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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PUM1-PIEZO1 (FusionGDB2 ID:70238) |
Fusion Gene Summary for PUM1-PIEZO1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PUM1-PIEZO1 | Fusion gene ID: 70238 | Hgene | Tgene | Gene symbol | PUM1 | PIEZO1 | Gene ID | 9698 | 9780 |
Gene name | pumilio RNA binding family member 1 | piezo type mechanosensitive ion channel component 1 | |
Synonyms | HSPUM|PUMH|PUMH1|PUML1|SCA47 | DHS|FAM38A|LMPH3|LMPHM6|Mib | |
Cytomap | 1p35.2 | 16q24.3 | |
Type of gene | protein-coding | protein-coding | |
Description | pumilio homolog 1pumilio-1 | piezo-type mechanosensitive ion channel component 1family with sequence similarity 38, member Amembrane protein induced by beta-amyloid treatment | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q92508 | |
Ensembl transtripts involved in fusion gene | ENST00000424085, ENST00000257075, ENST00000373747, ENST00000426105, ENST00000440538, ENST00000373741, ENST00000423018, ENST00000373742, ENST00000490546, | ENST00000301015, ENST00000327397, | |
Fusion gene scores | * DoF score | 38 X 31 X 15=17670 | 6 X 4 X 2=48 |
# samples | 56 | 6 | |
** MAII score | log2(56/17670*10)=-4.97973140249401 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/48*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PUM1 [Title/Abstract] AND PIEZO1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PUM1(31479841)-PIEZO1(88815887), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | PUM1-PIEZO1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. PUM1-PIEZO1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PUM1 | GO:0010608 | posttranscriptional regulation of gene expression | 25100735 |
Hgene | PUM1 | GO:0043488 | regulation of mRNA stability | 26724866 |
Hgene | PUM1 | GO:0051726 | regulation of cell cycle | 20818387 |
Hgene | PUM1 | GO:0051983 | regulation of chromosome segregation | 26724866 |
Hgene | PUM1 | GO:1900246 | positive regulation of RIG-I signaling pathway | 25340845 |
Hgene | PUM1 | GO:2000637 | positive regulation of gene silencing by miRNA | 20818387|22345517 |
Fusion gene breakpoints across PUM1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across PIEZO1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-CD-8527-01A | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
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Fusion Gene ORF analysis for PUM1-PIEZO1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000424085 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-intron | ENST00000424085 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
Frame-shift | ENST00000257075 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
5CDS-intron | ENST00000257075 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
Frame-shift | ENST00000373747 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
5CDS-intron | ENST00000373747 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
Frame-shift | ENST00000426105 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
5CDS-intron | ENST00000426105 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
Frame-shift | ENST00000440538 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
5CDS-intron | ENST00000440538 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
