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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RBFOX2-MED15 (FusionGDB2 ID:72226) |
Fusion Gene Summary for RBFOX2-MED15 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RBFOX2-MED15 | Fusion gene ID: 72226 | Hgene | Tgene | Gene symbol | RBFOX2 | MED15 | Gene ID | 23543 | 51586 |
Gene name | RNA binding fox-1 homolog 2 | mediator complex subunit 15 | |
Synonyms | FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh | ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 | |
Cytomap | 22q12.3 | 22q11.21 | |
Type of gene | protein-coding | protein-coding | |
Description | RNA binding protein fox-1 homolog 2RNA binding protein, fox-1 homolog 2RNA-binding motif protein 9fox-1 homolog Bfox-1 homologuehexaribonucleotide-binding protein 2repressor of tamoxifen transcriptional activity | mediator of RNA polymerase II transcription subunit 15CTG repeat protein 7aPC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated proteinPC2 glutamine/Q-rich-associated proteinPC2-glutamine-rich-associated proteinTPA inducible ge | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | . | Q96RN5 | |
Ensembl transtripts involved in fusion gene | ENST00000405409, ENST00000414461, ENST00000449924, ENST00000262829, ENST00000397303, ENST00000359369, ENST00000416721, ENST00000438146, | ENST00000425759, ENST00000292733, ENST00000542773, ENST00000263205, ENST00000406969, ENST00000382974, ENST00000541476, ENST00000478831, | |
Fusion gene scores | * DoF score | 39 X 29 X 13=14703 | 22 X 18 X 9=3564 |
# samples | 48 | 24 | |
** MAII score | log2(48/14703*10)=-4.93693233652239 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(24/3564*10)=-3.8923910259134 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RBFOX2 [Title/Abstract] AND MED15 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RBFOX2(36424288)-MED15(20905723), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RBFOX2 | GO:0030520 | intracellular estrogen receptor signaling pathway | 11875103 |
Hgene | RBFOX2 | GO:0045892 | negative regulation of transcription, DNA-templated | 11875103 |
Fusion gene breakpoints across RBFOX2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across MED15 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-EB-A5KH-06A | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
ChimerDB4 | SKCM | TCGA-EB-A5KH | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
ChimerDB4 | SKCM | TCGA-EB-A5KH-06A | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
Top |
Fusion Gene ORF analysis for RBFOX2-MED15 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000405409 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000405409 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000405409 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000405409 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000405409 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000405409 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000405409 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000405409 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000414461 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000414461 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000414461 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000414461 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000414461 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000414461 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000414461 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000414461 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000449924 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000449924 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000449924 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000449924 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000449924 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000449924 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000449924 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000449924 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000262829 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000262829 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000262829 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000262829 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000262829 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000262829 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000262829 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000262829 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000397303 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000397303 