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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PPP2R5C-SCN1B (FusionGDB2 ID:67661) |
Fusion Gene Summary for PPP2R5C-SCN1B |
Fusion gene summary |
Fusion gene information | Fusion gene name: PPP2R5C-SCN1B | Fusion gene ID: 67661 | Hgene | Tgene | Gene symbol | PPP2R5C | SCN1B | Gene ID | 5527 | 6324 |
Gene name | protein phosphatase 2 regulatory subunit B'gamma | sodium voltage-gated channel beta subunit 1 | |
Synonyms | B56G|B56gamma|PR61G | ATFB13|BRGDA5|EIEE52|GEFSP1 | |
Cytomap | 14q32.31 | 19q13.11 | |
Type of gene | protein-coding | protein-coding | |
Description | serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoformB' alpha regulatory subunitPP2A B subunit isoform B'-gammaPP2A B subunit isoform B56-gammaPP2A B subunit isoform PR61-gammaPP2A B subunit isoform R5-gammaprotein phosphat | sodium channel subunit beta-1sodium channel, voltage gated, type I beta subunitsodium channel, voltage-gated, type I, beta | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000422945, ENST00000556068, ENST00000554442, ENST00000328724, ENST00000350249, ENST00000445439, ENST00000334743, ENST00000557095, ENST00000556260, ENST00000556946, ENST00000557714, | ENST00000262631, ENST00000595652, ENST00000415950, ENST00000596348, | |
Fusion gene scores | * DoF score | 18 X 11 X 8=1584 | 4 X 2 X 4=32 |
# samples | 19 | 5 | |
** MAII score | log2(19/1584*10)=-3.05950101174866 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/32*10)=0.643856189774725 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PPP2R5C [Title/Abstract] AND SCN1B [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PPP2R5C(102276373)-SCN1B(35523432), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PPP2R5C | GO:0008285 | negative regulation of cell proliferation | 17245430 |
Tgene | SCN1B | GO:0010765 | positive regulation of sodium ion transport | 19808477 |
Tgene | SCN1B | GO:0035725 | sodium ion transmembrane transport | 18464934|19808477|21051419 |
Tgene | SCN1B | GO:0051899 | membrane depolarization | 21051419 |
Tgene | SCN1B | GO:2000649 | regulation of sodium ion transmembrane transporter activity | 19808477 |
Fusion gene breakpoints across PPP2R5C (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across SCN1B (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-B6-A0RT-01A | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
ChimerDB4 | BRCA | TCGA-B6-A0RT-01A | PPP2R5C | chr14 | 102276373 | - | SCN1B | chr19 | 35523432 | + |
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Fusion Gene ORF analysis for PPP2R5C-SCN1B |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000422945 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000422945 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000422945 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3UTR | ENST00000422945 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000556068 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000556068 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000556068 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3UTR | ENST00000556068 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000554442 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000554442 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000554442 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3UTR | ENST00000554442 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000328724 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000328724 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000328724 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3UTR | ENST00000328724 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000350249 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000350249 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000350249 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
5CDS-3UTR | ENST00000350249 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000445439 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000445439 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000445439 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
5CDS-3UTR | ENST00000445439 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000334743 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000334743 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000334743 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
5CDS-3UTR | ENST00000334743 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000557095 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000557095 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000557095 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
5CDS-3UTR | ENST00000557095 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000556260 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000556260 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3CDS | ENST00000556260 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
