ACGTGCAACTGGGAAACTTTTGTCCTTTGAGGCTAGGCAGCTCCCTGCCCTCCGTGTGTGTCTGTTATCTGGGGGAGAGGAGTGTGGAAG GGTTGGGGGAAGAGCTCCAGCCTGTCTGCTCCCCAGCTCTGTAGTGGCAGACCAGCGTCACCTTTGAAGTATACGTGAGAGAAATATATT >In-frame_ENST00000584947_ENST00000337231_TCGA-R5-A7ZE-01B_ARMC7_chr17_73106701_+_CDR2L_chr17_72995599_length(amino acids)=535AA_start in transcript=54_stop in transcript=1661 MHLSHPPARPWGSSVTAAMAQKPKVDPHVGRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENET LVEFAIDLHLAAELGKTLLERNKELEGSLQQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAAQQ KIHGLTETIERLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTFPCLKELCTSPRCKDAFRLHSSSLELGPRPLEQENERLQTLVG ALRSQVSQERQRKERAEREYTAVLQEYSELERQLCEMEACRLRVQELEAELLELQQMKQAKTYLLGPDDHLAEALLAPLTQAPEADDPQP GRGDDLGAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ARMC7-CDR2L |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ARMC7-CDR2L |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ARMC7-CDR2L |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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