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000397303 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000397303 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000397303 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000397303 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000397303 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000397303 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000359369 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000359369 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000359369 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000359369 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000359369 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000359369 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000359369 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000359369 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000416721 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000416721 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000416721 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000416721 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000416721 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000416721 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000416721 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-intron | ENST00000416721 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
In-frame | ENST00000438146 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
In-frame | ENST00000438146 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
5CDS-intron | ENST00000438146 | ENST00000542773 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
5CDS-intron | ENST00000438146 | ENST00000263205 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
5CDS-intron | ENST00000438146 | ENST00000406969 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
5CDS-intron | ENST00000438146 | ENST00000382974 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
5CDS-intron | ENST00000438146 | ENST00000541476 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
5CDS-intron | ENST00000438146 | ENST00000478831 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + |
intron-3CDS | ENST00000405409 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000405409 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000405409 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000405409 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000405409 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000405409 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000405409 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000405409 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000414461 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000414461 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000414461 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000414461 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000414461 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000414461 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000414461 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000414461 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000449924 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000449924 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000449924 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000449924 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000449924 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000449924 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000449924 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000449924 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000262829 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000262829 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000262829 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000262829 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000262829 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000262829 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000262829 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000262829 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000397303 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000397303 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000397303 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000397303 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000397303 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000397303 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000397303 