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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PRKCB-RPS2 (FusionGDB2 ID:68310)

Fusion Gene Summary for PRKCB-RPS2

check button Fusion gene summary
Fusion gene informationFusion gene name: PRKCB-RPS2
Fusion gene ID: 68310
HgeneTgene
Gene symbol

PRKCB

RPS2

Gene ID

5579

6187

Gene nameprotein kinase C betaribosomal protein S2
SynonymsPKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2LLREP3|S2
Cytomap

16p12.2-p12.1

16p13.3

Type of geneprotein-codingprotein-coding
Descriptionprotein kinase C beta typePKC-Bprotein kinase C, beta 1 polypeptide40S ribosomal protein S240S ribosomal protein S4OK/KNS-cl.6protein LLRep3small ribosomal subunit protein uS5
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000321728, ENST00000303531, 
ENST00000482000, ENST00000498058, 
ENST00000343262, ENST00000526522, 
ENST00000530225, ENST00000529806, 
Fusion gene scores* DoF score8 X 8 X 3=19210 X 8 X 4=320
# samples 811
** MAII scorelog2(8/192*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(11/320*10)=-1.5405683813627
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PRKCB [Title/Abstract] AND RPS2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPRKCB(24135302)-RPS2(2013257), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePRKCB

GO:0010827

regulation of glucose transmembrane transport

25982116

HgenePRKCB

GO:0035408

histone H3-T6 phosphorylation

20228790

TgeneRPS2

GO:0051443

positive regulation of ubiquitin-protein transferase activity

18573314


check buttonFusion gene breakpoints across PRKCB (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across RPS2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-KK-A8I7PRKCBchr16

24135302

+RPS2chr16

2013257

-


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Fusion Gene ORF analysis for PRKCB-RPS2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000321728ENST00000343262PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000321728ENST00000526522PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000321728ENST00000530225PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000321728ENST00000529806PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000303531ENST00000343262PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000303531ENST00000526522PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000303531ENST00000530225PRKCBchr16

24135302

+RPS2chr16

2013257

-
In-frameENST00000303531ENST00000529806PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000482000ENST00000343262PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000482000ENST00000526522PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000482000ENST00000530225PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000482000ENST00000529806PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000498058ENST00000343262PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000498058ENST00000526522PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000498058ENST00000530225PRKCBchr16

24135302

+RPS2chr16

2013257

-
intron-3CDSENST00000498058ENST00000529806PRKCBchr16

24135302

+RPS2chr16

2013257

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000321728PRKCBchr1624135302+ENST00000343262RPS2chr162013257-190112401751854559
ENST00000321728PRKCBchr1624135302+ENST00000526522RPS2chr162013257-171912401751680501
ENST00000321728PRKCBchr1624135302+ENST00000530225RPS2chr162013257-173212401751566463
ENST00000321728PRKCBchr1624135302+ENST00000529806RPS2chr162013257-186912401751692505
ENST00000303531PRKCBchr1624135302+ENST00000343262RPS2chr162013257-187812171521831559
ENST00000303531PRKCBchr1624135302+ENST00000526522RPS2chr162013257-169612171521657501
ENST00000303531PRKCBchr1624135302+ENST00000530225RPS2chr162013257-170912171521543463
ENST00000303531PRKCBchr1624135302+ENST00000529806RPS2chr162013257-184612171521669505

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000321728ENST00000343262PRKCBchr1624135302+RPS2chr162013257-0.0084384260.9915616
ENST00000321728ENST00000526522PRKCBchr1624135302+RPS2chr162013257-0.0084346560.99156535
ENST00000321728ENST00000530225PRKCBchr1624135302+RPS2chr162013257-0.0058726830.9941273
ENST00000321728ENST00000529806PRKCBchr1624135302+RPS2chr162013257-0.007583530.9924165
ENST00000303531ENST00000343262PRKCBchr1624135302+RPS2chr162013257-0.0084442860.99155575
ENST00000303531ENST00000526522PRKCBchr1624135302+RPS2chr162013257-0.0082514310.9917486
ENST00000303531ENST00000530225PRKCBchr1624135302+RPS2chr162013257-0.0057034950.9942965
ENST00000303531ENST00000529806PRKCBchr1624135302+RPS2chr162013257-0.0074578830.99254215

