|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RAI14-LAPTM4A (FusionGDB2 ID:71420) |
Fusion Gene Summary for RAI14-LAPTM4A |
Fusion gene summary |
Fusion gene information | Fusion gene name: RAI14-LAPTM4A | Fusion gene ID: 71420 | Hgene | Tgene | Gene symbol | RAI14 | LAPTM4A | Gene ID | 26064 | 9741 |
Gene name | retinoic acid induced 14 | lysosomal protein transmembrane 4 alpha | |
Synonyms | NORPEG|RAI13 | HUMORF13|LAPTM4|MBNT|Mtrp | |
Cytomap | 5p13.2 | 2p24.1 | |
Type of gene | protein-coding | protein-coding | |
Description | ankycorbinankyrin repeat and coiled-coil structure-containing proteinnovel retinal pigment epithelial cell proteinretinoic acid-induced protein 14 | lysosomal-associated transmembrane protein 4Agolgi 4-transmembrane-spanning transporter MTPlysosomal-associated protein transmembrane 4 alphamembrane nucleoside transporter | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q15012 | |
Ensembl transtripts involved in fusion gene | ENST00000265109, ENST00000512629, ENST00000428746, ENST00000503673, ENST00000515799, ENST00000506376, ENST00000507276, ENST00000397449, | ENST00000175091, | |
Fusion gene scores | * DoF score | 17 X 11 X 6=1122 | 9 X 7 X 5=315 |
# samples | 17 | 9 | |
** MAII score | log2(17/1122*10)=-2.72246602447109 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/315*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RAI14 [Title/Abstract] AND LAPTM4A [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RAI14(34823850)-LAPTM4A(20237114), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across RAI14 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across LAPTM4A (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS5.0 | N/A | BE930969 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
Top |
Fusion Gene ORF analysis for RAI14-LAPTM4A |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000265109 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
In-frame | ENST00000512629 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
In-frame | ENST00000428746 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
In-frame | ENST00000503673 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
In-frame | ENST00000515799 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
In-frame | ENST00000506376 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
intron-3CDS | ENST00000507276 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
In-frame | ENST00000397449 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000265109 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 3009 | 2146 | 272 | 1408 | 378 |
ENST00000512629 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 2720 | 1857 | 70 | 1119 | 349 |
ENST00000428746 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 2997 | 2134 | 260 | 1396 | 378 |
ENST00000503673 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 3078 | 2215 | 341 | 1477 | 378 |
ENST00000515799 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 3223 | 2360 | 483 | 1622 | 379 |
ENST00000506376 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 2850 | 1987 | 152 | 1249 | 365 |
ENST00000397449 | RAI14 | chr5 | 34823850 | - | ENST00000175091 | LAPTM4A | chr2 | 20237114 | - | 2701 | 1838 | 0 | 1100 | 366 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000265109 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.001873206 | 0.9981268 |
ENST00000512629 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.000919121 | 0.9990809 |
ENST00000428746 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.001873627 | 0.9981263 |
ENST00000503673 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.001955346 | 0.9980446 |
ENST00000515799 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.001597683 | 0.9984023 |
ENST00000506376 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.002204848 | 0.9977952 |
ENST00000397449 | ENST00000175091 | RAI14 | chr5 | 34823850 | - | LAPTM4A | chr2 | 20237114 | - | 0.001584528 | 0.99841547 |
Top |
Fusion Genomic Features for RAI14-LAPTM4A |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for RAI14-LAPTM4A |
Go to FGviewer for the breakpoints of chr5:34823850-chr2:20237114 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | LAPTM4A |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: May function in the transport of nucleosides and/or nucleoside derivatives between the cytosol and the lumen of an intracellular membrane-bound compartment. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | LAPTM4A | chr5:34823850 | chr2:20237114 | ENST00000175091 | 0 | 7 | 226_229 | 0 | 234.0 | Compositional bias | Note=Poly-Pro | |
Tgene | LAPTM4A | chr5:34823850 | chr2:20237114 | ENST00000175091 | 0 | 7 | 108_128 | 0 | 234.0 | Transmembrane | Helical | |
Tgene | LAPTM4A | chr5:34823850 | chr2:20237114 | ENST00000175091 | 0 | 7 | 160_180 | 0 | 234.0 | Transmembrane | Helical | |
Tgene | LAPTM4A | chr5:34823850 | chr2:20237114 | ENST00000175091 | 0 | 7 | 29_49 | 0 | 234.0 | Transmembrane | Helical | |
Tgene | LAPTM4A | chr5:34823850 | chr2:20237114 | ENST00000175091 | 0 | 7 | 82_102 | 0 | 234.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 349_374 | 0 | 981.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 425_947 | 0 | 981.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 349_374 | 0 | 981.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 425_947 | 0 | 981.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 349_374 | 0 | 981.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 425_947 | 0 | 981.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 349_374 | 0 | 973.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 425_947 | 0 | 973.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 349_374 | 0 | 952.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 425_947 | 0 | 952.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 349_374 | 0 | 984.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 425_947 | 0 | 984.