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000397303 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000359369 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000359369 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000359369 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000359369 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000359369 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000359369 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000359369 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000359369 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000416721 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-3CDS | ENST00000416721 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000416721 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000416721 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000416721 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000416721 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000416721 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
intron-intron | ENST00000416721 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
In-frame | ENST00000438146 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
In-frame | ENST00000438146 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
5CDS-intron | ENST00000438146 | ENST00000542773 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
5CDS-intron | ENST00000438146 | ENST00000263205 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
5CDS-intron | ENST00000438146 | ENST00000406969 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
5CDS-intron | ENST00000438146 | ENST00000382974 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
5CDS-intron | ENST00000438146 | ENST00000541476 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
5CDS-intron | ENST00000438146 | ENST00000478831 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000438146 | RBFOX2 | chr22 | 36424288 | - | ENST00000425759 | MED15 | chr22 | 20905723 | + | 2991 | 186 | 0 | 2063 | 687 |
ENST00000438146 | RBFOX2 | chr22 | 36424288 | - | ENST00000292733 | MED15 | chr22 | 20905723 | + | 3205 | 186 | 0 | 2276 | 758 |
ENST00000438146 | RBFOX2 | chr22 | 36424287 | - | ENST00000425759 | MED15 | chr22 | 20905722 | + | 2991 | 186 | 0 | 2063 | 687 |
ENST00000438146 | RBFOX2 | chr22 | 36424287 | - | ENST00000292733 | MED15 | chr22 | 20905722 | + | 3205 | 186 | 0 | 2276 | 758 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000438146 | ENST00000425759 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + | 0.016191525 | 0.98380846 |
ENST00000438146 | ENST00000292733 | RBFOX2 | chr22 | 36424288 | - | MED15 | chr22 | 20905723 | + | 0.02376233 | 0.97623765 |
ENST00000438146 | ENST00000425759 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + | 0.016191525 | 0.98380846 |
ENST00000438146 | ENST00000292733 | RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + | 0.02376233 | 0.97623765 |
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Fusion Genomic Features for RBFOX2-MED15 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + | 5.12E-09 | 1 |
RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + | 5.12E-09 | 1 |
RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + | 5.12E-09 | 1 |
RBFOX2 | chr22 | 36424287 | - | MED15 | chr22 | 20905722 | + | 5.12E-09 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RBFOX2-MED15 |
Go to FGviewer for the breakpoints of chr22:36424288-chr22:20905723 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | MED15 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for cholesterol-dependent gene regulation. Positively regulates the Nodal signaling pathway. {ECO:0000269|PubMed:12167862, ECO:0000269|PubMed:16630888, ECO:0000269|PubMed:16799563}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 161_174 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 178_193 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 205_218 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 226_239 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 243_262 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 266_515 | 52.0 | 789.0 | Compositional bias | Note=Pro-rich | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 360_367 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 449_456 | 52.0 | 789.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 602_611 | 52.0 | 789.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 161_174 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 178_193 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 205_218 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 226_239 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 243_262 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 266_515 | 52.0 | 749.0 | Compositional bias | Note=Pro-rich | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 360_367 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 449_456 | 52.0 | 749.