intron-3UTR | ENST00000556260 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000556946 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000556946 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000556946 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
5CDS-3UTR | ENST00000556946 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000557714 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000557714 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
In-frame | ENST00000557714 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
5CDS-3UTR | ENST00000557714 | ENST00000596348 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000350249 | PPP2R5C | chr14 | 102276373 | + | ENST00000262631 | SCN1B | chr19 | 35523432 | + | 1508 | 234 | 1453 | 239 | 404 |
ENST00000350249 | PPP2R5C | chr14 | 102276373 | + | ENST00000595652 | SCN1B | chr19 | 35523432 | + | 920 | 234 | 140 | 637 | 165 |
ENST00000350249 | PPP2R5C | chr14 | 102276373 | + | ENST00000415950 | SCN1B | chr19 | 35523432 | + | 1173 | 234 | 140 | 1000 | 286 |
ENST00000445439 | PPP2R5C | chr14 | 102276373 | + | ENST00000262631 | SCN1B | chr19 | 35523432 | + | 1416 | 142 | 1361 | 147 | 404 |
ENST00000445439 | PPP2R5C | chr14 | 102276373 | + | ENST00000595652 | SCN1B | chr19 | 35523432 | + | 828 | 142 | 48 | 545 | 165 |
ENST00000445439 | PPP2R5C | chr14 | 102276373 | + | ENST00000415950 | SCN1B | chr19 | 35523432 | + | 1081 | 142 | 48 | 908 | 286 |
ENST00000334743 | PPP2R5C | chr14 | 102276373 | + | ENST00000262631 | SCN1B | chr19 | 35523432 | + | 1416 | 142 | 1361 | 147 | 404 |
ENST00000334743 | PPP2R5C | chr14 | 102276373 | + | ENST00000595652 | SCN1B | chr19 | 35523432 | + | 828 | 142 | 48 | 545 | 165 |
ENST00000334743 | PPP2R5C | chr14 | 102276373 | + | ENST00000415950 | SCN1B | chr19 | 35523432 | + | 1081 | 142 | 48 | 908 | 286 |
ENST00000557095 | PPP2R5C | chr14 | 102276373 | + | ENST00000262631 | SCN1B | chr19 | 35523432 | + | 1406 | 132 | 1351 | 137 | 404 |
ENST00000557095 | PPP2R5C | chr14 | 102276373 | + | ENST00000595652 | SCN1B | chr19 | 35523432 | + | 818 | 132 | 38 | 535 | 165 |
ENST00000557095 | PPP2R5C | chr14 | 102276373 | + | ENST00000415950 | SCN1B | chr19 | 35523432 | + | 1071 | 132 | 38 | 898 | 286 |
ENST00000556946 | PPP2R5C | chr14 | 102276373 | + | ENST00000262631 | SCN1B | chr19 | 35523432 | + | 1476 | 202 | 1421 | 207 | 404 |
ENST00000556946 | PPP2R5C | chr14 | 102276373 | + | ENST00000595652 | SCN1B | chr19 | 35523432 | + | 888 | 202 | 108 | 605 | 165 |
ENST00000556946 | PPP2R5C | chr14 | 102276373 | + | ENST00000415950 | SCN1B | chr19 | 35523432 | + | 1141 | 202 | 108 | 968 | 286 |
ENST00000557714 | PPP2R5C | chr14 | 102276373 | + | ENST00000262631 | SCN1B | chr19 | 35523432 | + | 1442 | 168 | 1387 | 173 | 404 |
ENST00000557714 | PPP2R5C | chr14 | 102276373 | + | ENST00000595652 | SCN1B | chr19 | 35523432 | + | 854 | 168 | 74 | 571 | 165 |
ENST00000557714 | PPP2R5C | chr14 | 102276373 | + | ENST00000415950 | SCN1B | chr19 | 35523432 | + | 1107 | 168 | 74 | 934 | 286 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000350249 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.003830905 | 0.99616903 |
ENST00000350249 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.005253967 | 0.9947461 |
ENST00000350249 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.07820682 | 0.92179316 |
ENST00000445439 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.003236794 | 0.9967632 |
ENST00000445439 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.004143187 | 0.9958568 |
ENST00000445439 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.06454196 | 0.93545806 |
ENST00000334743 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.003236794 | 0.9967632 |
ENST00000334743 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.004143187 | 0.9958568 |
ENST00000334743 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.06454196 | 0.93545806 |
ENST00000557095 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.003232145 | 0.9967679 |
ENST00000557095 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.004449267 | 0.99555075 |
ENST00000557095 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.06777503 | 0.932225 |
ENST00000556946 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.003954795 | 0.9960452 |
ENST00000556946 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.005653873 | 0.9943461 |
ENST00000556946 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.068916135 | 0.9310838 |
ENST00000557714 | ENST00000262631 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.003228804 | 0.99677116 |
ENST00000557714 | ENST00000595652 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.004077133 | 0.9959229 |
ENST00000557714 | ENST00000415950 | PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523432 | + | 0.062479295 | 0.9375207 |
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Fusion Genomic Features for PPP2R5C-SCN1B |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523431 | + | 1.75E-08 | 1 |
