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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RAB11FIP4-NPLOC4 (FusionGDB2 ID:70721)

Fusion Gene Summary for RAB11FIP4-NPLOC4

check button Fusion gene summary
Fusion gene informationFusion gene name: RAB11FIP4-NPLOC4
Fusion gene ID: 70721
HgeneTgene
Gene symbol

RAB11FIP4

NPLOC4

Gene ID

84440

55666

Gene nameRAB11 family interacting protein 4NPL4 homolog, ubiquitin recognition factor
SynonymsFIP4-Rab11|RAB11-FIP4NPL4
Cytomap

17q11.2

17q25.3

Type of geneprotein-codingprotein-coding
Descriptionrab11 family-interacting protein 4RAB11 family interacting protein 4 (class II)arfophilin-2nuclear protein localization protein 4 homologNPLOC4 ubiquitin recognition factornuclear protein localization 4 homolog
Modification date2020031320200313
UniProtAcc.

Q8TAT6

Ensembl transtripts involved in fusion geneENST00000325874, ENST00000581280, 
ENST00000394744, 		ENST00000331134, 
ENST00000374747, ENST00000539314, 
ENST00000572760, ENST00000573876, 
ENST00000574344, 
Fusion gene scores* DoF score7 X 5 X 6=21015 X 9 X 10=1350
# samples 818
** MAII scorelog2(8/210*10)=-1.39231742277876
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(18/1350*10)=-2.90689059560852
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: RAB11FIP4 [Title/Abstract] AND NPLOC4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRAB11FIP4(29815290)-NPLOC4(79539114), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across RAB11FIP4 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across NPLOC4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4UCECTCGA-A5-A2K2-01ARAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
ChimerDB4UCECTCGA-A5-A2K2-01ARAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
ChimerDB4UCECTCGA-A5-A2K2-01ARAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-


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Fusion Gene ORF analysis for RAB11FIP4-NPLOC4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000325874ENST00000331134RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-3CDSENST00000325874ENST00000374747RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-3CDSENST00000325874ENST00000539314RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-intronENST00000325874ENST00000572760RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-intronENST00000325874ENST00000573876RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-intronENST00000325874ENST00000574344RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-3CDSENST00000581280ENST00000331134RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-3CDSENST00000581280ENST00000374747RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-3CDSENST00000581280ENST00000539314RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-intronENST00000581280ENST00000572760RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-intronENST00000581280ENST00000573876RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
intron-intronENST00000581280ENST00000574344RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
In-frameENST00000394744ENST00000331134RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
In-frameENST00000394744ENST00000374747RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
In-frameENST00000394744ENST00000539314RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
5CDS-intronENST00000394744ENST00000572760RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
5CDS-intronENST00000394744ENST00000573876RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
5CDS-intronENST00000394744ENST00000574344RAB11FIP4chr17

29815290

+NPLOC4chr17

79539114

-
In-frameENST00000325874ENST00000331134RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
In-frameENST00000325874ENST00000374747RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
In-frameENST00000325874ENST00000539314RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
5CDS-intronENST00000325874ENST00000572760RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
5CDS-intronENST00000325874ENST00000573876RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
5CDS-intronENST00000325874ENST00000574344RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-3CDSENST00000581280ENST00000331134RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-3CDSENST00000581280ENST00000374747RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-3CDSENST00000581280ENST00000539314RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-intronENST00000581280ENST00000572760RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-intronENST00000581280ENST00000573876RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-intronENST00000581280ENST00000574344RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-3CDSENST00000394744ENST00000331134RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-3CDSENST00000394744ENST00000374747RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-3CDSENST00000394744ENST00000539314RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-intronENST00000394744ENST00000572760RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-intronENST00000394744ENST00000573876RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-
intron-intronENST00000394744ENST00000574344RAB11FIP4chr17

29761140

+NPLOC4chr17

79539114

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000394744RAB11FIP4chr1729815290+ENST00000331134NPLOC4chr1779539114-319127327818263
ENST00000394744RAB11FIP4chr1729815290+ENST00000374747NPLOC4chr1779539114-440027327845272
ENST00000394744RAB11FIP4chr1729815290+ENST00000539314NPLOC4chr1779539114-125727327845272
ENST00000325874RAB11FIP4chr1729761140+ENST00000331134NPLOC4chr1779539114-34835651151110331
ENST00000325874RAB11FIP4chr1729761140+ENST00000374747NPLOC4chr1779539114-46925651151137340
ENST00000325874RAB11FIP4chr1729761140+ENST00000539314NPLOC4chr1779539114-15495651151137340

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000394744ENST00000331134RAB11FIP4chr1729815290+NPLOC4chr1779539114-0.36223050.6377695
ENST00000394744ENST00000374747RAB11FIP4chr1729815290+NPLOC4chr1779539114-0.266298950.73370105
ENST00000394744ENST00000539314RAB11FIP4chr1729815290+NPLOC4chr1779539114-0.233712930.76628715
ENST00000325874ENST00000331134RAB11FIP4chr1729761140+NPLOC4chr1779539114-0.0067592370.99324083
ENST00000325874ENST00000374747RAB11FIP4chr1729761140+NPLOC4chr1779539114-0.0056822790.9943177
ENST00000325874ENST00000539314RAB11FIP4chr1729761140+NPLOC4chr1779539114-0.0208382440.97916174

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Fusion Genomic Features for RAB11FIP4-NPLOC4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RAB11FIP4-NPLOC4


check button Go to

FGviewer for the breakpoints of chr17:29815290-chr17:79539114

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.NPLOC4

Q8TAT6

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: The ternary complex containing UFD1, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope (By similarity). Acts as a negative regulator of type I interferon production via the complex formed with VCP and UFD1, which binds to DDX58/RIG-I and recruits RNF125 to promote ubiquitination and degradation of DDX58/RIG-I (PubMed:26471729). {ECO:0000250|UniProtKB:Q9ES54, ECO:0000269|PubMed:26471729}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000325874+31562_73112.0638.0Calcium bindingOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000325874+31549_84112.0638.0DomainEF-hand
TgeneNPLOC4chr17:29761140chr17:79539114ENST000003311341117580_608427.0609.0Zinc fingerRanBP2-type
TgeneNPLOC4chr17:29761140chr17:79539114ENST000003747471116580_608427.0618.0Zinc fingerRanBP2-type
TgeneNPLOC4chr17:29815290chr17:79539114ENST000003311341117580_608427.0609.0Zinc fingerRanBP2-type
TgeneNPLOC4chr17:29815290chr17:79539114ENST000003747471116580_608427.0618.0Zinc fingerRanBP2-type

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000394744+11362_730536.0Calcium bindingOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000325874+11562_730638.0Calcium bindingOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000394744+11362_7310.0536.0Calcium bindingOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000325874+315280_617112.0638.0Coiled coilOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000394744+113280_6170536.0Coiled coilOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000325874+115280_6170638.0Coiled coilOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000394744+113280_61710.0536.0Coiled coilOntology_term=ECO:0000255
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000325874+315574_636112.0638.0DomainFIP-RBD
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000394744+11349_840536.0DomainEF-hand
HgeneRAB11FIP4chr17:29761140chr17:79539114ENST00000394744+113574_6360536.0DomainFIP-RBD
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000325874+11549_840638.0DomainEF-hand
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000325874+115574_6360638.0DomainFIP-RBD
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000394744+11349_8410.0536.0DomainEF-hand
HgeneRAB11FIP4chr17:29815290chr17:79539114ENST00000394744+113574_63610.0536.0DomainFIP-RBD
TgeneNPLOC4chr17:29761140chr17:79539114ENST000003311341117226_363427.0609.0DomainMPN
TgeneNPLOC4chr17:29761140chr17:79539114ENST000003747471116226_363427.0618.0DomainMPN
TgeneNPLOC4chr17:29815290chr17:79539114ENST000003311341117226_363427.0609.0DomainMPN
TgeneNPLOC4chr17:29815290chr17:79539114ENST000003747471116226_363427.0618.0DomainMPN


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Fusion Gene Sequence for RAB11FIP4-NPLOC4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000394744_ENST00000331134_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29815290_+_NPLOC4_chr17_79539114_length(transcript)=3191nt_BP=273nt
CGAGTCCCGGGGCCCAGGCGCCTCGTGATGTCACCGCAGCTTGATACAAAGAGCCCTTCGGCCCACGCGGGTCTCCCGGCAACGGGCGGG
GGCGGGGCCGCGCCTTCCACTGGTGCCCAGAAGTGCGAGCGGCAGCGGCGCGGCCGCGATTGTTCCTGCGCTTCGGGGCTGCCCGCCGCG
TCCCCGCGCGCCGCCGACCCGCGCCCGCTGGCTTCCGCGCCTCTGCCGGGGAGCGGCCCGCGGATGCGCACCCCGCCAGCTCTCGGGAGC
CAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCATCATAGACATCACAACAACTTTC
CCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATTGGGTGAGACACAGGACTTCCAT
AGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCTCTTGCTGTTCCTGGTCACCAAT
GAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCTCGCCCAGACATGGAAGAGGTCT
GAGCAGTGGGCCACCATCGAGCAGCTGTGCAGCACAGTTGGCGGGCAGCTCCCAGGTCTCCATGAGTACGGCGCCGTCGGGGGCTCCACA
CACACGGCCACTGCAGCCATGTGGGCCTGTCAGCACTGCACGTTCATGAACCAGCCAGGCACAGGCCACTGCGAGATGTGCAGCCTCCCC
AGGACCTAGGGCGCCTGCCCTCTGCTGGCTAGGACCGGGCCCAGCCCAGCCCTTCCTGAAGCCAGAAGCGTTGCTGAGTGTGTTCCCTGT
AACTGCCCCATAGTGGGCAGCCCTGGAGGAACAAGGGGCTGGCTGTCCTGGGCTCCCTGACCCACTGAAGCTTCTCAGCACGTTCCTCCC
TGGAGAGCGGGCGCCACGGCTGGTATTCTGCAGGCTGAATGCAGTCTCCAGACTGGAAACGCAGAGCGGCTCCTCACGCCTAATCCTGTT
GACAAGTCCCCCGCCGTGTTGGAAAGACCTCTCGCCTCTACGTGGCACCTGGAATTGGGGCGCACAGGGAGGGGCCGATGCTGCCACCAC
CCAGCCTTCTCTTTATTTTCAGTGCTTTTTGTTTGGCCTCCCTGCCCCCATGTTTTTCTGGCTGGGAGCTCTTGGTTACCCCCTTGTCTG
ACTGCTTGGTGGCAGGCACCCTGCCTGTGAGGGCCACTTTCCTCTTCTAGTAGCTGTTGTCTGGTGGGGACGCAGTGGCCCTGGACACGG
CTCCCCTCTGCAGGTCTGCAGGTCGGTTTGCTGCCTGCCCTCCTCCTCTCACCCGATGTCCAGGTGGGATTTTAAAGTCTGCATTGGTTA
TAATAACAGTTATCAGTAATTCCTGCCCAGAAGACTTTTATTTATTTTTTTTTAAGATAAAAACTGCACAAAAGGGGAGTGAGAGAGACT
AGTTTCCACATCCTTCCCTCCTTTAGTGAAGCCCCCGAGGTTGTGTCCAGGGTGATGAGTGTGGACGGGGGCACCAGTCAGTTCTCCCTT
GAAGTAAACCTCAGTGCCTGAGACTTTTCTACCAAGCCACACAGCTGCAGCAACTGCAGATACTGCGGGCTGAGCAGGAGCAGTGGTGGC
GCCTGCCCTGAGGCTGCCCTGCGATGGCCTGGGTGGGAGAGCTGGGTCACCGGTGCCGATGCTCTGGCCCTCCCCAATACGCTGCTTCGT
CCCACTGCACCGCCTGGCTGAGGGCGTTAGGGGCTGTGCCTCTTGTGAGGGCCATTTGGGACCTCCCTGGGGCACTGCACAATTGATAGT
GTACCAATAGAGGGAGACTGGGCGATCTGGAACAGCACGTGGTGGGGTCCTGCTTGTGTGCTCTGCGTTCCTCTGTGGCGTGGCCAGGCC
GGGGCATGGCTCTTACCCGGGGAGTGGTGGGCATCTCGATGCTTCTTTGCCTTAATGATGGCCACATCTGGGCTGCTCTGCACCCACGGG
AGAGGCTGGCCCAGCTGCAGACTGCTTAGGGACTTCTGTGTCCATCCTGGGGGGTAAGCCCACGTGACCCACATTCTTGGCACTATGAAC
AGAGAACATTTGCCTGTTGGCTTCTGAAGTGGTCAGGGCCATGGCTGACACCTCCAGGTCCGCCTGGCATGGGACACCAAGTGGAAGGCC
CAAGCAGCTCATCTGCTCTTGGGACCAGGGGCCAGTTGGGTTGGGTCTGGTCACGGCAGAGCTATTGTGGAGGGTCAGGAAGGGTGGAGA
GGAGCTGGGTTGAAGCGGACTGCTGCGGATGCAACTCCCAGCTTGCCCACCGCGGGCTGTCTGCTCTCCCTCCTAGCAGCTGTCACACTG
AAGTTTTGTCCTCTGCTGTCTCCTCTGGTCCTGAGATGAGCTGTGAGCCTAGGTGGCCAAGGCTTCCTGCATTGCTTCCCTGTGAGTCCA
AGGCCTTCCCCCACCACTGGGCAGAGGCTGGACAGCACGGACTTCTAGAGAGAGCCGCGTTGCCAGTTCCTCTCCCACTCGCTCGTCCTT
ATCCACCACGCTATTATAGTTTCCGTTGTCCTCCACCAGCATTTCCCTTACTCTGAAGTTCCGGCATTCACATCATTCATGTTTTCTTTT
GTCTTTTAGCTAAAGGAAAAGCATTGGCGATTTGTCTGATTCTGGTTTTGAGTTACTCTTTGTTCAGTAATGCACTTTATTTTATTGTCC
AAAGAGAGTCAGAGCTAAGCATACAGGCTTGGGGGTGAGCCCTGCTGTGAGAGTTCAGGCCCTGGGAGGCTCAGCCACCTCCTCTTGTGG
GAAGGAGGTCTCAGCCCCACCTCGCATCTTCACCTGCCCTTGGTGTGGACACACCCTCTCATGCTACCAGCACCATAATCCAGTGGGGGT
GACTGGGTGCACACCTGCCCAGGTGAACACAGCGGCTGCCAGTCTCCTGGTCCCGAGAGGAGGTGGGGCCTGGCCCTGGCTCCCTCCAAC
CAGCTGCTCCTGGGACACAGGTGCTCCTGCTTCGGCTCTGTTTCGGCTCACAGGTGTGCATCACTGGGCTTGGATTTGCATTACATTGAC

