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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PTPRF-TPD52 (FusionGDB2 ID:69954) |
Fusion Gene Summary for PTPRF-TPD52 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PTPRF-TPD52 | Fusion gene ID: 69954 | Hgene | Tgene | Gene symbol | PTPRF | TPD52 | Gene ID | 5792 | 7163 |
Gene name | protein tyrosine phosphatase receptor type F | tumor protein D52 | |
Synonyms | BNAH2|LAR | D52|N8L|PC-1|PrLZ|hD52 | |
Cytomap | 1p34.2 | 8q21.13 | |
Type of gene | protein-coding | protein-coding | |
Description | receptor-type tyrosine-protein phosphatase FLCA-homologleukocyte antigen-related (LAR) PTP receptorleukocyte antigen-related tyrosine phosphataseleukocyte common antigen relatedprotein tyrosine phosphatase, receptor type, F polypeptidereceptor-linke | tumor protein D52prostate and colon associated proteinprostate leucine zipperprotein N8 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000359947, ENST00000438120, ENST00000372413, ENST00000372414, ENST00000422171, ENST00000496447, | ENST00000537855, ENST00000379096, ENST00000518937, ENST00000519303, ENST00000517427, ENST00000520527, ENST00000448733, ENST00000379097, ENST00000523395, | |
Fusion gene scores | * DoF score | 22 X 15 X 12=3960 | 9 X 6 X 7=378 |
# samples | 24 | 10 | |
** MAII score | log2(24/3960*10)=-4.04439411935845 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/378*10)=-1.91838623444635 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PTPRF [Title/Abstract] AND TPD52 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PTPRF(44054671)-TPD52(80976828), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PTPRF | GO:0099560 | synaptic membrane adhesion | 26321637 |
Fusion gene breakpoints across PTPRF (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TPD52 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | ESCA | TCGA-LN-A4A9 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
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Fusion Gene ORF analysis for PTPRF-TPD52 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000359947 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000359947 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000359947 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000359947 | ENST00000519303 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000359947 | ENST00000517427 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000359947 | ENST00000520527 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000359947 | ENST00000448733 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000359947 | ENST00000379097 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-intron | ENST00000359947 | ENST00000523395 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000438120 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000438120 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000438120 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000438120 | ENST00000519303 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000438120 | ENST00000517427 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000438120 | ENST00000520527 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000438120 | ENST00000448733 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000438120 | ENST00000379097 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-intron | ENST00000438120 | ENST00000523395 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000372413 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000372413 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000372413 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372413 | ENST00000519303 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372413 | ENST00000517427 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372413 | ENST00000520527 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372413 | ENST00000448733 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372413 | ENST00000379097 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-intron | ENST00000372413 | ENST00000523395 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000372414 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000372414 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
In-frame | ENST00000372414 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372414 | ENST00000519303 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372414 | ENST00000517427 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372414 | ENST00000520527 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372414 | ENST00000448733 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-5UTR | ENST00000372414 | ENST00000379097 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
5CDS-intron | ENST00000372414 | ENST00000523395 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-3CDS | ENST00000422171 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-3CDS | ENST00000422171 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-3CDS | ENST00000422171 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000422171 | ENST00000519303 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000422171 | ENST00000517427 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000422171 | ENST00000520527 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000422171 | ENST00000448733 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000422171 | ENST00000379097 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-intron | ENST00000422171 | ENST00000523395 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-3CDS | ENST00000496447 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-3CDS | ENST00000496447 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-3CDS | ENST00000496447 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000496447 | ENST00000519303 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000496447 | ENST00000517427 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000496447 | ENST00000520527 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000496447 | ENST00000448733 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-5UTR | ENST00000496447 | ENST00000379097 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
intron-intron | ENST00000496447 | ENST00000523395 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000359947 | PTPRF | chr1 | 44054671 | + | ENST00000537855 | TPD52 | chr8 | 80976828 | - | 1987 | 1289 | 310 | 1986 | 559 |
ENST00000359947 | PTPRF | chr1 | 44054671 | + | ENST00000379096 | TPD52 | chr8 | 80976828 | - | 5073 | 1289 | 310 | 1824 | 504 |
ENST00000359947 | PTPRF | chr1 | 44054671 | + | ENST00000518937 | TPD52 | chr8 | 80976828 | - | 3910 | 1289 | 310 | 1893 | 527 |
ENST00000438120 | PTPRF | chr1 | 44054671 | + | ENST00000537855 | TPD52 | chr8 | 80976828 | - | 1973 | 1275 | 296 | 1972 | 559 |
ENST00000438120 | PTPRF | chr1 | 44054671 | + | ENST00000379096 | TPD52 | chr8 | 80976828 | - | 5059 | 1275 | 296 | 1810 | 504 |
ENST00000438120 | PTPRF | chr1 | 44054671 | + | ENST00000518937 | TPD52 | chr8 | 80976828 | - | 3896 | 1275 | 296 | 1879 | 527 |
ENST00000372413 | PTPRF | chr1 | 44054671 | + | ENST00000537855 | TPD52 | chr8 | 80976828 | - | 1693 | 995 | 16 | 1692 | 559 |
ENST00000372413 | PTPRF | chr1 | 44054671 | + | ENST00000379096 | TPD52 | chr8 | 80976828 | - | 4779 | 995 | 16 | 1530 | 504 |
ENST00000372413 | PTPRF | chr1 | 44054671 | + | ENST00000518937 | TPD52 | chr8 | 80976828 | - | 3616 | 995 | 16 | 1599 | 527 |
ENST00000372414 | PTPRF | chr1 | 44054671 | + | ENST00000537855 | TPD52 | chr8 | 80976828 | - | 1693 | 995 | 16 | 1692 | 559 |
ENST00000372414 | PTPRF | chr1 | 44054671 | + | ENST00000379096 | TPD52 | chr8 | 80976828 | - | 4779 | 995 | 16 | 1530 | 504 |
ENST00000372414 | PTPRF | chr1 | 44054671 | + | ENST00000518937 | TPD52 | chr8 | 80976828 | - | 3616 | 995 | 16 | 1599 | 527 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000359947 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.01631824 | 0.9836818 |
ENST00000359947 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.000652206 | 0.99934775 |
ENST00000359947 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.001250741 | 0.99874926 |
ENST00000438120 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.01613331 | 0.9838667 |
ENST00000438120 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.000643543 | 0.99935645 |
ENST00000438120 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.001241417 | 0.99875855 |
ENST00000372413 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.010128218 | 0.9898718 |
ENST00000372413 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.000471788 | 0.99952817 |
ENST00000372413 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.000769251 | 0.99923074 |
ENST00000372414 | ENST00000537855 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.010128218 | 0.9898718 |
ENST00000372414 | ENST00000379096 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.000471788 | 0.99952817 |
ENST00000372414 | ENST00000518937 | PTPRF | chr1 | 44054671 | + | TPD52 | chr8 | 80976828 | - | 0.000769251 | 0.99923074 |
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Fusion Genomic Features for PTPRF-TPD52 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PTPRF-TPD52 |
Go to FGviewer for the breakpoints of chr1:44054671-chr8:80976828 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 135_224 | 316.3333333333333 | 1908.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 232_314 | 316.3333333333333 | 1908.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 33_123 | 316.3333333333333 | 1908.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 135_224 | 316.3333333333333 | 1899.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 232_314 | 316.3333333333333 | 1899.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 33_123 | 316.3333333333333 | 1899.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 135_224 | 316.3333333333333 | 1908.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 232_314 | 316.3333333333333 | 1908.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 33_123 | 316.3333333333333 | 1908.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 135_224 | 316.3333333333333 | 1899.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 232_314 | 316.3333333333333 | 1899.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 33_123 | 316.3333333333333 | 1899.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 68_77 | 316.3333333333333 | 1908.0 | Region | Heparin-binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 68_77 | 316.3333333333333 | 1899.0 | Region | Heparin-binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 68_77 | 316.3333333333333 | 1908.0 | Region | Heparin-binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 68_77 | 316.3333333333333 | 1899.0 | Region | Heparin-binding |
Tgene | TPD52 | chr1:44054671 | chr8:80976828 | ENST00000379096 | 0 | 6 | 62_114 | 6.333333333333333 | 185.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPD52 | chr1:44054671 | chr8:80976828 | ENST00000379097 | 0 | 6 | 62_114 | 46.333333333333336 | 225.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPD52 | chr1:44054671 | chr8:80976828 | ENST00000448733 | 0 | 7 | 62_114 | 46.333333333333336 | 239.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPD52 | chr1:44054671 | chr8:80976828 | ENST00000517427 | 0 | 7 | 62_114 | 46.333333333333336 | 234.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPD52 | chr1:44054671 | chr8:80976828 | ENST00000518937 | 0 | 8 | 62_114 | 6.333333333333333 | 208.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPD52 | chr1:44054671 | chr8:80976828 | ENST00000520527 | 0 | 8 | 62_114 | 46.333333333333336 | 248.0 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 1014_1098 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 8 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 1352_1607 | 316.3333333333333 | 1908.0 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 1639_1898 | 316.3333333333333 | 1908.0 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 321_411 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 416_510 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 514_604 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 609_706 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 711_819 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 5 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 820_914 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 6 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 918_1010 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 7 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 1014_1098 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 8 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 1352_1607 | 316.3333333333333 | 1899.0 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 1639_1898 | 316.3333333333333 | 1899.0 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 321_411 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 416_510 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 514_604 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 609_706 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 711_819 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 5 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 820_914 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 6 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 918_1010 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 7 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 1014_1098 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 8 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 1352_1607 | 316.3333333333333 | 1908.0 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 1639_1898 | 316.3333333333333 | 1908.0 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 321_411 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 416_510 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 514_604 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 609_706 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 711_819 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 5 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 820_914 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 6 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 918_1010 | 316.3333333333333 | 1908.0 | Domain | Fibronectin type-III 7 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 1014_1098 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 8 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 1352_1607 | 316.3333333333333 | 1899.0 | Domain | Tyrosine-protein phosphatase 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 1639_1898 | 316.3333333333333 | 1899.0 | Domain | Tyrosine-protein phosphatase 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 321_411 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 1 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 416_510 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 2 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 514_604 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 3 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 609_706 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 4 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 711_819 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 5 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 820_914 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 6 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 918_1010 | 316.3333333333333 | 1899.0 | Domain | Fibronectin type-III 7 |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 1548_1554 | 316.3333333333333 | 1908.0 | Region | Substrate binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 1548_1554 | 316.3333333333333 | 1899.0 | Region | Substrate binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 1548_1554 | 316.3333333333333 | 1908.0 | Region | Substrate binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 1548_1554 | 316.3333333333333 | 1899.0 | Region | Substrate binding |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 1285_1907 | 316.3333333333333 | 1908.0 | Topological domain | Cytoplasmic |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 30_1263 | 316.3333333333333 | 1908.0 | Topological domain | Extracellular |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 1285_1907 | 316.3333333333333 | 1899.0 | Topological domain | Cytoplasmic |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 30_1263 | 316.3333333333333 | 1899.0 | Topological domain | Extracellular |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 1285_1907 | 316.3333333333333 | 1908.0 | Topological domain | Cytoplasmic |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 30_1263 | 316.3333333333333 | 1908.0 | Topological domain | Extracellular |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 1285_1907 | 316.3333333333333 | 1899.0 | Topological domain | Cytoplasmic |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 30_1263 | 316.3333333333333 | 1899.0 | Topological domain | Extracellular |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000359947 | + | 8 | 34 | 1264_1284 | 316.3333333333333 | 1908.0 | Transmembrane | Helical |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372413 | + | 6 | 31 | 1264_1284 | 316.3333333333333 | 1899.0 | Transmembrane | Helical |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000372414 | + | 6 | 32 | 1264_1284 | 316.3333333333333 | 1908.0 | Transmembrane | Helical |
Hgene | PTPRF | chr1:44054671 | chr8:80976828 | ENST00000438120 | + | 8 | 33 | 1264_1284 | 316.3333333333333 | 1899.0 | Transmembrane | Helical |
Top |
Fusion Gene Sequence for PTPRF-TPD52 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000359947_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=1987nt_BP=1289nt CGGGAGCGGCGGGAGCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTC CGGCTCCAGCTCGGGTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCG GGGGGACATGCGGACCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTG ACCGGGGTGAAGAAGCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCC AGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAA AGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGAT GAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCG GGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGA GGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGC CGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCT GCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTA CTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGG CAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGA GATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGAT CGAGGCCACAGCCCAGGTCACAGTGAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGC CACAGAGACCCTCTCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTT AGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTG GCAAGACGTGACAGCAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGT TGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGGGTTC TCCAAAAAATGTGGAATCCTTTGCATCTATGCTGAGACATTCTCCTCTTACACAGATGGGACCTGCAAAGGATAAACTGGTCATTGGACG GATCTTTCATATTGTGGAGAATGATCTGTACATAGATTTTGGTGGAAAGTTTCATTGTGTATGTAGAAGACCAGAAGTGGATGGAGAGAG TCCCATTTCGTGGTATGCTGTTTGGAGGAGATTTTCACAAGTGATGATAACCTGTTTTTCTTCCAACTCTGACTTTGGAAAACATCGTAA >In-frame_ENST00000359947_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=559AA_start in transcript=310_stop in transcript=1986 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN SPTFKSFEEKVENLKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGESPISWYAVWRRFSQ -------------------------------------------------------------- >In-frame_ENST00000359947_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=5073nt_BP=1289nt CGGGAGCGGCGGGAGCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTC CGGCTCCAGCTCGGGTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCG GGGGGACATGCGGACCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTG ACCGGGGTGAAGAAGCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCC AGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAA AGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGAT GAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCG GGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGA GGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGC CGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCT GCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTA CTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGG CAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGA GATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGAT CGAGGCCACAGCCCAGGTCACAGTGAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGC CACAGAGACCCTCTCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTT AGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTG GCAAGACGTGACAGCAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGT TGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAA AGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCC AGAAAAGACACAGGAGAGCCTGTGAGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTC AACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATG AAAATATCTTCACCTCTATTCTTGGGAAACACCCTTTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATA GTAAATGGGGACATTCACTATAATGATCTAAGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAAT GCCAGTTTGACCTTTGTCTTCTATAATATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTT AAATATTCTGAATCCTGGTAATTAAAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAAT AAGCATTGTTTTGGTATAAGGTACATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAA GTAACAATATGTAATCAAACTTCTAGGTGACTTGAGAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAG TGTATTGTTTATTATACCACTTATATCAACTTATTTTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACAC TGTATGTTCAGTAGGTTGAACTATGAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGAC AATATCAATCACATTAGGGGAACCATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATA TAACTTGAAAATTTTTTATACTGAGGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGT TTTCAATGTGTTGGAAACTGTAAAATGATACTGTAGAACCTGTCTCCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTC TAGACATATTTGCATAGAGGCCAAGGTATTCTATTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATG GCCTACAATGTTGTATTTGTTATTTATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTA AAGCATTTTTTAAAAGCATGGCTAGATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTAT AAAATAACATGCTGCCATTCTTGATTGCTAGAGTTTTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTT AATAAATTCCATCTATCAGTAGTATAGGTCTCAATATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAG TCTATGCTTAAAAAAAAAAAATTTTTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTA AGGCACAGGCTGTTGAAGCATTTTCTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAA TTATTTTTTCTATGAACTAGTCTACTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAAC TTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATTTCTTTAGATGAGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGT GATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGATGAAGGTGGGTATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTA GACATCTACCTATACTTAATCTAAGAAACAAAGTAATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGG ATTTAGAAAAAAACATGAATTTAGAAATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATATTTAAAGAATGAGA AACATAGTAATTAGTAGAAATGCCAGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTAAGAAAATAGCAAGAGTGTGAAATCTCAGAT ACTTATGAAATCTCACAGATGTAAGGACTCAAGTGTAGAAGAAAATATCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTTTGTGG GAAATAGGGCAAGAATTCTTATGCTTATGAGAGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTATCACCTTAGCAACTT AGAATAGTTTGAAATAGAAAAAAAGTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTCTATTTTTTGTATAGTATTGGAAAAT AAAAATGCTATAATTTGGGTATGGGTTCTTTTGTATACATTACCTGCCCATTGAGGAAAGGGGCAAGTCCATTATGCAACTTCTCTCCAA ACCCTTCATATTCTGGATATGATACTTAAAGAGCCATGAGCAGCTACATTCTGCCTATCAGAAGGCATTTATTAAATGACTGCTTGCTGA AGATGTGTCCAAAGAGATCCTACATTAAGGTCATTTGTCAGAATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGT CAAGGAATCCTACTGCCTTAGCTTCCCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAG ATGAAGAAATCACATTTTTGCCCATAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTTTCATTAGATT AGAGAGACCCTGTGTGGGCCACAGTTAATATAAACCATTATCACTTTTAAGTAAACCTGCACATCTTAGATTTCATAATTTCCTTATTGT TCTGACTCAAAATGAACTAAGAGCTTTTCACTTTTTGTTTGTAAGTTCTCAGAGAGTCGGGTCTGCAAGTGCTTTTGCCTGCCAGGATTT >In-frame_ENST00000359947_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=504AA_start in transcript=310_stop in transcript=1824 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN -------------------------------------------------------------- >In-frame_ENST00000359947_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=3910nt_BP=1289nt CGGGAGCGGCGGGAGCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTC CGGCTCCAGCTCGGGTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCG GGGGGACATGCGGACCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTG ACCGGGGTGAAGAAGCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCC AGGGAGGACGATGGTGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAA AGTCCCTGAGGACCAGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGAT GAAGAAGGGGAAGAAAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCG GGTGCAGCGAGATGAAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGA GGAACAGCTGCCCCCTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGC CGCAGGCGGAAATCCAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCT GCGTTCAGGTGCCTTGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTA CTCAGCCCCTGCGAACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGG CAGCGTGAACCTGACATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGA GATGCCAGTTGGCCGCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGAT CGAGGCCACAGCCCAGGTCACAGTGAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGC CACAGAGACCCTCTCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTT AGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTG GCAAGACGTGACAGCAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGT TGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAAATTGCAAGCCTTTTCACATTCCTTTAGTATACGTTCCATTCAGCATTCAATTAG CATGCCTGCTATGAGAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGC TGGTGGTGATTTTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCT GTGAGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTT CTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACCTCTATTC TTGGGAAACACCCTTTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTAT AATGATCTAAGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTC TATAATATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAA TTAAAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGG TACATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACT TCTAGGTGACTTGAGAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACT TATATCAACTTATTTTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAAC TATGAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACATTAGGGGA ACCATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTTTTTATAC TGAGGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGT AAAATGATACTGTAGAACCTGTCTCCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGC CAAGGTATTCTATTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTT ATTTATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGG CTAGATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCT TGATTGCTAGAGTTTTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTA GTATAGGTCTCAATATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAA TTTTTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTTGAAGCAT TTTCTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATGAACTAGT CTACTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGA GTAAAGTGGCAATTTCTTTAGATGAGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAG >In-frame_ENST00000359947_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=527AA_start in transcript=310_stop in transcript=1893 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKL -------------------------------------------------------------- >In-frame_ENST00000438120_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=1973nt_BP=1275nt GCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCAGCTCGG GTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCGGGGGGACATGCGGA CCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTGACCGGGGTGAAGAA GCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGG TGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACC AGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGA AAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATG AAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCC CTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATC CAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCT TGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGA ACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGA CATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCC GCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCC AGGTCACAGTGAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCT CGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGA AGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAG CAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCA CCAAAAAGCTGGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGGGTTCTCCAAAAAATGTGG AATCCTTTGCATCTATGCTGAGACATTCTCCTCTTACACAGATGGGACCTGCAAAGGATAAACTGGTCATTGGACGGATCTTTCATATTG TGGAGAATGATCTGTACATAGATTTTGGTGGAAAGTTTCATTGTGTATGTAGAAGACCAGAAGTGGATGGAGAGAGTCCCATTTCGTGGT >In-frame_ENST00000438120_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=559AA_start in transcript=296_stop in transcript=1972 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN SPTFKSFEEKVENLKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGESPISWYAVWRRFSQ -------------------------------------------------------------- >In-frame_ENST00000438120_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=5059nt_BP=1275nt GCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCAGCTCGG GTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCGGGGGGACATGCGGA CCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTGACCGGGGTGAAGAA GCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGG TGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACC AGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGA AAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATG AAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCC CTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATC CAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCT TGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGA ACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGA CATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCC GCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCC AGGTCACAGTGAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCT CGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGA AGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAG CAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCA CCAAAAAGCTGGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCA AGCCTGCTGGTGGTGATTTTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGG AGAGCCTGTGAGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCA TGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACC TCTATTCTTGGGAAACACCCTTTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACAT TCACTATAATGATCTAAGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTT TGTCTTCTATAATATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATC CTGGTAATTAAAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGG TATAAGGTACATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAA TCAAACTTCTAGGTGACTTGAGAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTA TACCACTTATATCAACTTATTTTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAG GTTGAACTATGAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACAT TAGGGGAACCATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTT TTTATACTGAGGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGG AAACTGTAAAATGATACTGTAGAACCTGTCTCCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCA TAGAGGCCAAGGTATTCTATTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGT ATTTGTTATTTATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAA AGCATGGCTAGATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTG CCATTCTTGATTGCTAGAGTTTTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCT ATCAGTAGTATAGGTCTCAATATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAA AAAAAAATTTTTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTT GAAGCATTTTCTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATG AACTAGTCTACTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCA AAATGGAGTAAAGTGGCAATTTCTTTAGATGAGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGG TGGCAAGTGGGGTGAGTGGATGAAGGTGGGTATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTAGACATCTACCTATA CTTAATCTAAGAAACAAAGTAATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGGATTTAGAAAAAAAC ATGAATTTAGAAATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATATTTAAAGAATGAGAAACATAGTAATTAG TAGAAATGCCAGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTAAGAAAATAGCAAGAGTGTGAAATCTCAGATACTTATGAAATCTC ACAGATGTAAGGACTCAAGTGTAGAAGAAAATATCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTTTGTGGGAAATAGGGCAAGA ATTCTTATGCTTATGAGAGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTATCACCTTAGCAACTTAGAATAGTTTGAAA TAGAAAAAAAGTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTCTATTTTTTGTATAGTATTGGAAAATAAAAATGCTATAAT TTGGGTATGGGTTCTTTTGTATACATTACCTGCCCATTGAGGAAAGGGGCAAGTCCATTATGCAACTTCTCTCCAAACCCTTCATATTCT GGATATGATACTTAAAGAGCCATGAGCAGCTACATTCTGCCTATCAGAAGGCATTTATTAAATGACTGCTTGCTGAAGATGTGTCCAAAG AGATCCTACATTAAGGTCATTTGTCAGAATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGTCAAGGAATCCTACT GCCTTAGCTTCCCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAGATGAAGAAATCACA TTTTTGCCCATAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTTTCATTAGATTAGAGAGACCCTGTG TGGGCCACAGTTAATATAAACCATTATCACTTTTAAGTAAACCTGCACATCTTAGATTTCATAATTTCCTTATTGTTCTGACTCAAAATG AACTAAGAGCTTTTCACTTTTTGTTTGTAAGTTCTCAGAGAGTCGGGTCTGCAAGTGCTTTTGCCTGCCAGGATTTTGTACTCAAATAAA >In-frame_ENST00000438120_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=504AA_start in transcript=296_stop in transcript=1810 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN -------------------------------------------------------------- >In-frame_ENST00000438120_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=3896nt_BP=1275nt GCGGTGGCGGCGGCAGAGGCGGCGGCTCCAGCTTCGGCTCCGGCTCGGGCTCGGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCAGCTCGG GTGGCGGTGGCGGGAGCGGGACCAGGTGGAGGCGGCGGCGGCAGAGGAGTGGGAGCAGCGGCCCTAGCGGCTTGCGGGGGGACATGCGGA CCGACGGCCCCTGGATAGGCGGAAGGAGTGGAGGCCCTGGTGCCCGGCCCTTGGTGCTGAGTATCCAGCAAGAGTGACCGGGGTGAAGAA GCAAAGACTCGGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGG TGCCCCTTGTGCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACC AGACTGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGA AAGTCAGCTCCCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATG AAGCCATCTATGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCC CTGGGTTCCCTTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATC CAGACCCTGAGATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCT TGCAGATAGAGAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGA ACCTGTATGTGCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGA CATGCGTGGCAGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCC GCAACGTCCTGGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCC AGGTCACAGTGAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCT CGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGA AGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAG CAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCA CCAAAAAGCTGGAAGATGTAAAATTGCAAGCCTTTTCACATTCCTTTAGTATACGTTCCATTCAGCATTCAATTAGCATGCCTGCTATGA GAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTG GAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTGAGATTCCTACC TTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTACCAGATGTGCT TTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACCTCTATTCTTGGGAAACACCCT TTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAATGATCTAAGAAG CTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTATAATATTTCCTT TTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAATTAAAAGTTTGGGT GTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGGTACATATTTTGGTT GAAGACACCAGACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCTAGGTGACTTGA GAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTATATCAACTTATT TTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTATGAACACTGTCA TCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACATTAGGGGAACCATTGTTGTCTT CACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTTTTTATACTGAGGGGTTGGTGA TAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAAATGATACTGTA GAACCTGTCTCCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAAGGTATTCTATT CTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTTATTTATTAAATTGT GATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGGCTAGATTTACTTCA GTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGATTGCTAGAGTT TTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTATAGGTCTCAAT ATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTTTTTTTTAACCA TCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTTGAAGCATTTTCTCAGAGGAGT GGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATGAACTAGTCTACTTCTTAAAAT TCAAACATATTCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATT TCTTTAGATGAGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGAT >In-frame_ENST00000438120_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=527AA_start in transcript=296_stop in transcript=1879 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKL -------------------------------------------------------------- >In-frame_ENST00000372413_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=1693nt_BP=995nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGA GCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGC AGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC TTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCT GGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGGGTTCTCCAAAAAATGTGGAATCCTTTGC ATCTATGCTGAGACATTCTCCTCTTACACAGATGGGACCTGCAAAGGATAAACTGGTCATTGGACGGATCTTTCATATTGTGGAGAATGA TCTGTACATAGATTTTGGTGGAAAGTTTCATTGTGTATGTAGAAGACCAGAAGTGGATGGAGAGAGTCCCATTTCGTGGTATGCTGTTTG >In-frame_ENST00000372413_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=559AA_start in transcript=16_stop in transcript=1692 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN SPTFKSFEEKVENLKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGESPISWYAVWRRFSQ -------------------------------------------------------------- >In-frame_ENST00000372413_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=4779nt_BP=995nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGA GCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGC AGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC TTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCT GGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGG TGGTGATTTTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTG AGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTA CCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACCTCTATTCTTG GGAAACACCCTTTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAAT GATCTAAGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTAT AATATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAATTA AAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGGTAC ATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCT AGGTGACTTGAGAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTAT ATCAACTTATTTTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTAT GAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACATTAGGGGAACC ATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTTTTTATACTGA GGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAA ATGATACTGTAGAACCTGTCTCCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAA GGTATTCTATTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTTATT TATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGGCTA GATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGA TTGCTAGAGTTTTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTA TAGGTCTCAATATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTT TTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTTGAAGCATTTT CTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATGAACTAGTCTA CTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTA AAGTGGCAATTTCTTTAGATGAGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGG GGTGAGTGGATGAAGGTGGGTATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTAGACATCTACCTATACTTAATCTAA GAAACAAAGTAATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGGATTTAGAAAAAAACATGAATTTAG AAATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATATTTAAAGAATGAGAAACATAGTAATTAGTAGAAATGCC AGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTAAGAAAATAGCAAGAGTGTGAAATCTCAGATACTTATGAAATCTCACAGATGTAA GGACTCAAGTGTAGAAGAAAATATCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTTTGTGGGAAATAGGGCAAGAATTCTTATGC TTATGAGAGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTATCACCTTAGCAACTTAGAATAGTTTGAAATAGAAAAAAA GTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTCTATTTTTTGTATAGTATTGGAAAATAAAAATGCTATAATTTGGGTATGG GTTCTTTTGTATACATTACCTGCCCATTGAGGAAAGGGGCAAGTCCATTATGCAACTTCTCTCCAAACCCTTCATATTCTGGATATGATA CTTAAAGAGCCATGAGCAGCTACATTCTGCCTATCAGAAGGCATTTATTAAATGACTGCTTGCTGAAGATGTGTCCAAAGAGATCCTACA TTAAGGTCATTTGTCAGAATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGTCAAGGAATCCTACTGCCTTAGCTT CCCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAGATGAAGAAATCACATTTTTGCCCA TAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTTTCATTAGATTAGAGAGACCCTGTGTGGGCCACAG TTAATATAAACCATTATCACTTTTAAGTAAACCTGCACATCTTAGATTTCATAATTTCCTTATTGTTCTGACTCAAAATGAACTAAGAGC TTTTCACTTTTTGTTTGTAAGTTCTCAGAGAGTCGGGTCTGCAAGTGCTTTTGCCTGCCAGGATTTTGTACTCAAATAAATGCTATTTGG >In-frame_ENST00000372413_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=504AA_start in transcript=16_stop in transcript=1530 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN -------------------------------------------------------------- >In-frame_ENST00000372413_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=3616nt_BP=995nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGA GCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGC AGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC TTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCT GGAAGATGTAAAATTGCAAGCCTTTTCACATTCCTTTAGTATACGTTCCATTCAGCATTCAATTAGCATGCCTGCTATGAGAAACTCCCC AACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTGGAGAAGTCTT GAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTGAGATTCCTACCTTTGTTCTGC TACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGC TTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACCTCTATTCTTGGGAAACACCCTTTAGTGTACA TTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAATGATCTAAGAAGCTACAGATTG TCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTATAATATTTCCTTTTTTTCCCCT CTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAATTAAAAGTTTGGGTGTATTTTCTT TACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGGTACATATTTTGGTTGAAGACACCA GACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCTAGGTGACTTGAGAGTGGAACC TCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTATATCAACTTATTTTTCACCAGG TTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTATGAACACTGTCATCAATGTTCA GTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACATTAGGGGAACCATTGTTGTCTTCACTTAATCC ATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTTTTTATACTGAGGGGTTGGTGATAACTCTTGA GGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAAATGATACTGTAGAACCTGTCT CCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAAGGTATTCTATTCTAATAACTG CTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTTATTTATTAAATTGTGATTGTTTTA TTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGGCTAGATTTACTTCAGTATAAATTA TCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGATTGCTAGAGTTTTTGTTAGTA CTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTATAGGTCTCAATATTTATTATG AGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTTTTTTTTAACCATCCTTAAATT ATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTTGAAGCATTTTCTCAGAGGAGTGGATCTGTAG AAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATGAACTAGTCTACTTCTTAAAATTCAAACATAT TCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATTTCTTTAGATG AGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGATGAAGGTGGGT >In-frame_ENST00000372413_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=527AA_start in transcript=16_stop in transcript=1599 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKL -------------------------------------------------------------- >In-frame_ENST00000372414_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=1693nt_BP=995nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGA GCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGC AGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC TTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCT GGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGGGTTCTCCAAAAAATGTGGAATCCTTTGC ATCTATGCTGAGACATTCTCCTCTTACACAGATGGGACCTGCAAAGGATAAACTGGTCATTGGACGGATCTTTCATATTGTGGAGAATGA TCTGTACATAGATTTTGGTGGAAAGTTTCATTGTGTATGTAGAAGACCAGAAGTGGATGGAGAGAGTCCCATTTCGTGGTATGCTGTTTG >In-frame_ENST00000372414_ENST00000537855_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=559AA_start in transcript=16_stop in transcript=1692 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN SPTFKSFEEKVENLKGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGESPISWYAVWRRFSQ -------------------------------------------------------------- >In-frame_ENST00000372414_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=4779nt_BP=995nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGA GCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGC AGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC TTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCT GGAAGATGTAAAAAACTCCCCAACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGG TGGTGATTTTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTG AGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTA CCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACCTCTATTCTTG GGAAACACCCTTTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAAT GATCTAAGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTAT AATATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAATTA AAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGGTAC ATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCT AGGTGACTTGAGAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTAT ATCAACTTATTTTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTAT GAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACATTAGGGGAACC ATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTTTTTATACTGA GGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAA ATGATACTGTAGAACCTGTCTCCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAA GGTATTCTATTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTTATT TATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGGCTA GATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGA TTGCTAGAGTTTTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTA TAGGTCTCAATATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTT TTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTTGAAGCATTTT CTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATGAACTAGTCTA CTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTA AAGTGGCAATTTCTTTAGATGAGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGG GGTGAGTGGATGAAGGTGGGTATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTAGACATCTACCTATACTTAATCTAA GAAACAAAGTAATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGGATTTAGAAAAAAACATGAATTTAG AAATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATATTTAAAGAATGAGAAACATAGTAATTAGTAGAAATGCC AGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTAAGAAAATAGCAAGAGTGTGAAATCTCAGATACTTATGAAATCTCACAGATGTAA GGACTCAAGTGTAGAAGAAAATATCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTTTGTGGGAAATAGGGCAAGAATTCTTATGC TTATGAGAGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTATCACCTTAGCAACTTAGAATAGTTTGAAATAGAAAAAAA GTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTCTATTTTTTGTATAGTATTGGAAAATAAAAATGCTATAATTTGGGTATGG GTTCTTTTGTATACATTACCTGCCCATTGAGGAAAGGGGCAAGTCCATTATGCAACTTCTCTCCAAACCCTTCATATTCTGGATATGATA CTTAAAGAGCCATGAGCAGCTACATTCTGCCTATCAGAAGGCATTTATTAAATGACTGCTTGCTGAAGATGTGTCCAAAGAGATCCTACA TTAAGGTCATTTGTCAGAATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGTCAAGGAATCCTACTGCCTTAGCTT CCCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAGATGAAGAAATCACATTTTTGCCCA TAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTTTCATTAGATTAGAGAGACCCTGTGTGGGCCACAG TTAATATAAACCATTATCACTTTTAAGTAAACCTGCACATCTTAGATTTCATAATTTCCTTATTGTTCTGACTCAAAATGAACTAAGAGC TTTTCACTTTTTGTTTGTAAGTTCTCAGAGAGTCGGGTCTGCAAGTGCTTTTGCCTGCCAGGATTTTGTACTCAAATAAATGCTATTTGG >In-frame_ENST00000372414_ENST00000379096_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=504AA_start in transcript=16_stop in transcript=1530 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKN -------------------------------------------------------------- >In-frame_ENST00000372414_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(transcript)=3616nt_BP=995nt GGTTGATTGTCCTGGGCTGTGGCTGGCTGTGGAGCTAGAGCCCTGGATGGCCCCTGAGCCAGCCCCAGGGAGGACGATGGTGCCCCTTGT GCCTGCACTGGTGATGCTTGGTTTGGTGGCAGGCGCCCATGGTGACAGCAAACCTGTCTTCATTAAAGTCCCTGAGGACCAGACTGGGCT GTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTACAGGAGAACCCAAGCCGCGCATCACATGGATGAAGAAGGGGAAGAAAGTCAGCTC CCAGCGCTTCGAGGTCATTGAGTTTGATGATGGGGCAGGGTCAGTGCTTCGGATCCAGCCATTGCGGGTGCAGCGAGATGAAGCCATCTA TGAGTGTACAGCTACTAACAGCCTGGGTGAGATCAACACTAGTGCCAAGCTCTCAGTGCTCGAAGAGGAACAGCTGCCCCCTGGGTTCCC TTCCATCGACATGGGGCCTCAGCTGAAGGTGGTGGAGAAGGCACGCACAGCCACCATGCTATGTGCCGCAGGCGGAAATCCAGACCCTGA GATTTCTTGGTTCAAGGACTTCCTTCCTGTAGACCCTGCCACGAGCAACGGCCGCATCAAGCAGCTGCGTTCAGGTGCCTTGCAGATAGA GAGCAGTGAGGAATCCGACCAAGGCAAGTACGAGTGTGTGGCGACCAACTCGGCAGGCACACGTTACTCAGCCCCTGCGAACCTGTATGT GCGAGTGCGCCGCGTGGCTCCTCGTTTCTCCATCCCTCCCAGCAGCCAGGAGGTGATGCCAGGCGGCAGCGTGAACCTGACATGCGTGGC AGTGGGTGCACCCATGCCCTACGTGAAGTGGATGATGGGGGCCGAGGAGCTCACCAAGGAGGATGAGATGCCAGTTGGCCGCAACGTCCT GGAGCTCAGCAATGTCGTACGCTCTGCCAACTACACCTGTGTGGCCATCTCCTCGCTGGGCATGATCGAGGCCACAGCCCAGGTCACAGT GAAAGGTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGA GCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGC AGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC TTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCT GGAAGATGTAAAATTGCAAGCCTTTTCACATTCCTTTAGTATACGTTCCATTCAGCATTCAATTAGCATGCCTGCTATGAGAAACTCCCC AACTTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTGGAGAAGTCTT GAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTGAGATTCCTACCTTTGTTCTGC TACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGC TTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCACCTCTATTCTTGGGAAACACCCTTTAGTGTACA TTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAATGATCTAAGAAGCTACAGATTG TCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTATAATATTTCCTTTTTTTCCCCT CTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAATTAAAAGTTTGGGTGTATTTTCTT TACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGGTACATATTTTGGTTGAAGACACCA GACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCTAGGTGACTTGAGAGTGGAACC TCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTATATCAACTTATTTTTCACCAGG TTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTATGAACACTGTCATCAATGTTCA GTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCAATCACATTAGGGGAACCATTGTTGTCTTCACTTAATCC ATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGACTAATATAACTTGAAAATTTTTTATACTGAGGGGTTGGTGATAACTCTTGA GGATGTAATGCATTAATAAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAAATGATACTGTAGAACCTGTCT CCTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAAGGTATTCTATTCTAATAACTG CTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTTATTTATTAAATTGTGATTGTTTTA TTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGGCTAGATTTACTTCAGTATAAATTA TCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGATTGCTAGAGTTTTTGTTAGTA CTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTATAGGTCTCAATATTTATTATG AGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTTTTTTTTAACCATCCTTAAATT ATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCTGTTGAAGCATTTTCTCAGAGGAGTGGATCTGTAG AAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTGTTAAATTATTTTTTCTATGAACTAGTCTACTTCTTAAAATTCAAACATAT TCTTTTGATCACATTGTTTCTTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATTTCTTTAGATG AGTGAAATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGATGAAGGTGGGT >In-frame_ENST00000372414_ENST00000518937_TCGA-LN-A4A9_PTPRF_chr1_44054671_+_TPD52_chr8_80976828_length(amino acids)=527AA_start in transcript=16_stop in transcript=1599 MWLAVELEPWMAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEV IEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPM PYVKWMMGAEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKGLLRTDPVPEEGEDVAATISATETLSEEEQEELR RELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PTPRF-TPD52 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PTPRF-TPD52 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PTPRF-TPD52 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PTPRF | C0024623 | Malignant neoplasm of stomach | 1 | CTD_human |
Hgene | PTPRF | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Hgene | PTPRF | C0175755 | Congenital absent nipple | 1 | GENOMICS_ENGLAND |
Hgene | PTPRF | C0235874 | Disease Exacerbation | 1 | CTD_human |
Hgene | PTPRF | C0345967 | Malignant mesothelioma | 1 | CTD_human |
Hgene | PTPRF | C0432357 | Congenital absence of breast with absent nipple | 1 | ORPHANET |
Hgene | PTPRF | C1708349 | Hereditary Diffuse Gastric Cancer | 1 | CTD_human |
Tgene | TPD52 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | TPD52 | C0376358 | Malignant neoplasm of prostate | 2 | CTD_human |
Tgene | TPD52 | C0027643 | Neoplasm Recurrence, Local | 1 | CTD_human |