PPP2R5C | chr14 | 102276373 | + | SCN1B | chr19 | 35523431 | + | 1.75E-08 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PPP2R5C-SCN1B |
Go to FGviewer for the breakpoints of chr14:102276373-chr19:35523432 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000262631 | 0 | 6 | 22_150 | 13.333333333333334 | 377.3333333333333 | Domain | Note=Ig-like C2-type | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000415950 | 0 | 3 | 22_150 | 13.333333333333334 | 269.0 | Domain | Note=Ig-like C2-type | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000262631 | 0 | 6 | 183_218 | 13.333333333333334 | 377.3333333333333 | Topological domain | Cytoplasmic | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000262631 | 0 | 6 | 19_160 | 13.333333333333334 | 377.3333333333333 | Topological domain | Extracellular | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000415950 | 0 | 3 | 183_218 | 13.333333333333334 | 269.0 | Topological domain | Cytoplasmic | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000415950 | 0 | 3 | 19_160 | 13.333333333333334 | 269.0 | Topological domain | Extracellular | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000262631 | 0 | 6 | 161_182 | 13.333333333333334 | 377.3333333333333 | Transmembrane | Helical | |
Tgene | SCN1B | chr14:102276373 | chr19:35523432 | ENST00000415950 | 0 | 3 | 161_182 | 13.333333333333334 | 269.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PPP2R5C | chr14:102276373 | chr19:35523432 | ENST00000328724 | + | 1 | 15 | 416_422 | 0 | 541.0 | Motif | Nuclear localization signal |
Hgene | PPP2R5C | chr14:102276373 | chr19:35523432 | ENST00000334743 | + | 1 | 14 | 416_422 | 31.333333333333332 | 525.0 | Motif | Nuclear localization signal |
Hgene | PPP2R5C | chr14:102276373 | chr19:35523432 | ENST00000350249 | + | 1 | 13 | 416_422 | 31.333333333333332 | 486.0 | Motif | Nuclear localization signal |
Hgene | PPP2R5C | chr14:102276373 | chr19:35523432 | ENST00000422945 | + | 1 | 16 | 416_422 | 0 | 556.0 | Motif | Nuclear localization signal |
Hgene | PPP2R5C | chr14:102276373 | chr19:35523432 | ENST00000445439 | + | 1 | 12 | 416_422 | 31.333333333333332 | 450.0 | Motif | Nuclear localization signal |
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Fusion Gene Sequence for PPP2R5C-SCN1B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000350249_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1508nt_BP=234nt AGCTTCATGCCTGCTGACATCACGAACCAGCCAGTTCCCTCCAGCTGCAGAGAGCTTCAGTTTGTCTTTTTTTTTTTAAACTAAAATGGA GGCTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGG ATGCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACT CGGAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCG AGTGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCT TCGAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACT CGGGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGG TAGTGGACAAAGCCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGG CAGAGATGATTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTG AAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACT CTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGG AGGGGGCAGGGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAG CAATACTGCCGCTGCCCCCACCCTGCTTCTGCTGCCTGTTTGGGGAGGGGGGCGGTGAGGTGGGGGCAGCGGCCCCGCACCCCTCCTCCT TGCTGATTTGCACACATTGGCCGCTTCAGACACGCACTTCTGGGGCCAGCCCCTCCCCGCCTCCTCCCTGCCTGGCGGCAGGGGTCGCGA TGATGGGCTGGAGCAGTTTGGGGCAGGGGGTTCTGGGACCCACTCCGACTCCCCCTCCCCGGCATCATTTCCCCTCCCGCTTCCTCCGGC TGGACCTGGGGTCCCCCCTCCCTGTAATGCACTCCTGCCCCGGCCCAACCTCGCCCTCTCTCACCAGCCTTGAACTGTGGCCACCTAGAA >In-frame_ENST00000350249_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=404AA_start in transcript=1453_stop in transcript=239 MNGPLSRWPQFKAGERGRGWAGAGVHYREGGPQVQPEEAGGEMMPGRGSRSGSQNPLPQTAPAHHRDPCRQAGRRRGGAGPRSACLKRPM CANQQGGGVRGRCPHLTAPLPKQAAEAGWGQRQYCFTHHAWRCAAGGAGAGGGESGGASQAPCPLPPQWLRRQDSEAFWGPGVATPTLGA GGAWRVPITAGSSLRRGPGPGLFGHLDARAVLFAFRGDGQVFRGILLCSSLRGGSDLLVAVNHLCHEPYGQHHNEHIHHDLRHDGCHVSV GFVHYLNVDLLDDAGVVLVVFEEEQAVDVALVVARVVVGDIGDEDRQILQVFGAPAAIPHHAALEALILLQLQHLILIAQDLDKLLSALL -------------------------------------------------------------- >In-frame_ENST00000350249_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=920nt_BP=234nt AGCTTCATGCCTGCTGACATCACGAACCAGCCAGTTCCCTCCAGCTGCAGAGAGCTTCAGTTTGTCTTTTTTTTTTTAAACTAAAATGGA GGCTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGG ATGCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACT CGGAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCG AGTGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCCA TCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCTG CCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGG CCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTG GCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACTT TCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGCCGCTGCCCCCACCCTGCTTCTGCT >In-frame_ENST00000350249_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=165AA_start in transcript=140_stop in transcript=637 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKKIH -------------------------------------------------------------- >In-frame_ENST00000350249_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1173nt_BP=234nt AGCTTCATGCCTGCTGACATCACGAACCAGCCAGTTCCCTCCAGCTGCAGAGAGCTTCAGTTTGTCTTTTTTTTTTTAAACTAAAATGGA GGCTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGG ATGCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACT CGGAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCG AGTGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCT TCGAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACT CGGGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGG TAGTGGACAAAGGTGAGTCGGGTGCTGCCTGCCCCTTTACCGTCACCCACCGGAGAGCCAGATGGAGGGACAGATGGCAGGCAGTGGACA GGACAGGCTGGCTCTGTGCCTGGCCAGCCAACCGCCCACAGCAGCGGGCTGAGGGGGAGGGGAGCAGCCCCTCCTGCCCACTCCAGCTCT GGCCTCTGTTTCTCTCCAGCCCACGGAGAGGTCAAAGCATGCCTGTCCCCCACAGACGCTCCGGGTACAGAACCCAGCTCTGTCACCTGT GCTGTATGACCTCTGGCAGGTGCCTTCTGTCTCTGAGCCAAAGGGTTGTCCTGGGCTTGCCCGGGATAATAATCCGATGTGTTTCTCGGG GTGTGGTTTGAGCCATTCTTCCATCATGGGGTTCATGAGGATTGAGCAGCTGCAGGCACACGCCTGGCTTCCAGCAGAGCCTTGCAGGTG GTGGCGAGGGTGGCGGTTCTTACTGTTCGAGTAGCTCAGCCCTGCTGCCCTCTGTGGTGATGAGGCAAGAGAGCGTGCCACCTAGAGCAG >In-frame_ENST00000350249_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=286AA_start in transcript=140_stop in transcript=1000 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILR YENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTH RRARWRDRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTSGRCLLSLSQRVV -------------------------------------------------------------- >In-frame_ENST00000445439_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1416nt_BP=142nt CTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGAT GCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCG GAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAG TGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTC GAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCG GGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTA GTGGACAAAGCCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCA GAGATGATTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAA AGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCT CCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAG GGGGCAGGGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCA ATACTGCCGCTGCCCCCACCCTGCTTCTGCTGCCTGTTTGGGGAGGGGGGCGGTGAGGTGGGGGCAGCGGCCCCGCACCCCTCCTCCTTG CTGATTTGCACACATTGGCCGCTTCAGACACGCACTTCTGGGGCCAGCCCCTCCCCGCCTCCTCCCTGCCTGGCGGCAGGGGTCGCGATG ATGGGCTGGAGCAGTTTGGGGCAGGGGGTTCTGGGACCCACTCCGACTCCCCCTCCCCGGCATCATTTCCCCTCCCGCTTCCTCCGGCTG GACCTGGGGTCCCCCCTCCCTGTAATGCACTCCTGCCCCGGCCCAACCTCGCCCTCTCTCACCAGCCTTGAACTGTGGCCACCTAGAAAG >In-frame_ENST00000445439_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=404AA_start in transcript=1361_stop in transcript=147 MNGPLSRWPQFKAGERGRGWAGAGVHYREGGPQVQPEEAGGEMMPGRGSRSGSQNPLPQTAPAHHRDPCRQAGRRRGGAGPRSACLKRPM CANQQGGGVRGRCPHLTAPLPKQAAEAGWGQRQYCFTHHAWRCAAGGAGAGGGESGGASQAPCPLPPQWLRRQDSEAFWGPGVATPTLGA GGAWRVPITAGSSLRRGPGPGLFGHLDARAVLFAFRGDGQVFRGILLCSSLRGGSDLLVAVNHLCHEPYGQHHNEHIHHDLRHDGCHVSV GFVHYLNVDLLDDAGVVLVVFEEEQAVDVALVVARVVVGDIGDEDRQILQVFGAPAAIPHHAALEALILLQLQHLILIAQDLDKLLSALL -------------------------------------------------------------- >In-frame_ENST00000445439_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=828nt_BP=142nt CTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGAT GCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCG GAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAG TGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCCATC GTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCTGCC GCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCC GAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGC CACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACTTTC GCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGCCGCTGCCCCCACCCTGCTTCTGCTGC >In-frame_ENST00000445439_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=165AA_start in transcript=48_stop in transcript=545 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKKIH -------------------------------------------------------------- >In-frame_ENST00000445439_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1081nt_BP=142nt CTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGAT GCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCG GAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAG TGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTC GAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCG GGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTA GTGGACAAAGGTGAGTCGGGTGCTGCCTGCCCCTTTACCGTCACCCACCGGAGAGCCAGATGGAGGGACAGATGGCAGGCAGTGGACAGG ACAGGCTGGCTCTGTGCCTGGCCAGCCAACCGCCCACAGCAGCGGGCTGAGGGGGAGGGGAGCAGCCCCTCCTGCCCACTCCAGCTCTGG CCTCTGTTTCTCTCCAGCCCACGGAGAGGTCAAAGCATGCCTGTCCCCCACAGACGCTCCGGGTACAGAACCCAGCTCTGTCACCTGTGC TGTATGACCTCTGGCAGGTGCCTTCTGTCTCTGAGCCAAAGGGTTGTCCTGGGCTTGCCCGGGATAATAATCCGATGTGTTTCTCGGGGT GTGGTTTGAGCCATTCTTCCATCATGGGGTTCATGAGGATTGAGCAGCTGCAGGCACACGCCTGGCTTCCAGCAGAGCCTTGCAGGTGGT