In-frame | ENST00000373741 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
5CDS-intron | ENST00000373741 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-3CDS | ENST00000423018 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-intron | ENST00000423018 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-3CDS | ENST00000373742 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-intron | ENST00000373742 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-3CDS | ENST00000490546 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
intron-intron | ENST00000490546 | ENST00000327397 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000373741 | PUM1 | chr1 | 31479841 | - | ENST00000301015 | PIEZO1 | chr16 | 88815887 | - | 8616 | 855 | 113 | 8356 | 2747 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000373741 | ENST00000301015 | PUM1 | chr1 | 31479841 | - | PIEZO1 | chr16 | 88815887 | - | 0.004015237 | 0.9959848 |
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Fusion Genomic Features for PUM1-PIEZO1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PUM1-PIEZO1 |
Go to FGviewer for the breakpoints of chr1:31479841-chr16:88815887 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | PIEZO1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Pore-forming subunit of a mechanosensitive non-specific cation channel (PubMed:23479567, PubMed:23695678). Generates currents characterized by a linear current-voltage relationship that are sensitive to ruthenium red and gadolinium. Plays a key role in epithelial cell adhesion by maintaining integrin activation through R-Ras recruitment to the ER, most probably in its activated state, and subsequent stimulation of calpain signaling (PubMed:20016066). In the kidney, may contribute to the detection of intraluminal pressure changes and to urine flow sensing. Acts as shear-stress sensor that promotes endothelial cell organization and alignment in the direction of blood flow through calpain activation (PubMed:25119035). Plays a key role in blood vessel formation and vascular structure in both development and adult physiology (By similarity). Acts as sensor of phosphatidylserine (PS) flipping at the plasma membrane and governs morphogenesis of muscle cells. In myoblasts, flippase-mediated PS enrichment at the inner leaflet of plasma membrane triggers channel activation and Ca2+ influx followed by Rho GTPases signal transduction, leading to assembly of cortical actomyosin fibers and myotube formation. {ECO:0000250|UniProtKB:E2JF22, ECO:0000269|PubMed:20016066, ECO:0000269|PubMed:23479567, ECO:0000269|PubMed:23695678, ECO:0000269|PubMed:25119035, ECO:0000269|PubMed:29799007}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1339_1368 | 21.333333333333332 | 2522.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2198_2431 | 21.333333333333332 | 2522.0 | Topological domain | Extracellular | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1043_1063 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1160_1180 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1184_1204 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 118_138 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1218_1240 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1247_1264 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1277_1297 