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 602_611 | 52.0 | 749.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 161_174 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 178_193 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 205_218 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 226_239 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 243_262 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 266_515 | 52.0 | 678.0 | Compositional bias | Note=Pro-rich | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 360_367 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 449_456 | 52.0 | 678.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 602_611 | 52.0 | 678.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 161_174 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 178_193 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 205_218 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 226_239 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 243_262 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 266_515 | 52.0 | 789.0 | Compositional bias | Note=Pro-rich | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 360_367 | 52.0 | 789.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 449_456 | 52.0 | 789.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 602_611 | 52.0 | 789.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 161_174 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 178_193 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 205_218 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 226_239 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 243_262 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 266_515 | 52.0 | 749.0 | Compositional bias | Note=Pro-rich | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 360_367 | 52.0 | 749.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 449_456 | 52.0 | 749.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 602_611 | 52.0 | 749.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 161_174 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 178_193 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 205_218 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 226_239 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 243_262 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 266_515 | 52.0 | 678.0 | Compositional bias | Note=Pro-rich | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 360_367 | 52.0 | 678.0 | Compositional bias | Note=Poly-Gln | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 449_456 | 52.0 | 678.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 602_611 | 52.0 | 678.0 | Compositional bias | Note=Poly-Pro | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 547_564 | 52.0 | 789.0 | Motif | Nuclear localization signal | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 547_564 | 52.0 | 749.0 | Motif | Nuclear localization signal | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 547_564 | 52.0 | 678.0 | Motif | Nuclear localization signal | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 547_564 | 52.0 | 789.0 | Motif | Nuclear localization signal | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 547_564 | 52.0 | 749.0 | Motif | Nuclear localization signal | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 547_564 | 52.0 | 678.0 | Motif | Nuclear localization signal |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000262829 | - | 1 | 12 | 273_377 | 0 | 359.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000405409 | - | 1 | 12 | 273_377 | 0 | 368.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000414461 | - | 1 | 12 | 273_377 | 0.0 | 371.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000416721 | - | 1 | 13 | 273_377 | 0 | 377.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000438146 | - | 1 | 14 | 273_377 | 62.0 | 452.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000449924 | - | 1 | 13 | 273_377 | 0 | 381.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000262829 | - | 1 | 12 | 273_377 | 0 | 359.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000405409 | - | 1 | 12 | 273_377 | 0 | 368.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000414461 | - | 1 | 12 | 273_377 | 0.0 | 371.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000416721 | - | 1 | 13 | 273_377 | 0 | 377.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000438146 | - | 1 | 14 | 273_377 | 62.0 | 452.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000449924 | - | 1 | 13 | 273_377 | 0 | 381.0 | Compositional bias | Note=Ala-rich |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000262829 | - | 1 | 12 | 121_197 | 0 | 359.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000405409 | - | 1 | 12 | 121_197 | 0 | 368.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000414461 | - | 1 | 12 | 121_197 | 0.0 | 371.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000416721 | - | 1 | 13 | 121_197 | 0 | 377.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000438146 | - | 1 | 14 | 121_197 | 62.0 | 452.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424287 | chr22:20905722 | ENST00000449924 | - | 1 | 13 | 121_197 | 0 | 381.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000262829 | - | 1 | 12 | 121_197 | 0 | 359.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000405409 | - | 1 | 12 | 121_197 | 0 | 368.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000414461 | - | 1 | 12 | 121_197 | 0.0 | 371.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000416721 | - | 1 | 13 | 121_197 | 0 | 377.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000438146 | - | 1 | 14 | 121_197 | 62.0 | 452.0 | Domain | RRM |
Hgene | RBFOX2 | chr22:36424288 | chr22:20905723 | ENST00000449924 | - | 1 | 13 | 121_197 | 0 | 381.0 | Domain | RRM |
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Fusion Gene Sequence for RBFOX2-MED15 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000438146_ENST00000425759_TCGA-EB-A5KH-06A_RBFOX2_chr22_36424288_-_MED15_chr22_20905723_length(transcript)=2991nt_BP=186nt ATGGCGGAGGGCGCCCAGCCGCATCAGCCGCCTCAGCTCGGGCCCGGCGCCGCCGCCCGGGGCATGAAGCGGGAGTCGGAGCTGGAGCTG CCGGTGCCCGGAGCGGGAGGAGACGGAGCCGATCCCGGCCTGAGCAAGCGGCCGCGCACTGAGGAGGCGGCGGCCGACGGTGGCGGCGGG ATGCAGGACGAATACCTTTCTCTCGTGGCCAGGCTCATTATCCATTTTCGAGACATTCATAACAAGAAATCTCAAGCTTCCGTCAGTGCC CAGCTGCAGCTCCAGCAGGTGGCGCTGCAGCAGCAGCAGCAACAGCAGCAGTTCCAGCAGCAGCAGCAGGCGGCGCTACAGCAGCAGCAG CAGCAGCAGCAACAGCAGCAGTTCCAGGCTCAGCAGAGTGCCATGCAGCAGCAGTTCCAAGCAGTAGTGCAGCAGCAGCAGCAGCTCCAG CAGCAGCAGCAGCAGCAGCAGCATCTAATTAAATTGCATCATCAAAATCAGCAACAGATACAGCAGCAGCAACAGCAGCTGCAGCGAATA GCACAGCTGCAGCTCCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTTTGCAGGCCCAGCCACCAATTCAG CAGCCACCGATGCAGCAGCCACAGCCTCCGCCCTCCCAGGCTCTGCCCCAGCAGCTGCAGCAGATGCATCACACACAGCACCACCAGCCG CCACCACAGCCCCAGCAGCCTCCAGTTGCTCAGAACCAACCATCACAACTCCCGCCACAGTCGCAGACCCAGCCTTTGGTGTCACAGGCG CAAGCTCTCCCTGGACAAATGTTGTATACCCAACCACCACTGAAATTTGTCCGAGCTCCGATGGTGGTGCAGCAGCCCCCAGTGCAGCCC CAGGTGCAGCAGCAGCAGACAGCAGTACAGACAGCTCAGGCTGCCCAGATGGTGGCTCCCGGAGTCCAGGTCAGCCAGAGCAGCCTCCCC ATGCTGTCCTCGCCGTCACCGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCCCCCCAGCCGTCCCCGCAGCCCGGCCAGCCC AGCTCACAGCCCAACTCCAACGTCAGCTCTGGCCCTGCCCCATCTCCCAGTAGCTTCCTGCCCAGCCCCTCACCGCAGCCCTCCCAGAGC CCAGTGACGGCGCGGACCCCACAGAACTTCAGTGTCCCCTCACCTGGACCTTTAAACACACCTGTGAACCCCAGCTCTGTCATGAGCCCA GCTGGCTCCAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAGCTGTCGAAGTACATCGAGCCCCTGCGCCGCATGATCAAC AAGATCGACAAGAACGAAGACAGAAAAAAGGACCTGAGTAAGATGAAGAGCCTTCTGGACATTCTGACAGACCCCTCGAAGCGGTGTCCC CTGAAGACCTTGCAAAAGTGTGAGATCGCCCTGGAGAAACTCAAGAATGACATGGCGGTGCCCACTCCCCCACCGCCCCCGGTGCCACCG ACCAAACAGCAGTACCTATGCCAGCCGCTCCTGGATGCCGTCCTGGCCAACATCCGCTCACCTGTCTTCAACCATTCCCTGTACCGCACA TTCGTTCCAGCCATGACCGCCATTCACGGCCCACCCATCACGGCCCCAGTGGTGTGCACCCGGAAGCGCAGGCTTGAGGATGATGAGCGG CAGAGCATCCCCAGTGTGCTCCAGGGTGAGGTGGCCAGGCTGGACCCCAAGTTCCTGGTAAACCTGGACCCTTCTCACTGCAGCAACAAT GGCACTGTCCACCTGATCTGCAAGCTGGATGACAAGGACCTCCCAAGTGTGCCACCACTGGAGCTCAGTGTGCCCGCTGACTATCCTGCC CAAAGCCCGCTGTGGATAGACCGGCAGTGGCAGTACGACGCCAACCCCTTCCTCCAGTCGGTGCACCGCTGCATGACCTCCAGGCTGCTG CAGCTCCCGGACAAGCACTCGGTCACCGCCTTGCTCAACACCTGGGCCCAGAGCGTCCACCAGGCCTGCCTCTCAGCCGCCTAGCCAAGA CTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACACACGCCTCCTGTCAGACACTTCTAGGTGTTGGCTTCCTTAGAGAGCCTGGG GTTAGGTTAGCTTTCCTGCTTTTATCTTCTGCCTTGGGGACCTGCCAAACGAAATCCCACACCTGTACAGAACTGGGATAGGCGCAGTGG AGCGGGTTGCTTGGGGGGCGTTGGCCGACTTCTTAGAGAAGGCCCTCCATGTGACTTCCTCCCAGGAGCCAGATGCGATCCTCAGGCTGC TCTCACCGTGGCCTGTCCACGGTCCAGGTCCATCTCAGCAGCGTGAGGGTGCACTCAGGGTGTTGTTAGAGCGTCTCGTGTGTGCTAGAC GCACCCCTACTCGTTCCTATAGAACACAGAGGACATAGGAAACCCTTAAAACACACATGGGATTCTCTGGTCACAGTTTTGGGTTCAGGC TATGCTGCTTTGGGCAGGTGGAGCACCCCCCGAGGAAGCCTGCAAGTCCAGGGCACAGGCTGCCTTTTGGAGGGAGGGCTGGCCCATAGG TGCTGCTGGCTCCCCGCCACCAGCTGGGCCTCAGCCCTCACGGCATTCCTGCTGAGCACCGTGGGGCACCCAGGGAGCAGGGGCGTCAGG GATCCTGCTGCCGGCACCCCTGTGCCGCTGGCATGAGGGCCGTGTCCCCACTGTGAAGGATGAAGAGCAAGGCCCTCAGGACCCGTGTCC TCAGAGCACCACACACTGAGCACCCAGAGACAGCGGGCCTGGCAGCGGGCCGGGCCATGCAGGGAGCGCCTCCCTATGTTGCCTGCCACT CTGGGCACCGGCCAGCACCCTCTGGTGAGAAGAGGTCCCCCCTTTTTATGTGCACTACCCCACCATCTGTGATTATAATAAATTTATTAT >In-frame_ENST00000438146_ENST00000425759_TCGA-EB-A5KH-06A_RBFOX2_chr22_36424288_-_MED15_chr22_20905723_length(amino acids)=687AA_start in transcript=0_stop in transcript=2063 MAEGAQPHQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGGMQDEYLSLVARLIIHFRDIHNKKSQASVSA QLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRI AQLQLQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLVSQA QALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQP SSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMIN KIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRT FVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPA -------------------------------------------------------------- >In-frame_ENST00000438146_ENST00000292733_TCGA-EB-A5KH-06A_RBFOX2_chr22_36424288_-_MED15_chr22_20905723_length(transcript)=3205nt_BP=186nt ATGGCGGAGGGCGCCCAGCCGCATCAGCCGCCTCAGCTCGGGCCCGGCGCCGCCGCCCGGGGCATGAAGCGGGAGTCGGAGCTGGAGCTG CCGGTGCCCGGAGCGGGAGGAGACGGAGCCGATCCCGGCCTGAGCAAGCGGCCGCGCACTGAGGAGGCGGCGGCCGACGGTGGCGGCGGG ATGCAGGACGAATACCTTTCTCTCGTGGCCAGGCTCATTATCCATTTTCGAGACATTCATAACAAGAAATCTCAAGCTTCCGTCAGTGAT CCTATGAATGCACTCCAGAGCCTGACTGGCGGACCTGCTGCGGGAGCCGCTGGAATTGGCATGCCTCCTCGGGGCCCGGGACAGTCTCTG GGCGGGATGGGTAGCCTTGGTGCCATGGGACAGCCAATGTCTCTCTCAGGGCAGCCGCCTCCTGGGACCTCGGGGATGGCCCCTCACAGC ATGGCTGTCGTGTCTACGGCAACTCCACAGACCCAGCTGCAGCTCCAGCAGGTGGCGCTGCAGCAGCAGCAGCAACAGCAGCAGTTCCAG CAGCAGCAGCAGGCGGCGCTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGTTCCAGGCTCAGCAGAGTGCCATGCAGCAGCAGTTC CAAGCAGTAGTGCAGCAGCAGCAGCAGCTCCAGCAGCAGCAGCAGCAGCAGCAGCATCTAATTAAATTGCATCATCAAAATCAGCAACAG ATACAGCAGCAGCAACAGCAGCTGCAGCGAATAGCACAGCTGCAGCTCCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGGCTTTGCAGGCCCAGCCACCAATTCAGCAGCCACCGATGCAGCAGCCACAGCCTCCGCCCTCCCAGGCTCTGCCCCAGCAGCTG CAGCAGATGCATCACACACAGCACCACCAGCCGCCACCACAGCCCCAGCAGCCTCCAGTTGCTCAGAACCAACCATCACAACTCCCGCCA CAGTCGCAGACCCAGCCTTTGGTGTCACAGGCGCAAGCTCTCCCTGGACAAATGTTGTATACCCAACCACCACTGAAATTTGTCCGAGCT CCGATGGTGGTGCAGCAGCCCCCAGTGCAGCCCCAGGTGCAGCAGCAGCAGACAGCAGTACAGACAGCTCAGGCTGCCCAGATGGTGGCT CCCGGAGTCCAGGTCAGCCAGAGCAGCCTCCCCATGCTGTCCTCGCCGTCACCGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCT CCCCCCCAGCCGTCCCCGCAGCCCGGCCAGCCCAGCTCACAGCCCAACTCCAACGTCAGCTCTGGCCCTGCCCCATCTCCCAGTAGCTTC CTGCCCAGCCCCTCACCGCAGCCCTCCCAGAGCCCAGTGACGGCGCGGACCCCACAGAACTTCAGTGTCCCCTCACCTGGACCTTTAAAC ACACCTGTGAACCCCAGCTCTGTCATGAGCCCAGCTGGCTCCAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAGCTGTCG AAGTACATCGAGCCCCTGCGCCGCATGATCAACAAGATCGACAAGAACGAAGACAGAAAAAAGGACCTGAGTAAGATGAAGAGCCTTCTG GACATTCTGACAGACCCCTCGAAGCGGTGTCCCCTGAAGACCTTGCAAAAGTGTGAGATCGCCCTGGAGAAACTCAAGAATGACATGGCG GTGCCCACTCCCCCACCGCCCCCGGTGCCACCGACCAAACAGCAGTACCTATGCCAGCCGCTCCTGGATGCCGTCCTGGCCAACATCCGC TCACCTGTCTTCAACCATTCCCTGTACCGCACATTCGTTCCAGCCATGACCGCCATTCACGGCCCACCCATCACGGCCCCAGTGGTGTGC ACCCGGAAGCGCAGGCTTGAGGATGATGAGCGGCAGAGCATCCCCAGTGTGCTCCAGGGTGAGGTGGCCAGGCTGGACCCCAAGTTCCTG GTAAACCTGGACCCTTCTCACTGCAGCAACAATGGCACTGTCCACCTGATCTGCAAGCTGGATGACAAGGACCTCCCAAGTGTGCCACCA CTGGAGCTCAGTGTGCCCGCTGACTATCCTGCCCAAAGCCCGCTGTGGATAGACCGGCAGTGGCAGTACGACGCCAACCCCTTCCTCCAG TCGGTGCACCGCTGCATGACCTCCAGGCTGCTGCAGCTCCCGGACAAGCACTCGGTCACCGCCTTGCTCAACACCTGGGCCCAGAGCGTC CACCAGGCCTGCCTCTCAGCCGCCTAGCCAAGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACACACGCCTCCTGTCAGACA CTTCTAGGTGTTGGCTTCCTTAGAGAGCCTGGGGTTAGGTTAGCTTTCCTGCTTTTATCTTCTGCCTTGGGGACCTGCCAAACGAAATCC CACACCTGTACAGAACTGGGATAGGCGCAGTGGAGCGGGTTGCTTGGGGGGCGTTGGCCGACTTCTTAGAGAAGGCCCTCCATGTGACTT CCTCCCAGGAGCCAGATGCGATCCTCAGGCTGCTCTCACCGTGGCCTGTCCACGGTCCAGGTCCATCTCAGCAGCGTGAGGGTGCACTCA GGGTGTTGTTAGAGCGTCTCGTGTGTGCTAGACGCACCCCTACTCGTTCCTATAGAACACAGAGGACATAGGAAACCCTTAAAACACACA TGGGATTCTCTGGTCACAGTTTTGGGTTCAGGCTATGCTGCTTTGGGCAGGTGGAGCACCCCCCGAGGAAGCCTGCAAGTCCAGGGCACA GGCTGCCTTTTGGAGGGAGGGCTGGCCCATAGGTGCTGCTGGCTCCCCGCCACCAGCTGGGCCTCAGCCCTCACGGCATTCCTGCTGAGC ACCGTGGGGCACCCAGGGAGCAGGGGCGTCAGGGATCCTGCTGCCGGCACCCCTGTGCCGCTGGCATGAGGGCCGTGTCCCCACTGTGAA GGATGAAGAGCAAGGCCCTCAGGACCCGTGTCCTCAGAGCACCACACACTGAGCACCCAGAGACAGCGGGCCTGGCAGCGGGCCGGGCCA TGCAGGGAGCGCCTCCCTATGTTGCCTGCCACTCTGGGCACCGGCCAGCACCCTCTGGTGAGAAGAGGTCCCCCCTTTTTATGTGCACTA >In-frame_ENST00000438146_ENST00000292733_TCGA-EB-A5KH-06A_RBFOX2_chr22_36424288_-_MED15_chr22_20905723_length(amino acids)=758AA_start in transcript=0_stop in transcript=2276 MAEGAQPHQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGGMQDEYLSLVARLIIHFRDIHNKKSQASVSD PMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQ QQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQ QQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRA PMVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSF LPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLL DILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVC TRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQ -------------------------------------------------------------- >In-frame_ENST00000438146_ENST00000425759_TCGA-EB-A5KH_RBFOX2_chr22_36424287_-_MED15_chr22_20905722_length(transcript)=2991nt_BP=186nt ATGGCGGAGGGCGCCCAGCCGCATCAGCCGCCTCAGCTCGGGCCCGGCGCCGCCGCCCGGGGCATGAAGCGGGAGTCGGAGCTGGAGCTG CCGGTGCCCGGAGCGGGAGGAGACGGAGCCGATCCCGGCCTGAGCAAGCGGCCGCGCACTGAGGAGGCGGCGGCCGACGGTGGCGGCGGG ATGCAGGACGAATACCTTTCTCTCGTGGCCAGGCTCATTATCCATTTTCGAGACATTCATAACAAGAAATCTCAAGCTTCCGTCAGTGCC CAGCTGCAGCTCCAGCAGGTGGCGCTGCAGCAGCAGCAGCAACAGCAGCAGTTCCAGCAGCAGCAGCAGGCGGCGCTACAGCAGCAGCAG CAGCAGCAGCAACAGCAGCAGTTCCAGGCTCAGCAGAGTGCCATGCAGCAGCAGTTCCAAGCAGTAGTGCAGCAGCAGCAGCAGCTCCAG CAGCAGCAGCAGCAGCAGCAGCATCTAATTAAATTGCATCATCAAAATCAGCAACAGATACAGCAGCAGCAACAGCAGCTGCAGCGAATA GCACAGCTGCAGCTCCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTTTGCAGGCCCAGCCACCAATTCAG CAGCCACCGATGCAGCAGCCACAGCCTCCGCCCTCCCAGGCTCTGCCCCAGCAGCTGCAGCAGATGCATCACACACAGCACCACCAGCCG CCACCACAGCCCCAGCAGCCTCCAGTTGCTCAGAACCAACCATCACAACTCCCGCCACAGTCGCAGACCCAGCCTTTGGTGTCACAGGCG CAAGCTCTCCCTGGACAAATGTTGTATACCCAACCACCACTGAAATTTGTCCGAGCTCCGATGGTGGTGCAGCAGCCCCCAGTGCAGCCC CAGGTGCAGCAGCAGCAGACAGCAGTACAGACAGCTCAGGCTGCCCAGATGGTGGCTCCCGGAGTCCAGGTCAGCCAGAGCAGCCTCCCC ATGCTGTCCTCGCCGTCACCGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCCCCCCAGCCGTCCCCGCAGCCCGGCCAGCCC AGCTCACAGCCCAACTCCAACGTCAGCTCTGGCCCTGCCCCATCTCCCAGTAGCTTCCTGCCCAGCCCCTCACCGCAGCCCTCCCAGAGC CCAGTGACGGCGCGGACCCCACAGAACTTCAGTGTCCCCTCACCTGGACCTTTAAACACACCTGTGAACCCCAGCTCTGTCATGAGCCCA GCTGGCTCCAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAGCTGTCGAAGTACATCGAGCCCCTGCGCCGCATGATCAAC AAGATCGACAAGAACGAAGACAGAAAAAAGGACCTGAGTAAGATGAAGAGCCTTCTGGACATTCTGACAGACCCCTCGAAGCGGTGTCCC CTGAAGACCTTGCAAAAGTGTGAGATCGCCCTGGAGAAACTCAAGAATGACATGGCGGTGCCCACTCCCCCACCGCCCCCGGTGCCACCG ACCAAACAGCAGTACCTATGCCAGCCGCTCCTGGATGCCGTCCTGGCCAACATCCGCTCACCTGTCTTCAACCATTCCCTGTACCGCACA TTCGTTCCAGCCATGACCGCCATTCACGGCCCACCCATCACGGCCCCAGTGGTGTGCACCCGGAAGCGCAGGCTTGAGGATGATGAGCGG CAGAGCATCCCCAGTGTGCTCCAGGGTGAGGTGGCCAGGCTGGACCCCAAGTTCCTGGTAAACCTGGACCCTTCTCACTGCAGCAACAAT GGCACTGTCCACCTGATCTGCAAGCTGGATGACAAGGACCTCCCAAGTGTGCCACCACTGGAGCTCAGTGTGCCCGCTGACTATCCTGCC CAAAGCCCGCTGTGGATAGACCGGCAGTGGCAGTACGACGCCAACCCCTTCCTCCAGTCGGTGCACCGCTGCATGACCTCCAGGCTGCTG CAGCTCCCGGACAAGCACTCGGTCACCGCCTTGCTCAACACCTGGGCCCAGAGCGTCCACCAGGCCTGCCTCTCAGCCGCCTAGCCAAGA CTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACACACGCCTCCTGTCAGACACTTCTAGGTGTTGGCTTCCTTAGAGAGCCTGGG GTTAGGTTAGCTTTCCTGCTTTTATCTTCTGCCTTGGGGACCTGCCAAACGAAATCCCACACCTGTACAGAACTGGGATAGGCGCAGTGG AGCGGGTTGCTTGGGGGGCGTTGGCCGACTTCTTAGAGAAGGCCCTCCATGTGACTTCCTCCCAGGAGCCAGATGCGATCCTCAGGCTGC TCTCACCGTGGCCTGTCCACGGTCCAGGTCCATCTCAGCAGCGTGAGGGTGCACTCAGGGTGTTGTTAGAGCGTCTCGTGTGTGCTAGAC GCACCCCTACTCGTTCCTATAGAACACAGAGGACATAGGAAACCCTTAAAACACACATGGGATTCTCTGGTCACAGTTTTGGGTTCAGGC TATGCTGCTTTGGGCAGGTGGAGCACCCCCCGAGGAAGCCTGCAAGTCCAGGGCACAGGCTGCCTTTTGGAGGGAGGGCTGGCCCATAGG TGCTGCTGGCTCCCCGCCACCAGCTGGGCCTCAGCCCTCACGGCATTCCTGCTGAGCACCGTGGGGCACCCAGGGAGCAGGGGCGTCAGG GATCCTGCTGCCGGCACCCCTGTGCCGCTGGCATGAGGGCCGTGTCCCCACTGTGAAGGATGAAGAGCAAGGCCCTCAGGACCCGTGTCC TCAGAGCACCACACACTGAGCACCCAGAGACAGCGGGCCTGGCAGCGGGCCGGGCCATGCAGGGAGCGCCTCCCTATGTTGCCTGCCACT CTGGGCACCGGCCAGCACCCTCTGGTGAGAAGAGGTCCCCCCTTTTTATGTGCACTACCCCACCATCTGTGATTATAATAAATTTATTAT >In-frame_ENST00000438146_ENST00000425759_TCGA-EB-A5KH_RBFOX2_chr22_36424287_-_MED15_chr22_20905722_length(amino acids)=687AA_start in transcript=0_stop in transcript=2063 MAEGAQPHQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGGMQDEYLSLVARLIIHFRDIHNKKSQASVSA QLQLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRI AQLQLQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLVSQA QALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQP SSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMIN KIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRT FVPAMTAIHGPPITAPVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPA -------------------------------------------------------------- >In-frame_ENST00000438146_ENST00000292733_TCGA-EB-A5KH_RBFOX2_chr22_36424287_-_MED15_chr22_20905722_length(transcript)=3205nt_BP=186nt ATGGCGGAGGGCGCCCAGCCGCATCAGCCGCCTCAGCTCGGGCCCGGCGCCGCCGCCCGGGGCATGAAGCGGGAGTCGGAGCTGGAGCTG CCGGTGCCCGGAGCGGGAGGAGACGGAGCCGATCCCGGCCTGAGCAAGCGGCCGCGCACTGAGGAGGCGGCGGCCGACGGTGGCGGCGGG ATGCAGGACGAATACCTTTCTCTCGTGGCCAGGCTCATTATCCATTTTCGAGACATTCATAACAAGAAATCTCAAGCTTCCGTCAGTGAT CCTATGAATGCACTCCAGAGCCTGACTGGCGGACCTGCTGCGGGAGCCGCTGGAATTGGCATGCCTCCTCGGGGCCCGGGACAGTCTCTG GGCGGGATGGGTAGCCTTGGTGCCATGGGACAGCCAATGTCTCTCTCAGGGCAGCCGCCTCCTGGGACCTCGGGGATGGCCCCTCACAGC ATGGCTGTCGTGTCTACGGCAACTCCACAGACCCAGCTGCAGCTCCAGCAGGTGGCGCTGCAGCAGCAGCAGCAACAGCAGCAGTTCCAG CAGCAGCAGCAGGCGGCGCTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGTTCCAGGCTCAGCAGAGTGCCATGCAGCAGCAGTTC CAAGCAGTAGTGCAGCAGCAGCAGCAGCTCCAGCAGCAGCAGCAGCAGCAGCAGCATCTAATTAAATTGCATCATCAAAATCAGCAACAG ATACAGCAGCAGCAACAGCAGCTGCAGCGAATAGCACAGCTGCAGCTCCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGGCTTTGCAGGCCCAGCCACCAATTCAGCAGCCACCGATGCAGCAGCCACAGCCTCCGCCCTCCCAGGCTCTGCCCCAGCAGCTG CAGCAGATGCATCACACACAGCACCACCAGCCGCCACCACAGCCCCAGCAGCCTCCAGTTGCTCAGAACCAACCATCACAACTCCCGCCA CAGTCGCAGACCCAGCCTTTGGTGTCACAGGCGCAAGCTCTCCCTGGACAAATGTTGTATACCCAACCACCACTGAAATTTGTCCGAGCT CCGATGGTGGTGCAGCAGCCCCCAGTGCAGCCCCAGGTGCAGCAGCAGCAGACAGCAGTACAGACAGCTCAGGCTGCCCAGATGGTGGCT CCCGGAGTCCAGGTCAGCCAGAGCAGCCTCCCCATGCTGTCCTCGCCGTCACCGGGCCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCT CCCCCCCAGCCGTCCCCGCAGCCCGGCCAGCCCAGCTCACAGCCCAACTCCAACGTCAGCTCTGGCCCTGCCCCATCTCCCAGTAGCTTC CTGCCCAGCCCCTCACCGCAGCCCTCCCAGAGCCCAGTGACGGCGCGGACCCCACAGAACTTCAGTGTCCCCTCACCTGGACCTTTAAAC ACACCTGTGAACCCCAGCTCTGTCATGAGCCCAGCTGGCTCCAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAGCTGTCG AAGTACATCGAGCCCCTGCGCCGCATGATCAACAAGATCGACAAGAACGAAGACAGAAAAAAGGACCTGAGTAAGATGAAGAGCCTTCTG GACATTCTGACAGACCCCTCGAAGCGGTGTCCCCTGAAGACCTTGCAAAAGTGTGAGATCGCCCTGGAGAAACTCAAGAATGACATGGCG GTGCCCACTCCCCCACCGCCCCCGGTGCCACCGACCAAACAGCAGTACCTATGCCAGCCGCTCCTGGATGCCGTCCTGGCCAACATCCGC TCACCTGTCTTCAACCATTCCCTGTACCGCACATTCGTTCCAGCCATGACCGCCATTCACGGCCCACCCATCACGGCCCCAGTGGTGTGC ACCCGGAAGCGCAGGCTTGAGGATGATGAGCGGCAGAGCATCCCCAGTGTGCTCCAGGGTGAGGTGGCCAGGCTGGACCCCAAGTTCCTG GTAAACCTGGACCCTTCTCACTGCAGCAACAATGGCACTGTCCACCTGATCTGCAAGCTGGATGACAAGGACCTCCCAAGTGTGCCACCA CTGGAGCTCAGTGTGCCCGCTGACTATCCTGCCCAAAGCCCGCTGTGGATAGACCGGCAGTGGCAGTACGACGCCAACCCCTTCCTCCAG TCGGTGCACCGCTGCATGACCTCCAGGCTGCTGCAGCTCCCGGACAAGCACTCGGTCACCGCCTTGCTCAACACCTGGGCCCAGAGCGTC CACCAGGCCTGCCTCTCAGCCGCCTAGCCAAGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACACACGCCTCCTGTCAGACA CTTCTAGGTGTTGGCTTCCTTAGAGAGCCTGGGGTTAGGTTAGCTTTCCTGCTTTTATCTTCTGCCTTGGGGACCTGCCAAACGAAATCC CACACCTGTACAGAACTGGGATAGGCGCAGTGGAGCGGGTTGCTTGGGGGGCGTTGGCCGACTTCTTAGAGAAGGCCCTCCATGTGACTT CCTCCCAGGAGCCAGATGCGATCCTCAGGCTGCTCTCACCGTGGCCTGTCCACGGTCCAGGTCCATCTCAGCAGCGTGAGGGTGCACTCA GGGTGTTGTTAGAGCGTCTCGTGTGTGCTAGACGCACCCCTACTCGTTCCTATAGAACACAGAGGACATAGGAAACCCTTAAAACACACA TGGGATTCTCTGGTCACAGTTTTGGGTTCAGGCTATGCTGCTTTGGGCAGGTGGAGCACCCCCCGAGGAAGCCTGCAAGTCCAGGGCACA GGCTGCCTTTTGGAGGGAGGGCTGGCCCATAGGTGCTGCTGGCTCCCCGCCACCAGCTGGGCCTCAGCCCTCACGGCATTCCTGCTGAGC ACCGTGGGGCACCCAGGGAGCAGGGGCGTCAGGGATCCTGCTGCCGGCACCCCTGTGCCGCTGGCATGAGGGCCGTGTCCCCACTGTGAA GGATGAAGAGCAAGGCCCTCAGGACCCGTGTCCTCAGAGCACCACACACTGAGCACCCAGAGACAGCGGGCCTGGCAGCGGGCCGGGCCA TGCAGGGAGCGCCTCCCTATGTTGCCTGCCACTCTGGGCACCGGCCAGCACCCTCTGGTGAGAAGAGGTCCCCCCTTTTTATGTGCACTA >In-frame_ENST00000438146_ENST00000292733_TCGA-EB-A5KH_RBFOX2_chr22_36424287_-_MED15_chr22_20905722_length(amino acids)=758AA_start in transcript=0_stop in transcript=2276 MAEGAQPHQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGGMQDEYLSLVARLIIHFRDIHNKKSQASVSD PMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQ QQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQ QQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRA PMVVQQPPVQPQVQQQQTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSF LPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLL DILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVC TRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQ -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RBFOX2-MED15 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000263205 | 1 | 18 | 9_73 | 52.0 | 789.0 | SREBF1 | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000292733 | 1 | 17 | 9_73 | 52.0 | 749.0 | SREBF1 | |
Tgene | MED15 | chr22:36424287 | chr22:20905722 | ENST00000382974 | 1 | 16 | 9_73 | 52.0 | 678.0 | SREBF1 | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000263205 | 1 | 18 | 9_73 | 52.0 | 789.0 | SREBF1 | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000292733 | 1 | 17 | 9_73 | 52.0 | 749.0 | SREBF1 | |
Tgene | MED15 | chr22:36424288 | chr22:20905723 | ENST00000382974 | 1 | 16 | 9_73 | 52.0 | 678.0 | SREBF1 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RBFOX2-MED15 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RBFOX2-MED15 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | RBFOX2 | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
Hgene | RBFOX2 | C0036095 | Salivary Gland Neoplasms | 1 | CTD_human |
Hgene | RBFOX2 | C0220636 | Malignant neoplasm of salivary gland | 1 | CTD_human |
Tgene | MED15 | C0036341 | Schizophrenia | 2 | PSYGENET |
Tgene | MED15 | C0036337 | Schizoaffective Disorder | 1 | PSYGENET |