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Fusion Genomic Features for PRKCB-RPS2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PRKCB-RPS2


check button Go to

FGviewer for the breakpoints of chr16:24135302-chr16:2013257

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917158_275355.0674.0DomainC2
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917158_275355.0672.0DomainC2
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917348_356355.0674.0Nucleotide bindingATP
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917348_356355.0672.0Nucleotide bindingATP
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917101_151355.0674.0Zinc fingerPhorbol-ester/DAG-type 2
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+91736_86355.0674.0Zinc fingerPhorbol-ester/DAG-type 1
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917101_151355.0672.0Zinc fingerPhorbol-ester/DAG-type 2
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+91736_86355.0672.0Zinc fingerPhorbol-ester/DAG-type 1
TgeneRPS2chr16:24135302chr16:2013257ENST0000034326227102_16589.0294.0DomainS5 DRBM

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917342_600355.0674.0DomainProtein kinase
HgenePRKCBchr16:24135302chr16:2013257ENST00000303531+917601_671355.0674.0DomainAGC-kinase C-terminal
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917342_600355.0672.0DomainProtein kinase
HgenePRKCBchr16:24135302chr16:2013257ENST00000321728+917601_671355.0672.0DomainAGC-kinase C-terminal
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12158_275058.0DomainC2
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12342_600058.0DomainProtein kinase
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12601_671058.0DomainAGC-kinase C-terminal
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12348_356058.0Nucleotide bindingATP
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+12101_151058.0Zinc fingerPhorbol-ester/DAG-type 2
HgenePRKCBchr16:24135302chr16:2013257ENST00000498058+1236_86058.0Zinc fingerPhorbol-ester/DAG-type 1
TgeneRPS2chr16:24135302chr16:2013257ENST000003432622722_5389.0294.0Compositional biasNote=Arg/Gly-rich


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Fusion Gene Sequence for PRKCB-RPS2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000321728_ENST00000343262_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1901nt_BP=1240nt
GGGCGAGTGACAGCCCCGGCTCCGCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCC
GCCTCCCGCGCCTCCCCGGCCCGCAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGC
TGACCCGGCTGCGGGGCCGCCGCCGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCA
TGAGGTCAAGAACCACAAATTCACCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAA
GCAGGGATTCCAGTGCCAAGTTTGCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGG
TCCAGCCTCCGATGACCCCCGCAGCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCT
GTATGGACTCATCCACCAGGGGATGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGG
CACGGACCACACGGAGCGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAA
CCTTGTACCTATGGACCCCAATGGCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGAC
CAAAACCATCAAATGCTCCCTCAACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGT
AGAGATTTGGGATTGGGATTTGACCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGA
TGGCTGGTTTAAGTTACTGAGCCAGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCG
GCAGAAATTTGAGAGGGCCAAGATCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGG
CAACAGAGACCGGATGAAACTGACCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTT
CTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGC
ATTTGTTGCTATCGGGGACTACAATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCAT
CCTGGCCAAGCTCTCCATCGTCCCCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGGTGACAGG
CCGCTGCGGCTCTGTGCTGGTACGCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCTCATGAT
GGCTGGTATCGATGACTGCTACACCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGATGCCATTTCTAA
GACCTACAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGTCAAGAC
CCACACCAGAGTCTCCGTGCAGCGGACTCAGGCTCCAGCTGTGGCTACAACATAGGGTTTTTATACAAGAAAAATAAAGTGAATTAAGCG

>In-frame_ENST00000321728_ENST00000343262_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=559AA_start in transcript=175_stop in transcript=1854
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV
TGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLV

--------------------------------------------------------------
>In-frame_ENST00000321728_ENST00000526522_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1719nt_BP=1240nt
GGGCGAGTGACAGCCCCGGCTCCGCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCC
GCCTCCCGCGCCTCCCCGGCCCGCAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGC
TGACCCGGCTGCGGGGCCGCCGCCGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCA
TGAGGTCAAGAACCACAAATTCACCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAA
GCAGGGATTCCAGTGCCAAGTTTGCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGG
TCCAGCCTCCGATGACCCCCGCAGCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCT
GTATGGACTCATCCACCAGGGGATGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGG
CACGGACCACACGGAGCGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAA
CCTTGTACCTATGGACCCCAATGGCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGAC
CAAAACCATCAAATGCTCCCTCAACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGT
AGAGATTTGGGATTGGGATTTGACCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGA
TGGCTGGTTTAAGTTACTGAGCCAGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCG
GCAGAAATTTGAGAGGGCCAAGATCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGG
CAACAGAGACCGGATGAAACTGACCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTT
CTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGT
GACAGGCCGCTGCGGCTCTGTGCTGGTACGCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCT
CATGATGGCTGGTATCGATGACTGCTACACCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGATGCCAT
TTCTAAGACCTACAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGT
CAAGACCCACACCAGAGTCTCCGTGCAGCGGACTCAGGCTCCAGCTGTGGCTACAACATAGGGTTTTTATACAAGAAAAATAAAGTGAAT

>In-frame_ENST00000321728_ENST00000526522_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=501AA_start in transcript=175_stop in transcript=1680
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFD

--------------------------------------------------------------
>In-frame_ENST00000321728_ENST00000530225_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1732nt_BP=1240nt
GGGCGAGTGACAGCCCCGGCTCCGCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCC
GCCTCCCGCGCCTCCCCGGCCCGCAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGC
TGACCCGGCTGCGGGGCCGCCGCCGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCA
TGAGGTCAAGAACCACAAATTCACCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAA
GCAGGGATTCCAGTGCCAAGTTTGCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGG
TCCAGCCTCCGATGACCCCCGCAGCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCT
GTATGGACTCATCCACCAGGGGATGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGG
CACGGACCACACGGAGCGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAA
CCTTGTACCTATGGACCCCAATGGCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGAC
CAAAACCATCAAATGCTCCCTCAACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGT
AGAGATTTGGGATTGGGATTTGACCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGA
TGGCTGGTTTAAGTTACTGAGCCAGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCG
GCAGAAATTTGAGAGGGCCAAGATCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGG
CAACAGAGACCGGATGAAACTGACCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTT
CTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGC
ATTTGTTGCTATCGGGGACTACAATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCAT
CCTGGCCAAGCTCTCCATCGTCCCCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGCCAAGGCC
ACCTTTGATGCCATTTCTAAGACCTACAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTC
ACTGACCACCTCGTCAAGACCCACACCAGAGTCTCCGTGCAGCGGACTCAGGCTCCAGCTGTGGCTACAACATAGGGTTTTTATACAAGA

>In-frame_ENST00000321728_ENST00000530225_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=463AA_start in transcript=175_stop in transcript=1566
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKP

--------------------------------------------------------------
>In-frame_ENST00000321728_ENST00000529806_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1869nt_BP=1240nt
GGGCGAGTGACAGCCCCGGCTCCGCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCC
GCCTCCCGCGCCTCCCCGGCCCGCAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGC
TGACCCGGCTGCGGGGCCGCCGCCGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCA
TGAGGTCAAGAACCACAAATTCACCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAA
GCAGGGATTCCAGTGCCAAGTTTGCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGG
TCCAGCCTCCGATGACCCCCGCAGCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCT
GTATGGACTCATCCACCAGGGGATGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGG
CACGGACCACACGGAGCGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAA
CCTTGTACCTATGGACCCCAATGGCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGAC
CAAAACCATCAAATGCTCCCTCAACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGT
AGAGATTTGGGATTGGGATTTGACCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGA
TGGCTGGTTTAAGTTACTGAGCCAGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCG
GCAGAAATTTGAGAGGGCCAAGATCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGG
CAACAGAGACCGGATGAAACTGACCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTT
CTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGC
ATTTGTTGCTATCGGGGACTACAATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCAT
CCTGGCCAAGCTCTCCATCGTCCCCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGGTGACAGG
CCGCTGCGGCTCTGTGCTGGTACGCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCTCATGAT
GGCTGGTATCGATGACTGCTACACCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGGCCACCTTTGATGCCATTTCTAAGACCT
ACAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGTCAAGACCCACA

>In-frame_ENST00000321728_ENST00000529806_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=505AA_start in transcript=175_stop in transcript=1692
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV

--------------------------------------------------------------
>In-frame_ENST00000303531_ENST00000343262_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1878nt_BP=1217nt
GCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCCGCCTCCCGCGCCTCCCCGGCCCG
CAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGCTGACCCGGCTGCGGGGCCGCCGC
CGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCATGAGGTCAAGAACCACAAATTCA
CCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAAGCAGGGATTCCAGTGCCAAGTTT
GCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGGTCCAGCCTCCGATGACCCCCGCA
GCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCTGTATGGACTCATCCACCAGGGGA
TGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGGCACGGACCACACGGAGCGCCGCG
GCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAACCTTGTACCTATGGACCCCAATG
GCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGACCAAAACCATCAAATGCTCCCTCA
ACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGTAGAGATTTGGGATTGGGATTTGA
CCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGATGGCTGGTTTAAGTTACTGAGCC
AGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCGGCAGAAATTTGAGAGGGCCAAGA
TCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGGCAACAGAGACCGGATGAAACTGA
CCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTTCTTCCTGGGGGCCTCTCTCAAGG
ATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGCATTTGTTGCTATCGGGGACTACA
ATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCATCCTGGCCAAGCTCTCCATCGTCC
CCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGGTGACAGGCCGCTGCGGCTCTGTGCTGGTAC
GCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGCTACA
CCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGATGCCATTTCTAAGACCTACAGCTACCTGACCCCCG
ACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGTCAAGACCCACACCAGAGTCTCCGTGCAGC

>In-frame_ENST00000303531_ENST00000343262_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=559AA_start in transcript=152_stop in transcript=1831
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV
TGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLV

--------------------------------------------------------------
>In-frame_ENST00000303531_ENST00000526522_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1696nt_BP=1217nt
GCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCCGCCTCCCGCGCCTCCCCGGCCCG
CAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGCTGACCCGGCTGCGGGGCCGCCGC
CGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCATGAGGTCAAGAACCACAAATTCA
CCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAAGCAGGGATTCCAGTGCCAAGTTT
GCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGGTCCAGCCTCCGATGACCCCCGCA
GCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCTGTATGGACTCATCCACCAGGGGA
TGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGGCACGGACCACACGGAGCGCCGCG
GCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAACCTTGTACCTATGGACCCCAATG
GCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGACCAAAACCATCAAATGCTCCCTCA
ACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGTAGAGATTTGGGATTGGGATTTGA
CCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGATGGCTGGTTTAAGTTACTGAGCC
AGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCGGCAGAAATTTGAGAGGGCCAAGA
TCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGGCAACAGAGACCGGATGAAACTGA
CCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTTCTTCCTGGGGGCCTCTCTCAAGG
ATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGTGACAGGCCGCTGCGGCTCTGTGC
TGGTACGCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCTCATGATGGCTGGTATCGATGACT
GCTACACCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACCTTTGATGCCATTTCTAAGACCTACAGCTACCTGA
CCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGTCAAGACCCACACCAGAGTCTCCG

>In-frame_ENST00000303531_ENST00000526522_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=501AA_start in transcript=152_stop in transcript=1657
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFD

--------------------------------------------------------------
>In-frame_ENST00000303531_ENST00000530225_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1709nt_BP=1217nt
GCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCCGCCTCCCGCGCCTCCCCGGCCCG
CAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGCTGACCCGGCTGCGGGGCCGCCGC
CGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCATGAGGTCAAGAACCACAAATTCA
CCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAAGCAGGGATTCCAGTGCCAAGTTT
GCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGGTCCAGCCTCCGATGACCCCCGCA
GCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCTGTATGGACTCATCCACCAGGGGA
TGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGGCACGGACCACACGGAGCGCCGCG
GCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAACCTTGTACCTATGGACCCCAATG
GCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGACCAAAACCATCAAATGCTCCCTCA
ACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGTAGAGATTTGGGATTGGGATTTGA
CCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGATGGCTGGTTTAAGTTACTGAGCC
AGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCGGCAGAAATTTGAGAGGGCCAAGA
TCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGGCAACAGAGACCGGATGAAACTGA
CCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTTCTTCCTGGGGGCCTCTCTCAAGG
ATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGCATTTGTTGCTATCGGGGACTACA
ATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCATCCTGGCCAAGCTCTCCATCGTCC
CCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGCCAAGGCCACCTTTGATGCCATTTCTAAGAC
CTACAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGTCAAGACCCA

>In-frame_ENST00000303531_ENST00000530225_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=463AA_start in transcript=152_stop in transcript=1543
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKP

--------------------------------------------------------------
>In-frame_ENST00000303531_ENST00000529806_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(transcript)=1846nt_BP=1217nt
GCGCGCCGCGGCCGCCAGAGCCGGCGCAGGGGAAGCGCCCGCGGCCCCGGGTGCAGCAGCGGCCGCCGCCTCCCGCGCCTCCCCGGCCCG
CAGCCCGCGGTCCCGCGGCCCCGGGGCCGGCACCTCTCGGGCTCCGGCTCCCCGCGCGCAAGATGGCTGACCCGGCTGCGGGGCCGCCGC
CGAGCGAGGGCGAGGAGAGCACCGTGCGCTTCGCCCGCAAAGGCGCCCTCCGGCAGAAGAACGTGCATGAGGTCAAGAACCACAAATTCA
CCGCCCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGCTTCGGGAAGCAGGGATTCCAGTGCCAAGTTT
GCTGCTTTGTGGTGCACAAGCGGTGCCATGAATTTGTCACATTCTCCTGCCCTGGCGCTGACAAGGGTCCAGCCTCCGATGACCCCCGCA
GCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCTGTATGGACTCATCCACCAGGGGA
TGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGGCACGGACCACACGGAGCGCCGCG
GCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAACCTTGTACCTATGGACCCCAATG
GCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGACCAAAACCATCAAATGCTCCCTCA
ACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGTAGAGATTTGGGATTGGGATTTGA
CCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGATGGCTGGTTTAAGTTACTGAGCC
AGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCGGCAGAAATTTGAGAGGGCCAAGA
TCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGGCAACAGAGACCGGATGAAACTGA
CCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGAATCAGAGATCATTGATTTCTTCCTGGGGGCCTCTCTCAAGG
ATGAGGTTTTGAAGATTATGCCAGTGCAGAAGCAGACCCGTGCCGGCCAGCGCACCAGGTTCAAGGCATTTGTTGCTATCGGGGACTACA
ATGGCCACGTCGGTCTGGGTGTTAAGTGCTCCAAGGAGGTGGCCACCGCCATCCGTGGGGCCATCATCCTGGCCAAGCTCTCCATCGTCC
CCGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGGTGACAGGCCGCTGCGGCTCTGTGCTGGTAC
GCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCTAAGAAGCTGCTCATGATGGCTGGTATCGATGACTGCTACA
CCTCAGCCCGGGGCTGCACTGCCACCCTGGGCAACTTCGGCCACCTTTGATGCCATTTCTAAGACCTACAGCTACCTGACCCCCGACCTC
TGGAAGGAGACTGTATTCACCAAGTCTCCCTATCAGGAGTTCACTGACCACCTCGTCAAGACCCACACCAGAGTCTCCGTGCAGCGGACT

>In-frame_ENST00000303531_ENST00000529806_TCGA-KK-A8I7_PRKCB_chr16_24135302_+_RPS2_chr16_2013257_length(amino acids)=505AA_start in transcript=152_stop in transcript=1669
MADPAAGPPPSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGAD
KGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRDVLIVLVRDA
KNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAS
VDGWFKLLSQEEGEYFNVPVPPEGSEANEELRQKFERAKISQGTKVPEEKTTNTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKESEII
DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKV

--------------------------------------------------------------

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Fusion Gene PPI Analysis for PRKCB-RPS2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PRKCB-RPS2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PRKCB-RPS2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePRKCBC0004352Autistic Disorder1CTD_human
HgenePRKCBC0009402Colorectal Carcinoma1CTD_human
HgenePRKCBC0009404Colorectal Neoplasms1CTD_human
HgenePRKCBC0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human
HgenePRKCBC0018800Cardiomegaly1CTD_human
HgenePRKCBC0020456Hyperglycemia1CTD_human
HgenePRKCBC0023493Adult T-Cell Lymphoma/Leukemia1CTD_human
HgenePRKCBC0023893Liver Cirrhosis, Experimental1CTD_human
HgenePRKCBC0024623Malignant neoplasm of stomach1CTD_human
HgenePRKCBC0025281Meniere Disease1GENOMICS_ENGLAND
HgenePRKCBC0038356Stomach Neoplasms1CTD_human
HgenePRKCBC0041696Unipolar Depression1PSYGENET
HgenePRKCBC1269683Major Depressive Disorder1PSYGENET
HgenePRKCBC1383860Cardiac Hypertrophy1CTD_human
HgenePRKCBC1708349Hereditary Diffuse Gastric Cancer1CTD_human
HgenePRKCBC1855520Hyperglycemia, Postprandial1CTD_human
TgeneRPS2C0003129Anoxemia1CTD_human
TgeneRPS2C0003130Anoxia1CTD_human
TgeneRPS2C0004238Atrial Fibrillation1CTD_human
TgeneRPS2C0235480Paroxysmal atrial fibrillation1CTD_human
TgeneRPS2C0242184Hypoxia1CTD_human
TgeneRPS2C0700292Hypoxemia1CTD_human
TgeneRPS2C2585653Persistent atrial fibrillation1CTD_human
TgeneRPS2C3468561familial atrial fibrillation1CTD_human