GGCGAGGGTGGCGGTTCTTACTGTTCGAGTAGCTCAGCCCTGCTGCCCTCTGTGGTGATGAGGCAAGAGAGCGTGCCACCTAGAGCAGAG >In-frame_ENST00000445439_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=286AA_start in transcript=48_stop in transcript=908 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILR YENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTH RRARWRDRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTSGRCLLSLSQRVV -------------------------------------------------------------- >In-frame_ENST00000334743_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1416nt_BP=142nt CTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGAT GCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCG GAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAG TGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTC GAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCG GGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTA GTGGACAAAGCCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCA GAGATGATTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAA AGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCT CCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAG GGGGCAGGGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCA ATACTGCCGCTGCCCCCACCCTGCTTCTGCTGCCTGTTTGGGGAGGGGGGCGGTGAGGTGGGGGCAGCGGCCCCGCACCCCTCCTCCTTG CTGATTTGCACACATTGGCCGCTTCAGACACGCACTTCTGGGGCCAGCCCCTCCCCGCCTCCTCCCTGCCTGGCGGCAGGGGTCGCGATG ATGGGCTGGAGCAGTTTGGGGCAGGGGGTTCTGGGACCCACTCCGACTCCCCCTCCCCGGCATCATTTCCCCTCCCGCTTCCTCCGGCTG GACCTGGGGTCCCCCCTCCCTGTAATGCACTCCTGCCCCGGCCCAACCTCGCCCTCTCTCACCAGCCTTGAACTGTGGCCACCTAGAAAG >In-frame_ENST00000334743_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=404AA_start in transcript=1361_stop in transcript=147 MNGPLSRWPQFKAGERGRGWAGAGVHYREGGPQVQPEEAGGEMMPGRGSRSGSQNPLPQTAPAHHRDPCRQAGRRRGGAGPRSACLKRPM CANQQGGGVRGRCPHLTAPLPKQAAEAGWGQRQYCFTHHAWRCAAGGAGAGGGESGGASQAPCPLPPQWLRRQDSEAFWGPGVATPTLGA GGAWRVPITAGSSLRRGPGPGLFGHLDARAVLFAFRGDGQVFRGILLCSSLRGGSDLLVAVNHLCHEPYGQHHNEHIHHDLRHDGCHVSV GFVHYLNVDLLDDAGVVLVVFEEEQAVDVALVVARVVVGDIGDEDRQILQVFGAPAAIPHHAALEALILLQLQHLILIAQDLDKLLSALL -------------------------------------------------------------- >In-frame_ENST00000334743_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=828nt_BP=142nt CTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGAT GCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCG GAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAG TGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCCATC GTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCTGCC GCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCC GAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGC CACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACTTTC GCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGCCGCTGCCCCCACCCTGCTTCTGCTGC >In-frame_ENST00000334743_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=165AA_start in transcript=48_stop in transcript=545 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKKIH -------------------------------------------------------------- >In-frame_ENST00000334743_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1081nt_BP=142nt CTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGAT GCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCG GAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAG TGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTC GAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCG GGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTA GTGGACAAAGGTGAGTCGGGTGCTGCCTGCCCCTTTACCGTCACCCACCGGAGAGCCAGATGGAGGGACAGATGGCAGGCAGTGGACAGG ACAGGCTGGCTCTGTGCCTGGCCAGCCAACCGCCCACAGCAGCGGGCTGAGGGGGAGGGGAGCAGCCCCTCCTGCCCACTCCAGCTCTGG CCTCTGTTTCTCTCCAGCCCACGGAGAGGTCAAAGCATGCCTGTCCCCCACAGACGCTCCGGGTACAGAACCCAGCTCTGTCACCTGTGC TGTATGACCTCTGGCAGGTGCCTTCTGTCTCTGAGCCAAAGGGTTGTCCTGGGCTTGCCCGGGATAATAATCCGATGTGTTTCTCGGGGT GTGGTTTGAGCCATTCTTCCATCATGGGGTTCATGAGGATTGAGCAGCTGCAGGCACACGCCTGGCTTCCAGCAGAGCCTTGCAGGTGGT GGCGAGGGTGGCGGTTCTTACTGTTCGAGTAGCTCAGCCCTGCTGCCCTCTGTGGTGATGAGGCAAGAGAGCGTGCCACCTAGAGCAGAG >In-frame_ENST00000334743_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=286AA_start in transcript=48_stop in transcript=908 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILR YENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTH RRARWRDRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTSGRCLLSLSQRVV -------------------------------------------------------------- >In-frame_ENST00000557095_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1406nt_BP=132nt GCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACT CCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGG CCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAGTGGACCTTCC GCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCG TGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCGGGCGACTACG AGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTAGTGGACAAAG CCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTT ACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGA ACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCG CCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGG GCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGCCGC TGCCCCCACCCTGCTTCTGCTGCCTGTTTGGGGAGGGGGGCGGTGAGGTGGGGGCAGCGGCCCCGCACCCCTCCTCCTTGCTGATTTGCA CACATTGGCCGCTTCAGACACGCACTTCTGGGGCCAGCCCCTCCCCGCCTCCTCCCTGCCTGGCGGCAGGGGTCGCGATGATGGGCTGGA GCAGTTTGGGGCAGGGGGTTCTGGGACCCACTCCGACTCCCCCTCCCCGGCATCATTTCCCCTCCCGCTTCCTCCGGCTGGACCTGGGGT CCCCCCTCCCTGTAATGCACTCCTGCCCCGGCCCAACCTCGCCCTCTCTCACCAGCCTTGAACTGTGGCCACCTAGAAAGGGGCCCATTC >In-frame_ENST00000557095_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=404AA_start in transcript=1351_stop in transcript=137 MNGPLSRWPQFKAGERGRGWAGAGVHYREGGPQVQPEEAGGEMMPGRGSRSGSQNPLPQTAPAHHRDPCRQAGRRRGGAGPRSACLKRPM CANQQGGGVRGRCPHLTAPLPKQAAEAGWGQRQYCFTHHAWRCAAGGAGAGGGESGGASQAPCPLPPQWLRRQDSEAFWGPGVATPTLGA GGAWRVPITAGSSLRRGPGPGLFGHLDARAVLFAFRGDGQVFRGILLCSSLRGGSDLLVAVNHLCHEPYGQHHNEHIHHDLRHDGCHVSV GFVHYLNVDLLDDAGVVLVVFEEEQAVDVALVVARVVVGDIGDEDRQILQVFGAPAAIPHHAALEALILLQLQHLILIAQDLDKLLSALL -------------------------------------------------------------- >In-frame_ENST00000557095_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=818nt_BP=132nt GCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACT CCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGG CCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAGTGGACCTTCC GCCAGAAGGGCACTGAGGAGTTTGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCCATCGTGTCTGAGA TCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGA CTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCT GGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGG CCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCA GCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGCCGCTGCCCCCACCCTGCTTCTGCTGCCTGTTTGGGG >In-frame_ENST00000557095_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=165AA_start in transcript=38_stop in transcript=535 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKKIH -------------------------------------------------------------- >In-frame_ENST00000557095_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1071nt_BP=132nt GCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACT CCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGG CCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAGTGGACCTTCC GCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCG TGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCGGGCGACTACG AGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTAGTGGACAAAG GTGAGTCGGGTGCTGCCTGCCCCTTTACCGTCACCCACCGGAGAGCCAGATGGAGGGACAGATGGCAGGCAGTGGACAGGACAGGCTGGC TCTGTGCCTGGCCAGCCAACCGCCCACAGCAGCGGGCTGAGGGGGAGGGGAGCAGCCCCTCCTGCCCACTCCAGCTCTGGCCTCTGTTTC TCTCCAGCCCACGGAGAGGTCAAAGCATGCCTGTCCCCCACAGACGCTCCGGGTACAGAACCCAGCTCTGTCACCTGTGCTGTATGACCT CTGGCAGGTGCCTTCTGTCTCTGAGCCAAAGGGTTGTCCTGGGCTTGCCCGGGATAATAATCCGATGTGTTTCTCGGGGTGTGGTTTGAG CCATTCTTCCATCATGGGGTTCATGAGGATTGAGCAGCTGCAGGCACACGCCTGGCTTCCAGCAGAGCCTTGCAGGTGGTGGCGAGGGTG >In-frame_ENST00000557095_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=286AA_start in transcript=38_stop in transcript=898 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILR YENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTH RRARWRDRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTSGRCLLSLSQRVV -------------------------------------------------------------- >In-frame_ENST00000556946_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1476nt_BP=202nt AGTTCCCTCCAGCTGCAGAGAGCTTCAGTTTGTCTTTTTTTTTTTAAACTAAAATGGAGGCTGGTTTCTTGCCTTAAGGAGCCCATTGCC TTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACTCCAATGGGCCTTTCCAGCCC GTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTC AAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGCACTGAGGAG TTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCGTGGTGTGGAATGGCAGCCGG GGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCGGGCGACTACGAGTGCCACGTCTACCGCCTG CTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCC ATCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCT GCCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTG GCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGT GGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACT TTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGCCGCTGCCCCCACCCTGCTTCTGC TGCCTGTTTGGGGAGGGGGGCGGTGAGGTGGGGGCAGCGGCCCCGCACCCCTCCTCCTTGCTGATTTGCACACATTGGCCGCTTCAGACA CGCACTTCTGGGGCCAGCCCCTCCCCGCCTCCTCCCTGCCTGGCGGCAGGGGTCGCGATGATGGGCTGGAGCAGTTTGGGGCAGGGGGTT CTGGGACCCACTCCGACTCCCCCTCCCCGGCATCATTTCCCCTCCCGCTTCCTCCGGCTGGACCTGGGGTCCCCCCTCCCTGTAATGCAC TCCTGCCCCGGCCCAACCTCGCCCTCTCTCACCAGCCTTGAACTGTGGCCACCTAGAAAGGGGCCCATTCAGCCTCGTCTCTTTACAGAA >In-frame_ENST00000556946_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=404AA_start in transcript=1421_stop in transcript=207 MNGPLSRWPQFKAGERGRGWAGAGVHYREGGPQVQPEEAGGEMMPGRGSRSGSQNPLPQTAPAHHRDPCRQAGRRRGGAGPRSACLKRPM CANQQGGGVRGRCPHLTAPLPKQAAEAGWGQRQYCFTHHAWRCAAGGAGAGGGESGGASQAPCPLPPQWLRRQDSEAFWGPGVATPTLGA GGAWRVPITAGSSLRRGPGPGLFGHLDARAVLFAFRGDGQVFRGILLCSSLRGGSDLLVAVNHLCHEPYGQHHNEHIHHDLRHDGCHVSV GFVHYLNVDLLDDAGVVLVVFEEEQAVDVALVVARVVVGDIGDEDRQILQVFGAPAAIPHHAALEALILLQLQHLILIAQDLDKLLSALL -------------------------------------------------------------- >In-frame_ENST00000556946_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=888nt_BP=202nt AGTTCCCTCCAGCTGCAGAGAGCTTCAGTTTGTCTTTTTTTTTTTAAACTAAAATGGAGGCTGGTTTCTTGCCTTAAGGAGCCCATTGCC TTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACTCCAATGGGCCTTTCCAGCCC GTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTC AAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGCACTGAGGAG TTTGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATT GTGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCC TCGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAA GGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTC CTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGC >In-frame_ENST00000556946_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=165AA_start in transcript=108_stop in transcript=605 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKKIH -------------------------------------------------------------- >In-frame_ENST00000556946_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1141nt_BP=202nt AGTTCCCTCCAGCTGCAGAGAGCTTCAGTTTGTCTTTTTTTTTTTAAACTAAAATGGAGGCTGGTTTCTTGCCTTAAGGAGCCCATTGCC TTTCCCGCTGAAGTCTAGATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACTCCAATGGGCCTTTCCAGCCC GTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCTGCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTC AAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCGAGACCAACGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGCACTGAGGAG TTTGTCAAGATCCTGCGCTATGAGAATGAGGTGTTGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCGTGGTGTGGAATGGCAGCCGG GGCACCAAAGACCTGCAGGATCTGTCTATCTTCATCACCAATGTCACCTACAACCACTCGGGCGACTACGAGTGCCACGTCTACCGCCTG CTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGGTGAGTCGGGTGCTGCCTGC CCCTTTACCGTCACCCACCGGAGAGCCAGATGGAGGGACAGATGGCAGGCAGTGGACAGGACAGGCTGGCTCTGTGCCTGGCCAGCCAAC CGCCCACAGCAGCGGGCTGAGGGGGAGGGGAGCAGCCCCTCCTGCCCACTCCAGCTCTGGCCTCTGTTTCTCTCCAGCCCACGGAGAGGT CAAAGCATGCCTGTCCCCCACAGACGCTCCGGGTACAGAACCCAGCTCTGTCACCTGTGCTGTATGACCTCTGGCAGGTGCCTTCTGTCT CTGAGCCAAAGGGTTGTCCTGGGCTTGCCCGGGATAATAATCCGATGTGTTTCTCGGGGTGTGGTTTGAGCCATTCTTCCATCATGGGGT TCATGAGGATTGAGCAGCTGCAGGCACACGCCTGGCTTCCAGCAGAGCCTTGCAGGTGGTGGCGAGGGTGGCGGTTCTTACTGTTCGAGT >In-frame_ENST00000556946_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=286AA_start in transcript=108_stop in transcript=968 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILR YENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTH RRARWRDRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTSGRCLLSLSQRVV -------------------------------------------------------------- >In-frame_ENST00000557714_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1442nt_BP=168nt TTTTTTTTTTTAAACTAAAATGGAGGCTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATA AAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCT GCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCG AGACCAACGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGT TGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCA TCACCAATGTCACCTACAACCACTCGGGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCG TCGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGCCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATTG TGGTGTTGACCATATGGCTCGTGGCAGAGATGATTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCCT CGGAATACCTGGCCATCACCTCTGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAG GAAGAGCCAGCCGTAATGGGGACTCTCCAGGCACCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCC TGCCGACGGAGCCACTGGGGTGGGAGGGGGCAGGGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCG CACCGCCATGCATGATGGGTAAAGCAATACTGCCGCTGCCCCCACCCTGCTTCTGCTGCCTGTTTGGGGAGGGGGGCGGTGAGGTGGGGG CAGCGGCCCCGCACCCCTCCTCCTTGCTGATTTGCACACATTGGCCGCTTCAGACACGCACTTCTGGGGCCAGCCCCTCCCCGCCTCCTC CCTGCCTGGCGGCAGGGGTCGCGATGATGGGCTGGAGCAGTTTGGGGCAGGGGGTTCTGGGACCCACTCCGACTCCCCCTCCCCGGCATC ATTTCCCCTCCCGCTTCCTCCGGCTGGACCTGGGGTCCCCCCTCCCTGTAATGCACTCCTGCCCCGGCCCAACCTCGCCCTCTCTCACCA GCCTTGAACTGTGGCCACCTAGAAAGGGGCCCATTCAGCCTCGTCTCTTTACAGAAGTAGTTTTGTTCATGAAATAAAGACTCTTGGACT >In-frame_ENST00000557714_ENST00000262631_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=404AA_start in transcript=1387_stop in transcript=173 MNGPLSRWPQFKAGERGRGWAGAGVHYREGGPQVQPEEAGGEMMPGRGSRSGSQNPLPQTAPAHHRDPCRQAGRRRGGAGPRSACLKRPM CANQQGGGVRGRCPHLTAPLPKQAAEAGWGQRQYCFTHHAWRCAAGGAGAGGGESGGASQAPCPLPPQWLRRQDSEAFWGPGVATPTLGA GGAWRVPITAGSSLRRGPGPGLFGHLDARAVLFAFRGDGQVFRGILLCSSLRGGSDLLVAVNHLCHEPYGQHHNEHIHHDLRHDGCHVSV GFVHYLNVDLLDDAGVVLVVFEEEQAVDVALVVARVVVGDIGDEDRQILQVFGAPAAIPHHAALEALILLQLQHLILIAQDLDKLLSALL -------------------------------------------------------------- >In-frame_ENST00000557714_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=854nt_BP=168nt TTTTTTTTTTTAAACTAAAATGGAGGCTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATA AAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCT GCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCG AGACCAACGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGAAGATCCACATTGAGGTAGTGGACA AAGCCAACAGAGACATGGCATCCATCGTGTCTGAGATCATGATGTATGTGCTCATTGTGGTGTTGACCATATGGCTCGTGGCAGAGATGA TTTACTGCTACAAGAAGATCGCTGCCGCCACGGAGACTGCTGCACAGGAGAATGCCTCGGAATACCTGGCCATCACCTCTGAAAGCAAAG AGAACTGCACGGGCGTCCAGGTGGCCGAATAGCCCTGGCCCTGGGCCCCGCCTCAAGGAAGAGCCAGCCGTAATGGGGACTCTCCAGGCA CCGCCTGCCCCCAGCGTGGGGGTGGCCACTCCTGGGCCCCAGAAAGCCTCAGAGTCCTGCCGACGGAGCCACTGGGGTGGGAGGGGGCAG GGGGCTTGGCTCGCACCCCCACTTTCGCCTCCTCCAGCTCCTGCCCCGCCGGCCGCGCACCGCCATGCATGATGGGTAAAGCAATACTGC >In-frame_ENST00000557714_ENST00000595652_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=165AA_start in transcript=74_stop in transcript=571 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKKIH -------------------------------------------------------------- >In-frame_ENST00000557714_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(transcript)=1107nt_BP=168nt TTTTTTTTTTTAAACTAAAATGGAGGCTGGTTTCTTGCCTTAAGGAGCCCATTGCCTTTCCCGCTGAAGTCTAGATGTTGACATGTAATA AAGCGGGCAGCAGGATGGTGGTGGATGCGGCCAACTCCAATGGGCCTTTCCAGCCCGTGGTCCTTCTCCATATTCGAGTGTCCTCAGCCT GCGGGGGCTGCGTGGAGGTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTCAAAATTCTTTGCATCTCCTGCAAGCGCCGCAGCG AGACCAACGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGCACTGAGGAGTTTGTCAAGATCCTGCGCTATGAGAATGAGGTGT TGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCGTGGTGTGGAATGGCAGCCGGGGCACCAAAGACCTGCAGGATCTGTCTATCTTCA TCACCAATGTCACCTACAACCACTCGGGCGACTACGAGTGCCACGTCTACCGCCTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCG TCGTCAAGAAGATCCACATTGAGGTAGTGGACAAAGGTGAGTCGGGTGCTGCCTGCCCCTTTACCGTCACCCACCGGAGAGCCAGATGGA GGGACAGATGGCAGGCAGTGGACAGGACAGGCTGGCTCTGTGCCTGGCCAGCCAACCGCCCACAGCAGCGGGCTGAGGGGGAGGGGAGCA GCCCCTCCTGCCCACTCCAGCTCTGGCCTCTGTTTCTCTCCAGCCCACGGAGAGGTCAAAGCATGCCTGTCCCCCACAGACGCTCCGGGT ACAGAACCCAGCTCTGTCACCTGTGCTGTATGACCTCTGGCAGGTGCCTTCTGTCTCTGAGCCAAAGGGTTGTCCTGGGCTTGCCCGGGA TAATAATCCGATGTGTTTCTCGGGGTGTGGTTTGAGCCATTCTTCCATCATGGGGTTCATGAGGATTGAGCAGCTGCAGGCACACGCCTG GCTTCCAGCAGAGCCTTGCAGGTGGTGGCGAGGGTGGCGGTTCTTACTGTTCGAGTAGCTCAGCCCTGCTGCCCTCTGTGGTGATGAGGC >In-frame_ENST00000557714_ENST00000415950_TCGA-B6-A0RT-01A_PPP2R5C_chr14_102276373_+_SCN1B_chr19_35523432_length(amino acids)=286AA_start in transcript=74_stop in transcript=934 MLTCNKAGSRMVVDAANSNGPFQPVVLLHIRVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILR YENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTH RRARWRDRWQAVDRTGWLCAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTSGRCLLSLSQRVV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PPP2R5C-SCN1B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PPP2R5C-SCN1B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PPP2R5C-SCN1B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PPP2R5C | C0023434 | Chronic Lymphocytic Leukemia | 1 | CTD_human |
Hgene | PPP2R5C | C0238463 | Papillary thyroid carcinoma | 1 | CTD_human |
Hgene | PPP2R5C | C1257806 | Chromosomal Instability | 1 | CTD_human |
Hgene | PPP2R5C | C1449861 | Micronuclei, Chromosome-Defective | 1 | CTD_human |
Hgene | PPP2R5C | C1449862 | Micronuclei, Genotoxicant-Induced | 1 | CTD_human |
Hgene | PPP2R5C | C3501843 | Nonmedullary Thyroid Carcinoma | 1 | CTD_human |
Hgene | PPP2R5C | C3501844 | Familial Nonmedullary Thyroid Cancer | 1 | CTD_human |
Tgene | SCN1B | C0264893 | Nodal rhythm disorder | 7 | CLINGEN |
Tgene | SCN1B | C0348626 | Other specified cardiac arrhythmias | 7 | CLINGEN |
Tgene | SCN1B | C0428908 | Sinus Node Dysfunction (disorder) | 7 | CLINGEN |
Tgene | SCN1B | C1142166 | Brugada Syndrome (disorder) | 7 | CLINGEN;CTD_human |
Tgene | SCN1B | C1399226 | Ectopic rhythm | 7 | CLINGEN |
Tgene | SCN1B | C2748542 | CARDIAC CONDUCTION DEFECT, NONSPECIFIC (disorder) | 7 | CLINGEN;GENOMICS_ENGLAND |
Tgene | SCN1B | C4551804 | Brugada Syndrome 1 | 7 | CLINGEN;CTD_human |
Tgene | SCN1B | C1858672 | GENERALIZED EPILEPSY WITH FEBRILE SEIZURES PLUS, TYPE 1 | 6 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Tgene | SCN1B | C4479236 | EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 52 | 5 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Tgene | SCN1B | C0751122 | Infantile Severe Myoclonic Epilepsy | 4 | ORPHANET |
Tgene | SCN1B | C2748541 | Brugada Syndrome 5 | 4 | CTD_human;GENOMICS_ENGLAND |
Tgene | SCN1B | C3809311 | ATRIAL FIBRILLATION, FAMILIAL, 13 | 3 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Tgene | SCN1B | C0009952 | Febrile Convulsions | 1 | CTD_human |
Tgene | SCN1B | C0038644 | Sudden infant death syndrome | 1 | CTD_human |
Tgene | SCN1B | C0149886 | Seizure, Febrile, Simple | 1 | CTD_human |
Tgene | SCN1B | C0751057 | Seizure, Febrile, Complex | 1 | CTD_human |
Tgene | SCN1B | C1721096 | Brugada ECG Pattern | 1 | CTD_human |
Tgene | SCN1B | C1843687 | ATRIAL FIBRILLATION, FAMILIAL, 1 (disorder) | 1 | ORPHANET |
Tgene | SCN1B | C1879286 | Hereditary bundle branch system defect | 1 | ORPHANET |