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 270_276 | 0 | 981.0 | Motif | Nuclear localization signal |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 270_276 | 0 | 981.0 | Motif | Nuclear localization signal |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 270_276 | 0 | 981.0 | Motif | Nuclear localization signal |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 270_276 | 0 | 973.0 | Motif | Nuclear localization signal |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 270_276 | 0 | 952.0 | Motif | Nuclear localization signal |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 270_276 | 0 | 984.0 | Motif | Nuclear localization signal |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 118_147 | 0 | 981.0 | Repeat | Note=ANK 4 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 151_180 | 0 | 981.0 | Repeat | Note=ANK 5 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 184_213 | 0 | 981.0 | Repeat | Note=ANK 6 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 18_51 | 0 | 981.0 | Repeat | Note=ANK 1 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 217_247 | 0 | 981.0 | Repeat | Note=ANK 7 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 52_81 | 0 | 981.0 | Repeat | Note=ANK 2 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000265109 | - | 1 | 18 | 85_114 | 0 | 981.0 | Repeat | Note=ANK 3 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 118_147 | 0 | 981.0 | Repeat | Note=ANK 4 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 151_180 | 0 | 981.0 | Repeat | Note=ANK 5 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 184_213 | 0 | 981.0 | Repeat | Note=ANK 6 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 18_51 | 0 | 981.0 | Repeat | Note=ANK 1 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 217_247 | 0 | 981.0 | Repeat | Note=ANK 7 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 52_81 | 0 | 981.0 | Repeat | Note=ANK 2 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000428746 | - | 1 | 18 | 85_114 | 0 | 981.0 | Repeat | Note=ANK 3 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 118_147 | 0 | 981.0 | Repeat | Note=ANK 4 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 151_180 | 0 | 981.0 | Repeat | Note=ANK 5 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 184_213 | 0 | 981.0 | Repeat | Note=ANK 6 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 18_51 | 0 | 981.0 | Repeat | Note=ANK 1 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 217_247 | 0 | 981.0 | Repeat | Note=ANK 7 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 52_81 | 0 | 981.0 | Repeat | Note=ANK 2 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000503673 | - | 1 | 19 | 85_114 | 0 | 981.0 | Repeat | Note=ANK 3 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 118_147 | 0 | 973.0 | Repeat | Note=ANK 4 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 151_180 | 0 | 973.0 | Repeat | Note=ANK 5 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 184_213 | 0 | 973.0 | Repeat | Note=ANK 6 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 18_51 | 0 | 973.0 | Repeat | Note=ANK 1 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 217_247 | 0 | 973.0 | Repeat | Note=ANK 7 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 52_81 | 0 | 973.0 | Repeat | Note=ANK 2 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000506376 | - | 1 | 17 | 85_114 | 0 | 973.0 | Repeat | Note=ANK 3 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 118_147 | 0 | 952.0 | Repeat | Note=ANK 4 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 151_180 | 0 | 952.0 | Repeat | Note=ANK 5 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 184_213 | 0 | 952.0 | Repeat | Note=ANK 6 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 18_51 | 0 | 952.0 | Repeat | Note=ANK 1 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 217_247 | 0 | 952.0 | Repeat | Note=ANK 7 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 52_81 | 0 | 952.0 | Repeat | Note=ANK 2 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000512629 | - | 1 | 17 | 85_114 | 0 | 952.0 | Repeat | Note=ANK 3 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 118_147 | 0 | 984.0 | Repeat | Note=ANK 4 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 151_180 | 0 | 984.0 | Repeat | Note=ANK 5 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 184_213 | 0 | 984.0 | Repeat | Note=ANK 6 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 18_51 | 0 | 984.0 | Repeat | Note=ANK 1 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 217_247 | 0 | 984.0 | Repeat | Note=ANK 7 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 52_81 | 0 | 984.0 | Repeat | Note=ANK 2 |
Hgene | RAI14 | chr5:34823850 | chr2:20237114 | ENST00000515799 | - | 1 | 20 | 85_114 | 0 | 984.0 | Repeat | Note=ANK 3 |
Top |
Fusion Gene Sequence for RAI14-LAPTM4A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000265109_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=3009nt_BP=2146nt ATCCAGGTCGGCGGGGGCCGGCGCCCGGCGGCCACGTGGTGGTGCTGCCGCTGCCCCCGCCCCGCCGGCCTAGCCCGGGAGCTCGGCGCC CACTGACCCCCGCAGCGGGGGAGGAGGAGGGACTGCGGCGCAGGAAGCCGAGCAGGAAGCGAGCCCGGCGGCCGCGTTTTCCTGGGGAAG CGGCGGGCGGGGTGGAGCAGCCAGCTGGGTCCGGGGAGCGCCGCCGCCGCCTCGATGGGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAA GGCTGAATGCACTAAACATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGC AGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGA CCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTA CCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTG TCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCA TAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATG GAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAA TTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAA GCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAG AAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAA CTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACA GACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAA AAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCT GTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAA AGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAA AGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAAC CACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCT GGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAG TGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGT CTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCA AGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAAC CTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTA TACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAA GCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTT GAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTT TCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCG GGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATG ATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAA CTGTGTTTGGAACTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGA TTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAA >In-frame_ENST00000265109_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=378AA_start in transcript=272_stop in transcript=1408 MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSE RSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK -------------------------------------------------------------- >In-frame_ENST00000512629_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=2720nt_BP=1857nt AGCTGGGTCCGGGGAGCGCCGCCGCCGCCTCGATGGGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCACTAAACATGAA GAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGC GGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGC AAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCT CGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGC TTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGG GAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAA CAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAA CCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTC TCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGG AAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTAC AGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTT ACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAA GCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTG ATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACC CAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCA AAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAA GAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCA TCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAA AAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCA GAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAA ATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTT TATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACT AAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAG CAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTT CTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGG TATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGT TTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTAT AAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGAC CTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCAAGAATCA >In-frame_ENST00000512629_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=349AA_start in transcript=70_stop in transcript=1119 MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQLSDVSSPRSI -------------------------------------------------------------- >In-frame_ENST00000428746_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=2997nt_BP=2134nt GATGGGGTGAGTGCGCGGCACGGAGTTGGGAGGCTCCCGGCGCGGGGTCCCGGGCTCGTGTCCCCGCCTTTGTGTCTGGAGCTCGGGCGC GGGAGGCGCTGGGGACGGCGCCCGGGCGGAGCGGCTGAGCGGGCTGCAGCCGGGGTCCCGCCACCTCTCCCTGGTCCACCGCCGGCAGCC CACTGTCTGCGGAGAGCAGATCTGGGGACAAGAGGAAGGAGAGGAAGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCAC TAAACATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGA ATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATC TTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCG CCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTG GGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAG ATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCA ATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTG CAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTAT CAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAA CTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCAC TATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACA GTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCC TTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTA CAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGA GAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGA GTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGAC TGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACT CTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGT GTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAA AAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGA ACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGC CGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTT GTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTC AAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTA GGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACT GCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGT AGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGT TTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAA CTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAA AGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCA >In-frame_ENST00000428746_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=378AA_start in transcript=260_stop in transcript=1396 MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSE RSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK -------------------------------------------------------------- >In-frame_ENST00000503673_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=3078nt_BP=2215nt ACTCCCGCTGAGGCTGGGAAGATTGAAAGGGGCCATGGAGAGGCTGCAGTCACAATGAGGCCTCCAGATTCATGTCATCAAAGTGCTTCA TGATGACTGGATTTTCACACCATTTATCCAAGGGCCCTAGTCAATGGCAGCAGCAAGAATGAAAGTAGACACATTGGAAGCTAGAGAGTC ACTGGGTGACTTTTGGAGGTAGCAACAAGCTCATGAAGAAGGCATTCAGTGGCTTGCACTCCCCACCCATCCTCTCAACTACATGCGAAG TTTTCACATCTTGTACATTTCCAAATTTAATGAAAAAGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCACTAAACATGA AGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATG CGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTG CAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATC TCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAG CTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATG GGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGA ACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAA ACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCT CTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAA AACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAA AGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAG GTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTAC ACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGC CCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGAT GCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCA GCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAA AGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGA GAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATC GAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAA GGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGA AATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAAT GCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTA TGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAA GGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCA AGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCT TTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTA TAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTT GTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAA ATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCT CCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCAAGAATCAAA >In-frame_ENST00000503673_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=378AA_start in transcript=341_stop in transcript=1477 MNALNMKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTT GHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHG ADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSE RSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK -------------------------------------------------------------- >In-frame_ENST00000515799_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=3223nt_BP=2360nt GGAGAGGCTGCAGTCACAATGAGGCCTCCAGATTCATGTCATCAAAGTGCTTCATGATGACTGGATTTTCACACCATTTATCCAAGGGCC CTAGTCAATGGCAGCAGCAAGAATGAAAGTAGACACATTGGAAGCTAGAGAGTCACTGGGTGACTTTTGGAGGTAGCAACAAGCTCATGA AGAAGGCATTCAGTGGCTTGCACTCCCCACCCATCCTCTCAACTACATGCGAAGTTTTCACATCTTGTACATTTCCAAATTTAATGAAAA AGGTGTTGAAAAGTCTCCTCTAGAGCTTTGGAAGGCTGAATGCACTAAACATGAAGAGCTTGAAAGCGAAGTTCAGGAAGAGTGACGTAA ATTAAATAAAACTCATAGAGTGCAAAGAGACTTCGACAAAGACAGAAAACTAGCTGTTGGCCAGAGTGAAAGTCCTGGTCATCCGACTTC CGAGAAACCTCCTTCAACCTCATCGTCTGCTGGCTGTATGTTATGCAGCCTACATATCTCCCGTGGCTTTCAGCTAAGGAGAAAAAGACC AATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGG GCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATT ACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGG AAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAA GCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGT CACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGT GAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACAT TATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCA AAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACC CAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAG GCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCT GACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGA TGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAAT CTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAG ATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACT CTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAAC ACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGT CTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGG TCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGC AAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGG AGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTG CCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAAC TTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTT TTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGG GTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCC TGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAA AATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAA TAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTG TGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTG >In-frame_ENST00000515799_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=379AA_start in transcript=483_stop in transcript=1622 MYVMQPTYLPWLSAKEKKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDT TGHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDH GADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISS ERSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQA -------------------------------------------------------------- >In-frame_ENST00000506376_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=2850nt_BP=1987nt GGGAGAAAAACATAGCAGAGGGGTTGTACACGATAATATTTTTTTAAAAGGTCACCCCATAAACCCTTCTATGATCCCAGTCTTGTATTA GCTGCATTCCAGATACTTTGAGCAGAGTTGTGGAGTGGGAGAAATTAATGGAAGGGAATTAGATGGAAGCCAAGACCAATGAGTGGAACA AGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGCCAGTGCCACCA AACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAATGCCTCAGGGTCATGATTACACATGGTGTGG ATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGT CTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTC TCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTACAAAATGGTCACAGTGAGATCT GTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCT CTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCT CAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAAGCAGCATGACC AAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCACCTCCTATCAGTCCTACCCAGTTGAGTGATG TCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTT CTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGATC TTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTACAGATAGGATGATAGATGAACT CAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGT CACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGATGCACTGTCTGA AATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGGATGCACAAAAAGAGAACTCTGTCTCTATCAC AGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAA GGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAAA ACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAAAGAGAAGGTCCATTCAGAGGT TGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGA ACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGA TAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGAAGAAATTC TGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAA AATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCTGTTAAACGTCTTTTTGTTTTTTTGTTAAGTC TTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTTTAATTGGGGGGTGGGAAGGGAAA GAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCATTTTGTTACTTGCTACCCTGAGTACTTTCAG GAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATT GTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTTTGTGATAAGATGATTTAATAAATCTCTTTAA ATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAAATACATCAACAACCGAAACGTGCCGGAGATTGCTGTGTACCCTGCCTT TGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTT >In-frame_ENST00000506376_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=365AA_start in transcript=152_stop in transcript=1249 MEAKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTTGHSALHLAAKNSH HECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTA LMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPP PISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQD -------------------------------------------------------------- >In-frame_ENST00000397449_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(transcript)=2701nt_BP=1838nt ATGGTGAAGGGGAAGACCAATGAGTGGAACAAGAATGATGACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCA CTGCTCGGCAAGAAGGGGGCCAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAA TGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTACATCTCGCAGCCAAGAACAGC CACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAGTGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCG GCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTT CTTGCTGTACAAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAGTGGAAGAACT GCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAGGGTGCAGACCTAAACCTTGTAGATTCTCTT GGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATGCAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTA AAGACCCCAACAAAACCAAAGCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCA CCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGGGAAAGGAATCGGTATTTTTT GCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGACAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTG GATATAAGTTCTGAAGCTGACCAACAAGATCTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAA GATAAATTACAGATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGCTGTACAAAGAAGCCCAGGCTGAGCTGGAGG ATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGAATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGT CCAGGGCTAAAGCAGAAGATGCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGG ATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAA TAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAGCTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTG ATGCAATGGTACCTCGGTCTTCCTATGAAAAACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTG TGAAAGAGAAAGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAATATTCAGACTC TCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGGAAGAACTTGCAGAAATGAAAAGATACGCTG AGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGTACGTTTTGCCAACCTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCAC CACCTCCTTACTTACCTGCCTGAAGAAATTCTGCCTTTGACAATAAATCCTATACCAGCTTTTTGTTTGTTTATGTTACAGAATGCTGCA ATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTTTGTTTAAGCATTTATTTTCAAACACTAAGGAGCTTTTTGACATCT GTTAAACGTCTTTTTGTTTTTTTGTTAAGTCTTTTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTG TTTGCCTTTAATTGGGGGGTGGGAAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATAATCGTTTGCA TTTTGTTACTTGCTACCCTGAGTACTTTCAGGAAGACTGACTTAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTC ATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTATATGTTTCCATCTT TGTGATAAGATGATTTAATAAATCTCTTTAAATACTTAGCTTATCTAATTAACTGTGTTTGGAACTGCTATAAATACATCAACAACCGAA ACGTGCCGGAGATTGCTGTGTACCCTGCCTTTGAAGCACCTCCTCAGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCA GCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGCCTATTTGCCAAGAATCAAAGAATATCTGGATCAACT >In-frame_ENST00000397449_ENST00000175091_BE930969_RAI14_chr5_34823850_-_LAPTM4A_chr2_20237114_length(amino acids)=366AA_start in transcript=0_stop in transcript=1100 MVKGKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTTGHSALHLAAKNS HHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRT ALMLACEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPP PPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQ -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for RAI14-LAPTM4A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for RAI14-LAPTM4A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for RAI14-LAPTM4A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |