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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:QSER1-GAS2 (FusionGDB2 ID:70582)

Fusion Gene Summary for QSER1-GAS2

check button Fusion gene summary
Fusion gene informationFusion gene name: QSER1-GAS2
Fusion gene ID: 70582
HgeneTgene
Gene symbol

QSER1

GAS2

Gene ID

79832

2620

Gene nameglutamine and serine rich 1growth arrest specific 2
Synonyms-GAS-2
Cytomap

11p13

11p14.3

Type of geneprotein-codingprotein-coding
Descriptionglutamine and serine-rich protein 1growth arrest-specific protein 2
Modification date2020031320200313
UniProtAcc.

Q86XJ1

Ensembl transtripts involved in fusion geneENST00000399302, ENST00000527250, 
ENST00000527788, 		ENST00000454584, 
ENST00000278187, ENST00000433790, 
ENST00000533092, 
Fusion gene scores* DoF score6 X 4 X 4=963 X 4 X 3=36
# samples 74
** MAII scorelog2(7/96*10)=-0.45567948377619
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(4/36*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: QSER1 [Title/Abstract] AND GAS2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointQSER1(32914880)-GAS2(22747838), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across QSER1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across GAS2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-B6-A0WT-01AQSER1chr11

32914880

+GAS2chr11

22747838

+
ChimerDB4BRCATCGA-B6-A0WTQSER1chr11

32914880

+GAS2chr11

22747837

+
ChimerDB4BRCATCGA-B6-A0WT-01AQSER1chr11

32914880

+GAS2chr11

22747838

+
ChimerDB4BRCATCGA-B6-A0WT-01AQSER1chr11

32914880

-GAS2chr11

22747838

+


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Fusion Gene ORF analysis for QSER1-GAS2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000399302ENST00000454584QSER1chr11

32914880

+GAS2chr11

22747838

+
5UTR-3CDSENST00000399302ENST00000278187QSER1chr11

32914880

+GAS2chr11

22747838

+
5UTR-3CDSENST00000399302ENST00000433790QSER1chr11

32914880

+GAS2chr11

22747838

+
5UTR-intronENST00000399302ENST00000533092QSER1chr11

32914880

+GAS2chr11

22747838

+
3UTR-3CDSENST00000527250ENST00000454584QSER1chr11

32914880

+GAS2chr11

22747838

+
3UTR-3CDSENST00000527250ENST00000278187QSER1chr11

32914880

+GAS2chr11

22747838

+
3UTR-3CDSENST00000527250ENST00000433790QSER1chr11

32914880

+GAS2chr11

22747838

+
3UTR-intronENST00000527250ENST00000533092QSER1chr11

32914880

+GAS2chr11

22747838

+
intron-3CDSENST00000527788ENST00000454584QSER1chr11

32914880

+GAS2chr11

22747838

+
intron-3CDSENST00000527788ENST00000278187QSER1chr11

32914880

+GAS2chr11

22747838

+
intron-3CDSENST00000527788ENST00000433790QSER1chr11

32914880

+GAS2chr11

22747838

+
intron-intronENST00000527788ENST00000533092QSER1chr11

32914880

+GAS2chr11

22747838

+
5UTR-3CDSENST00000399302ENST00000454584QSER1chr11

32914880

+GAS2chr11

22747837

+
5UTR-3CDSENST00000399302ENST00000278187QSER1chr11

32914880

+GAS2chr11

22747837

+
5UTR-3CDSENST00000399302ENST00000433790QSER1chr11

32914880

+GAS2chr11

22747837

+
5UTR-intronENST00000399302ENST00000533092QSER1chr11

32914880

+GAS2chr11

22747837

+
3UTR-3CDSENST00000527250ENST00000454584QSER1chr11

32914880

+GAS2chr11

22747837

+
3UTR-3CDSENST00000527250ENST00000278187QSER1chr11

32914880

+GAS2chr11

22747837

+
3UTR-3CDSENST00000527250ENST00000433790QSER1chr11

32914880

+GAS2chr11

22747837

+
3UTR-intronENST00000527250ENST00000533092QSER1chr11

32914880

+GAS2chr11

22747837

+
intron-3CDSENST00000527788ENST00000454584QSER1chr11

32914880

+GAS2chr11

22747837

+
intron-3CDSENST00000527788ENST00000278187QSER1chr11

32914880

+GAS2chr11

22747837

+
intron-3CDSENST00000527788ENST00000433790QSER1chr11

32914880

+GAS2chr11

22747837

+
intron-intronENST00000527788ENST00000533092QSER1chr11

32914880

+GAS2chr11

22747837

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for QSER1-GAS2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
QSER1chr1132914880+GAS2chr1122747837+1.79E-070.99999976
QSER1chr1132914880+GAS2chr1122747837+1.79E-070.99999976
QSER1chr1132914880+GAS2chr1122747837+1.79E-070.99999976
QSER1chr1132914880+GAS2chr1122747837+1.79E-070.99999976

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for QSER1-GAS2


check button Go to

FGviewer for the breakpoints of :-:

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.GAS2

Q86XJ1

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Cytoskeletal linker protein. May promote and stabilize the formation of the actin and microtubule network. {ECO:0000269|PubMed:21561867}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for QSER1-GAS2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for QSER1-GAS2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for QSER1-GAS2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for QSER1-GAS2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneGAS2C0010606Adenoid Cystic Carcinoma1CTD_human
TgeneGAS2C0036095Salivary Gland Neoplasms1CTD_human
TgeneGAS2C0220636Malignant neoplasm of salivary gland1CTD_human