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1678_1698 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1700_1720 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1734_1754 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 194_214 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 1962_1982 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2003_2023 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2032_2052 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2061_2081 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2100_2122 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2129_2149 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2177_2197 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 218_238 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 2432_2452 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 248_268 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 27_47 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 302_322 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 428_448 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 460_480 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 514_534 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 579_599 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 602_622 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 629_649 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 64_84 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 681_701 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 823_843 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 852_872 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 926_946 | 21.333333333333332 | 2522.0 | Transmembrane | Helical | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 987_1007 | 21.333333333333332 | 2522.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 393_613 | 180.33333333333334 | 1187.0 | Compositional bias | Note=Ala-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 475_523 | 180.33333333333334 | 1187.0 | Compositional bias | Note=Gln-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 642_815 | 180.33333333333334 | 1187.0 | Compositional bias | Note=Ser-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 393_613 | 180.33333333333334 | 1189.0 | Compositional bias | Note=Ala-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 475_523 | 180.33333333333334 | 1189.0 | Compositional bias | Note=Gln-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 642_815 | 180.33333333333334 | 1189.0 | Compositional bias | Note=Ser-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 393_613 | 180.33333333333334 | 1163.0 | Compositional bias | Note=Ala-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 475_523 | 180.33333333333334 | 1163.0 | Compositional bias | Note=Gln-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 642_815 | 180.33333333333334 | 1163.0 | Compositional bias | Note=Ser-rich |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 828_1168 | 180.33333333333334 | 1187.0 | Domain | PUM-HD |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 828_1168 | 180.33333333333334 | 1189.0 | Domain | PUM-HD |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 828_1168 | 180.33333333333334 | 1163.0 | Domain | PUM-HD |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 1028_1063 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 6 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 1064_1099 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 7 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 1103_1142 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 8 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 848_883 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 1 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 884_919 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 2 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 920_955 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 3 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 956_991 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 4 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000257075 | - | 4 | 22 | 992_1027 | 180.33333333333334 | 1187.0 | Repeat | Pumilio 5 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 1028_1063 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 6 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 1064_1099 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 7 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 1103_1142 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 8 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 848_883 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 1 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 884_919 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 2 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 920_955 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 3 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 956_991 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 4 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000426105 | - | 4 | 22 | 992_1027 | 180.33333333333334 | 1189.0 | Repeat | Pumilio 5 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 1028_1063 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 6 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 1064_1099 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 7 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 1103_1142 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 8 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 848_883 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 1 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 884_919 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 2 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 920_955 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 3 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 956_991 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 4 |
Hgene | PUM1 | chr1:31479841 | chr16:88815887 | ENST00000440538 | - | 4 | 22 | 992_1027 | 180.33333333333334 | 1163.0 | Repeat | Pumilio 5 |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 6_91 | 21.333333333333332 | 2522.0 | Compositional bias | Note=Leu-rich | |
Tgene | PIEZO1 | chr1:31479841 | chr16:88815887 | ENST00000301015 | 0 | 51 | 5_25 | 21.333333333333332 | 2522.0 | Transmembrane | Helical |
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Fusion Gene Sequence for PUM1-PIEZO1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000373741_ENST00000301015_TCGA-CD-8527-01A_PUM1_chr1_31479841_-_PIEZO1_chr16_88815887_length(transcript)=8616nt_BP=855nt AACCCCGCGTGCCCAGCTCCAGGCCGTGTTCTCCCAGGTGCGGGCCGGCGGGACCCCGCCTTCGGCCCTGGCGGCGCGCGCTCGCCTAGC GGGCGGGCACTCGCGCGCAGCGTTTGTGTTGCCTGCGAGTTTCCCGAGTTCACACAGGCCCTGGGTTGGCATGGCAACCAGGCAACCTGT TCCAGAGCCGCCAGCCTTCTCCGCACATGCCGCTGCCACCGCCGGGGCCGGGGCCGGAGCCTATCCCAGGATGCACCGCGCCAACCCAGT CCCCAGTGGGCCGCCATGTTGTCGGAGTGAAAGGTGTTGGTGGAATGAGCGTTGCATGTGTCTTGAAGAGAAAAGCAGTGCTTTGGCAGG ACTCTTTCAGCCCCCACCTGAAACATCACCCTCAAGAACCAGCTAATCCCAACATGCCTGTTGTTTTGACATCTGGAACAGGGTCGCAAG CGCAGCCACAACCAGCTGCAAATCAGGCTCTTGCAGCTGGGACTCACTCCAGCCCTGTCCCAGGATCTATAGGAGTTGCAGGCCGTTCCC AGGACGACGCTATGGTGGACTACTTCTTTCAGAGGCAGCATGGTGAGCAGCTTGGGGGAGGAGGAAGTGGAGGAGGCGGCTATAATAATA GCAAACATCGATGGCCTACTGGGGATAACATTCATGCAGAACATCAGGTGCGTTCCATGGATGAACTGAATCATGATTTTCAAGCACTTG CTCTGGAGGGAAGAGCGATGGGAGAGCAGCTCTTGCCAGGTAAAAAGTTTTGGGAAACAGATGAATCCAGCAAAGATGGACCAAAAGGAA TATTCCTGGGTGATCAATGGCGAGACAGTGCCTGGGGAACATCAGCCTGCCTGCTCCGCTTCAGCGGACTCTCGCTGGTCTACCTGCTCT TCCTGCTGCTGCTGCCCTGGTTCCCCGGCCCCACCCGATGCGGCCTCCAAGGTCACACAGGCCGCCTCCTGCGGGCATTGCTGGGCCTCA GCCTGCTCTTCCTGGTGGCCCATCTCGCCCTCCAGATCTGCCTGCATATTGTGCCCCGCCTGGACCAGCTCCTGGGACCCAGCTGCAGCC GCTGGGAGACCCTCTCGCGACACATAGGGGTCACAAGGCTGGACCTGAAGGACATCCCCAACGCCATCCGGCTGGTGGCCCCTGACCTGG GCATCTTGGTGGTCTCCTCTGTCTGCCTCGGCATCTGCGGGCGCCTTGCAAGGAACACCCGGCAGAGCCCACATCCACGGGAGCTGGATG ATGATGAGAGGGATGTGGATGCCAGCCCGACGGCAGGGCTGCAGGAAGCAGCAACGCTGGCCCCTACACGGAGGTCACGGCTGGCCGCTC GTTTCCGAGTCACGGCCCACTGGCTGCTGGTGGCGGCTGGGCGGGTCCTGGCCGTAACACTGCTTGCACTGGCAGGCATCGCCCACCCCT CGGCCCTCTCCAGTGTCTACCTGCTGCTCTTCCTGGCCCTCTGCACCTGGTGGGCCTGCCACTTTCCCATCAGCACTCGGGGCTTCAGCA GACTCTGCGTCGCGGTGGGGTGCTTCGGCGCCGGCCATCTCATCTGCCTCTACTGCTACCAGATGCCCTTGGCACAGGCTCTGCTCCCGC CTGCCGGCATCTGGGCTAGGGTGCTGGGTCTCAAGGACTTCGTGGGTCCCACCAACTGCTCCAGCCCCCACGCGCTGGTCCTCAACACCG GCCTGGACTGGCCTGTGTATGCCAGCCCCGGCGTCCTCCTGCTGCTGTGCTACGCCACGGCCTCTCTGCGCAAGCTCCGCGCGTACCGCC CCTCCGGCCAGAGGAAGGAGGCGGCAAAGGGGTATGAGGCTCGGGAGCTGGAGCTAGCAGAGCTGGACCAGTGGCCCCAGGAACGGGAGT CTGACCAGCACGTGGTGCCCACAGCACCCGACACCGAGGCTGATAACTGCATCGTGCACGAGCTGACCGGCCAGAGCTCCGTCCTGCGGC GGCCTGTGCGGCCCAAGCGGGCTGAGCCCAGGGAGGCGTCTCCGCTCCACAGCCTGGGCCACCTCATCATGGACCAGAGCTATGTGTGCG CGCTCATTGCCATGATGGTATGGAGCATCACCTACCACAGCTGGCTGACCTTCGTACTGCTGCTCTGGGCCTGCCTCATCTGGACGGTGC GCAGCCGCCACCAACTGGCCATGCTGTGCTCGCCCTGCATCCTGCTGTATGGGATGACGCTGTGCTGCCTACGCTACGTGTGGGCCATGG ACCTGCGCCCTGAGCTGCCCACCACCCTGGGCCCCGTCAGCCTGCGCCAGCTGGGGCTGGAGCACACCCGCTACCCCTGTCTGGACCTTG GTGCCATGTTGCTCTACACCCTGACCTTCTGGCTCCTGCTGCGCCAGTTTGTGAAAGAGAAGCTGCTGAAGTGGGCAGAGTCTCCAGCTG CGCTGACGGAGGTCACCGTGGCAGACACAGAGCCCACGCGGACGCAGACGCTGTTGCAGAGCCTGGGGGAGCTGGTGAAGGGCGTGTACG CCAAGTACTGGATCTATGTGTGTGCTGGCATGTTCATCGTGGTCAGCTTCGCCGGCCGCCTCGTGGTCTACAAGATTGTCTACATGTTCC TCTTCCTGCTCTGCCTCACCCTCTTCCAGGTCTACTACAGCCTGTGGCGGAAGCTGCTCAAGGCCTTCTGGTGGCTCGTGGTGGCCTACA CCATGCTGGTCCTCATCGCCGTCTACACCTTCCAGTTCCAGGACTTCCCTGCCTACTGGCGCAACCTCACTGGCTTCACCGACGAGCAGC TGGGGGACCTGGGCCTGGAGCAGTTCAGCGTGTCCGAGCTCTTCTCCAGCATCCTGGTGCCCGGCTTCTTCCTCCTGGCCTGCATCCTGC AGCTGCACTACTTCCACAGGCCCTTCATGCAGCTCACCGACATGGAGCACGTGTCCCTGCCTGGCACGCGCCTCCCGCGCTGGGCTCACA GGCAGGATGCAGTGAGTGGGACCCCACTGCTGCGGGAGGAGCAGCAGGAGCATCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGG ACTCCAGGGACGAGGGGCTGGGCGTGGCCACTCCCCACCAGGCCACGCAGGTGCCTGAAGGGGCAGCCAAGTGGGGCCTGGTGGCTGAGC GGCTGCTGGAGCTGGCAGCCGGCTTCTCGGACGTCCTCTCACGCGTGCAGGTGTTCCTGCGGCGGCTGCTGGAGCTTCACGTTTTCAAGC TGGTGGCCCTGTACACCGTCTGGGTGGCCCTGAAGGAGGTGTCGGTGATGAACCTGCTGCTGGTGGTGCTGTGGGCCTTCGCCCTGCCCT ACCCACGCTTCCGGCCCATGGCCTCCTGCCTGTCCACCGTGTGGACCTGCGTCATCATCGTGTGTAAGATGCTGTACCAGCTCAAGGTTG TCAACCCCCAGGAGTATTCCAGCAACTGCACCGAGCCCTTCCCCAACAGCACCAACTTGCTGCCCACGGAGATCAGCCAGTCCCTGCTGT ACCGGGGGCCCGTGGACCCTGCCAACTGGTTTGGGGTGCGGAAAGGGTTCCCCAACCTGGGCTACATCCAGAACCACCTGCAAGTGCTGC TGCTGCTGGTATTCGAGGCCATCGTGTACCGGCGCCAGGAGCACTACCGCCGGCAGCACCAGCTGGCCCCGCTGCCTGCCCAGGCCGTGT TTGCCAGCGGCACCCGCCAGCAGCTGGACCAGGATCTGCTCGGCTGCCTCAAGTACTTCATCAACTTCTTCTTCTACAAATTCGGGCTGG AGATCTGCTTCCTGATGGCCGTGAACGTGATCGGGCAGCGCATGAACTTTCTGGTGACCCTGCACGGTTGCTGGCTGGTGGCCATCCTCA CCCGCAGGCACCGCCAGGCCATTGCCCGCCTCTGGCCCAACTACTGCCTCTTCCTGGCGCTGTTCCTGCTGTACCAGTACCTGCTGTGCC TGGGGATGCCCCCGGCCCTGTGCATTGATTATCCCTGGCGCTGGAGCCGGGCCGTCCCCATGAACTCCGCACTCATCAAGTGGCTGTACC TGCCTGATTTCTTCCGGGCCCCCAACTCCACCAACCTCATCAGCGACTTTCTCCTGCTGCTGTGCGCCTCCCAGCAGTGGCAGGTGTTCT CAGCTGAGCGCACAGAGGAGTGGCAGCGCATGGCTGGCGTCAACACCGACCGCCTGGAGCCGCTGCGGGGGGAGCCCAACCCCGTGCCCA ACTTTATCCACTGCAGGTCCTACCTTGACATGCTGAAGGTGGCCGTCTTCCGATACCTGTTCTGGCTGGTGCTGGTGGTGGTGTTTGTCA CGGGGGCCACCCGCATCAGCATCTTCGGGCTGGGCTACCTGCTGGCCTGCTTCTACCTGCTGCTCTTCGGCACGGCCCTGCTGCAGAGGG ACACACGGGCCCGCCTCGTGCTGTGGGACTGCCTCATTCTGTACAACGTCACCGTCATCATCTCCAAGAACATGCTGTCGCTCCTGGCCT GCGTCTTCGTGGAGCAGATGCAGACCGGCTTCTGCTGGGTCATCCAGCTCTTCAGCCTTGTATGCACCGTCAAGGGCTACTATGACCCCA AGGAGATGATGGACAGAGACCAGGACTGCCTGCTGCCTGTGGAGGAGGCTGGCATCATCTGGGACAGCGTCTGCTTCTTCTTCCTGCTGC TGCAGCGCCGCGTCTTCCTTAGCCATTACTACCTGCACGTCAGGGCCGACCTCCAGGCCACCGCCCTGCTAGCCTCCAGGGGCTTCGCCC TCTACAACGCTGCCAACCTCAAGAGCATTGACTTTCACCGCAGGATAGAGGAGAAGTCCCTGGCCCAGCTGAAAAGACAGATGGAGCGTA TCCGTGCCAAGCAGGAGAAGCACAGGCAGGGCCGGGTGGACCGCAGTCGCCCCCAGGACACCCTGGGCCCCAAGGACCCCGGCCTGGAGC CAGGGCCCGACAGTCCAGGGGGCTCCTCCCCGCCACGGAGGCAGTGGTGGCGGCCCTGGCTGGACCACGCCACAGTCATCCACTCCGGGG ACTACTTCCTGTTTGAGTCCGACAGTGAGGAAGAGGAGGAGGCTGTTCCTGAAGACCCGAGGCCGTCGGCACAGAGTGCCTTCCAGCTGG CGTACCAGGCATGGGTGACCAACGCCCAGGCGGTGCTGAGGCGGCGGCAGCAGGAGCAGGAGCAGGCAAGGCAGGAACAGGCAGGACAGC TACCCACAGGAGGTGGTCCCAGCCAGGAGGTGGAGCCAGCAGAGGGCCCCGAGGAGGCAGCGGCAGGCCGGAGCCATGTGGTGCAGAGGG TGCTGAGCACGGCGCAGTTCCTGTGGATGCTGGGGCAGGCGCTAGTGGATGAGCTGACACGCTGGCTGCAGGAGTTCACCCGGCACCACG GCACCATGAGCGACGTGCTGCGGGCAGAGCGCTACCTCCTCACACAGGAGCTCCTGCAGGGCGGCGAAGTGCACAGGGGCGTGCTGGATC AGCTGTACACAAGCCAGGCCGAGGCCACGCTGCCAGGCCCCACCGAGGCCCCCAATGCCCCAAGCACCGTGTCCAGTGGGCTGGGCGCGG AGGAGCCACTCAGCAGCATGACAGACGACATGGGCAGCCCCCTGAGCACCGGCTACCACACGCGCAGTGGCAGTGAGGAGGCAGTCACCG ACCCCGGGGAGCGTGAGGCTGGTGCCTCTCTGTACCAGGGACTGATGCGGACGGCCAGCGAGCTGCTCCTGGACAGGCGCCTGCGCATCC CAGAGCTGGAGGAGGCAGAGCTGTTTGCGGAGGGGCAGGGCCGGGCGCTGCGGCTGCTGCGGGCCGTGTACCAGTGTGTGGCCGCCCACT CGGAGCTGCTCTGCTACTTCATCATCATCCTCAACCACATGGTCACGGCCTCCGCCGGCTCGCTGGTGCTGCCCGTGCTCGTCTTCCTGT GGGCCATGCTGTCGATCCCGAGGCCCAGCAAGCGCTTCTGGATGACGGCCATCGTCTTCACCGAGATCGCGGTGGTCGTCAAGTACCTGT TCCAGTTTGGGTTCTTCCCCTGGAACAGCCACGTGGTGCTGCGGCGCTACGAGAACAAGCCCTACTTCCCGCCCCGCATCCTGGGCCTGG AGAAGACTGACGGCTACATCAAGTACGACCTGGTGCAGCTCATGGCCCTTTTCTTCCACCGCTCCCAGCTGCTGTGCTATGGCCTCTGGG ACCATGAGGAGGACTCACCATCCAAGGAGCATGACAAGAGCGGCGAGGAGGAGCAGGGAGCCGAGGAGGGGCCAGGGGTGCCTGCGGCCA CCACCGAAGACCACATTCAGGTGGAAGCCAGGGTCGGACCCACGGACGGGACCCCAGAACCCCAAGTGGAGCTCAGGCCCCGTGATACGA GGCGCATCAGTCTACGTTTTAGAAGAAGGAAGAAGGAGGGCCCAGCACGGAAAGGAGCGGCAGCCATCGAAGCTGAGGACAGGGAGGAAG AAGAGGGGGAGGAAGAGAAAGAGGCCCCCACGGGGAGAGAGAAGAGGCCAAGCCGCTCTGGAGGAAGAGTAAGGGCGGCCGGGCGGCGGC TGCAGGGCTTCTGCCTGTCCCTGGCCCAGGGCACATATCGGCCGCTACGGCGCTTCTTCCACGACATCCTGCACACCAAGTACCGCGCAG CCACCGACGTCTATGCCCTCATGTTCCTGGCTGATGTTGTCGACTTCATCATCATCATTTTTGGCTTCTGGGCCTTTGGGAAGCACTCGG CGGCCACAGACATCACGTCCTCCCTATCAGACGACCAGGTACCCGAGGCTTTCCTGGTCATGCTGCTGATCCAGTTCAGTACCATGGTGG TTGACCGCGCCCTCTACCTGCGCAAGACCGTGCTGGGCAAGCTGGCCTTCCAGGTGGCGCTGGTGCTGGCCATCCACCTATGGATGTTCT TCATCCTGCCCGCCGTCACTGAGAGGATGTTCAACCAGAATGTGGTGGCCCAGCTCTGGTACTTCGTGAAGTGCATCTACTTCGCCCTGT CCGCCTACCAGATCCGCTGCGGCTACCCCACCCGCATCCTCGGCAACTTCCTCACCAAGAAGTACAATCATCTCAACCTCTTCCTCTTCC AGGGGTTCCGGCTGGTGCCGTTCCTGGTGGAGCTGCGGGCAGTGATGGACTGGGTGTGGACGGACACCACGCTGTCCCTGTCCAGCTGGA TGTGTGTGGAGGACATCTATGCCAACATCTTCATCATCAAATGCAGCCGAGAGACAGAGAAGAAATACCCGCAGCCCAAAGGGCAGAAGA AGAAGAAGATCGTCAAGTACGGCATGGGTGGCCTCATCATCCTCTTCCTCATCGCCATCATCTGGTTCCCACTGCTCTTCATGTCGCTGG TGCGCTCCGTGGTTGGGGTTGTCAACCAGCCCATCGATGTCACCGTCACCCTGAAGCTGGGCGGCTATGAGCCGCTGTTCACCATGAGCG CCCAGCAGCCGTCCATCATCCCCTTCACGGCCCAGGCCTATGAGGAGCTGTCCCGGCAGTTTGACCCCCAGCCGCTGGCCATGCAGTTCA TCAGCCAGTACAGCCCTGAGGACATCGTCACGGCGCAGATTGAGGGCAGCTCCGGGGCGCTGTGGCGCATCAGTCCCCCCAGCCGTGCCC AGATGAAGCGGGAGCTCTACAACGGCACGGCCGACATCACCCTGCGCTTCACCTGGAACTTCCAGAGGGACCTGGCGAAGGGAGGCACTG TGGAGTATGCCAACGAGAAGCACATGCTGGCCCTGGCCCCCAACAGCACTGCACGGCGGCAGCTGGCCAGCCTGCTCGAGGGCACCTCGG ACCAGTCTGTGGTCATCCCTAATCTCTTCCCCAAGTACATCCGTGCCCCCAACGGGCCCGAAGCCAACCCTGTGAAGCAGCTGCAGCCCA ATGAGGAGGCCGACTACCTCGGCGTGCGTATCCAGCTGCGGAGGGAGCAGGGTGCGGGGGCCACCGGCTTCCTCGAATGGTGGGTCATCG AGCTGCAGGAGTGCCGGACCGACTGCAACCTGCTGCCCATGGTCATTTTCAGTGACAAGGTCAGCCCACCGAGCCTCGGCTTCCTGGCTG GCTACGGCATCATGGGGCTGTACGTGTCCATCGTGCTGGTCATCGGCAAGTTCGTGCGCGGATTCTTCAGCGAGATCTCGCACTCCATTA TGTTCGAGGAGCTGCCGTGCGTGGACCGCATCCTCAAGCTCTGCCAGGACATCTTCCTGGTGCGGGAGACTCGGGAGCTGGAGCTGGAGG AGGAGTTGTACGCCAAGCTCATCTTCCTCTACCGCTCACCGGAGACCATGATCAAGTGGACTCGTGAGAAGGAGTAGGAGCTGCTGCTGG CGCCCGAGAGGGAAGGAGCCGGCCTGCTGGGCAGCGTGGCCACAAGGGGCGGCACTCCTCAGGCCGGGGGAGCCACTGCCCCGTCCAAGG CCGCCAGCTGTGATGCATCCTCCCGGCCTGCCTGAGCCCTGATGCTGCTGTCAGAGAAGGACACTGCGTCCCCACGGCCTGCGTGGCGCT >In-frame_ENST00000373741_ENST00000301015_TCGA-CD-8527-01A_PUM1_chr1_31479841_-_PIEZO1_chr16_88815887_length(amino acids)=2747AA_start in transcript=113_stop in transcript=8356 MCCLRVSRVHTGPGLAWQPGNLFQSRQPSPHMPLPPPGPGPEPIPGCTAPTQSPVGRHVVGVKGVGGMSVACVLKRKAVLWQDSFSPHLK HHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSSPVPGSIGVAGRSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTG DNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGDQWRDSAWGTSACLLRFSGLSLVYLLFLLLLPWF PGPTRCGLQGHTGRLLRALLGLSLLFLVAHLALQICLHIVPRLDQLLGPSCSRWETLSRHIGVTRLDLKDIPNAIRLVAPDLGILVVSSV CLGICGRLARNTRQSPHPRELDDDERDVDASPTAGLQEAATLAPTRRSRLAARFRVTAHWLLVAAGRVLAVTLLALAGIAHPSALSSVYL LLFLALCTWWACHFPISTRGFSRLCVAVGCFGAGHLICLYCYQMPLAQALLPPAGIWARVLGLKDFVGPTNCSSPHALVLNTGLDWPVYA SPGVLLLLCYATASLRKLRAYRPSGQRKEAAKGYEARELELAELDQWPQERESDQHVVPTAPDTEADNCIVHELTGQSSVLRRPVRPKRA EPREASPLHSLGHLIMDQSYVCALIAMMVWSITYHSWLTFVLLLWACLIWTVRSRHQLAMLCSPCILLYGMTLCCLRYVWAMDLRPELPT TLGPVSLRQLGLEHTRYPCLDLGAMLLYTLTFWLLLRQFVKEKLLKWAESPAALTEVTVADTEPTRTQTLLQSLGELVKGVYAKYWIYVC AGMFIVVSFAGRLVVYKIVYMFLFLLCLTLFQVYYSLWRKLLKAFWWLVVAYTMLVLIAVYTFQFQDFPAYWRNLTGFTDEQLGDLGLEQ FSVSELFSSILVPGFFLLACILQLHYFHRPFMQLTDMEHVSLPGTRLPRWAHRQDAVSGTPLLREEQQEHQQQQQEEEEEEEDSRDEGLG VATPHQATQVPEGAAKWGLVAERLLELAAGFSDVLSRVQVFLRRLLELHVFKLVALYTVWVALKEVSVMNLLLVVLWAFALPYPRFRPMA SCLSTVWTCVIIVCKMLYQLKVVNPQEYSSNCTEPFPNSTNLLPTEISQSLLYRGPVDPANWFGVRKGFPNLGYIQNHLQVLLLLVFEAI VYRRQEHYRRQHQLAPLPAQAVFASGTRQQLDQDLLGCLKYFINFFFYKFGLEICFLMAVNVIGQRMNFLVTLHGCWLVAILTRRHRQAI ARLWPNYCLFLALFLLYQYLLCLGMPPALCIDYPWRWSRAVPMNSALIKWLYLPDFFRAPNSTNLISDFLLLLCASQQWQVFSAERTEEW QRMAGVNTDRLEPLRGEPNPVPNFIHCRSYLDMLKVAVFRYLFWLVLVVVFVTGATRISIFGLGYLLACFYLLLFGTALLQRDTRARLVL WDCLILYNVTVIISKNMLSLLACVFVEQMQTGFCWVIQLFSLVCTVKGYYDPKEMMDRDQDCLLPVEEAGIIWDSVCFFFLLLQRRVFLS HYYLHVRADLQATALLASRGFALYNAANLKSIDFHRRIEEKSLAQLKRQMERIRAKQEKHRQGRVDRSRPQDTLGPKDPGLEPGPDSPGG SSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEEAVPEDPRPSAQSAFQLAYQAWVTNAQAVLRRRQQEQEQARQEQAGQLPTGGGPS QEVEPAEGPEEAAAGRSHVVQRVLSTAQFLWMLGQALVDELTRWLQEFTRHHGTMSDVLRAERYLLTQELLQGGEVHRGVLDQLYTSQAE ATLPGPTEAPNAPSTVSSGLGAEEPLSSMTDDMGSPLSTGYHTRSGSEEAVTDPGEREAGASLYQGLMRTASELLLDRRLRIPELEEAEL FAEGQGRALRLLRAVYQCVAAHSELLCYFIIILNHMVTASAGSLVLPVLVFLWAMLSIPRPSKRFWMTAIVFTEIAVVVKYLFQFGFFPW NSHVVLRRYENKPYFPPRILGLEKTDGYIKYDLVQLMALFFHRSQLLCYGLWDHEEDSPSKEHDKSGEEEQGAEEGPGVPAATTEDHIQV EARVGPTDGTPEPQVELRPRDTRRISLRFRRRKKEGPARKGAAAIEAEDREEEEGEEEKEAPTGREKRPSRSGGRVRAAGRRLQGFCLSL AQGTYRPLRRFFHDILHTKYRAATDVYALMFLADVVDFIIIIFGFWAFGKHSAATDITSSLSDDQVPEAFLVMLLIQFSTMVVDRALYLR KTVLGKLAFQVALVLAIHLWMFFILPAVTERMFNQNVVAQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTKKYNHLNLFLFQGFRLVPF LVELRAVMDWVWTDTTLSLSSWMCVEDIYANIFIIKCSRETEKKYPQPKGQKKKKIVKYGMGGLIILFLIAIIWFPLLFMSLVRSVVGVV NQPIDVTVTLKLGGYEPLFTMSAQQPSIIPFTAQAYEELSRQFDPQPLAMQFISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKRELYN GTADITLRFTWNFQRDLAKGGTVEYANEKHMLALAPNSTARRQLASLLEGTSDQSVVIPNLFPKYIRAPNGPEANPVKQLQPNEEADYLG VRIQLRREQGAGATGFLEWWVIELQECRTDCNLLPMVIFSDKVSPPSLGFLAGYGIMGLYVSIVLVIGKFVRGFFSEISHSIMFEELPCV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PUM1-PIEZO1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PUM1-PIEZO1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PUM1-PIEZO1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PUM1 | C0004134 | Ataxia | 1 | GENOMICS_ENGLAND |
Hgene | PUM1 | C0010417 | Cryptorchidism | 1 | GENOMICS_ENGLAND |
Hgene | PUM1 | C0019193 | Hepatitis, Toxic | 1 | CTD_human |
Hgene | PUM1 | C0036572 | Seizures | 1 | GENOMICS_ENGLAND |
Hgene | PUM1 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
Hgene | PUM1 | C0860207 | Drug-Induced Liver Disease | 1 | CTD_human |
Hgene | PUM1 | C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human |
Hgene | PUM1 | C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human |
Hgene | PUM1 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | PUM1 | C4025871 | Abnormality of the face | 1 | GENOMICS_ENGLAND |
Hgene | PUM1 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
Hgene | PUM1 | C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |
Hgene | PUM1 | C4693672 | SPINOCEREBELLAR ATAXIA 47 | 1 | GENOMICS_ENGLAND;UNIPROT |
Tgene | PIEZO1 | C4551512 | DEHYDRATED HEREDITARY STOMATOCYTOSIS 1 WITH OR WITHOUT PSEUDOHYPERKALEMIA AND/OR PERINATAL EDEMA | 7 | GENOMICS_ENGLAND;UNIPROT |
Tgene | PIEZO1 | C4225184 | LYMPHATIC MALFORMATION 6 | 4 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Tgene | PIEZO1 | C0272051 | Xerocytosis | 3 | GENOMICS_ENGLAND;ORPHANET |
Tgene | PIEZO1 | C0272048 | stomatocytic anemia | 2 | GENOMICS_ENGLAND |
Tgene | PIEZO1 | C0677598 | Stomatocytosis Result | 2 | GENOMICS_ENGLAND |