>In-frame_ENST00000394744_ENST00000331134_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29815290_+_NPLOC4_chr17_79539114_length(amino acids)=263AA_start in transcript=27_stop in transcript=818
MSPQLDTKSPSAHAGLPATGGGGAAPSTGAQKCERQRRGRDCSCASGLPAASPRAADPRPLASAPLPGSGPRMRTPPALGSQDVDKFGNE
ITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSI

--------------------------------------------------------------
>In-frame_ENST00000394744_ENST00000374747_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29815290_+_NPLOC4_chr17_79539114_length(transcript)=4400nt_BP=273nt
CGAGTCCCGGGGCCCAGGCGCCTCGTGATGTCACCGCAGCTTGATACAAAGAGCCCTTCGGCCCACGCGGGTCTCCCGGCAACGGGCGGG
GGCGGGGCCGCGCCTTCCACTGGTGCCCAGAAGTGCGAGCGGCAGCGGCGCGGCCGCGATTGTTCCTGCGCTTCGGGGCTGCCCGCCGCG
TCCCCGCGCGCCGCCGACCCGCGCCCGCTGGCTTCCGCGCCTCTGCCGGGGAGCGGCCCGCGGATGCGCACCCCGCCAGCTCTCGGGAGC
CAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCATCATAGACATCACAACAACTTTC
CCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATTGGGTGAGACACAGGACTTCCAT
AGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCTCTTGCTGTTCCTGGTCACCAAT
GAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCTCGCCCAGACATGGAAGAGGTCT
GAGCAGTGGGCCACCATCGAGCAGCTGTGCAGTGAGTACCCCCACCCCCTGCCCCGGCACCCCGTGGCTGGGGCCGGAGAGCAGCCCACT
CTGCACAGCTCCCCACTGCCGGTGGTGCCCTGGATTCCGCACCCAGCTGCATCCTGGCAGGTGCCATCGGCAATGCAACGAGTAGAGACT
CGGCCTCCCTGCCAGGCACGTGGCAGGCTCCGGTGATGGAGCAGACATGTTGTCCAGGCCGTACGTCTTAGGTACACAGCCCTGTAAATT
TTATAAACCTGTACATCAGAGATACTAATCTCCAGGCATCCTAGGAGCACTTTGAACATCATTGTCTTAAGAGAATCAGAAACTTTATGG
AAGCGCCGGAAGCGTGGGACCTTTTGGTCTCCTTGAGAATTTCCCTTTAGTGCTTAAAGCTGTAAGGAGGAGAAGCCTGCAGCATCCATG
TTGTTGCTGGTGGACACTACGGAACGGACCGCAGGCATTGCGTGTCTTCCGGACCCTCAGTCACCAGGTCCTGAACGATTCCCCACTCGT
GAGAACCTTCTGTCAGCATTGCTGCAGGGACTCCTCACGCACCGTGGTGCCTCGTGCAGCCCGAGTGCCCTGAGTCCCTGCAGCTGAGAG
CACCAGAGTGCCCGGGAGCTACGGCCCTGGACAAATGCTAGAATCCTTCTGTTAACACAGCCTTCAAAAGACACATCAAACACCTTTATA
CCATTTCCTGTTTTTTTTTTTTTTTTTGAGACGGAGTTTGGCTCTTGTCACCCAGGCTGGAGTGTGGTGGCGTGATCTTGCCTCACTGCA
ACCTCCACCTCCTGGGTTCAAACGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCATGCCTGGATAATTT
TTGTATTCTTAGTAGAGCCAGGGTTTCACCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCTTGCCTCTGCCTCCCAG
AGTGTTGGGATTACAGGTGTGAGCCACCACGCCCAGCCGAGGTTTTCTTTTCACACAATTCTTTGTTTATTATTTTTATTTTTGTAGAGA
CAGGGTCTCACTCTATTGCCGAGGCTGGAGTGCAGTTGCACAATCGTAACTCACTGCAGCCTCAAACTCCAGGCTCAAGTGATCTTTCTG
CTTCAGCCTGCTGAGTAACTGGGACCACAGGCTTGCAACACCACACCCAGCTAATTCTTGGGGCTTTGTTGTTGCTTTTTATTTGTTTGT
TTTTTAAAAATAATTTTAACTTATTTTAGATTCACAGGGTACATGTGCAGGTTTGTCACCTGGGTATATTGCCTGATGCTGAGGTTGGGG
TATGATTGATCACATCACCCAGGTACTACACATAGTACCTAATAGTTTTTCAGCCCGCCCTGCTCTTTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTTGAGCTGGAGCCTCACCCTGTCTCCCAGGCTGGAGTGCAGTGGCGCAATCTTAGCTCACTGCAAACTCTGCCTCCT
GGGTTGAAGCAATTCCCCTCCCTCAGCCTCCCGAGTAGCTGGGATTACAGATGTGTACCACCACACCTGGCGTTGCCATCTTTATGTACG
TGAGTACCCATGTTTAGCTCCCACTTATAAATGAAAACATGTAGTATTTGGTTTGCTGTTCCTGCATTAGTTTGCTTAGAATAATGGCCT
TCAACTGCATCCATGTTGCTGCAAAGGACATGATTTCATTCCTTTTTATGGCTGCAAAATTTTTTAATATTTTTGTATCAATGAGGTCTC
ACTGTGTTGCCCAGACTGGTCTCAAACTTTGGCCTCAAGCATTCCTTGCACCTCAGCCTCACAAAGTCCTGAGATTATACCTGGGAGCCA
CTGCACCCAGCCCTTTGATGCAGTTCTAACAATGACACCAGTCTTTTTTTTTTTTTTCTTTTTTGTTTCCCTTTTAGAGACAGGGTTTCA
CTCTGTTGCCTAGGCTGGAGTGCAGTGGAGTGATCATAGCTCACTACAGCCTTCAATTCCTGAGCTCAAGCGATCCTCCTGCATCAGCTT
TCGGAGTACCTAGGAGTATAAACATGAGCCACTACACCCAACTAATGTTTTTGGTTGGTGTTTTTTTTTTTTCTTTAAGAGATAGGGTTG
GCCGGGCCCGGTGGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACAACGTCAAGGGATTGAGACCATC
CTGGCCAACATGGTGAAACCCCATTTCTGTTAAAACTACAAAAATTAGCTGGGCATGGTGGCGAGCGCCTGTAATCCCAGCTACTCAGGA
GGCTGAGGCAGGAGAATCACTTGACCCAGGAAGCGTAGGTTGTAGTGAGCTGAGATCGTGCCACTGTACTCCAGCCTGGGCGACAGAGCA
AGACTCTGTCTCAAAAAAAAAAAAAAGATGTGGTCTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTAGGCTCAAGTGATCTTCCTGCC
TTGGTTCCCAAAGTGCTGAGATTACAGCTGTGAGCCACTGCACCTGACCTTTTTTTTTTCCCCCCTCCTTTTTTTTTTGAGACAGGTTCT
CACTCTGTCACCCAGGCTGAAGTGCAGTGGCATTTGAGGTCAGTCTCACCTTGACCTCCCCAGGCTCAAACAATCCTCCCGCCTCAGCCT
CCTGAGCAGCTGGGACTACAAGCATGTGCCACCATCCCTGGCTGATTTTTTAAATTTGTTGTAGAGATGAGGTCTCACTATGTTGCCCAG
GCTGGTCTTGAACTCTTGGGCCCAAGCGATCCTCCCGCCTCAGTGCTGAGATTGCAGTGGTAAGCCACCATGTCCAGCCAACTCTTTAAT
AATAGGCAGTTCTGACTGGTGTAAGTTCTGACTGGTATCTCACTGTGGTTTTAATTTGCATCTCTGATGATTAGTGATGTTGGGCATTTT
TTCATGGGTTTTTTGTTTGTTTGTTTTGAGACAAAGTCTTGTTCTGTTGCCCAGGCTGGAGTGCAGTAGTGTGATCTCAGCTCACTGCAG
CCTCCACCTCCCGGGTTCAAGCCATTGTCCAGCCTCTGCCTCCTAAGTAGCTGGAATTACAGGTGGCTGCCACCACACCCAGCTAATTTT
TTTAGTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTCGGCTTCCCA
AAGTGCTGGGATTATAGGTGTGAGCCACCGCGCCCGGCCCTCATGGGTTGTTTTGTTTTGTTTTGAGACGGAATCTCACCCTGTCACCCA
GGCTGCAGTGCAATCTCATGATCTCCACTTACTGCAACCTCCACGTCCTGGGTTCAAGTGATACTCCTGCCTCAGCCTCCCGAGTAGCTG
GGACTACAGGCGTGCACCCACGCCTGGCTAATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTGGAACTC
CTGACCTCAGGTGATCCACCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGACGTGTATACACAAGACACAAAGATCAGCTCAGGATGG
GTCATAGGCCTAATGGTAAAAGGTAAAACTATGAAGCAGGCTGGGCATGATGTCTCATAGCTATAATCCTAACACTCTAGGAGGCCAAAG

>In-frame_ENST00000394744_ENST00000374747_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29815290_+_NPLOC4_chr17_79539114_length(amino acids)=272AA_start in transcript=27_stop in transcript=845
MSPQLDTKSPSAHAGLPATGGGGAAPSTGAQKCERQRRGRDCSCASGLPAASPRAADPRPLASAPLPGSGPRMRTPPALGSQDVDKFGNE
ITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSI
SLLLEAVRTRNEELAQTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSAMQRVETRPPCQARGR

--------------------------------------------------------------
>In-frame_ENST00000394744_ENST00000539314_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29815290_+_NPLOC4_chr17_79539114_length(transcript)=1257nt_BP=273nt
CGAGTCCCGGGGCCCAGGCGCCTCGTGATGTCACCGCAGCTTGATACAAAGAGCCCTTCGGCCCACGCGGGTCTCCCGGCAACGGGCGGG
GGCGGGGCCGCGCCTTCCACTGGTGCCCAGAAGTGCGAGCGGCAGCGGCGCGGCCGCGATTGTTCCTGCGCTTCGGGGCTGCCCGCCGCG
TCCCCGCGCGCCGCCGACCCGCGCCCGCTGGCTTCCGCGCCTCTGCCGGGGAGCGGCCCGCGGATGCGCACCCCGCCAGCTCTCGGGAGC
CAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCATCATAGACATCACAACAACTTTC
CCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATTGGGTGAGACACAGGACTTCCAT
AGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCTCTTGCTGTTCCTGGTCACCAAT
GAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCTCGCCCAGACATGGAAGAGGTCT
GAGCAGTGGGCCACCATCGAGCAGCTGTGCAGTGAGTACCCCCACCCCCTGCCCCGGCACCCCGTGGCTGGGGCCGGAGAGCAGCCCACT
CTGCACAGCTCCCCACTGCCGGTGGTGCCCTGGATTCCGCACCCAGCTGCATCCTGGCAGGTGCCATCGGCAATGCAACGAGTAGAGACT
CGGCCTCCCTGCCAGGCACGTGGCAGGCTCCGGTGATGGAGCAGACATGTTGTCCAGGCCGTACGTCTTAGGTACACAGCCCTGTAAATT
TTATAAACCTGTACATCAGAGATACTAATCTCCAGGCATCCTAGGAGCACTTTGAACATCATTGTCTTAAGAGAATCAGAAACTTTATGG
AAGCGCCGGAAGCGTGGGACCTTTTGGTCTCCTTGAGAATTTCCCTTTAGTGCTTAAAGCTGTAAGGAGGAGAAGCCTGCAGCATCCATG
TTGTTGCTGGTGGACACTACGGAACGGACCGCAGGCATTGCGTGTCTTCCGGACCCTCAGTCACCAGGTCCTGAACGATTCCCCACTCGT

>In-frame_ENST00000394744_ENST00000539314_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29815290_+_NPLOC4_chr17_79539114_length(amino acids)=272AA_start in transcript=27_stop in transcript=845
MSPQLDTKSPSAHAGLPATGGGGAAPSTGAQKCERQRRGRDCSCASGLPAASPRAADPRPLASAPLPGSGPRMRTPPALGSQDVDKFGNE
ITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSI
SLLLEAVRTRNEELAQTWKRSEQWATIEQLCSEYPHPLPRHPVAGAGEQPTLHSSPLPVVPWIPHPAASWQVPSAMQRVETRPPCQARGR

--------------------------------------------------------------
>In-frame_ENST00000325874_ENST00000331134_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29761140_+_NPLOC4_chr17_79539114_length(transcript)=3483nt_BP=565nt
CCTTCCCCTCCCCACTCTTCTCCTTCCCTCCCCTCCCCTCCCTTCCCCTCCGGAGCGGCTGGGGCTGCGGCGCCGCTGCTGACACGGATC
GGCCGCGGCCGCCACCGGGCGGAGGCTGCGCGGCGCAGACCCAGACGGGCGGCCCCGGAGGGCGCGCGGCGATGGCGGCGGCGGGCAGGC
GGCGGGCGCGGCGGGCGAGGGGTCCGGGCTGAGCTGCGGGCCGGCCCGGATGGCGGGCGGCGCGGGCTGGTCGGGCGCCCCCGCGGCTCT
GCTGCGCTCCGTGCGCCGCCTGCGCGAGGTGTTCGAGGTGTGCGGCCGCGACCCCGACGGCTTCCTGCGCGTGGAGCGCGTCGCGGCGCT
CGGACTGCGCTTCGGCCAGGGCGAGGAGGTGGAAAAACTTGTGAAATATTTGGATCCCAACGACCTGGGGAGAATCAACTTCAAGGACTT
TTGCCGGGGGGTGTTCGCCATGAAAGGGTGCGAGGAGCTGCTGAAGGATGTGCTGTCGGTGGAGAGCGCGGGGACGCTGCCGTGCGCGCC
AGAGATCCCAGACTGCGTGGAGCAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCAT
CATAGACATCACAACAACTTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATT
GGGTGAGACACAGGACTTCCATAGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCT
CTTGCTGTTCCTGGTCACCAATGAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCT
CGCCCAGACATGGAAGAGGTCTGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGCACAGTTGGCGGGCAGCTCCCAGGTCTCCATGAGTA
CGGCGCCGTCGGGGGCTCCACACACACGGCCACTGCAGCCATGTGGGCCTGTCAGCACTGCACGTTCATGAACCAGCCAGGCACAGGCCA
CTGCGAGATGTGCAGCCTCCCCAGGACCTAGGGCGCCTGCCCTCTGCTGGCTAGGACCGGGCCCAGCCCAGCCCTTCCTGAAGCCAGAAG
CGTTGCTGAGTGTGTTCCCTGTAACTGCCCCATAGTGGGCAGCCCTGGAGGAACAAGGGGCTGGCTGTCCTGGGCTCCCTGACCCACTGA
AGCTTCTCAGCACGTTCCTCCCTGGAGAGCGGGCGCCACGGCTGGTATTCTGCAGGCTGAATGCAGTCTCCAGACTGGAAACGCAGAGCG
GCTCCTCACGCCTAATCCTGTTGACAAGTCCCCCGCCGTGTTGGAAAGACCTCTCGCCTCTACGTGGCACCTGGAATTGGGGCGCACAGG
GAGGGGCCGATGCTGCCACCACCCAGCCTTCTCTTTATTTTCAGTGCTTTTTGTTTGGCCTCCCTGCCCCCATGTTTTTCTGGCTGGGAG
CTCTTGGTTACCCCCTTGTCTGACTGCTTGGTGGCAGGCACCCTGCCTGTGAGGGCCACTTTCCTCTTCTAGTAGCTGTTGTCTGGTGGG
GACGCAGTGGCCCTGGACACGGCTCCCCTCTGCAGGTCTGCAGGTCGGTTTGCTGCCTGCCCTCCTCCTCTCACCCGATGTCCAGGTGGG
ATTTTAAAGTCTGCATTGGTTATAATAACAGTTATCAGTAATTCCTGCCCAGAAGACTTTTATTTATTTTTTTTTAAGATAAAAACTGCA
CAAAAGGGGAGTGAGAGAGACTAGTTTCCACATCCTTCCCTCCTTTAGTGAAGCCCCCGAGGTTGTGTCCAGGGTGATGAGTGTGGACGG
GGGCACCAGTCAGTTCTCCCTTGAAGTAAACCTCAGTGCCTGAGACTTTTCTACCAAGCCACACAGCTGCAGCAACTGCAGATACTGCGG
GCTGAGCAGGAGCAGTGGTGGCGCCTGCCCTGAGGCTGCCCTGCGATGGCCTGGGTGGGAGAGCTGGGTCACCGGTGCCGATGCTCTGGC
CCTCCCCAATACGCTGCTTCGTCCCACTGCACCGCCTGGCTGAGGGCGTTAGGGGCTGTGCCTCTTGTGAGGGCCATTTGGGACCTCCCT
GGGGCACTGCACAATTGATAGTGTACCAATAGAGGGAGACTGGGCGATCTGGAACAGCACGTGGTGGGGTCCTGCTTGTGTGCTCTGCGT
TCCTCTGTGGCGTGGCCAGGCCGGGGCATGGCTCTTACCCGGGGAGTGGTGGGCATCTCGATGCTTCTTTGCCTTAATGATGGCCACATC
TGGGCTGCTCTGCACCCACGGGAGAGGCTGGCCCAGCTGCAGACTGCTTAGGGACTTCTGTGTCCATCCTGGGGGGTAAGCCCACGTGAC
CCACATTCTTGGCACTATGAACAGAGAACATTTGCCTGTTGGCTTCTGAAGTGGTCAGGGCCATGGCTGACACCTCCAGGTCCGCCTGGC
ATGGGACACCAAGTGGAAGGCCCAAGCAGCTCATCTGCTCTTGGGACCAGGGGCCAGTTGGGTTGGGTCTGGTCACGGCAGAGCTATTGT
GGAGGGTCAGGAAGGGTGGAGAGGAGCTGGGTTGAAGCGGACTGCTGCGGATGCAACTCCCAGCTTGCCCACCGCGGGCTGTCTGCTCTC
CCTCCTAGCAGCTGTCACACTGAAGTTTTGTCCTCTGCTGTCTCCTCTGGTCCTGAGATGAGCTGTGAGCCTAGGTGGCCAAGGCTTCCT
GCATTGCTTCCCTGTGAGTCCAAGGCCTTCCCCCACCACTGGGCAGAGGCTGGACAGCACGGACTTCTAGAGAGAGCCGCGTTGCCAGTT
CCTCTCCCACTCGCTCGTCCTTATCCACCACGCTATTATAGTTTCCGTTGTCCTCCACCAGCATTTCCCTTACTCTGAAGTTCCGGCATT
CACATCATTCATGTTTTCTTTTGTCTTTTAGCTAAAGGAAAAGCATTGGCGATTTGTCTGATTCTGGTTTTGAGTTACTCTTTGTTCAGT
AATGCACTTTATTTTATTGTCCAAAGAGAGTCAGAGCTAAGCATACAGGCTTGGGGGTGAGCCCTGCTGTGAGAGTTCAGGCCCTGGGAG
GCTCAGCCACCTCCTCTTGTGGGAAGGAGGTCTCAGCCCCACCTCGCATCTTCACCTGCCCTTGGTGTGGACACACCCTCTCATGCTACC
AGCACCATAATCCAGTGGGGGTGACTGGGTGCACACCTGCCCAGGTGAACACAGCGGCTGCCAGTCTCCTGGTCCCGAGAGGAGGTGGGG
CCTGGCCCTGGCTCCCTCCAACCAGCTGCTCCTGGGACACAGGTGCTCCTGCTTCGGCTCTGTTTCGGCTCACAGGTGTGCATCACTGGG

>In-frame_ENST00000325874_ENST00000331134_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29761140_+_NPLOC4_chr17_79539114_length(amino acids)=331AA_start in transcript=115_stop in transcript=1110
MRGADPDGRPRRARGDGGGGQAAGAAGEGSGLSCGPARMAGGAGWSGAPAALLRSVRRLREVFEVCGRDPDGFLRVERVAALGLRFGQGE
EVEKLVKYLDPNDLGRINFKDFCRGVFAMKGCEELLKDVLSVESAGTLPCAPEIPDCVEQDVDKFGNEITQLARPLPVEYLIIDITTTFP
KDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSE

--------------------------------------------------------------
>In-frame_ENST00000325874_ENST00000374747_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29761140_+_NPLOC4_chr17_79539114_length(transcript)=4692nt_BP=565nt
CCTTCCCCTCCCCACTCTTCTCCTTCCCTCCCCTCCCCTCCCTTCCCCTCCGGAGCGGCTGGGGCTGCGGCGCCGCTGCTGACACGGATC
GGCCGCGGCCGCCACCGGGCGGAGGCTGCGCGGCGCAGACCCAGACGGGCGGCCCCGGAGGGCGCGCGGCGATGGCGGCGGCGGGCAGGC
GGCGGGCGCGGCGGGCGAGGGGTCCGGGCTGAGCTGCGGGCCGGCCCGGATGGCGGGCGGCGCGGGCTGGTCGGGCGCCCCCGCGGCTCT
GCTGCGCTCCGTGCGCCGCCTGCGCGAGGTGTTCGAGGTGTGCGGCCGCGACCCCGACGGCTTCCTGCGCGTGGAGCGCGTCGCGGCGCT
CGGACTGCGCTTCGGCCAGGGCGAGGAGGTGGAAAAACTTGTGAAATATTTGGATCCCAACGACCTGGGGAGAATCAACTTCAAGGACTT
TTGCCGGGGGGTGTTCGCCATGAAAGGGTGCGAGGAGCTGCTGAAGGATGTGCTGTCGGTGGAGAGCGCGGGGACGCTGCCGTGCGCGCC
AGAGATCCCAGACTGCGTGGAGCAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCAT
CATAGACATCACAACAACTTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATT
GGGTGAGACACAGGACTTCCATAGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCT
CTTGCTGTTCCTGGTCACCAATGAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCT
CGCCCAGACATGGAAGAGGTCTGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGTGAGTACCCCCACCCCCTGCCCCGGCACCCCGTGGC
TGGGGCCGGAGAGCAGCCCACTCTGCACAGCTCCCCACTGCCGGTGGTGCCCTGGATTCCGCACCCAGCTGCATCCTGGCAGGTGCCATC
GGCAATGCAACGAGTAGAGACTCGGCCTCCCTGCCAGGCACGTGGCAGGCTCCGGTGATGGAGCAGACATGTTGTCCAGGCCGTACGTCT
TAGGTACACAGCCCTGTAAATTTTATAAACCTGTACATCAGAGATACTAATCTCCAGGCATCCTAGGAGCACTTTGAACATCATTGTCTT
AAGAGAATCAGAAACTTTATGGAAGCGCCGGAAGCGTGGGACCTTTTGGTCTCCTTGAGAATTTCCCTTTAGTGCTTAAAGCTGTAAGGA
GGAGAAGCCTGCAGCATCCATGTTGTTGCTGGTGGACACTACGGAACGGACCGCAGGCATTGCGTGTCTTCCGGACCCTCAGTCACCAGG
TCCTGAACGATTCCCCACTCGTGAGAACCTTCTGTCAGCATTGCTGCAGGGACTCCTCACGCACCGTGGTGCCTCGTGCAGCCCGAGTGC
CCTGAGTCCCTGCAGCTGAGAGCACCAGAGTGCCCGGGAGCTACGGCCCTGGACAAATGCTAGAATCCTTCTGTTAACACAGCCTTCAAA
AGACACATCAAACACCTTTATACCATTTCCTGTTTTTTTTTTTTTTTTTGAGACGGAGTTTGGCTCTTGTCACCCAGGCTGGAGTGTGGT
GGCGTGATCTTGCCTCACTGCAACCTCCACCTCCTGGGTTCAAACGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATG
TGCCACCATGCCTGGATAATTTTTGTATTCTTAGTAGAGCCAGGGTTTCACCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTTGTGA
TCTGCTTGCCTCTGCCTCCCAGAGTGTTGGGATTACAGGTGTGAGCCACCACGCCCAGCCGAGGTTTTCTTTTCACACAATTCTTTGTTT
ATTATTTTTATTTTTGTAGAGACAGGGTCTCACTCTATTGCCGAGGCTGGAGTGCAGTTGCACAATCGTAACTCACTGCAGCCTCAAACT
CCAGGCTCAAGTGATCTTTCTGCTTCAGCCTGCTGAGTAACTGGGACCACAGGCTTGCAACACCACACCCAGCTAATTCTTGGGGCTTTG
TTGTTGCTTTTTATTTGTTTGTTTTTTAAAAATAATTTTAACTTATTTTAGATTCACAGGGTACATGTGCAGGTTTGTCACCTGGGTATA
TTGCCTGATGCTGAGGTTGGGGTATGATTGATCACATCACCCAGGTACTACACATAGTACCTAATAGTTTTTCAGCCCGCCCTGCTCTTT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGAGCTGGAGCCTCACCCTGTCTCCCAGGCTGGAGTGCAGTGGCGCAATCTTAG
CTCACTGCAAACTCTGCCTCCTGGGTTGAAGCAATTCCCCTCCCTCAGCCTCCCGAGTAGCTGGGATTACAGATGTGTACCACCACACCT
GGCGTTGCCATCTTTATGTACGTGAGTACCCATGTTTAGCTCCCACTTATAAATGAAAACATGTAGTATTTGGTTTGCTGTTCCTGCATT
AGTTTGCTTAGAATAATGGCCTTCAACTGCATCCATGTTGCTGCAAAGGACATGATTTCATTCCTTTTTATGGCTGCAAAATTTTTTAAT
ATTTTTGTATCAATGAGGTCTCACTGTGTTGCCCAGACTGGTCTCAAACTTTGGCCTCAAGCATTCCTTGCACCTCAGCCTCACAAAGTC
CTGAGATTATACCTGGGAGCCACTGCACCCAGCCCTTTGATGCAGTTCTAACAATGACACCAGTCTTTTTTTTTTTTTTCTTTTTTGTTT
CCCTTTTAGAGACAGGGTTTCACTCTGTTGCCTAGGCTGGAGTGCAGTGGAGTGATCATAGCTCACTACAGCCTTCAATTCCTGAGCTCA
AGCGATCCTCCTGCATCAGCTTTCGGAGTACCTAGGAGTATAAACATGAGCCACTACACCCAACTAATGTTTTTGGTTGGTGTTTTTTTT
TTTTCTTTAAGAGATAGGGTTGGCCGGGCCCGGTGGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACA
ACGTCAAGGGATTGAGACCATCCTGGCCAACATGGTGAAACCCCATTTCTGTTAAAACTACAAAAATTAGCTGGGCATGGTGGCGAGCGC
CTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGACCCAGGAAGCGTAGGTTGTAGTGAGCTGAGATCGTGCCACTGTA
CTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAGATGTGGTCTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCT
AGGCTCAAGTGATCTTCCTGCCTTGGTTCCCAAAGTGCTGAGATTACAGCTGTGAGCCACTGCACCTGACCTTTTTTTTTTCCCCCCTCC
TTTTTTTTTTGAGACAGGTTCTCACTCTGTCACCCAGGCTGAAGTGCAGTGGCATTTGAGGTCAGTCTCACCTTGACCTCCCCAGGCTCA
AACAATCCTCCCGCCTCAGCCTCCTGAGCAGCTGGGACTACAAGCATGTGCCACCATCCCTGGCTGATTTTTTAAATTTGTTGTAGAGAT
GAGGTCTCACTATGTTGCCCAGGCTGGTCTTGAACTCTTGGGCCCAAGCGATCCTCCCGCCTCAGTGCTGAGATTGCAGTGGTAAGCCAC
CATGTCCAGCCAACTCTTTAATAATAGGCAGTTCTGACTGGTGTAAGTTCTGACTGGTATCTCACTGTGGTTTTAATTTGCATCTCTGAT
GATTAGTGATGTTGGGCATTTTTTCATGGGTTTTTTGTTTGTTTGTTTTGAGACAAAGTCTTGTTCTGTTGCCCAGGCTGGAGTGCAGTA
GTGTGATCTCAGCTCACTGCAGCCTCCACCTCCCGGGTTCAAGCCATTGTCCAGCCTCTGCCTCCTAAGTAGCTGGAATTACAGGTGGCT
GCCACCACACCCAGCTAATTTTTTTAGTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTG
ATCCACCCACCTCGGCTTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCGCGCCCGGCCCTCATGGGTTGTTTTGTTTTGTTTTGAGA
CGGAATCTCACCCTGTCACCCAGGCTGCAGTGCAATCTCATGATCTCCACTTACTGCAACCTCCACGTCCTGGGTTCAAGTGATACTCCT
GCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGTGCACCCACGCCTGGCTAATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGT
TGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGACGTGTATACACAAGA
CACAAAGATCAGCTCAGGATGGGTCATAGGCCTAATGGTAAAAGGTAAAACTATGAAGCAGGCTGGGCATGATGTCTCATAGCTATAATC
CTAACACTCTAGGAGGCCAAAGCTGGAGGACACTGTAGCCCAGAAGTGTGAGACCAGCCCACACAGCATAGTGAAGCCCCGTCTGTACAA

>In-frame_ENST00000325874_ENST00000374747_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29761140_+_NPLOC4_chr17_79539114_length(amino acids)=340AA_start in transcript=115_stop in transcript=1137
MRGADPDGRPRRARGDGGGGQAAGAAGEGSGLSCGPARMAGGAGWSGAPAALLRSVRRLREVFEVCGRDPDGFLRVERVAALGLRFGQGE
EVEKLVKYLDPNDLGRINFKDFCRGVFAMKGCEELLKDVLSVESAGTLPCAPEIPDCVEQDVDKFGNEITQLARPLPVEYLIIDITTTFP
KDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSE

--------------------------------------------------------------
>In-frame_ENST00000325874_ENST00000539314_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29761140_+_NPLOC4_chr17_79539114_length(transcript)=1549nt_BP=565nt
CCTTCCCCTCCCCACTCTTCTCCTTCCCTCCCCTCCCCTCCCTTCCCCTCCGGAGCGGCTGGGGCTGCGGCGCCGCTGCTGACACGGATC
GGCCGCGGCCGCCACCGGGCGGAGGCTGCGCGGCGCAGACCCAGACGGGCGGCCCCGGAGGGCGCGCGGCGATGGCGGCGGCGGGCAGGC
GGCGGGCGCGGCGGGCGAGGGGTCCGGGCTGAGCTGCGGGCCGGCCCGGATGGCGGGCGGCGCGGGCTGGTCGGGCGCCCCCGCGGCTCT
GCTGCGCTCCGTGCGCCGCCTGCGCGAGGTGTTCGAGGTGTGCGGCCGCGACCCCGACGGCTTCCTGCGCGTGGAGCGCGTCGCGGCGCT
CGGACTGCGCTTCGGCCAGGGCGAGGAGGTGGAAAAACTTGTGAAATATTTGGATCCCAACGACCTGGGGAGAATCAACTTCAAGGACTT
TTGCCGGGGGGTGTTCGCCATGAAAGGGTGCGAGGAGCTGCTGAAGGATGTGCTGTCGGTGGAGAGCGCGGGGACGCTGCCGTGCGCGCC
AGAGATCCCAGACTGCGTGGAGCAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCAT
CATAGACATCACAACAACTTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATT
GGGTGAGACACAGGACTTCCATAGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCT
CTTGCTGTTCCTGGTCACCAATGAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCT
CGCCCAGACATGGAAGAGGTCTGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGTGAGTACCCCCACCCCCTGCCCCGGCACCCCGTGGC
TGGGGCCGGAGAGCAGCCCACTCTGCACAGCTCCCCACTGCCGGTGGTGCCCTGGATTCCGCACCCAGCTGCATCCTGGCAGGTGCCATC
GGCAATGCAACGAGTAGAGACTCGGCCTCCCTGCCAGGCACGTGGCAGGCTCCGGTGATGGAGCAGACATGTTGTCCAGGCCGTACGTCT
TAGGTACACAGCCCTGTAAATTTTATAAACCTGTACATCAGAGATACTAATCTCCAGGCATCCTAGGAGCACTTTGAACATCATTGTCTT
AAGAGAATCAGAAACTTTATGGAAGCGCCGGAAGCGTGGGACCTTTTGGTCTCCTTGAGAATTTCCCTTTAGTGCTTAAAGCTGTAAGGA
GGAGAAGCCTGCAGCATCCATGTTGTTGCTGGTGGACACTACGGAACGGACCGCAGGCATTGCGTGTCTTCCGGACCCTCAGTCACCAGG
TCCTGAACGATTCCCCACTCGTGAGAACCTTCTGTCAGCATTGCTGCAGGGACTCCTCACGCACCGTGGTGCCTCGTGCAGCCCGAGTGC

>In-frame_ENST00000325874_ENST00000539314_TCGA-A5-A2K2-01A_RAB11FIP4_chr17_29761140_+_NPLOC4_chr17_79539114_length(amino acids)=340AA_start in transcript=115_stop in transcript=1137
MRGADPDGRPRRARGDGGGGQAAGAAGEGSGLSCGPARMAGGAGWSGAPAALLRSVRRLREVFEVCGRDPDGFLRVERVAALGLRFGQGE
EVEKLVKYLDPNDLGRINFKDFCRGVFAMKGCEELLKDVLSVESAGTLPCAPEIPDCVEQDVDKFGNEITQLARPLPVEYLIIDITTTFP
KDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSE

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Fusion Gene PPI Analysis for RAB11FIP4-NPLOC4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RAB11FIP4-NPLOC4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RAB11FIP4-NPLOC4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource