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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RAD51AP1-ST8SIA1 (FusionGDB2 ID:71288) |
Fusion Gene Summary for RAD51AP1-ST8SIA1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RAD51AP1-ST8SIA1 | Fusion gene ID: 71288 | Hgene | Tgene | Gene symbol | RAD51AP1 | ST8SIA1 | Gene ID | 10635 | 6489 |
Gene name | RAD51 associated protein 1 | ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 | |
Synonyms | PIR51 | GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI | |
Cytomap | 12p13.32 | 12p12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | RAD51-associated protein 1RAD51-interacting protein | alpha-N-acetylneuraminide alpha-2,8-sialyltransferaseST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 1alpha-2,8-sialyltransferase 8Adisialoganglioside (GD3) synthaseganglioside GD3 synthaseganglioside GT3 synthaseganglioside-specific alpha | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000321524, ENST00000543041, ENST00000228843, ENST00000352618, ENST00000544927, ENST00000544931, | ENST00000396037, ENST00000539510, ENST00000536558, ENST00000404299, ENST00000381424, | |
Fusion gene scores | * DoF score | 5 X 7 X 3=105 | 14 X 11 X 9=1386 |
# samples | 6 | 15 | |
** MAII score | log2(6/105*10)=-0.807354922057604 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/1386*10)=-3.20789285164133 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RAD51AP1 [Title/Abstract] AND ST8SIA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RAD51AP1(4648122)-ST8SIA1(22402032), # samples:4 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RAD51AP1 | GO:0010569 | regulation of double-strand break repair via homologous recombination | 23754376 |
Hgene | RAD51AP1 | GO:0071479 | cellular response to ionizing radiation | 23754376 |
Fusion gene breakpoints across RAD51AP1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across ST8SIA1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LGG | TCGA-CS-4943-01A | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
ChimerDB4 | LGG | TCGA-CS-4943 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
ChimerDB4 | LGG | TCGA-CS-4943 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
ChimerDB4 | LGG | TCGA-CS-4943-01A | RAD51AP1 | chr12 | 4648122 | - | ST8SIA1 | chr12 | 22402032 | - |
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Fusion Gene ORF analysis for RAD51AP1-ST8SIA1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000321524 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000321524 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000321524 | ENST00000536558 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000321524 | ENST00000404299 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000321524 | ENST00000381424 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5UTR-3CDS | ENST00000543041 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5UTR-3CDS | ENST00000543041 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5UTR-intron | ENST00000543041 | ENST00000536558 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5UTR-intron | ENST00000543041 | ENST00000404299 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5UTR-intron | ENST00000543041 | ENST00000381424 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000228843 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000228843 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000228843 | ENST00000536558 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000228843 | ENST00000404299 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000228843 | ENST00000381424 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000352618 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000352618 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000352618 | ENST00000536558 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000352618 | ENST00000404299 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000352618 | ENST00000381424 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000544927 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
In-frame | ENST00000544927 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000544927 | ENST00000536558 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000544927 | ENST00000404299 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
5CDS-intron | ENST00000544927 | ENST00000381424 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
intron-3CDS | ENST00000544931 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
intron-3CDS | ENST00000544931 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
intron-intron | ENST00000544931 | ENST00000536558 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
intron-intron | ENST00000544931 | ENST00000404299 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
intron-intron | ENST00000544931 | ENST00000381424 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000321524 | RAD51AP1 | chr12 | 4648122 | + | ENST00000396037 | ST8SIA1 | chr12 | 22402032 | - | 8914 | 173 | 144 | 752 | 202 |
ENST00000321524 | RAD51AP1 | chr12 | 4648122 | + | ENST00000539510 | ST8SIA1 | chr12 | 22402032 | - | 1163 | 173 | 144 | 752 | 202 |
ENST00000228843 | RAD51AP1 | chr12 | 4648122 | + | ENST00000396037 | ST8SIA1 | chr12 | 22402032 | - | 8808 | 67 | 38 | 646 | 202 |
ENST00000228843 | RAD51AP1 | chr12 | 4648122 | + | ENST00000539510 | ST8SIA1 | chr12 | 22402032 | - | 1057 | 67 | 38 | 646 | 202 |
ENST00000352618 | RAD51AP1 | chr12 | 4648122 | + | ENST00000396037 | ST8SIA1 | chr12 | 22402032 | - | 8808 | 67 | 38 | 646 | 202 |
ENST00000352618 | RAD51AP1 | chr12 | 4648122 | + | ENST00000539510 | ST8SIA1 | chr12 | 22402032 | - | 1057 | 67 | 38 | 646 | 202 |
ENST00000544927 | RAD51AP1 | chr12 | 4648122 | + | ENST00000396037 | ST8SIA1 | chr12 | 22402032 | - | 8768 | 27 | 10 | 606 | 198 |
ENST00000544927 | RAD51AP1 | chr12 | 4648122 | + | ENST00000539510 | ST8SIA1 | chr12 | 22402032 | - | 1017 | 27 | 10 | 606 | 198 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000321524 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.00714124 | 0.99285877 |
ENST00000321524 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.009417819 | 0.9905821 |
ENST00000228843 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.007049609 | 0.99295044 |
ENST00000228843 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.010208034 | 0.989792 |
ENST00000352618 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.007049609 | 0.99295044 |
ENST00000352618 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.010208034 | 0.989792 |
ENST00000544927 | ENST00000396037 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.006973387 | 0.9930266 |
ENST00000544927 | ENST00000539510 | RAD51AP1 | chr12 | 4648122 | + | ST8SIA1 | chr12 | 22402032 | - | 0.007380979 | 0.992619 |
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Fusion Genomic Features for RAD51AP1-ST8SIA1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RAD51AP1-ST8SIA1 |
Go to FGviewer for the breakpoints of chr12:4648122-chr12:22402032 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | ST8SIA1 | chr12:4648122 | chr12:22402032 | ENST00000396037 | 2 | 5 | 188_190 | 163.66666666666666 | 357.0 | Region | Substrate binding | |
Tgene | ST8SIA1 | chr12:4648122 | chr12:22402032 | ENST00000396037 | 2 | 5 | 274_276 | 163.66666666666666 | 357.0 | Region | Substrate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000228843 | + | 1 | 10 | 304_307 | 5.666666666666667 | 353.0 | Motif | WVPP motif |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000321524 | + | 1 | 9 | 304_307 | 5.666666666666667 | 303.0 | Motif | WVPP motif |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000352618 | + | 1 | 9 | 304_307 | 5.666666666666667 | 336.0 | Motif | WVPP motif |
Tgene | ST8SIA1 | chr12:4648122 | chr12:22402032 | ENST00000396037 | 2 | 5 | 1_29 | 163.66666666666666 | 357.0 | Topological domain | Cytoplasmic | |
Tgene | ST8SIA1 | chr12:4648122 | chr12:22402032 | ENST00000396037 | 2 | 5 | 49_356 | 163.66666666666666 | 357.0 | Topological domain | Lumenal | |
Tgene | ST8SIA1 | chr12:4648122 | chr12:22402032 | ENST00000396037 | 2 | 5 | 30_48 | 163.66666666666666 | 357.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
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Fusion Gene Sequence for RAD51AP1-ST8SIA1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000321524_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=8914nt_BP=173nt ACAGCGCGTGCGCCGCCGCAAGCATGGCTGGTGATGATTGGACGACTGGTAACAGGGGGCGGAGGGCTCCGAAGTCTGGTTTTGGGCGGG AATTGAAACCGCCGCTGAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGATGCAAT CTCCCTCCTTTGTCAAGTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGTGACAGCTAATCCCAGCATAATTCGGCAAAGGTTT CAGAACCTTCTGTGGTCCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAG ACAGGAACAGAGCCATCTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAATCAAACAGTGCTGTTTGCCAACCCCAACTTTCTG CGTAGCATTGGAAAGTTCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCACAGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTC TGTGAAGAGGTGGCCATCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCAGCCCATCAGCCACCACTACTATGACAACGTCTTA CCCTTTTCTGGCTTCCATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCATAAAATCGGTGCACTGAGAATGCAGCTGGACCCA TGTGAAGATACCTCACTCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACTGAACCAGGGTATTTTTGTTAGGTTTTCTATGTGA CTCCAAGAGGGAATGGTCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAACAGGAAAGGAGCAATGAAGATCCAAGCAAAACTTT ACTTTCAGCGTTGGCTTGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTTTATAGCACATGGCAGATTTGCAACTAGTAAAATG CTGGTGAAATGCTGTTGGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAAAACAAGACAGACTCGAGTTGTTAGGGCTGAGGAA CCAATCAAGGTAGAACAAAGAAAATGTTGGGGTAAAAGTGTTGCTGATTGTCAACACAAACTGGCTTAATAATATTAATAAGAACCTGTC TTATTAAGACTGGCTTTAGAACCGTAGGTTTTTTTAAAAAATTATTATTTATTTTTGCCCTCTTTGGGGAAGTGGGTGGGTAGATTTAAA AAATCCCTTCCTGAGTAATAAAGATACAAAATGTTACTGCTGATAATTGTGATTTGTTGAGCCACGTCTATATTAACTATAGCTCCCCTC TATTTTTAAAATTTTACATAAGAATTGCTTCTTCCTCTTTTGTCAAGTCCACAGAGACAATGTGAAGCATTATTGAATTTAGACTGTGTT GCTTCATAGTCTGGATAACAGGAGCCACTTTCCTTCCTCAGAATTTAGGACATAAACCCAATTTTAGGTCTGCATTATGTAAGCCTGTTT GCATTGTCATTTTTATTTTAGTGCAAAAGACTACCAATATGAGTGAATTATTTGTTTGTAAATTGGCATAATTGTCTTCATAATTTAATG TTCAGAAATGCAGTAAAGCACGTTGATGAAAAGCTTAGTCTCTGTGGAAGACAGACCAGAAGACAAATCCCTTTTCTATCTACTGTGGCA TATTCACTGCAAGGTAAAGGACATGTATGCATACATGCAAGAATGAATTGAGCGAAACTTTGAATATGTTTCCTCTTTTGAGCTATTGTT ATTTAGTAGTTACCTAAAAAAGAATACATTTTTACTAGTATACCATTAAAAATGTAAAAGGCTTAACATGTATGCATACATGTAGACACA CATACACACACACAAAGTTAAACAAAGCTCATTACTGTGCAACTATGAAAGCTGAACTCATATGACCTGGTATGGCAAAAATTTGTAACC AGTGTTGGAGAATCACAAATGTGTTATGCACTATCCATTACATGTTGATATAAGACAACCGAGCTCACTGGTTGCCGCACATAATACCCA TAGCAGCACAAGATGCAAGTCTTACCCCCAAATGCTTACCCGGAATGAGCAGAATTGTCTTACTCATCCTGATTTTACCCAAAATCTCAT GAATGGGCTTGCTGTTGAGCGTGGTCACACAAGGTATAGTTTGTACAAGTAAAGAAATGTGAATTAGTAGCTATTTATTTCCTTAGTAGC AGGTAGGACTACTTAGCTTGTTACAACAGCTTTGATACACAGTAAGAAAACTCTACTGACAGATTACAAGCAGCCAAATGTGTTTACATT TCAGAGAAGGGTAAGGGAAGCCTCTCGTTGTCTTCATACTTTGGAATGTCTTAAGCTAAAATGTGACACTAGAGTTCAATTTCTTTTTTA TTTTAAATGTCACTAAATTGTAGGTAAACTGTACCAAAAAGTTCTAGTTTAATTTTAACAGTAAAAACTCAGCATACCATGTTACCACGT AAACAATAATGGCTGGTATTTTCTGTGGGTTAATTTAACATGACATAAACATAGGAAAGCCCTTGGCAAAATTCTACATCATTGAAGTAG ACCATTTCTAAATGCAATTAAATAGTGAGGTTATTATAAAAATTAGAATTTAAAATATGACTTGTTGATAGTGCAGATTATAATGTTACT TAGAAAGTTAAGAATTCGAGAGTAATGATGCTATTGGAGAACTGGTTTGCTATACGGCAGCAAAAACATAATGAGAATGTACCATGAAGA AATTGTGTTAAATATTCACTTTGAGTGAAACTTTAAATATGTTTCCTCTTTTGAGCTACTGTTATTTAGCAGTTACCTAAAAAAGAATAC ATTTTTACTAGTCTACCATTAAAAATATAAAAGGCTTAACAAAAACGCATATAAAAGTTAATAAAATGTTACTCAGATTAGTACTTTAAT TGTTAAAATGTAATTAATGAGCTCCATAGAGCCCATACATCACAGTTCCATTGAAAATATCATCTGGACTAGAATCTCTTAAACCCAGGA AGTGGAGGTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGGGCAAGACCCTGTCTCAAAAAAAAAAAAAAGAAAA GAAAAAGAAAGAAAATATTATGTGGAAATTTTTCATCTTTTTATGATGCCTGGGATAGATTTATGCAGTAGATTTATATATAATGTTTAG TTTACAAACTTGTGAAACTATTTCATGTGGGTTCTGAAAGGCAAAACAGAAATGGCCAGTGCTGGTGATGTTTGATTAGACCAGCTCTTC TCAGCTGGGGTGATTCATTATCCCTCTCTGGTGACATTTGGCAATGTCTGGAGACCAGAGACATTTTTTATTTTCATGACTCAAGGGTGC TAATAGCATGTACTTAGTAGAGGTTAGGGATCCTGCTAAAGATCTTACAATGCACAAGTCAGCCTCTCACAGCAAAATAATTATCCAGGC TGAGATGTCAGTAGTATCAAGGTTGACATCTCAGACCTGGATTAGACCTGGATTAGACCAAAATGAAATTTTGATTGTTCCACCTTGTCT TCACTTAAAGATAGATATACATGCTCACAGCATTCAAAATATGACTACAATTTAATGAAAATATTTTCTTATGGTAGATTACAACTCACT AGATACACCATACATATGCCTTTTGGACATAATTGGTTAGATAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTAGCATGAAGTTAGGCATCTCTATCCTTAACTGTGCTATGTGTTCCTAAGTAAGGACCTCGCTAGAATCATCCTGTAGAGTGCTCTGGA ATACTCTATTATTAAGATCTTCAATTCTAAGCTCCCATTATCTTTCTTTGTTTATCTGAAATTAAGACCTTCAGAATTAGGCCTGGTACT TTTCCAGATTTGATCAGTTACATTTTGATATAACTGACTCTTAAAATTCAGCTTAGAAGACATTCAATAAGAAAATCTTTAATCACTTTT GGTGATGCACCTGCCAAGAGGGGGCATCACTTTGTACCATCAGACTAATTAAAAAAATTGTTGTGTAGTCATAAAAATTAGGCTGATCCA TAGGGGCAAAAGGAAGGGTGAAGAGACTAAAAACTAGTACCCTGATAGAATTTTAGTTTTTATTAGCCTCGATTTGAGAACTGCATTGAT TCCAAAGATCATGAAGGTAGGTGAAGGATTAAGTCATTCCATAATTAAGAAAAGTAATGTTTATATGAAAGATTTTTATATGGACAATGA CTCACAGACACATATGCTTTGTATAGAGGATTTTGCCAAAAGTTTATACAAAATTGCACATCTAAACTGCATAATTCTCATACAAGAAGT TAAGGAAGTGCTCACTGGATTTTGCTTCTGTATAGTTCACTTTTATCTGTCTTCACAAGGGTAGGAAGTAAATGATCTCAAATGGCACAT GTTCAGACAATACTGTGTTTGGCTTTGTGATGTCTCATGTCTTTCTCTTGGCTAAAAAAAATTGTTTAGGCTATATATAACTTGTACCTG AAGCAATCTGGACAACATGGCTTAAAATGGAAAATAACTGAAAAAATCCTGGGATTTTAAATTTGCCAAAAATACCCTTGGATTAGTCAA AGGCTTTACAAGAGTGTTATAGATGATCCAAAATGGAAACAATATTGATAACATTTCTTTTCGTCAGCAGCTACATATTCCAGTTTTATA ACTTTATTATATACATTTTTTGATTATTAATAGAAAGTCAGCCATCCAGAGTTTTAACTTCTGTGGTTGAAATATTGACTTTGTGAAATT TTTCACTGACAAATACTTGTTAGGAGGGACCTAAGGGGGAGGGGAATGTTACCAGTCCACTGAAAACTTTAGGAAATGTTCATTGTGTTG TGTAAATACTTTCCCACCAGCACCAGGTAATATATTCTCTATGTTTGTAGAATTCCAAAGATCAAAAGCTGTAAGGACGTTTATGTGAAC TTGACGCAAACTTGTGGAGGAATAAGGACTGAGAGTAATGTTGTGCTTTTTCTTTATCTTCCCGTCGTATAGGTCGACTCTCAGGTTATA TGACTTTTATTGGGCACACGTCAGGGGTGGAAGTGGTAGAAGTGGGTTAACAATTTCAAGGCCTGGCAACCTAGGTCAAAACCTCTAATA AAGTCAGCAGTAAACATAACTAGCAACTTCATTCCACTATGTGCTAGGAGGAGGGTGAGGCAAGTTGAAAGGAGATGACCCTATCCCCAC ACTCTCAGGATGTAAAAGGGCAGAGTGCTCTCTACCCTTAACCTTGGCTTTTTAGCACCGTCAGTCTCTGTCCTCTCCCAGGAGAGCTGC CTTGGCTCCAGAGTTGAGCTAGTAGCATTGTGACTAGAGAGGTAGTGTGGAAATTCGCTGAGGACCTCAAAATTTTACACTGCCTTAAAC TGTTTTGTTTTTGCTTAAACTCGTGCTGTCTAAATGTGGGTGTTTTGTGGCAGAGTCTGATCACCCCGACCTAGTTATAGCCCTGCCAGT GATTCTAAAGTGGAACTTTTCCCCCTCATTCATATGGATAGTCTGAGTCCTTGAAGCTAGGGAGATATCAAATATTCTACCAGTTCCTAC ATAGCTTCTTTAAAAGTCCTAGAGACTAACTCACAGGAAGTCTGAAGCCCAGAGCGTCTGTTTATAAACTCCTAAATATGAGGCCACAAT ATTTAGGTTGAGCACTAGAAAATTTCTATTTTGCAAGTGGAAGGAGACTTGAATCTATAATTGCTGTAGCTTTTTTTCCCTTCTATCATA AGAAAATGGATACCATCTGCTTTACCCTCAGCCCAGACTTGTCTTTTGAATTTTTTACATACATCTTAGGGGTGAGAGATTGAAACAAGT GCATGAATGAAAAGCTTATTGAAACATAACACAGCCCCTGCTCACCATTTCAGTAAGGGAAAATACATGTTTCTGTTTCCCTCTAATTTG TTTTCTCTGGTGCCAACATTTCTGATTTCTTCTGTCTCTAATACATAAGGAATAAATACCATATTTTAAATTGACTTACATGCCTGCGAG CATTTGCCAGATAATCAAAGCCTATGACTCTAACTTTTTAAAGCACAGAAGAGGAATTATATTTTATGGTCACTCCTCTGTGTTTCTATT GATCTCTATATTGTGCTAAAATTCTTTCAGGTAATTTTTTTCTTGTTGAAGCTGTGGGATATAATCAATGATGCCAAGCTGTCTGAGAAT TTTATAGAATAATATCCAAATATATTGATCCTGCCTCTTTCTGCTTCTATGTAATTAAACTTTCTTTTGATGTTTATTTTTAAAATGTAT GCTTCACACAACACCAATAAACATCTAAGAGATGTGATATAATCCAAGGCAAAGAAAAGTAAGAATCAGTTAATGTCTATTTTATCTGCA CAGCATTACGAACAGAAAATTGTAATAAAAAAAGGTTTAACCAAACTGAAAAAAAGAGAGACAAAATCTTGGTTTTAATTTGAAAAGATG ATTGGGAGTGATCTCAGAAGAGAGTTCAGCAGGAAGCAAGGAAGAGGCTGTTGACCTTGAGTGCAGCCTCAAGAATGGAACCTTTTTGAA ATATTTTAAAGGAAATATCTTGTCATCCAGCTGTTATGGTTAATAATGAATAGTTTTCTCTGGGTGAAGCTTATCCATTGCACACCTGAT GTGCTGGCCCCTGCGATTTCCCCAAATGTTGGAATGTTGCCTGCATAATTTGTGGTAATGGGGGACTGTGTTCCTGCTTTTACCTGGTTA CAAAAAACAAAACAAAACAAAACAAAACAACAAACAGAAAAAAAAAGAGAGAAAAGATGCTAGAGGAAGCAGTGTGACAGACAGATCATG AGATGCTGACGGAGAGAACAGAGTGGTACCTGTTTACCCACTTGGACCATGACAGTATCAAGGCTCCACCCCTTGCTGTCCCTTCCCAAG AGGTGCTCTCCTGGGAGTTTGATCACAGTGAAACAACACTCCCGTTTTCTTTTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTT TTTTTTGTTGAGACAGAGTTTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACCGCAACCTCCGCCTCCCAGG TTCAAGCGATTCTCGTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCTAATTTTGTACTTTTAGTAGAG ATGGGGTTTCTCCATATTGGTCAGGCTGGTCCCGAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACA GGCATAAGCCACCGAGCCCAGCCCCACACTCCTGTTTTCATAGCCCTTTTTTGTCTGTACTTTGGTACATATTCCCCAAATAAGATTATT ATTTACATCTGTCATGATGAGGCAGTGATAGCAGCAAGTGTCACTTTGACCCTCACCCTTGGAAAGTGGGCTATGCATAGCTAGAGTTAG AACAGGAGGTTCTAATCCTGCTTCCACAATTACTTCAGTAACAGGCTTTTGTATCCATGATTACTTAAGCTGACTTAGATGCATTTTCTA CCCTGTATTCTAGTGTACACAACACAAACACACATAAGCCCTTTACCTGTGGAGAAGAGGGAGATGGTTGATTCAGTGGGAGTGGGGAGT GGCAGAGGGTGCCTTAACTTTTTCTGGCTTGACCCCTACTTCCTTATGTGTTTCCTTCATATACCTCTGTCACTTTAGAGATGTAATCAT GTCTGTTCCAAGTTGTATCGTTATTATCAAGAAGTCCTATAAATGTAGCAAATGTGACTATTTTATAGAAATGCACAATAGTTTATAGGC CTTGGAGAAGTCTGATAATAGTATGTAAATATCCTTCATTGAAGTCATAGAACCTTCTAGTAGGAAGCTCCATAGGTGATAACTGCAAGA GGATTAATGTTTGTTTCTCCAGTAAACACCGGAAGCAAGGAATCAATCTGTCACTGTTTATCATTCAGTCTTGAGCACCGTTGGGTGTTG ATAGGTTACTATAGACACTCCCCTTATAATTAATATACAGGACTCACAATTTAGGATGTCTGATGGCCACTAGGGTACATCATAGAGACA CTAGAGAGAAGAGAACAAATATAGCTCCATCAAAAAGCCTGCTTAATCTTTAACAAGTCTGAAATATTACTAAAATTCCAGTTACCGTGC AGCATAGTCAGTCTAAAAAGCACTGGGGAAAAAGGTGTCTTTTTGGTCTCTTTAATTCTATTATGGCACATTTTAATATTATTCCACATG TGTGCAAACTATTTCTCAAGAGCAAAGTTTGAGGCTGGAGTTAAGAAAATAGAAAAATTAAAACATTATTTTTTCTCATATAATATAATC TGACTACTAGTTCATGGATATAATAATTCTGGGAAAAATTTTAGATTAAACTATAAAATTGAAATCACCTTTGAAGAGTATATGGAATTG CTTCTTTCTATTAAAGCCAACCTACATTGGCAAAAAGTGTGGAGAAAATCAGTGTGCTCAATTCTTTTTGTAGAGTTTCATCTAAAATGT TGCAGGTAAAAAAGAAAACTTTAATTGGTACTTTCTACGGTGTGATTAGAAAAATTAGTATCTATCTCTGTTGGTTCTGCTGACTTGCTT CTTTCCACCGAATCTAAATGCAATGTCATAGGAGGAGGTTTGCTGTAAAAACATGTCTTTTTCTTTGGTGTATTCATTGTAATTATGGCT GGCAGTGAGAAGGTTCGGTAAGTCTCAATTTCTCTACCTCCTTTACTTGGAGAAAATTTGTAAATGTACCCTGTGAATAAAATGATTTTT >In-frame_ENST00000321524_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=202AA_start in transcript=144_stop in transcript=752 MKGTMVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGA NQTVLFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYL -------------------------------------------------------------- >In-frame_ENST00000321524_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=1163nt_BP=173nt ACAGCGCGTGCGCCGCCGCAAGCATGGCTGGTGATGATTGGACGACTGGTAACAGGGGGCGGAGGGCTCCGAAGTCTGGTTTTGGGCGGG AATTGAAACCGCCGCTGAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGATGCAAT CTCCCTCCTTTGTCAAGTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGTGACAGCTAATCCCAGCATAATTCGGCAAAGGTTT CAGAACCTTCTGTGGTCCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAG ACAGGAACAGAGCCATCTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAATCAAACAGTGCTGTTTGCCAACCCCAACTTTCTG CGTAGCATTGGAAAGTTCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCACAGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTC TGTGAAGAGGTGGCCATCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCAGCCCATCAGCCACCACTACTATGACAACGTCTTA CCCTTTTCTGGCTTCCATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCATAAAATCGGTGCACTGAGAATGCAGCTGGACCCA TGTGAAGATACCTCACTCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACTGAACCAGGGTATTTTTGTTAGGTTTTCTATGTGA CTCCAAGAGGGAATGGTCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAACAGGAAAGGAGCAATGAAGATCCAAGCAAAACTTT ACTTTCAGCGTTGGCTTGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTTTATAGCACATGGCAGATTTGCAACTAGTAAAATG CTGGTGAAATGCTGTTGGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAAAACAAGACAGACTCGAGTTGTTAGGGCTGAGGAA >In-frame_ENST00000321524_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=202AA_start in transcript=144_stop in transcript=752 MKGTMVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGA NQTVLFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYL -------------------------------------------------------------- >In-frame_ENST00000228843_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=8808nt_BP=67nt GAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGATGCAATCTCCCTCCTTTGTCAA GTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGTGACAGCTAATCCCAGCATAATTCGGCAAAGGTTTCAGAACCTTCTGTGGT CCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGAACAGAGCCAT CTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAATCAAACAGTGCTGTTTGCCAACCCCAACTTTCTGCGTAGCATTGGAAAGT TCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCACAGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTCTGTGAAGAGGTGGCCA TCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCAGCCCATCAGCCACCACTACTATGACAACGTCTTACCCTTTTCTGGCTTCC ATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCATAAAATCGGTGCACTGAGAATGCAGCTGGACCCATGTGAAGATACCTCAC TCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACTGAACCAGGGTATTTTTGTTAGGTTTTCTATGTGACTCCAAGAGGGAATGG TCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAACAGGAAAGGAGCAATGAAGATCCAAGCAAAACTTTACTTTCAGCGTTGGCT TGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTTTATAGCACATGGCAGATTTGCAACTAGTAAAATGCTGGTGAAATGCTGTT GGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAAAACAAGACAGACTCGAGTTGTTAGGGCTGAGGAACCAATCAAGGTAGAAC AAAGAAAATGTTGGGGTAAAAGTGTTGCTGATTGTCAACACAAACTGGCTTAATAATATTAATAAGAACCTGTCTTATTAAGACTGGCTT TAGAACCGTAGGTTTTTTTAAAAAATTATTATTTATTTTTGCCCTCTTTGGGGAAGTGGGTGGGTAGATTTAAAAAATCCCTTCCTGAGT AATAAAGATACAAAATGTTACTGCTGATAATTGTGATTTGTTGAGCCACGTCTATATTAACTATAGCTCCCCTCTATTTTTAAAATTTTA CATAAGAATTGCTTCTTCCTCTTTTGTCAAGTCCACAGAGACAATGTGAAGCATTATTGAATTTAGACTGTGTTGCTTCATAGTCTGGAT AACAGGAGCCACTTTCCTTCCTCAGAATTTAGGACATAAACCCAATTTTAGGTCTGCATTATGTAAGCCTGTTTGCATTGTCATTTTTAT TTTAGTGCAAAAGACTACCAATATGAGTGAATTATTTGTTTGTAAATTGGCATAATTGTCTTCATAATTTAATGTTCAGAAATGCAGTAA AGCACGTTGATGAAAAGCTTAGTCTCTGTGGAAGACAGACCAGAAGACAAATCCCTTTTCTATCTACTGTGGCATATTCACTGCAAGGTA AAGGACATGTATGCATACATGCAAGAATGAATTGAGCGAAACTTTGAATATGTTTCCTCTTTTGAGCTATTGTTATTTAGTAGTTACCTA AAAAAGAATACATTTTTACTAGTATACCATTAAAAATGTAAAAGGCTTAACATGTATGCATACATGTAGACACACATACACACACACAAA GTTAAACAAAGCTCATTACTGTGCAACTATGAAAGCTGAACTCATATGACCTGGTATGGCAAAAATTTGTAACCAGTGTTGGAGAATCAC AAATGTGTTATGCACTATCCATTACATGTTGATATAAGACAACCGAGCTCACTGGTTGCCGCACATAATACCCATAGCAGCACAAGATGC AAGTCTTACCCCCAAATGCTTACCCGGAATGAGCAGAATTGTCTTACTCATCCTGATTTTACCCAAAATCTCATGAATGGGCTTGCTGTT GAGCGTGGTCACACAAGGTATAGTTTGTACAAGTAAAGAAATGTGAATTAGTAGCTATTTATTTCCTTAGTAGCAGGTAGGACTACTTAG CTTGTTACAACAGCTTTGATACACAGTAAGAAAACTCTACTGACAGATTACAAGCAGCCAAATGTGTTTACATTTCAGAGAAGGGTAAGG GAAGCCTCTCGTTGTCTTCATACTTTGGAATGTCTTAAGCTAAAATGTGACACTAGAGTTCAATTTCTTTTTTATTTTAAATGTCACTAA ATTGTAGGTAAACTGTACCAAAAAGTTCTAGTTTAATTTTAACAGTAAAAACTCAGCATACCATGTTACCACGTAAACAATAATGGCTGG TATTTTCTGTGGGTTAATTTAACATGACATAAACATAGGAAAGCCCTTGGCAAAATTCTACATCATTGAAGTAGACCATTTCTAAATGCA ATTAAATAGTGAGGTTATTATAAAAATTAGAATTTAAAATATGACTTGTTGATAGTGCAGATTATAATGTTACTTAGAAAGTTAAGAATT CGAGAGTAATGATGCTATTGGAGAACTGGTTTGCTATACGGCAGCAAAAACATAATGAGAATGTACCATGAAGAAATTGTGTTAAATATT CACTTTGAGTGAAACTTTAAATATGTTTCCTCTTTTGAGCTACTGTTATTTAGCAGTTACCTAAAAAAGAATACATTTTTACTAGTCTAC CATTAAAAATATAAAAGGCTTAACAAAAACGCATATAAAAGTTAATAAAATGTTACTCAGATTAGTACTTTAATTGTTAAAATGTAATTA ATGAGCTCCATAGAGCCCATACATCACAGTTCCATTGAAAATATCATCTGGACTAGAATCTCTTAAACCCAGGAAGTGGAGGTTGCAGTG AGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGGGCAAGACCCTGTCTCAAAAAAAAAAAAAAGAAAAGAAAAAGAAAGAAAAT ATTATGTGGAAATTTTTCATCTTTTTATGATGCCTGGGATAGATTTATGCAGTAGATTTATATATAATGTTTAGTTTACAAACTTGTGAA ACTATTTCATGTGGGTTCTGAAAGGCAAAACAGAAATGGCCAGTGCTGGTGATGTTTGATTAGACCAGCTCTTCTCAGCTGGGGTGATTC ATTATCCCTCTCTGGTGACATTTGGCAATGTCTGGAGACCAGAGACATTTTTTATTTTCATGACTCAAGGGTGCTAATAGCATGTACTTA GTAGAGGTTAGGGATCCTGCTAAAGATCTTACAATGCACAAGTCAGCCTCTCACAGCAAAATAATTATCCAGGCTGAGATGTCAGTAGTA TCAAGGTTGACATCTCAGACCTGGATTAGACCTGGATTAGACCAAAATGAAATTTTGATTGTTCCACCTTGTCTTCACTTAAAGATAGAT ATACATGCTCACAGCATTCAAAATATGACTACAATTTAATGAAAATATTTTCTTATGGTAGATTACAACTCACTAGATACACCATACATA TGCCTTTTGGACATAATTGGTTAGATAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCATGAAGTTAGG CATCTCTATCCTTAACTGTGCTATGTGTTCCTAAGTAAGGACCTCGCTAGAATCATCCTGTAGAGTGCTCTGGAATACTCTATTATTAAG ATCTTCAATTCTAAGCTCCCATTATCTTTCTTTGTTTATCTGAAATTAAGACCTTCAGAATTAGGCCTGGTACTTTTCCAGATTTGATCA GTTACATTTTGATATAACTGACTCTTAAAATTCAGCTTAGAAGACATTCAATAAGAAAATCTTTAATCACTTTTGGTGATGCACCTGCCA AGAGGGGGCATCACTTTGTACCATCAGACTAATTAAAAAAATTGTTGTGTAGTCATAAAAATTAGGCTGATCCATAGGGGCAAAAGGAAG GGTGAAGAGACTAAAAACTAGTACCCTGATAGAATTTTAGTTTTTATTAGCCTCGATTTGAGAACTGCATTGATTCCAAAGATCATGAAG GTAGGTGAAGGATTAAGTCATTCCATAATTAAGAAAAGTAATGTTTATATGAAAGATTTTTATATGGACAATGACTCACAGACACATATG CTTTGTATAGAGGATTTTGCCAAAAGTTTATACAAAATTGCACATCTAAACTGCATAATTCTCATACAAGAAGTTAAGGAAGTGCTCACT GGATTTTGCTTCTGTATAGTTCACTTTTATCTGTCTTCACAAGGGTAGGAAGTAAATGATCTCAAATGGCACATGTTCAGACAATACTGT GTTTGGCTTTGTGATGTCTCATGTCTTTCTCTTGGCTAAAAAAAATTGTTTAGGCTATATATAACTTGTACCTGAAGCAATCTGGACAAC ATGGCTTAAAATGGAAAATAACTGAAAAAATCCTGGGATTTTAAATTTGCCAAAAATACCCTTGGATTAGTCAAAGGCTTTACAAGAGTG TTATAGATGATCCAAAATGGAAACAATATTGATAACATTTCTTTTCGTCAGCAGCTACATATTCCAGTTTTATAACTTTATTATATACAT TTTTTGATTATTAATAGAAAGTCAGCCATCCAGAGTTTTAACTTCTGTGGTTGAAATATTGACTTTGTGAAATTTTTCACTGACAAATAC TTGTTAGGAGGGACCTAAGGGGGAGGGGAATGTTACCAGTCCACTGAAAACTTTAGGAAATGTTCATTGTGTTGTGTAAATACTTTCCCA CCAGCACCAGGTAATATATTCTCTATGTTTGTAGAATTCCAAAGATCAAAAGCTGTAAGGACGTTTATGTGAACTTGACGCAAACTTGTG GAGGAATAAGGACTGAGAGTAATGTTGTGCTTTTTCTTTATCTTCCCGTCGTATAGGTCGACTCTCAGGTTATATGACTTTTATTGGGCA CACGTCAGGGGTGGAAGTGGTAGAAGTGGGTTAACAATTTCAAGGCCTGGCAACCTAGGTCAAAACCTCTAATAAAGTCAGCAGTAAACA TAACTAGCAACTTCATTCCACTATGTGCTAGGAGGAGGGTGAGGCAAGTTGAAAGGAGATGACCCTATCCCCACACTCTCAGGATGTAAA AGGGCAGAGTGCTCTCTACCCTTAACCTTGGCTTTTTAGCACCGTCAGTCTCTGTCCTCTCCCAGGAGAGCTGCCTTGGCTCCAGAGTTG AGCTAGTAGCATTGTGACTAGAGAGGTAGTGTGGAAATTCGCTGAGGACCTCAAAATTTTACACTGCCTTAAACTGTTTTGTTTTTGCTT AAACTCGTGCTGTCTAAATGTGGGTGTTTTGTGGCAGAGTCTGATCACCCCGACCTAGTTATAGCCCTGCCAGTGATTCTAAAGTGGAAC TTTTCCCCCTCATTCATATGGATAGTCTGAGTCCTTGAAGCTAGGGAGATATCAAATATTCTACCAGTTCCTACATAGCTTCTTTAAAAG TCCTAGAGACTAACTCACAGGAAGTCTGAAGCCCAGAGCGTCTGTTTATAAACTCCTAAATATGAGGCCACAATATTTAGGTTGAGCACT AGAAAATTTCTATTTTGCAAGTGGAAGGAGACTTGAATCTATAATTGCTGTAGCTTTTTTTCCCTTCTATCATAAGAAAATGGATACCAT CTGCTTTACCCTCAGCCCAGACTTGTCTTTTGAATTTTTTACATACATCTTAGGGGTGAGAGATTGAAACAAGTGCATGAATGAAAAGCT TATTGAAACATAACACAGCCCCTGCTCACCATTTCAGTAAGGGAAAATACATGTTTCTGTTTCCCTCTAATTTGTTTTCTCTGGTGCCAA CATTTCTGATTTCTTCTGTCTCTAATACATAAGGAATAAATACCATATTTTAAATTGACTTACATGCCTGCGAGCATTTGCCAGATAATC AAAGCCTATGACTCTAACTTTTTAAAGCACAGAAGAGGAATTATATTTTATGGTCACTCCTCTGTGTTTCTATTGATCTCTATATTGTGC TAAAATTCTTTCAGGTAATTTTTTTCTTGTTGAAGCTGTGGGATATAATCAATGATGCCAAGCTGTCTGAGAATTTTATAGAATAATATC CAAATATATTGATCCTGCCTCTTTCTGCTTCTATGTAATTAAACTTTCTTTTGATGTTTATTTTTAAAATGTATGCTTCACACAACACCA ATAAACATCTAAGAGATGTGATATAATCCAAGGCAAAGAAAAGTAAGAATCAGTTAATGTCTATTTTATCTGCACAGCATTACGAACAGA AAATTGTAATAAAAAAAGGTTTAACCAAACTGAAAAAAAGAGAGACAAAATCTTGGTTTTAATTTGAAAAGATGATTGGGAGTGATCTCA GAAGAGAGTTCAGCAGGAAGCAAGGAAGAGGCTGTTGACCTTGAGTGCAGCCTCAAGAATGGAACCTTTTTGAAATATTTTAAAGGAAAT ATCTTGTCATCCAGCTGTTATGGTTAATAATGAATAGTTTTCTCTGGGTGAAGCTTATCCATTGCACACCTGATGTGCTGGCCCCTGCGA TTTCCCCAAATGTTGGAATGTTGCCTGCATAATTTGTGGTAATGGGGGACTGTGTTCCTGCTTTTACCTGGTTACAAAAAACAAAACAAA ACAAAACAAAACAACAAACAGAAAAAAAAAGAGAGAAAAGATGCTAGAGGAAGCAGTGTGACAGACAGATCATGAGATGCTGACGGAGAG AACAGAGTGGTACCTGTTTACCCACTTGGACCATGACAGTATCAAGGCTCCACCCCTTGCTGTCCCTTCCCAAGAGGTGCTCTCCTGGGA GTTTGATCACAGTGAAACAACACTCCCGTTTTCTTTTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGTTGAGACAG AGTTTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCGT GCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCTAATTTTGTACTTTTAGTAGAGATGGGGTTTCTCCATA TTGGTCAGGCTGGTCCCGAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGAG CCCAGCCCCACACTCCTGTTTTCATAGCCCTTTTTTGTCTGTACTTTGGTACATATTCCCCAAATAAGATTATTATTTACATCTGTCATG ATGAGGCAGTGATAGCAGCAAGTGTCACTTTGACCCTCACCCTTGGAAAGTGGGCTATGCATAGCTAGAGTTAGAACAGGAGGTTCTAAT CCTGCTTCCACAATTACTTCAGTAACAGGCTTTTGTATCCATGATTACTTAAGCTGACTTAGATGCATTTTCTACCCTGTATTCTAGTGT ACACAACACAAACACACATAAGCCCTTTACCTGTGGAGAAGAGGGAGATGGTTGATTCAGTGGGAGTGGGGAGTGGCAGAGGGTGCCTTA ACTTTTTCTGGCTTGACCCCTACTTCCTTATGTGTTTCCTTCATATACCTCTGTCACTTTAGAGATGTAATCATGTCTGTTCCAAGTTGT ATCGTTATTATCAAGAAGTCCTATAAATGTAGCAAATGTGACTATTTTATAGAAATGCACAATAGTTTATAGGCCTTGGAGAAGTCTGAT AATAGTATGTAAATATCCTTCATTGAAGTCATAGAACCTTCTAGTAGGAAGCTCCATAGGTGATAACTGCAAGAGGATTAATGTTTGTTT CTCCAGTAAACACCGGAAGCAAGGAATCAATCTGTCACTGTTTATCATTCAGTCTTGAGCACCGTTGGGTGTTGATAGGTTACTATAGAC ACTCCCCTTATAATTAATATACAGGACTCACAATTTAGGATGTCTGATGGCCACTAGGGTACATCATAGAGACACTAGAGAGAAGAGAAC AAATATAGCTCCATCAAAAAGCCTGCTTAATCTTTAACAAGTCTGAAATATTACTAAAATTCCAGTTACCGTGCAGCATAGTCAGTCTAA AAAGCACTGGGGAAAAAGGTGTCTTTTTGGTCTCTTTAATTCTATTATGGCACATTTTAATATTATTCCACATGTGTGCAAACTATTTCT CAAGAGCAAAGTTTGAGGCTGGAGTTAAGAAAATAGAAAAATTAAAACATTATTTTTTCTCATATAATATAATCTGACTACTAGTTCATG GATATAATAATTCTGGGAAAAATTTTAGATTAAACTATAAAATTGAAATCACCTTTGAAGAGTATATGGAATTGCTTCTTTCTATTAAAG CCAACCTACATTGGCAAAAAGTGTGGAGAAAATCAGTGTGCTCAATTCTTTTTGTAGAGTTTCATCTAAAATGTTGCAGGTAAAAAAGAA AACTTTAATTGGTACTTTCTACGGTGTGATTAGAAAAATTAGTATCTATCTCTGTTGGTTCTGCTGACTTGCTTCTTTCCACCGAATCTA AATGCAATGTCATAGGAGGAGGTTTGCTGTAAAAACATGTCTTTTTCTTTGGTGTATTCATTGTAATTATGGCTGGCAGTGAGAAGGTTC >In-frame_ENST00000228843_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=202AA_start in transcript=38_stop in transcript=646 MKGTMVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGA NQTVLFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYL -------------------------------------------------------------- >In-frame_ENST00000228843_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=1057nt_BP=67nt GAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGATGCAATCTCCCTCCTTTGTCAA GTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGTGACAGCTAATCCCAGCATAATTCGGCAAAGGTTTCAGAACCTTCTGTGGT CCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGAACAGAGCCAT CTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAATCAAACAGTGCTGTTTGCCAACCCCAACTTTCTGCGTAGCATTGGAAAGT TCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCACAGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTCTGTGAAGAGGTGGCCA TCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCAGCCCATCAGCCACCACTACTATGACAACGTCTTACCCTTTTCTGGCTTCC ATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCATAAAATCGGTGCACTGAGAATGCAGCTGGACCCATGTGAAGATACCTCAC TCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACTGAACCAGGGTATTTTTGTTAGGTTTTCTATGTGACTCCAAGAGGGAATGG TCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAACAGGAAAGGAGCAATGAAGATCCAAGCAAAACTTTACTTTCAGCGTTGGCT TGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTTTATAGCACATGGCAGATTTGCAACTAGTAAAATGCTGGTGAAATGCTGTT GGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAAAACAAGACAGACTCGAGTTGTTAGGGCTGAGGAACCAATCAAGGTAGAAC >In-frame_ENST00000228843_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=202AA_start in transcript=38_stop in transcript=646 MKGTMVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGA NQTVLFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYL -------------------------------------------------------------- >In-frame_ENST00000352618_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=8808nt_BP=67nt GAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGATGCAATCTCCCTCCTTTGTCAA GTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGTGACAGCTAATCCCAGCATAATTCGGCAAAGGTTTCAGAACCTTCTGTGGT CCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGAACAGAGCCAT CTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAATCAAACAGTGCTGTTTGCCAACCCCAACTTTCTGCGTAGCATTGGAAAGT TCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCACAGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTCTGTGAAGAGGTGGCCA TCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCAGCCCATCAGCCACCACTACTATGACAACGTCTTACCCTTTTCTGGCTTCC ATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCATAAAATCGGTGCACTGAGAATGCAGCTGGACCCATGTGAAGATACCTCAC TCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACTGAACCAGGGTATTTTTGTTAGGTTTTCTATGTGACTCCAAGAGGGAATGG TCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAACAGGAAAGGAGCAATGAAGATCCAAGCAAAACTTTACTTTCAGCGTTGGCT TGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTTTATAGCACATGGCAGATTTGCAACTAGTAAAATGCTGGTGAAATGCTGTT GGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAAAACAAGACAGACTCGAGTTGTTAGGGCTGAGGAACCAATCAAGGTAGAAC AAAGAAAATGTTGGGGTAAAAGTGTTGCTGATTGTCAACACAAACTGGCTTAATAATATTAATAAGAACCTGTCTTATTAAGACTGGCTT TAGAACCGTAGGTTTTTTTAAAAAATTATTATTTATTTTTGCCCTCTTTGGGGAAGTGGGTGGGTAGATTTAAAAAATCCCTTCCTGAGT AATAAAGATACAAAATGTTACTGCTGATAATTGTGATTTGTTGAGCCACGTCTATATTAACTATAGCTCCCCTCTATTTTTAAAATTTTA CATAAGAATTGCTTCTTCCTCTTTTGTCAAGTCCACAGAGACAATGTGAAGCATTATTGAATTTAGACTGTGTTGCTTCATAGTCTGGAT AACAGGAGCCACTTTCCTTCCTCAGAATTTAGGACATAAACCCAATTTTAGGTCTGCATTATGTAAGCCTGTTTGCATTGTCATTTTTAT TTTAGTGCAAAAGACTACCAATATGAGTGAATTATTTGTTTGTAAATTGGCATAATTGTCTTCATAATTTAATGTTCAGAAATGCAGTAA AGCACGTTGATGAAAAGCTTAGTCTCTGTGGAAGACAGACCAGAAGACAAATCCCTTTTCTATCTACTGTGGCATATTCACTGCAAGGTA AAGGACATGTATGCATACATGCAAGAATGAATTGAGCGAAACTTTGAATATGTTTCCTCTTTTGAGCTATTGTTATTTAGTAGTTACCTA AAAAAGAATACATTTTTACTAGTATACCATTAAAAATGTAAAAGGCTTAACATGTATGCATACATGTAGACACACATACACACACACAAA GTTAAACAAAGCTCATTACTGTGCAACTATGAAAGCTGAACTCATATGACCTGGTATGGCAAAAATTTGTAACCAGTGTTGGAGAATCAC AAATGTGTTATGCACTATCCATTACATGTTGATATAAGACAACCGAGCTCACTGGTTGCCGCACATAATACCCATAGCAGCACAAGATGC AAGTCTTACCCCCAAATGCTTACCCGGAATGAGCAGAATTGTCTTACTCATCCTGATTTTACCCAAAATCTCATGAATGGGCTTGCTGTT GAGCGTGGTCACACAAGGTATAGTTTGTACAAGTAAAGAAATGTGAATTAGTAGCTATTTATTTCCTTAGTAGCAGGTAGGACTACTTAG CTTGTTACAACAGCTTTGATACACAGTAAGAAAACTCTACTGACAGATTACAAGCAGCCAAATGTGTTTACATTTCAGAGAAGGGTAAGG GAAGCCTCTCGTTGTCTTCATACTTTGGAATGTCTTAAGCTAAAATGTGACACTAGAGTTCAATTTCTTTTTTATTTTAAATGTCACTAA ATTGTAGGTAAACTGTACCAAAAAGTTCTAGTTTAATTTTAACAGTAAAAACTCAGCATACCATGTTACCACGTAAACAATAATGGCTGG TATTTTCTGTGGGTTAATTTAACATGACATAAACATAGGAAAGCCCTTGGCAAAATTCTACATCATTGAAGTAGACCATTTCTAAATGCA ATTAAATAGTGAGGTTATTATAAAAATTAGAATTTAAAATATGACTTGTTGATAGTGCAGATTATAATGTTACTTAGAAAGTTAAGAATT CGAGAGTAATGATGCTATTGGAGAACTGGTTTGCTATACGGCAGCAAAAACATAATGAGAATGTACCATGAAGAAATTGTGTTAAATATT CACTTTGAGTGAAACTTTAAATATGTTTCCTCTTTTGAGCTACTGTTATTTAGCAGTTACCTAAAAAAGAATACATTTTTACTAGTCTAC CATTAAAAATATAAAAGGCTTAACAAAAACGCATATAAAAGTTAATAAAATGTTACTCAGATTAGTACTTTAATTGTTAAAATGTAATTA ATGAGCTCCATAGAGCCCATACATCACAGTTCCATTGAAAATATCATCTGGACTAGAATCTCTTAAACCCAGGAAGTGGAGGTTGCAGTG AGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGGGCAAGACCCTGTCTCAAAAAAAAAAAAAAGAAAAGAAAAAGAAAGAAAAT ATTATGTGGAAATTTTTCATCTTTTTATGATGCCTGGGATAGATTTATGCAGTAGATTTATATATAATGTTTAGTTTACAAACTTGTGAA ACTATTTCATGTGGGTTCTGAAAGGCAAAACAGAAATGGCCAGTGCTGGTGATGTTTGATTAGACCAGCTCTTCTCAGCTGGGGTGATTC ATTATCCCTCTCTGGTGACATTTGGCAATGTCTGGAGACCAGAGACATTTTTTATTTTCATGACTCAAGGGTGCTAATAGCATGTACTTA GTAGAGGTTAGGGATCCTGCTAAAGATCTTACAATGCACAAGTCAGCCTCTCACAGCAAAATAATTATCCAGGCTGAGATGTCAGTAGTA TCAAGGTTGACATCTCAGACCTGGATTAGACCTGGATTAGACCAAAATGAAATTTTGATTGTTCCACCTTGTCTTCACTTAAAGATAGAT ATACATGCTCACAGCATTCAAAATATGACTACAATTTAATGAAAATATTTTCTTATGGTAGATTACAACTCACTAGATACACCATACATA TGCCTTTTGGACATAATTGGTTAGATAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCATGAAGTTAGG CATCTCTATCCTTAACTGTGCTATGTGTTCCTAAGTAAGGACCTCGCTAGAATCATCCTGTAGAGTGCTCTGGAATACTCTATTATTAAG ATCTTCAATTCTAAGCTCCCATTATCTTTCTTTGTTTATCTGAAATTAAGACCTTCAGAATTAGGCCTGGTACTTTTCCAGATTTGATCA GTTACATTTTGATATAACTGACTCTTAAAATTCAGCTTAGAAGACATTCAATAAGAAAATCTTTAATCACTTTTGGTGATGCACCTGCCA AGAGGGGGCATCACTTTGTACCATCAGACTAATTAAAAAAATTGTTGTGTAGTCATAAAAATTAGGCTGATCCATAGGGGCAAAAGGAAG GGTGAAGAGACTAAAAACTAGTACCCTGATAGAATTTTAGTTTTTATTAGCCTCGATTTGAGAACTGCATTGATTCCAAAGATCATGAAG GTAGGTGAAGGATTAAGTCATTCCATAATTAAGAAAAGTAATGTTTATATGAAAGATTTTTATATGGACAATGACTCACAGACACATATG CTTTGTATAGAGGATTTTGCCAAAAGTTTATACAAAATTGCACATCTAAACTGCATAATTCTCATACAAGAAGTTAAGGAAGTGCTCACT GGATTTTGCTTCTGTATAGTTCACTTTTATCTGTCTTCACAAGGGTAGGAAGTAAATGATCTCAAATGGCACATGTTCAGACAATACTGT GTTTGGCTTTGTGATGTCTCATGTCTTTCTCTTGGCTAAAAAAAATTGTTTAGGCTATATATAACTTGTACCTGAAGCAATCTGGACAAC ATGGCTTAAAATGGAAAATAACTGAAAAAATCCTGGGATTTTAAATTTGCCAAAAATACCCTTGGATTAGTCAAAGGCTTTACAAGAGTG TTATAGATGATCCAAAATGGAAACAATATTGATAACATTTCTTTTCGTCAGCAGCTACATATTCCAGTTTTATAACTTTATTATATACAT TTTTTGATTATTAATAGAAAGTCAGCCATCCAGAGTTTTAACTTCTGTGGTTGAAATATTGACTTTGTGAAATTTTTCACTGACAAATAC TTGTTAGGAGGGACCTAAGGGGGAGGGGAATGTTACCAGTCCACTGAAAACTTTAGGAAATGTTCATTGTGTTGTGTAAATACTTTCCCA CCAGCACCAGGTAATATATTCTCTATGTTTGTAGAATTCCAAAGATCAAAAGCTGTAAGGACGTTTATGTGAACTTGACGCAAACTTGTG GAGGAATAAGGACTGAGAGTAATGTTGTGCTTTTTCTTTATCTTCCCGTCGTATAGGTCGACTCTCAGGTTATATGACTTTTATTGGGCA CACGTCAGGGGTGGAAGTGGTAGAAGTGGGTTAACAATTTCAAGGCCTGGCAACCTAGGTCAAAACCTCTAATAAAGTCAGCAGTAAACA TAACTAGCAACTTCATTCCACTATGTGCTAGGAGGAGGGTGAGGCAAGTTGAAAGGAGATGACCCTATCCCCACACTCTCAGGATGTAAA AGGGCAGAGTGCTCTCTACCCTTAACCTTGGCTTTTTAGCACCGTCAGTCTCTGTCCTCTCCCAGGAGAGCTGCCTTGGCTCCAGAGTTG AGCTAGTAGCATTGTGACTAGAGAGGTAGTGTGGAAATTCGCTGAGGACCTCAAAATTTTACACTGCCTTAAACTGTTTTGTTTTTGCTT AAACTCGTGCTGTCTAAATGTGGGTGTTTTGTGGCAGAGTCTGATCACCCCGACCTAGTTATAGCCCTGCCAGTGATTCTAAAGTGGAAC TTTTCCCCCTCATTCATATGGATAGTCTGAGTCCTTGAAGCTAGGGAGATATCAAATATTCTACCAGTTCCTACATAGCTTCTTTAAAAG TCCTAGAGACTAACTCACAGGAAGTCTGAAGCCCAGAGCGTCTGTTTATAAACTCCTAAATATGAGGCCACAATATTTAGGTTGAGCACT AGAAAATTTCTATTTTGCAAGTGGAAGGAGACTTGAATCTATAATTGCTGTAGCTTTTTTTCCCTTCTATCATAAGAAAATGGATACCAT CTGCTTTACCCTCAGCCCAGACTTGTCTTTTGAATTTTTTACATACATCTTAGGGGTGAGAGATTGAAACAAGTGCATGAATGAAAAGCT TATTGAAACATAACACAGCCCCTGCTCACCATTTCAGTAAGGGAAAATACATGTTTCTGTTTCCCTCTAATTTGTTTTCTCTGGTGCCAA CATTTCTGATTTCTTCTGTCTCTAATACATAAGGAATAAATACCATATTTTAAATTGACTTACATGCCTGCGAGCATTTGCCAGATAATC AAAGCCTATGACTCTAACTTTTTAAAGCACAGAAGAGGAATTATATTTTATGGTCACTCCTCTGTGTTTCTATTGATCTCTATATTGTGC TAAAATTCTTTCAGGTAATTTTTTTCTTGTTGAAGCTGTGGGATATAATCAATGATGCCAAGCTGTCTGAGAATTTTATAGAATAATATC CAAATATATTGATCCTGCCTCTTTCTGCTTCTATGTAATTAAACTTTCTTTTGATGTTTATTTTTAAAATGTATGCTTCACACAACACCA ATAAACATCTAAGAGATGTGATATAATCCAAGGCAAAGAAAAGTAAGAATCAGTTAATGTCTATTTTATCTGCACAGCATTACGAACAGA AAATTGTAATAAAAAAAGGTTTAACCAAACTGAAAAAAAGAGAGACAAAATCTTGGTTTTAATTTGAAAAGATGATTGGGAGTGATCTCA GAAGAGAGTTCAGCAGGAAGCAAGGAAGAGGCTGTTGACCTTGAGTGCAGCCTCAAGAATGGAACCTTTTTGAAATATTTTAAAGGAAAT ATCTTGTCATCCAGCTGTTATGGTTAATAATGAATAGTTTTCTCTGGGTGAAGCTTATCCATTGCACACCTGATGTGCTGGCCCCTGCGA TTTCCCCAAATGTTGGAATGTTGCCTGCATAATTTGTGGTAATGGGGGACTGTGTTCCTGCTTTTACCTGGTTACAAAAAACAAAACAAA ACAAAACAAAACAACAAACAGAAAAAAAAAGAGAGAAAAGATGCTAGAGGAAGCAGTGTGACAGACAGATCATGAGATGCTGACGGAGAG AACAGAGTGGTACCTGTTTACCCACTTGGACCATGACAGTATCAAGGCTCCACCCCTTGCTGTCCCTTCCCAAGAGGTGCTCTCCTGGGA GTTTGATCACAGTGAAACAACACTCCCGTTTTCTTTTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGTTGAGACAG AGTTTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCGT GCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCATGCGCCACCACACCCGGCTAATTTTGTACTTTTAGTAGAGATGGGGTTTCTCCATA TTGGTCAGGCTGGTCCCGAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGAG CCCAGCCCCACACTCCTGTTTTCATAGCCCTTTTTTGTCTGTACTTTGGTACATATTCCCCAAATAAGATTATTATTTACATCTGTCATG ATGAGGCAGTGATAGCAGCAAGTGTCACTTTGACCCTCACCCTTGGAAAGTGGGCTATGCATAGCTAGAGTTAGAACAGGAGGTTCTAAT CCTGCTTCCACAATTACTTCAGTAACAGGCTTTTGTATCCATGATTACTTAAGCTGACTTAGATGCATTTTCTACCCTGTATTCTAGTGT ACACAACACAAACACACATAAGCCCTTTACCTGTGGAGAAGAGGGAGATGGTTGATTCAGTGGGAGTGGGGAGTGGCAGAGGGTGCCTTA ACTTTTTCTGGCTTGACCCCTACTTCCTTATGTGTTTCCTTCATATACCTCTGTCACTTTAGAGATGTAATCATGTCTGTTCCAAGTTGT ATCGTTATTATCAAGAAGTCCTATAAATGTAGCAAATGTGACTATTTTATAGAAATGCACAATAGTTTATAGGCCTTGGAGAAGTCTGAT AATAGTATGTAAATATCCTTCATTGAAGTCATAGAACCTTCTAGTAGGAAGCTCCATAGGTGATAACTGCAAGAGGATTAATGTTTGTTT CTCCAGTAAACACCGGAAGCAAGGAATCAATCTGTCACTGTTTATCATTCAGTCTTGAGCACCGTTGGGTGTTGATAGGTTACTATAGAC ACTCCCCTTATAATTAATATACAGGACTCACAATTTAGGATGTCTGATGGCCACTAGGGTACATCATAGAGACACTAGAGAGAAGAGAAC AAATATAGCTCCATCAAAAAGCCTGCTTAATCTTTAACAAGTCTGAAATATTACTAAAATTCCAGTTACCGTGCAGCATAGTCAGTCTAA AAAGCACTGGGGAAAAAGGTGTCTTTTTGGTCTCTTTAATTCTATTATGGCACATTTTAATATTATTCCACATGTGTGCAAACTATTTCT CAAGAGCAAAGTTTGAGGCTGGAGTTAAGAAAATAGAAAAATTAAAACATTATTTTTTCTCATATAATATAATCTGACTACTAGTTCATG GATATAATAATTCTGGGAAAAATTTTAGATTAAACTATAAAATTGAAATCACCTTTGAAGAGTATATGGAATTGCTTCTTTCTATTAAAG CCAACCTACATTGGCAAAAAGTGTGGAGAAAATCAGTGTGCTCAATTCTTTTTGTAGAGTTTCATCTAAAATGTTGCAGGTAAAAAAGAA AACTTTAATTGGTACTTTCTACGGTGTGATTAGAAAAATTAGTATCTATCTCTGTTGGTTCTGCTGACTTGCTTCTTTCCACCGAATCTA AATGCAATGTCATAGGAGGAGGTTTGCTGTAAAAACATGTCTTTTTCTTTGGTGTATTCATTGTAATTATGGCTGGCAGTGAGAAGGTTC >In-frame_ENST00000352618_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=202AA_start in transcript=38_stop in transcript=646 MKGTMVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGA NQTVLFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYL -------------------------------------------------------------- >In-frame_ENST00000352618_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=1057nt_BP=67nt GAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGATGCAATCTCCCTCCTTTGTCAA GTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGTGACAGCTAATCCCAGCATAATTCGGCAAAGGTTTCAGAACCTTCTGTGGT CCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCACAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGAACAGAGCCAT CTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAATCAAACAGTGCTGTTTGCCAACCCCAACTTTCTGCGTAGCATTGGAAAGT TCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCACAGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTCTGTGAAGAGGTGGCCA TCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCAGCCCATCAGCCACCACTACTATGACAACGTCTTACCCTTTTCTGGCTTCC ATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCATAAAATCGGTGCACTGAGAATGCAGCTGGACCCATGTGAAGATACCTCAC TCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACTGAACCAGGGTATTTTTGTTAGGTTTTCTATGTGACTCCAAGAGGGAATGG TCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAACAGGAAAGGAGCAATGAAGATCCAAGCAAAACTTTACTTTCAGCGTTGGCT TGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTTTATAGCACATGGCAGATTTGCAACTAGTAAAATGCTGGTGAAATGCTGTT GGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAAAACAAGACAGACTCGAGTTGTTAGGGCTGAGGAACCAATCAAGGTAGAAC >In-frame_ENST00000352618_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=202AA_start in transcript=38_stop in transcript=646 MKGTMVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGA NQTVLFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYL -------------------------------------------------------------- >In-frame_ENST00000544927_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=8768nt_BP=27nt GAAAGGGACCATGGTGCGGCCTGTGAGATGCAATCTCCCTCCTTTGTCAAGTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGT GACAGCTAATCCCAGCATAATTCGGCAAAGGTTTCAGAACCTTCTGTGGTCCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCA CAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGAACAGAGCCATCTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAA TCAAACAGTGCTGTTTGCCAACCCCAACTTTCTGCGTAGCATTGGAAAGTTCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCAC AGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTCTGTGAAGAGGTGGCCATCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCA GCCCATCAGCCACCACTACTATGACAACGTCTTACCCTTTTCTGGCTTCCATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCA TAAAATCGGTGCACTGAGAATGCAGCTGGACCCATGTGAAGATACCTCACTCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACT GAACCAGGGTATTTTTGTTAGGTTTTCTATGTGACTCCAAGAGGGAATGGTCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAAC AGGAAAGGAGCAATGAAGATCCAAGCAAAACTTTACTTTCAGCGTTGGCTTGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTT TATAGCACATGGCAGATTTGCAACTAGTAAAATGCTGGTGAAATGCTGTTGGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAA AACAAGACAGACTCGAGTTGTTAGGGCTGAGGAACCAATCAAGGTAGAACAAAGAAAATGTTGGGGTAAAAGTGTTGCTGATTGTCAACA CAAACTGGCTTAATAATATTAATAAGAACCTGTCTTATTAAGACTGGCTTTAGAACCGTAGGTTTTTTTAAAAAATTATTATTTATTTTT GCCCTCTTTGGGGAAGTGGGTGGGTAGATTTAAAAAATCCCTTCCTGAGTAATAAAGATACAAAATGTTACTGCTGATAATTGTGATTTG TTGAGCCACGTCTATATTAACTATAGCTCCCCTCTATTTTTAAAATTTTACATAAGAATTGCTTCTTCCTCTTTTGTCAAGTCCACAGAG ACAATGTGAAGCATTATTGAATTTAGACTGTGTTGCTTCATAGTCTGGATAACAGGAGCCACTTTCCTTCCTCAGAATTTAGGACATAAA CCCAATTTTAGGTCTGCATTATGTAAGCCTGTTTGCATTGTCATTTTTATTTTAGTGCAAAAGACTACCAATATGAGTGAATTATTTGTT TGTAAATTGGCATAATTGTCTTCATAATTTAATGTTCAGAAATGCAGTAAAGCACGTTGATGAAAAGCTTAGTCTCTGTGGAAGACAGAC CAGAAGACAAATCCCTTTTCTATCTACTGTGGCATATTCACTGCAAGGTAAAGGACATGTATGCATACATGCAAGAATGAATTGAGCGAA ACTTTGAATATGTTTCCTCTTTTGAGCTATTGTTATTTAGTAGTTACCTAAAAAAGAATACATTTTTACTAGTATACCATTAAAAATGTA AAAGGCTTAACATGTATGCATACATGTAGACACACATACACACACACAAAGTTAAACAAAGCTCATTACTGTGCAACTATGAAAGCTGAA CTCATATGACCTGGTATGGCAAAAATTTGTAACCAGTGTTGGAGAATCACAAATGTGTTATGCACTATCCATTACATGTTGATATAAGAC AACCGAGCTCACTGGTTGCCGCACATAATACCCATAGCAGCACAAGATGCAAGTCTTACCCCCAAATGCTTACCCGGAATGAGCAGAATT GTCTTACTCATCCTGATTTTACCCAAAATCTCATGAATGGGCTTGCTGTTGAGCGTGGTCACACAAGGTATAGTTTGTACAAGTAAAGAA ATGTGAATTAGTAGCTATTTATTTCCTTAGTAGCAGGTAGGACTACTTAGCTTGTTACAACAGCTTTGATACACAGTAAGAAAACTCTAC TGACAGATTACAAGCAGCCAAATGTGTTTACATTTCAGAGAAGGGTAAGGGAAGCCTCTCGTTGTCTTCATACTTTGGAATGTCTTAAGC TAAAATGTGACACTAGAGTTCAATTTCTTTTTTATTTTAAATGTCACTAAATTGTAGGTAAACTGTACCAAAAAGTTCTAGTTTAATTTT AACAGTAAAAACTCAGCATACCATGTTACCACGTAAACAATAATGGCTGGTATTTTCTGTGGGTTAATTTAACATGACATAAACATAGGA AAGCCCTTGGCAAAATTCTACATCATTGAAGTAGACCATTTCTAAATGCAATTAAATAGTGAGGTTATTATAAAAATTAGAATTTAAAAT ATGACTTGTTGATAGTGCAGATTATAATGTTACTTAGAAAGTTAAGAATTCGAGAGTAATGATGCTATTGGAGAACTGGTTTGCTATACG GCAGCAAAAACATAATGAGAATGTACCATGAAGAAATTGTGTTAAATATTCACTTTGAGTGAAACTTTAAATATGTTTCCTCTTTTGAGC TACTGTTATTTAGCAGTTACCTAAAAAAGAATACATTTTTACTAGTCTACCATTAAAAATATAAAAGGCTTAACAAAAACGCATATAAAA GTTAATAAAATGTTACTCAGATTAGTACTTTAATTGTTAAAATGTAATTAATGAGCTCCATAGAGCCCATACATCACAGTTCCATTGAAA ATATCATCTGGACTAGAATCTCTTAAACCCAGGAAGTGGAGGTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTGACAGG GCAAGACCCTGTCTCAAAAAAAAAAAAAAGAAAAGAAAAAGAAAGAAAATATTATGTGGAAATTTTTCATCTTTTTATGATGCCTGGGAT AGATTTATGCAGTAGATTTATATATAATGTTTAGTTTACAAACTTGTGAAACTATTTCATGTGGGTTCTGAAAGGCAAAACAGAAATGGC CAGTGCTGGTGATGTTTGATTAGACCAGCTCTTCTCAGCTGGGGTGATTCATTATCCCTCTCTGGTGACATTTGGCAATGTCTGGAGACC AGAGACATTTTTTATTTTCATGACTCAAGGGTGCTAATAGCATGTACTTAGTAGAGGTTAGGGATCCTGCTAAAGATCTTACAATGCACA AGTCAGCCTCTCACAGCAAAATAATTATCCAGGCTGAGATGTCAGTAGTATCAAGGTTGACATCTCAGACCTGGATTAGACCTGGATTAG ACCAAAATGAAATTTTGATTGTTCCACCTTGTCTTCACTTAAAGATAGATATACATGCTCACAGCATTCAAAATATGACTACAATTTAAT GAAAATATTTTCTTATGGTAGATTACAACTCACTAGATACACCATACATATGCCTTTTGGACATAATTGGTTAGATAGGAGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCATGAAGTTAGGCATCTCTATCCTTAACTGTGCTATGTGTTCCTAAGTAAGG ACCTCGCTAGAATCATCCTGTAGAGTGCTCTGGAATACTCTATTATTAAGATCTTCAATTCTAAGCTCCCATTATCTTTCTTTGTTTATC TGAAATTAAGACCTTCAGAATTAGGCCTGGTACTTTTCCAGATTTGATCAGTTACATTTTGATATAACTGACTCTTAAAATTCAGCTTAG AAGACATTCAATAAGAAAATCTTTAATCACTTTTGGTGATGCACCTGCCAAGAGGGGGCATCACTTTGTACCATCAGACTAATTAAAAAA ATTGTTGTGTAGTCATAAAAATTAGGCTGATCCATAGGGGCAAAAGGAAGGGTGAAGAGACTAAAAACTAGTACCCTGATAGAATTTTAG TTTTTATTAGCCTCGATTTGAGAACTGCATTGATTCCAAAGATCATGAAGGTAGGTGAAGGATTAAGTCATTCCATAATTAAGAAAAGTA ATGTTTATATGAAAGATTTTTATATGGACAATGACTCACAGACACATATGCTTTGTATAGAGGATTTTGCCAAAAGTTTATACAAAATTG CACATCTAAACTGCATAATTCTCATACAAGAAGTTAAGGAAGTGCTCACTGGATTTTGCTTCTGTATAGTTCACTTTTATCTGTCTTCAC AAGGGTAGGAAGTAAATGATCTCAAATGGCACATGTTCAGACAATACTGTGTTTGGCTTTGTGATGTCTCATGTCTTTCTCTTGGCTAAA AAAAATTGTTTAGGCTATATATAACTTGTACCTGAAGCAATCTGGACAACATGGCTTAAAATGGAAAATAACTGAAAAAATCCTGGGATT TTAAATTTGCCAAAAATACCCTTGGATTAGTCAAAGGCTTTACAAGAGTGTTATAGATGATCCAAAATGGAAACAATATTGATAACATTT CTTTTCGTCAGCAGCTACATATTCCAGTTTTATAACTTTATTATATACATTTTTTGATTATTAATAGAAAGTCAGCCATCCAGAGTTTTA ACTTCTGTGGTTGAAATATTGACTTTGTGAAATTTTTCACTGACAAATACTTGTTAGGAGGGACCTAAGGGGGAGGGGAATGTTACCAGT CCACTGAAAACTTTAGGAAATGTTCATTGTGTTGTGTAAATACTTTCCCACCAGCACCAGGTAATATATTCTCTATGTTTGTAGAATTCC AAAGATCAAAAGCTGTAAGGACGTTTATGTGAACTTGACGCAAACTTGTGGAGGAATAAGGACTGAGAGTAATGTTGTGCTTTTTCTTTA TCTTCCCGTCGTATAGGTCGACTCTCAGGTTATATGACTTTTATTGGGCACACGTCAGGGGTGGAAGTGGTAGAAGTGGGTTAACAATTT CAAGGCCTGGCAACCTAGGTCAAAACCTCTAATAAAGTCAGCAGTAAACATAACTAGCAACTTCATTCCACTATGTGCTAGGAGGAGGGT GAGGCAAGTTGAAAGGAGATGACCCTATCCCCACACTCTCAGGATGTAAAAGGGCAGAGTGCTCTCTACCCTTAACCTTGGCTTTTTAGC ACCGTCAGTCTCTGTCCTCTCCCAGGAGAGCTGCCTTGGCTCCAGAGTTGAGCTAGTAGCATTGTGACTAGAGAGGTAGTGTGGAAATTC GCTGAGGACCTCAAAATTTTACACTGCCTTAAACTGTTTTGTTTTTGCTTAAACTCGTGCTGTCTAAATGTGGGTGTTTTGTGGCAGAGT CTGATCACCCCGACCTAGTTATAGCCCTGCCAGTGATTCTAAAGTGGAACTTTTCCCCCTCATTCATATGGATAGTCTGAGTCCTTGAAG CTAGGGAGATATCAAATATTCTACCAGTTCCTACATAGCTTCTTTAAAAGTCCTAGAGACTAACTCACAGGAAGTCTGAAGCCCAGAGCG TCTGTTTATAAACTCCTAAATATGAGGCCACAATATTTAGGTTGAGCACTAGAAAATTTCTATTTTGCAAGTGGAAGGAGACTTGAATCT ATAATTGCTGTAGCTTTTTTTCCCTTCTATCATAAGAAAATGGATACCATCTGCTTTACCCTCAGCCCAGACTTGTCTTTTGAATTTTTT ACATACATCTTAGGGGTGAGAGATTGAAACAAGTGCATGAATGAAAAGCTTATTGAAACATAACACAGCCCCTGCTCACCATTTCAGTAA GGGAAAATACATGTTTCTGTTTCCCTCTAATTTGTTTTCTCTGGTGCCAACATTTCTGATTTCTTCTGTCTCTAATACATAAGGAATAAA TACCATATTTTAAATTGACTTACATGCCTGCGAGCATTTGCCAGATAATCAAAGCCTATGACTCTAACTTTTTAAAGCACAGAAGAGGAA TTATATTTTATGGTCACTCCTCTGTGTTTCTATTGATCTCTATATTGTGCTAAAATTCTTTCAGGTAATTTTTTTCTTGTTGAAGCTGTG GGATATAATCAATGATGCCAAGCTGTCTGAGAATTTTATAGAATAATATCCAAATATATTGATCCTGCCTCTTTCTGCTTCTATGTAATT AAACTTTCTTTTGATGTTTATTTTTAAAATGTATGCTTCACACAACACCAATAAACATCTAAGAGATGTGATATAATCCAAGGCAAAGAA AAGTAAGAATCAGTTAATGTCTATTTTATCTGCACAGCATTACGAACAGAAAATTGTAATAAAAAAAGGTTTAACCAAACTGAAAAAAAG AGAGACAAAATCTTGGTTTTAATTTGAAAAGATGATTGGGAGTGATCTCAGAAGAGAGTTCAGCAGGAAGCAAGGAAGAGGCTGTTGACC TTGAGTGCAGCCTCAAGAATGGAACCTTTTTGAAATATTTTAAAGGAAATATCTTGTCATCCAGCTGTTATGGTTAATAATGAATAGTTT TCTCTGGGTGAAGCTTATCCATTGCACACCTGATGTGCTGGCCCCTGCGATTTCCCCAAATGTTGGAATGTTGCCTGCATAATTTGTGGT AATGGGGGACTGTGTTCCTGCTTTTACCTGGTTACAAAAAACAAAACAAAACAAAACAAAACAACAAACAGAAAAAAAAAGAGAGAAAAG ATGCTAGAGGAAGCAGTGTGACAGACAGATCATGAGATGCTGACGGAGAGAACAGAGTGGTACCTGTTTACCCACTTGGACCATGACAGT ATCAAGGCTCCACCCCTTGCTGTCCCTTCCCAAGAGGTGCTCTCCTGGGAGTTTGATCACAGTGAAACAACACTCCCGTTTTCTTTTTCC TTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGTTGAGACAGAGTTTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCG TGATCTCGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCATGCGCC ACCACACCCGGCTAATTTTGTACTTTTAGTAGAGATGGGGTTTCTCCATATTGGTCAGGCTGGTCCCGAACTCCTGACCTCAGGTGATCT GCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGAGCCCAGCCCCACACTCCTGTTTTCATAGCCCTTTTTTGTCT GTACTTTGGTACATATTCCCCAAATAAGATTATTATTTACATCTGTCATGATGAGGCAGTGATAGCAGCAAGTGTCACTTTGACCCTCAC CCTTGGAAAGTGGGCTATGCATAGCTAGAGTTAGAACAGGAGGTTCTAATCCTGCTTCCACAATTACTTCAGTAACAGGCTTTTGTATCC ATGATTACTTAAGCTGACTTAGATGCATTTTCTACCCTGTATTCTAGTGTACACAACACAAACACACATAAGCCCTTTACCTGTGGAGAA GAGGGAGATGGTTGATTCAGTGGGAGTGGGGAGTGGCAGAGGGTGCCTTAACTTTTTCTGGCTTGACCCCTACTTCCTTATGTGTTTCCT TCATATACCTCTGTCACTTTAGAGATGTAATCATGTCTGTTCCAAGTTGTATCGTTATTATCAAGAAGTCCTATAAATGTAGCAAATGTG ACTATTTTATAGAAATGCACAATAGTTTATAGGCCTTGGAGAAGTCTGATAATAGTATGTAAATATCCTTCATTGAAGTCATAGAACCTT CTAGTAGGAAGCTCCATAGGTGATAACTGCAAGAGGATTAATGTTTGTTTCTCCAGTAAACACCGGAAGCAAGGAATCAATCTGTCACTG TTTATCATTCAGTCTTGAGCACCGTTGGGTGTTGATAGGTTACTATAGACACTCCCCTTATAATTAATATACAGGACTCACAATTTAGGA TGTCTGATGGCCACTAGGGTACATCATAGAGACACTAGAGAGAAGAGAACAAATATAGCTCCATCAAAAAGCCTGCTTAATCTTTAACAA GTCTGAAATATTACTAAAATTCCAGTTACCGTGCAGCATAGTCAGTCTAAAAAGCACTGGGGAAAAAGGTGTCTTTTTGGTCTCTTTAAT TCTATTATGGCACATTTTAATATTATTCCACATGTGTGCAAACTATTTCTCAAGAGCAAAGTTTGAGGCTGGAGTTAAGAAAATAGAAAA ATTAAAACATTATTTTTTCTCATATAATATAATCTGACTACTAGTTCATGGATATAATAATTCTGGGAAAAATTTTAGATTAAACTATAA AATTGAAATCACCTTTGAAGAGTATATGGAATTGCTTCTTTCTATTAAAGCCAACCTACATTGGCAAAAAGTGTGGAGAAAATCAGTGTG CTCAATTCTTTTTGTAGAGTTTCATCTAAAATGTTGCAGGTAAAAAAGAAAACTTTAATTGGTACTTTCTACGGTGTGATTAGAAAAATT AGTATCTATCTCTGTTGGTTCTGCTGACTTGCTTCTTTCCACCGAATCTAAATGCAATGTCATAGGAGGAGGTTTGCTGTAAAAACATGT CTTTTTCTTTGGTGTATTCATTGTAATTATGGCTGGCAGTGAGAAGGTTCGGTAAGTCTCAATTTCTCTACCTCCTTTACTTGGAGAAAA >In-frame_ENST00000544927_ENST00000396037_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=198AA_start in transcript=10_stop in transcript=606 MVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGANQTV LFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYLHKIG -------------------------------------------------------------- >In-frame_ENST00000544927_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(transcript)=1017nt_BP=27nt GAAAGGGACCATGGTGCGGCCTGTGAGATGCAATCTCCCTCCTTTGTCAAGTGAATACACTAAGGATGTTGGATCCAAAAGTCAGTTAGT GACAGCTAATCCCAGCATAATTCGGCAAAGGTTTCAGAACCTTCTGTGGTCCAGAAAGACATTTGTGGACAACATGAAAATTTATAACCA CAGTTACATCTACATGCCTGCCTTTTCTATGAAGACAGGAACAGAGCCATCTTTGAGGGTTTATTATACACTGTCAGATGTTGGTGCCAA TCAAACAGTGCTGTTTGCCAACCCCAACTTTCTGCGTAGCATTGGAAAGTTCTGGAAAAGTAGAGGAATCCATGCCAAGCGCCTGTCCAC AGGACTTTTTCTGGTGAGCGCAGCTCTGGGTCTCTGTGAAGAGGTGGCCATCTATGGCTTCTGGCCCTTCTCTGTGAATATGCATGAGCA GCCCATCAGCCACCACTACTATGACAACGTCTTACCCTTTTCTGGCTTCCATGCCATGCCCGAGGAATTTCTCCAACTCTGGTATCTTCA TAAAATCGGTGCACTGAGAATGCAGCTGGACCCATGTGAAGATACCTCACTCCAGCCCACTTCCTAGGAACAATGGAAGAAGAAAGGACT GAACCAGGGTATTTTTGTTAGGTTTTCTATGTGACTCCAAGAGGGAATGGTCAAGTTGTTTCATGAGTTTGCATGGGCCCTTGGAAAAAC AGGAAAGGAGCAATGAAGATCCAAGCAAAACTTTACTTTCAGCGTTGGCTTGGAGGACAAATAAGAAATGAAACATCCTATGAAATACTT TATAGCACATGGCAGATTTGCAACTAGTAAAATGCTGGTGAAATGCTGTTGGTAAAGCACATGGTTCAAATCTAGAAGATGCAGTTCAAA AACAAGACAGACTCGAGTTGTTAGGGCTGAGGAACCAATCAAGGTAGAACAAAGAAAATGTTGGGGTAAAAGTGTTGCTGATTGTCAACA >In-frame_ENST00000544927_ENST00000539510_TCGA-CS-4943-01A_RAD51AP1_chr12_4648122_+_ST8SIA1_chr12_22402032_length(amino acids)=198AA_start in transcript=10_stop in transcript=606 MVRPVRCNLPPLSSEYTKDVGSKSQLVTANPSIIRQRFQNLLWSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGANQTV LFANPNFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMHEQPISHHYYDNVLPFSGFHAMPEEFLQLWYLHKIG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RAD51AP1-ST8SIA1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000228843 | + | 1 | 10 | 243_304 | 5.666666666666667 | 353.0 | DNA |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000228843 | + | 1 | 10 | 30_49 | 5.666666666666667 | 353.0 | DNA |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000321524 | + | 1 | 9 | 243_304 | 5.666666666666667 | 303.0 | DNA |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000321524 | + | 1 | 9 | 30_49 | 5.666666666666667 | 303.0 | DNA |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000352618 | + | 1 | 9 | 243_304 | 5.666666666666667 | 336.0 | DNA |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000352618 | + | 1 | 9 | 30_49 | 5.666666666666667 | 336.0 | DNA |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000228843 | + | 1 | 10 | 313_352 | 5.666666666666667 | 353.0 | RAD51 |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000321524 | + | 1 | 9 | 313_352 | 5.666666666666667 | 303.0 | RAD51 |
Hgene | RAD51AP1 | chr12:4648122 | chr12:22402032 | ENST00000352618 | + | 1 | 9 | 313_352 | 5.666666666666667 | 336.0 | RAD51 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RAD51AP1-ST8SIA1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RAD51AP1-ST8SIA1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ST8SIA1 | C0023895 | Liver diseases | 1 | CTD_human |
Tgene | ST8SIA1 | C0086565 | Liver Dysfunction | 1 | CTD_human |
Tgene | ST8SIA1 | C0149504 | Encephalopathy, Toxic | 1 | CTD_human |
Tgene | ST8SIA1 | C0154659 | Toxic Encephalitis | 1 | CTD_human |
Tgene | ST8SIA1 | C0235032 | Neurotoxicity Syndromes | 1 | CTD_human |