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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RARA-C16orf45 (FusionGDB2 ID:71827)

Fusion Gene Summary for RARA-C16orf45

check button Fusion gene summary
Fusion gene informationFusion gene name: RARA-C16orf45
Fusion gene ID: 71827
HgeneTgene
Gene symbol

RARA

C16orf45

Gene ID

5914

89927

Gene nameretinoic acid receptor alphabMERB domain containing 1
SynonymsNR1B1|RARC16orf45|MINP
Cytomap

17q21.2

16p13.11

Type of geneprotein-codingprotein-coding
Descriptionretinoic acid receptor alphaRAR-alphanuclear receptor subfamily 1 group B member 1nucleophosmin-retinoic acid receptor alpha fusion protein NPM-RAR long formretinoic acid nuclear receptor alpha variant 1retinoic acid nuclear receptor alpha variant 2bMERB domain-containing protein 1migration inhibitory proteinuncharacterized protein C16orf45
Modification date2020032720200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000254066, ENST00000394089, 
ENST00000425707, ENST00000394086, 
ENST00000394081, ENST00000420042, 
ENST00000300006, ENST00000566490, 
ENST00000452191, ENST00000561692, 
ENST00000565913, 
Fusion gene scores* DoF score47 X 22 X 8=827214 X 11 X 8=1232
# samples 7416
** MAII scorelog2(74/8272*10)=-3.48263900979862
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(16/1232*10)=-2.94485844580754
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: RARA [Title/Abstract] AND C16orf45 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRARA(38487648)-C16orf45(15609161), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRARA

GO:0007165

signal transduction

2825025

HgeneRARA

GO:0030853

negative regulation of granulocyte differentiation

19917671

HgeneRARA

GO:0032689

negative regulation of interferon-gamma production

18416830

HgeneRARA

GO:0032720

negative regulation of tumor necrosis factor production

18416830

HgeneRARA

GO:0032736

positive regulation of interleukin-13 production

18416830

HgeneRARA

GO:0032753

positive regulation of interleukin-4 production

18416830

HgeneRARA

GO:0032754

positive regulation of interleukin-5 production

18416830

HgeneRARA

GO:0045630

positive regulation of T-helper 2 cell differentiation

18416830

HgeneRARA

GO:0045892

negative regulation of transcription, DNA-templated

20080953

HgeneRARA

GO:0045893

positive regulation of transcription, DNA-templated

18845237|19850744|20080953

HgeneRARA

GO:0045944

positive regulation of transcription by RNA polymerase II

19850744|21131358

HgeneRARA

GO:0071300

cellular response to retinoic acid

19917671

HgeneRARA

GO:0071391

cellular response to estrogen stimulus

20080953


check buttonFusion gene breakpoints across RARA (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across C16orf45 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-AN-A046RARAchr17

38487648

+C16orf45chr16

15609161

+


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Fusion Gene ORF analysis for RARA-C16orf45

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000254066ENST00000300006RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000254066ENST00000566490RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000254066ENST00000452191RARAchr17

38487648

+C16orf45chr16

15609161

+
5CDS-intronENST00000254066ENST00000561692RARAchr17

38487648

+C16orf45chr16

15609161

+
5CDS-intronENST00000254066ENST00000565913RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000394089ENST00000300006RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000394089ENST00000566490RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000394089ENST00000452191RARAchr17

38487648

+C16orf45chr16

15609161

+
5CDS-intronENST00000394089ENST00000561692RARAchr17

38487648

+C16orf45chr16

15609161

+
5CDS-intronENST00000394089ENST00000565913RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000425707ENST00000300006RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000425707ENST00000566490RARAchr17

38487648

+C16orf45chr16

15609161

+
In-frameENST00000425707ENST00000452191RARAchr17

38487648

+C16orf45chr16

15609161

+
5CDS-intronENST00000425707ENST00000561692RARAchr17

38487648

+C16orf45chr16

15609161

+
5CDS-intronENST00000425707ENST00000565913RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000394086ENST00000300006RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000394086ENST00000566490RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000394086ENST00000452191RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-intronENST00000394086ENST00000561692RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-intronENST00000394086ENST00000565913RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000394081ENST00000300006RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000394081ENST00000566490RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000394081ENST00000452191RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-intronENST00000394081ENST00000561692RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-intronENST00000394081ENST00000565913RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000420042ENST00000300006RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000420042ENST00000566490RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-3CDSENST00000420042ENST00000452191RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-intronENST00000420042ENST00000561692RARAchr17

38487648

+C16orf45chr16

15609161

+
intron-intronENST00000420042ENST00000565913RARAchr17

38487648

+C16orf45chr16

15609161

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000254066RARAchr1738487648+ENST00000300006C16orf45chr1615609161+257263314482191247
ENST00000254066RARAchr1738487648+ENST00000566490C16orf45chr1615609161+220263313652108247
ENST00000254066RARAchr1738487648+ENST00000452191C16orf45chr1615609161+238763314482191247
ENST00000394089RARAchr1738487648+ENST00000300006C16orf45chr1615609161+264770815232266247
ENST00000394089RARAchr1738487648+ENST00000566490C16orf45chr1615609161+227770814402183247
ENST00000394089RARAchr1738487648+ENST00000452191C16orf45chr1615609161+246270815232266247
ENST00000425707RARAchr1738487648+ENST00000300006C16orf45chr1615609161+264370415192262247
ENST00000425707RARAchr1738487648+ENST00000566490C16orf45chr1615609161+227370414362179247
ENST00000425707RARAchr1738487648+ENST00000452191C16orf45chr1615609161+245870415192262247

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000254066ENST00000300006RARAchr1738487648+C16orf45chr1615609161+0.0037115260.9962884
ENST00000254066ENST00000566490RARAchr1738487648+C16orf45chr1615609161+0.204242410.79575765
ENST00000254066ENST00000452191RARAchr1738487648+C16orf45chr1615609161+0.0044081140.9955918
ENST00000394089ENST00000300006RARAchr1738487648+C16orf45chr1615609161+0.0026375420.99736243
ENST00000394089ENST00000566490RARAchr1738487648+C16orf45chr1615609161+0.138261850.86173815
ENST00000394089ENST00000452191RARAchr1738487648+C16orf45chr1615609161+0.0030343540.9969657
ENST00000425707ENST00000300006RARAchr1738487648+C16orf45chr1615609161+0.0028640890.9971359
ENST00000425707ENST00000566490RARAchr1738487648+C16orf45chr1615609161+0.186040540.8139595
ENST00000425707ENST00000452191RARAchr1738487648+C16orf45chr1615609161+0.0033048350.99669516

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Fusion Genomic Features for RARA-C16orf45


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
RARAchr1738487648+C16orf45chr1615609161+1.19E-070.9999999
RARAchr1738487648+C16orf45chr1615609161+1.19E-070.9999999

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RARA-C16orf45


check button Go to

FGviewer for the breakpoints of chr17:38487648-chr16:15609161

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+2988_15359.333333333333336463.0DNA bindingNuclear receptor
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+1888_1530458.0DNA bindingNuclear receptor
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+2988_15359.333333333333336463.0DNA bindingNuclear receptor
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+2788_15359.333333333333336366.0DNA bindingNuclear receptor
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+29183_41759.333333333333336463.0DomainNR LBD
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+18183_4170458.0DomainNR LBD
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+29183_41759.333333333333336463.0DomainNR LBD
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+27183_41759.333333333333336366.0DomainNR LBD
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+29408_41659.333333333333336463.0Motif9aaTAD
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+18408_4160458.0Motif9aaTAD
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+29408_41659.333333333333336463.0Motif9aaTAD
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+27408_41659.333333333333336366.0Motif9aaTAD
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+29154_18259.333333333333336463.0RegionNote=Hinge
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+291_8759.333333333333336463.0RegionNote=Modulating
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+29404_41959.333333333333336463.0RegionNote=Required for binding corepressor NCOR1
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+18154_1820458.0RegionNote=Hinge
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+181_870458.0RegionNote=Modulating
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+18404_4190458.0RegionNote=Required for binding corepressor NCOR1
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+29154_18259.333333333333336463.0RegionNote=Hinge
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+291_8759.333333333333336463.0RegionNote=Modulating
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+29404_41959.333333333333336463.0RegionNote=Required for binding corepressor NCOR1
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+27154_18259.333333333333336366.0RegionNote=Hinge
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+271_8759.333333333333336366.0RegionNote=Modulating
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+27404_41959.333333333333336366.0RegionNote=Required for binding corepressor NCOR1
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+29124_14859.333333333333336463.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000254066+2988_10859.333333333333336463.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+18124_1480458.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000394081+1888_1080458.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+29124_14859.333333333333336463.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000394089+2988_10859.333333333333336463.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+27124_14859.333333333333336366.0Zinc fingerNR C4-type
HgeneRARAchr17:38487648chr16:15609161ENST00000425707+2788_10859.333333333333336366.0Zinc fingerNR C4-type
TgeneC16orf45chr17:38487648chr16:15609161ENST00000300006063_15035.333333333333336205.0DomainbMERB
TgeneC16orf45chr17:38487648chr16:15609161ENST00000452191063_15018.333333333333332188.0DomainbMERB


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Fusion Gene Sequence for RARA-C16orf45


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000254066_ENST00000300006_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2572nt_BP=633nt
CAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAG
CAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGA
CCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGG
GTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCT
GGGCCCAGGCCCCATGCCCCGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGC
TTGGCATGGCCAGCAACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCC
CCCCTATGCTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAG
CCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGG
AAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGC
AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGC
AGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCA
AGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGG
CCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGG
GGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGT
GACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTC
CTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTT
CTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTA
GCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCT
CCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAG
ATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGT
GCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTC
TGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCA
GCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCG
TCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGT
GTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAA
ATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTT
TAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTA
AAAAAGTCTTTTTTTGTGCATTTTTTCATCGTTGACATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCAT

>In-frame_ENST00000254066_ENST00000300006_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1448_stop in transcript=2191
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000254066_ENST00000566490_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2202nt_BP=633nt
CAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAG
CAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGA
CCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGG
GTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCT
GGGCCCAGGCCCCATGCCCCGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGC
TTGGCATGGCCAGCAACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCC
CCCCTATGCTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAG
CCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGG
AAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGC
AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGC
AGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCC
ACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGG
GCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCA
AGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCG
CATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATC
TCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAA
CAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCT
GTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATC
TGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGT
CCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCG
GAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGA
GATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTG
TGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTAC
AGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATC

>In-frame_ENST00000254066_ENST00000566490_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1365_stop in transcript=2108
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000254066_ENST00000452191_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2387nt_BP=633nt
CAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAG
CAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGA
CCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGG
GTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCT
GGGCCCAGGCCCCATGCCCCGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGC
TTGGCATGGCCAGCAACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCC
CCCCTATGCTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAG
CCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGG
AAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGC
AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGC
AGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCA
AGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGG
CCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGG
GGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGT
GACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTC
CTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTT
CTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTA
GCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCT
CCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAG
ATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGT
GCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTC
TGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCA
GCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCG
TCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGT
GTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAA
ATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTT

>In-frame_ENST00000254066_ENST00000452191_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1448_stop in transcript=2191
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000394089_ENST00000300006_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2647nt_BP=708nt
GTGACTCGCTATGGCCGCTGCCATCGCCCCGCGCCCCTGAGCCGCGGCCCCCTGGACGGCTCCTCTCCCGGGACCCCGCACCCTGATGCC
GAGCAGCACCAGGGCGCCGGGTTAGGGCAGACGCTGTGCTCGCTGGCACCCCGAACGGGTTGCTTCCCCCGCTGCGAGCATCACAGGACA
TGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAG
TGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGA
GACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCTGGGCCCAGGCCCCAT
GCCCCGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCA
ACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTG
GACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCAATCAGCTGGACA
TCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCC
GGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCA
TCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCC
TGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAG
ACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGG
CACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACC
CTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGG
CCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGC
CGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATC
TAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACA
CGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCC
CTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGT
GGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCT
CAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAG
AGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTT
GCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATA
TGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTAT
GTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACC
ACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAG
TATGAAGAAGTTTGTCTTAAAAAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTAAAAAAGTCTTTTTTT
GTGCATTTTTTCATCGTTGACATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCATCTTCCACATCATTAA

>In-frame_ENST00000394089_ENST00000300006_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1523_stop in transcript=2266
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000394089_ENST00000566490_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2277nt_BP=708nt
GTGACTCGCTATGGCCGCTGCCATCGCCCCGCGCCCCTGAGCCGCGGCCCCCTGGACGGCTCCTCTCCCGGGACCCCGCACCCTGATGCC
GAGCAGCACCAGGGCGCCGGGTTAGGGCAGACGCTGTGCTCGCTGGCACCCCGAACGGGTTGCTTCCCCCGCTGCGAGCATCACAGGACA
TGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAG
TGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGA
GACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCTGGGCCCAGGCCCCAT
GCCCCGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCA
ACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTG
GACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCAATCAGCTGGACA
TCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCC
GGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCA
TCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCC
TGGTGGACGATGCGGAGGTCGAGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACG
GGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCC
CCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCA
CCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAG
AGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAG
CTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATG
TCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAA
CTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCT
TGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAG
TCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCA
AGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATG
CCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGG
TGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTC
TCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAAT

>In-frame_ENST00000394089_ENST00000566490_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1440_stop in transcript=2183
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000394089_ENST00000452191_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2462nt_BP=708nt
GTGACTCGCTATGGCCGCTGCCATCGCCCCGCGCCCCTGAGCCGCGGCCCCCTGGACGGCTCCTCTCCCGGGACCCCGCACCCTGATGCC
GAGCAGCACCAGGGCGCCGGGTTAGGGCAGACGCTGTGCTCGCTGGCACCCCGAACGGGTTGCTTCCCCCGCTGCGAGCATCACAGGACA
TGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAG
TGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGA
GACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCTGGGCCCAGGCCCCAT
GCCCCGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCA
ACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTG
GACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCAATCAGCTGGACA
TCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCC
GGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCA
TCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCC
TGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAG
ACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGG
CACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACC
CTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGG
CCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGC
CGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATC
TAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACA
CGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCC
CTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGT
GGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCT
CAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAG
AGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTT
GCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATA
TGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTAT
GTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACC
ACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAG

>In-frame_ENST00000394089_ENST00000452191_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1523_stop in transcript=2266
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000425707_ENST00000300006_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2643nt_BP=704nt
CTCGCTATGGCCGCTGCCATCGCCCCGCGCCCCTGAGCCGCGGCCCCCTGGACGGCTCCTCTCCCGGGACCCCGCACCCTGATGCCGAGC
AGCACCAGGGCGCCGGGTTAGGGCAGACGCTGTGCTCGCTGGCACCCCGAACGGGTTGCTTCCCCCGCTGCGAGCATCACAGGACATGGC
CCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCC
AGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACT
GAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCTGGGCCCAGGCCCCATGCCC
CGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCAACAG
CAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTGGACT
CTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCAATCAGCTGGACATCAT
CTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGA
GTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCC
AGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGT
GGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAA
AGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACT
GATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCT
TGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCAT
GGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAA
CCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAAC
CCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTT
CCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGG
AGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTG
TCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGG
TGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCA
GTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCA
GCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTT
AACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGT
GTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGT
TCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATG
AAGAAGTTTGTCTTAAAAAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTAAAAAAGTCTTTTTTTGTGC
ATTTTTTCATCGTTGACATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCATCTTCCACATCATTAAAAGC

>In-frame_ENST00000425707_ENST00000300006_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1519_stop in transcript=2262
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

--------------------------------------------------------------
>In-frame_ENST00000425707_ENST00000566490_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2273nt_BP=704nt
CTCGCTATGGCCGCTGCCATCGCCCCGCGCCCCTGAGCCGCGGCCCCCTGGACGGCTCCTCTCCCGGGACCCCGCACCCTGATGCCGAGC
AGCACCAGGGCGCCGGGTTAGGGCAGACGCTGTGCTCGCTGGCACCCCGAACGGGTTGCTTCCCCCGCTGCGAGCATCACAGGACATGGC
CCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCC
AGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACT
GAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCTGGGCCCAGGCCCCATGCCC
CGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCAACAG
CAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTGGACT
CTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCAATCAGCTGGACATCAT
CTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGA
GTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCC
AGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGT
GGACGATGCGGAGGTCGAGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGC
TGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCC
ACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAG
AGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCA
TGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGT
ATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGG
ACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGT
GCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTG
TGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTG
CCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGC
CAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCAC
TTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGC
ATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTG
TATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAA

>In-frame_ENST00000425707_ENST00000566490_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1436_stop in transcript=2179
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

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>In-frame_ENST00000425707_ENST00000452191_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(transcript)=2458nt_BP=704nt
CTCGCTATGGCCGCTGCCATCGCCCCGCGCCCCTGAGCCGCGGCCCCCTGGACGGCTCCTCTCCCGGGACCCCGCACCCTGATGCCGAGC
AGCACCAGGGCGCCGGGTTAGGGCAGACGCTGTGCTCGCTGGCACCCCGAACGGGTTGCTTCCCCCGCTGCGAGCATCACAGGACATGGC
CCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCC
AGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACT
GAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGCTGACCACCCAAACCCCATCTGGGCCCAGGCCCCATGCCC
CGAGGAGGGGTGGTCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCAACAG
CAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTGGACT
CTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCAATCAGCTGGACATCAT
CTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGA
GTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCC
AGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGT
GGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAA
AGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACT
GATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCT
TGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCAT
GGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAA
CCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAAC
CCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTT
CCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGG
AGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTG
TCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGG
TGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCA
GTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCA
GCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTT
AACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGT
GTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGT
TCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATG

>In-frame_ENST00000425707_ENST00000452191_TCGA-AN-A046_RARA_chr17_38487648_+_C16orf45_chr16_15609161_length(amino acids)=247AA_start in transcript=1519_stop in transcript=2262
MYLTHRVNELGEGHAPQLCVVVTSQQSSTMSDTFPIHPPSSALRARHMGTGPLPSVLSQQLCPGGLHMAPVSLGHHPYSSPRGPICKDRA
CVWCRGHISRFPPSCVWAQFTSGQRPLCSQSASGVCLEGAWTGMDPVCRRASREPEALMSRPEQLRMGPRVDADLGTPPFRGHHRDASRM

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Fusion Gene PPI Analysis for RARA-C16orf45


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RARA-C16orf45


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RARA-C16orf45


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneRARAC0023487Acute Promyelocytic Leukemia24CTD_human;ORPHANET
HgeneRARAC0036341Schizophrenia3PSYGENET
HgeneRARAC0006142Malignant neoplasm of breast1CTD_human
HgeneRARAC0009363Congenital ocular coloboma (disorder)1GENOMICS_ENGLAND
HgeneRARAC0010701Phyllodes Tumor1CTD_human
HgeneRARAC0085183Neoplasms, Second Primary1CTD_human
HgeneRARAC0086696Neoplasms, Therapy-Associated1CTD_human
HgeneRARAC0149940Sciatic Neuropathy1CTD_human
HgeneRARAC0154748Lesion of Sciatic Nerve1CTD_human
HgeneRARAC0206650Fibroadenoma1CTD_human
HgeneRARAC0242013Sciatic Neuritis1CTD_human
HgeneRARAC0525045Mood Disorders1PSYGENET
HgeneRARAC0600066Malignant Cystosarcoma Phyllodes1CTD_human
HgeneRARAC0678222Breast Carcinoma1CTD_human
HgeneRARAC0751924Neuralgia-Neuritis, Sciatic Nerve1CTD_human
HgeneRARAC0751925Sciatic Nerve Palsy1CTD_human
HgeneRARAC0877578Treatment related secondary malignancy1CTD_human
HgeneRARAC1257931Mammary Neoplasms, Human1CTD_human
HgeneRARAC1458155Mammary Neoplasms1CTD_human
HgeneRARAC2239176Liver carcinoma1CTD_human
HgeneRARAC4704874Mammary Carcinoma, Human1CTD_human