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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SEPT7-FNDC3B (FusionGDB2 ID:73) |
Fusion Gene Summary for SEPT7-FNDC3B |
Fusion gene summary |
Fusion gene information | Fusion gene name: SEPT7-FNDC3B | Fusion gene ID: 73 | Hgene | Tgene | Gene symbol | SEPT7 | FNDC3B | Gene ID | 989 | 64778 |
Gene name | septin 7 | fibronectin type III domain containing 3B | |
Synonyms | CDC10|CDC3|NBLA02942|SEPT7|SEPT7A | FAD104|PRO4979|YVTM2421 | |
Cytomap | 7p14.2 | 3q26.31 | |
Type of gene | protein-coding | protein-coding | |
Description | septin-7CDC10 (cell division cycle 10, S. cerevisiae, homolog)CDC10 protein homologseptin 7 variant 4 | fibronectin type III domain-containing protein 3BHCV NS5A-binding protein 37factor for adipocyte differentiation 104 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q53EP0 | |
Ensembl transtripts involved in fusion gene | ENST00000435235, ENST00000469679, ENST00000399034, ENST00000350320, ENST00000399035, ENST00000475109, ENST00000494488, ENST00000432293, | ENST00000415807, ENST00000336824, ENST00000416957, ENST00000392699, ENST00000421757, ENST00000423424, ENST00000476794, | |
Fusion gene scores | * DoF score | 8 X 5 X 7=280 | 21 X 23 X 11=5313 |
# samples | 8 | 28 | |
** MAII score | log2(8/280*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(28/5313*10)=-4.2460279805281 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SEPT7 [Title/Abstract] AND FNDC3B [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SEPT7(35840882)-FNDC3B(172046741), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | SEPT7-FNDC3B seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SEPT7 | GO:0030336 | negative regulation of cell migration | - |
Hgene | SEPT7 | GO:0043065 | positive regulation of apoptotic process | - |
Hgene | SEPT7 | GO:2000134 | negative regulation of G1/S transition of mitotic cell cycle | - |
Fusion gene breakpoints across SEPT7 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across FNDC3B (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | Non-Cancer | TCGA-AX-A0J0-11A | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
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Fusion Gene ORF analysis for SEPT7-FNDC3B |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000435235 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5UTR-3CDS | ENST00000435235 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5UTR-3CDS | ENST00000435235 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5UTR-intron | ENST00000435235 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5UTR-intron | ENST00000435235 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5UTR-intron | ENST00000435235 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5UTR-intron | ENST00000435235 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000469679 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000469679 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000469679 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000469679 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000469679 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000469679 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000469679 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000399034 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000399034 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000399034 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399034 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399034 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399034 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399034 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
In-frame | ENST00000350320 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
In-frame | ENST00000350320 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
In-frame | ENST00000350320 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000350320 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000350320 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000350320 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000350320 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000399035 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000399035 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
Frame-shift | ENST00000399035 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399035 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399035 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399035 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
5CDS-intron | ENST00000399035 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-3CDS | ENST00000475109 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-3CDS | ENST00000475109 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-3CDS | ENST00000475109 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-intron | ENST00000475109 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-intron | ENST00000475109 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-intron | ENST00000475109 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
3UTR-intron | ENST00000475109 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-3CDS | ENST00000494488 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-3CDS | ENST00000494488 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-3CDS | ENST00000494488 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000494488 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000494488 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000494488 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000494488 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-3CDS | ENST00000432293 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-3CDS | ENST00000432293 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-3CDS | ENST00000432293 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000432293 | ENST00000392699 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000432293 | ENST00000421757 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000432293 | ENST00000423424 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
intron-intron | ENST00000432293 | ENST00000476794 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000350320 | SEPT7 | chr7 | 35840882 | + | ENST00000415807 | FNDC3B | chr3 | 172046741 | + | 3913 | 256 | 115 | 2616 | 833 |
ENST00000350320 | SEPT7 | chr7 | 35840882 | + | ENST00000336824 | FNDC3B | chr3 | 172046741 | + | 6807 | 256 | 115 | 2616 | 833 |
ENST00000350320 | SEPT7 | chr7 | 35840882 | + | ENST00000416957 | FNDC3B | chr3 | 172046741 | + | 2623 | 256 | 115 | 2616 | 833 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000350320 | ENST00000415807 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + | 0.000752295 | 0.9992478 |
ENST00000350320 | ENST00000336824 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + | 0.000492432 | 0.99950755 |
ENST00000350320 | ENST00000416957 | SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + | 0.001759991 | 0.99824 |
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Fusion Genomic Features for SEPT7-FNDC3B |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + | 0.000310355 | 0.9996897 |
SEPT7 | chr7 | 35840882 | + | FNDC3B | chr3 | 172046741 | + | 0.000310355 | 0.9996897 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SEPT7-FNDC3B |
Go to FGviewer for the breakpoints of chr7:35840882-chr3:172046741 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | FNDC3B |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: May be a positive regulator of adipogenesis. {ECO:0000269|PubMed:15564382}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 231_243 | 0 | 72.0 | Compositional bias | Note=Poly-Gly | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 231_243 | 0 | 72.0 | Compositional bias | Note=Poly-Gly | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 1056_1153 | 418.0 | 1205.0 | Domain | Fibronectin type-III 9 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 477_570 | 418.0 | 1205.0 | Domain | Fibronectin type-III 3 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 574_669 | 418.0 | 1205.0 | Domain | Fibronectin type-III 4 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 673_765 | 418.0 | 1205.0 | Domain | Fibronectin type-III 5 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 766_859 | 418.0 | 1205.0 | Domain | Fibronectin type-III 6 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 871_957 | 418.0 | 1205.0 | Domain | Fibronectin type-III 7 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 958_1052 | 418.0 | 1205.0 | Domain | Fibronectin type-III 8 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 1056_1153 | 418.0 | 1205.0 | Domain | Fibronectin type-III 9 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 477_570 | 418.0 | 1205.0 | Domain | Fibronectin type-III 3 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 574_669 | 418.0 | 1205.0 | Domain | Fibronectin type-III 4 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 673_765 | 418.0 | 1205.0 | Domain | Fibronectin type-III 5 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 766_859 | 418.0 | 1205.0 | Domain | Fibronectin type-III 6 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 871_957 | 418.0 | 1205.0 | Domain | Fibronectin type-III 7 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 958_1052 | 418.0 | 1205.0 | Domain | Fibronectin type-III 8 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 1056_1153 | 418.0 | 1205.0 | Domain | Fibronectin type-III 9 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 477_570 | 418.0 | 1205.0 | Domain | Fibronectin type-III 3 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 574_669 | 418.0 | 1205.0 | Domain | Fibronectin type-III 4 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 673_765 | 418.0 | 1205.0 | Domain | Fibronectin type-III 5 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 766_859 | 418.0 | 1205.0 | Domain | Fibronectin type-III 6 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 871_957 | 418.0 | 1205.0 | Domain | Fibronectin type-III 7 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 958_1052 | 418.0 | 1205.0 | Domain | Fibronectin type-III 8 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 1056_1153 | 0 | 72.0 | Domain | Fibronectin type-III 9 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 278_377 | 0 | 72.0 | Domain | Fibronectin type-III 1 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 381_473 | 0 | 72.0 | Domain | Fibronectin type-III 2 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 477_570 | 0 | 72.0 | Domain | Fibronectin type-III 3 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 574_669 | 0 | 72.0 | Domain | Fibronectin type-III 4 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 673_765 | 0 | 72.0 | Domain | Fibronectin type-III 5 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 766_859 | 0 | 72.0 | Domain | Fibronectin type-III 6 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 871_957 | 0 | 72.0 | Domain | Fibronectin type-III 7 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 958_1052 | 0 | 72.0 | Domain | Fibronectin type-III 8 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 1056_1153 | 0 | 72.0 | Domain | Fibronectin type-III 9 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 278_377 | 0 | 72.0 | Domain | Fibronectin type-III 1 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 381_473 | 0 | 72.0 | Domain | Fibronectin type-III 2 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 477_570 | 0 | 72.0 | Domain | Fibronectin type-III 3 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 574_669 | 0 | 72.0 | Domain | Fibronectin type-III 4 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 673_765 | 0 | 72.0 | Domain | Fibronectin type-III 5 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 766_859 | 0 | 72.0 | Domain | Fibronectin type-III 6 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 871_957 | 0 | 72.0 | Domain | Fibronectin type-III 7 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 958_1052 | 0 | 72.0 | Domain | Fibronectin type-III 8 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 1182_1202 | 418.0 | 1205.0 | Transmembrane | Helical | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 1182_1202 | 418.0 | 1205.0 | Transmembrane | Helical | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 1182_1202 | 418.0 | 1205.0 | Transmembrane | Helical | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000421757 | 0 | 4 | 1182_1202 | 0 | 72.0 | Transmembrane | Helical | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000423424 | 0 | 4 | 1182_1202 | 0 | 72.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 332_437 | 20.333333333333332 | 439.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 47_316 | 20.333333333333332 | 439.0 | Domain | Septin-type G |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 195_203 | 20.333333333333332 | 439.0 | Nucleotide binding | GTP |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 113_116 | 20.333333333333332 | 439.0 | Region | G3 motif |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 194_197 | 20.333333333333332 | 439.0 | Region | G4 motif |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 57_64 | 20.333333333333332 | 439.0 | Region | G1 motif |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 231_243 | 418.0 | 1205.0 | Compositional bias | Note=Poly-Gly | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 231_243 | 418.0 | 1205.0 | Compositional bias | Note=Poly-Gly | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 231_243 | 418.0 | 1205.0 | Compositional bias | Note=Poly-Gly | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 278_377 | 418.0 | 1205.0 | Domain | Fibronectin type-III 1 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000336824 | 10 | 26 | 381_473 | 418.0 | 1205.0 | Domain | Fibronectin type-III 2 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 278_377 | 418.0 | 1205.0 | Domain | Fibronectin type-III 1 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000415807 | 10 | 26 | 381_473 | 418.0 | 1205.0 | Domain | Fibronectin type-III 2 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 278_377 | 418.0 | 1205.0 | Domain | Fibronectin type-III 1 | |
Tgene | FNDC3B | chr7:35840882 | chr3:172046741 | ENST00000416957 | 10 | 26 | 381_473 | 418.0 | 1205.0 | Domain | Fibronectin type-III 2 |
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Fusion Gene Sequence for SEPT7-FNDC3B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000350320_ENST00000415807_TCGA-AX-A0J0-11A_SEPT7_chr7_35840882_+_FNDC3B_chr3_172046741_length(transcript)=3913nt_BP=256nt AGCCTCGTCTGAGGGGGCGGGGGACGGAGGAGGGAGCGGGAGTCGAGCGAGAGCCTGTGGAGGAGTCCGCCTGCTGTAGCGTGCGTAAGC AAGGCAGCTACGCCGGGCGGCTACGCTGCGGAATCGGCGTAGGCGCCTTTGGAGAATCGGCGGGCTGCGCTCCGCTGGGGCTGGTCGCGG AGGGGGGGAGGGGATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGGGTGGAAAAAGAAATAG TGGTTTCAGACAGTGCTTCTTCGGGAGCCAGAAGCACTGCAAGTTGACAAAGCTTTGTCCGGCAATGGGGTACACATTCAGGCTGGCCGC TCGAAACGACATTGGTACCAGTGGTTATAGCCAAGAGGTGGTGTGCTACACATTAGGAAATATCCCTCAGATGCCTTCTGCACCAAGGCT GGTTCGAGCTGGCATCACATGGGTCACGTTGCAGTGGAGTAAGCCAGAAGGCTGTTCACCCGAGGAAGTGATCACCTACACCTTGGAAAT TCAGGAGGATGAAAATGATAACCTTTTCCACCCAAAATACACTGGAGAGGATTTAACCTGTACTGTGAAAAATCTCAAAAGAAGCACACA GTATAAATTCAGGCTGACTGCTTCTAATACGGAAGGAAAAAGCTGTCCAAGCGAAGTTCTTGTTTGTACGACGAGTCCTGACAGGCCTGG ACCTCCTACCAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTAGTGTCAAATGGGATCCCCCTAAGGACAATGGTGGTTCAGA AATCCTCAAGTACTTGCTAGAGATTACTGATGGAAATTCTGAAGCGAATCAGTGGGAAGTGGCCTACAGTGGGTCGGCTACCGAATACAC CTTCACCCACTTGAAACCAGGCACTTTGTACAAACTCCGAGCATGCTGCATCAGTACCGGCGGACACAGCCAGTGTTCTGAAAGTCTCCC TGTTCGCACACTAAGCATTGCACCAGGTCAATGTCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGAAGTCCACTTAGAGTGGGA TGTTCCTGCATCGGAAAGTGGCTGTGAGGTCTCAGAGTACAGCGTGGAGATGACGGAGCCCGAAGACGTAGCCTCGGAAGTGTACCATGG CCCAGAGCTGGAGTGCACCGTCGGCAACCTGCTTCCTGGAACCGTGTATCGCTTCCGGGTGAGGGCTCTGAATGATGGAGGGTATGGTCC CTATTCTGATGTCTCAGAAATTACCACTGCTGCAGGGCCTCCTGGACAATGCAAAGCACCTTGTATTTCTTGTACACCTGATGGATGTGT CTTAGTGGGTTGGGAGAGTCCTGATAGTTCTGGTGCTGACATCTCAGAGTACAGGTTGGAATGGGGAGAAGATGAAGAATCCTTAGAACT CATTTATCATGGGACAGACACCCGTTTTGAAATAAGAGACCTGTTGCCTGCTGCACAGTATTGCTGTAGACTACAGGCCTTCAATCAAGC AGGGGCAGGGCCGTACAGTGAACTTGTCCTTTGCCAGACGCCAGCGTCTGCCCCTGACCCCGTCTCCACTCTCTGTGTCCTGGAGGAGGA GCCCCTTGATGCCTACCCTGATTCACCTTCTGCGTGCCTTGTACTGAACTGGGAAGAGCCGTGCAATAACGGATCTGAAATCCTTGCTTA CACCATTGATCTAGGAGACACTAGCATTACCGTGGGCAACACCACCATGCATGTTATGAAAGATCTCCTTCCAGAAACCACCTACCGGAT CAGAATTCAGGCTATAAATGAAATTGGAGCTGGACCATTTAGTCAGTTCATTAAAGCAAAAACTCGGCCATTACCACCCTTGCCTCCTAG GCTAGAATGTGCTGCTGCTGGTCCTCAGAGCCTGAAGCTAAAATGGGGAGACAGTAACTCCAAGACACATGCTGCTGAGGACATTGTGTA CACACTACAGCTGGAGGACAGAAACAAGAGGTTTATTTCAATCTACAGAGGACCCAGCCACACCTACAAGGTCCAGAGACTGACGGAATT CACATGCTACTCCTTCAGAATCCAGGCAGCAAGCGAGGCTGGAGAAGGGCCCTTCTCAGAAACCTATACCTTCAGCACAACCAAAAGTGT CCCCCCCACCATCAAAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGTGAAATTTTATGGGAGACGGTACCATCAATGAAAGGTGA CCCTGTTAACTACATTCTGCAGGTATTGGTTGGAAGAGAATCTGAGTACAAACAGGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTC AGGCCTCCAGACCAACACAGACTACAGGTTCCGCGTATGTGCGTGTCGTCGCTGTTTAGACACCTCTCAGGAGCTAAGCGGAGCCTTCAG CCCCTCTGCGGCTTTTGTATTACAACGAAGTGAGGTCATGCTTACAGGGGACATGGGGAGCTTAGATGATCCCAAAATGAAGAGCATGAT GCCTACTGATGAACAGTTTGCAGCCATCATTGTGCTTGGCTTTGCAACTTTGTCCATTTTATTTGCCTTTATATTACAGTACTTCTTAAT GAAGTAAACCCAACAAAACTAGAGGTATGAATTAATGCTACACATTTTAATACACACATTTATTCAGATACTCCCCTTTTTAAAGCCCTT TTGTTTTTTGATTTATATACTCTGTTTTACAGATTTAGCTAGAAAAAAAATGTCAGTGTTTTGGTGCACCTTTTTGAAATGCAAAACTAG GAAAAGGTTAAACTGGATTTTTTTTTTTAAAAAAAAGAAAAAAAAAGAAGAAAAGTATACCAGATACCAAAAGCTAGCTTTCTTATGTTT TCCTTTAAATTTTCAGATTTACCTTCATTCTGTTTTCACTGATGTCTTTTGCAAGCCTTTGATTTTTTTTTTTTTGTTACAGTTTAGTAA TTTATATTCACCAGTCACTTCATATGTCTTGAACATCTGTATCTGTAAACATGAATCACCGTGTGTGTACTTACAGGGCTAGGATTTCAG TGTTGTCAGAGTATTACCACACAGCAACAGCAACATACAGAAGATATGTTCACTCAGATAAGACTGCCCTAAACAACCATTTTGTCACTC AGTTATTTAACTGTGTTTAGCTCATTTAAATCAAAATGTGTACTTTAATCTAAAATGTTTTAATAATCTGTATTTCTTATAATTTTAACA CTATGAGCTGCCTGTATAAGAAATCAAGTAACCAGAATGCACCTATAAATTATGGAGCATTGTAGATTTTACCACATCAATTCATAGCAG TAACTTTAAGAGGGCATTGTGCAATAGTTAGTTGTTTTCTTGTTCAGCTATTTTAAAGGCTGCTTTAACTTGTTTGTTTGTCTTTGTATA TAACTACTTCTAATCTAATCACTAGAGTTATTATATTCTGTTATGTTTGACCAGAATTATATGACAAGAACTGGTGACAGTTTAGTGCCT CTGCCCATTGTCCATGATTTACACTAATTGTGAGCAGTCTTCTTATGTGTCAGCTCATTATTTTTGAAACATTTGCCTTTAGGCTGTTCT TTGAGGTATCAATGAAGTGATTGAATTTCAATACCTTAATTCAGTGCACATAATACTAATGTAACAGCAGATGAAAATTGATAAAACCCA AAAGAGAGTCATCTAAATTTGTAGTTCCTATTTCTGTGGGTTTGCCTGGCCATGGTTGGAGAGGGAATGGTGTTTGATGGTAAACACAGG GTGTTTGGGGATCAAGGAGCCTAGATTCTCTCCCTGGATCTGTCACTAACTTGCTGCGTGACCTGAACACGTCACTTTACCTCTCTGTGC >In-frame_ENST00000350320_ENST00000415807_TCGA-AX-A0J0-11A_SEPT7_chr7_35840882_+_FNDC3B_chr3_172046741_length(amino acids)=833AA_start in transcript=115_stop in transcript=2616 MRNRRRRLWRIGGLRSAGAGRGGGEGMSVSARSAAAEERSVNSSTMGGKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGTSG YSQEVVCYTLGNIPQMPSAPRLVRAGITWVTLQWSKPEGCSPEEVITYTLEIQEDENDNLFHPKYTGEDLTCTVKNLKRSTQYKFRLTAS NTEGKSCPSEVLVCTTSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYSGSATEYTFTHLKPGT LYKLRACCISTGGHSQCSESLPVRTLSIAPGQCRPPRVLGRPKHKEVHLEWDVPASESGCEVSEYSVEMTEPEDVASEVYHGPELECTVG NLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSGADISEYRLEWGEDEESLELIYHGTDTR FEIRDLLPAAQYCCRLQAFNQAGAGPYSELVLCQTPASAPDPVSTLCVLEEEPLDAYPDSPSACLVLNWEEPCNNGSEILAYTIDLGDTS ITVGNTTMHVMKDLLPETTYRIRIQAINEIGAGPFSQFIKAKTRPLPPLPPRLECAAAGPQSLKLKWGDSNSKTHAAEDIVYTLQLEDRN KRFISIYRGPSHTYKVQRLTEFTCYSFRIQAASEAGEGPFSETYTFSTTKSVPPTIKAPRVTQLEGNSCEILWETVPSMKGDPVNYILQV LVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCACRRCLDTSQELSGAFSPSAAFVLQRSEVMLTGDMGSLDDPKMKSMMPTDEQFAA -------------------------------------------------------------- >In-frame_ENST00000350320_ENST00000336824_TCGA-AX-A0J0-11A_SEPT7_chr7_35840882_+_FNDC3B_chr3_172046741_length(transcript)=6807nt_BP=256nt AGCCTCGTCTGAGGGGGCGGGGGACGGAGGAGGGAGCGGGAGTCGAGCGAGAGCCTGTGGAGGAGTCCGCCTGCTGTAGCGTGCGTAAGC AAGGCAGCTACGCCGGGCGGCTACGCTGCGGAATCGGCGTAGGCGCCTTTGGAGAATCGGCGGGCTGCGCTCCGCTGGGGCTGGTCGCGG AGGGGGGGAGGGGATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGGGTGGAAAAAGAAATAG TGGTTTCAGACAGTGCTTCTTCGGGAGCCAGAAGCACTGCAAGTTGACAAAGCTTTGTCCGGCAATGGGGTACACATTCAGGCTGGCCGC TCGAAACGACATTGGTACCAGTGGTTATAGCCAAGAGGTGGTGTGCTACACATTAGGAAATATCCCTCAGATGCCTTCTGCACCAAGGCT GGTTCGAGCTGGCATCACATGGGTCACGTTGCAGTGGAGTAAGCCAGAAGGCTGTTCACCCGAGGAAGTGATCACCTACACCTTGGAAAT TCAGGAGGATGAAAATGATAACCTTTTCCACCCAAAATACACTGGAGAGGATTTAACCTGTACTGTGAAAAATCTCAAAAGAAGCACACA GTATAAATTCAGGCTGACTGCTTCTAATACGGAAGGAAAAAGCTGTCCAAGCGAAGTTCTTGTTTGTACGACGAGTCCTGACAGGCCTGG ACCTCCTACCAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTAGTGTCAAATGGGATCCCCCTAAGGACAATGGTGGTTCAGA AATCCTCAAGTACTTGCTAGAGATTACTGATGGAAATTCTGAAGCGAATCAGTGGGAAGTGGCCTACAGTGGGTCGGCTACCGAATACAC CTTCACCCACTTGAAACCAGGCACTTTGTACAAACTCCGAGCATGCTGCATCAGTACCGGCGGACACAGCCAGTGTTCTGAAAGTCTCCC TGTTCGCACACTAAGCATTGCACCAGGTCAATGTCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGAAGTCCACTTAGAGTGGGA TGTTCCTGCATCGGAAAGTGGCTGTGAGGTCTCAGAGTACAGCGTGGAGATGACGGAGCCCGAAGACGTAGCCTCGGAAGTGTACCATGG CCCAGAGCTGGAGTGCACCGTCGGCAACCTGCTTCCTGGAACCGTGTATCGCTTCCGGGTGAGGGCTCTGAATGATGGAGGGTATGGTCC CTATTCTGATGTCTCAGAAATTACCACTGCTGCAGGGCCTCCTGGACAATGCAAAGCACCTTGTATTTCTTGTACACCTGATGGATGTGT CTTAGTGGGTTGGGAGAGTCCTGATAGTTCTGGTGCTGACATCTCAGAGTACAGGTTGGAATGGGGAGAAGATGAAGAATCCTTAGAACT CATTTATCATGGGACAGACACCCGTTTTGAAATAAGAGACCTGTTGCCTGCTGCACAGTATTGCTGTAGACTACAGGCCTTCAATCAAGC AGGGGCAGGGCCGTACAGTGAACTTGTCCTTTGCCAGACGCCAGCGTCTGCCCCTGACCCCGTCTCCACTCTCTGTGTCCTGGAGGAGGA GCCCCTTGATGCCTACCCTGATTCACCTTCTGCGTGCCTTGTACTGAACTGGGAAGAGCCGTGCAATAACGGATCTGAAATCCTTGCTTA CACCATTGATCTAGGAGACACTAGCATTACCGTGGGCAACACCACCATGCATGTTATGAAAGATCTCCTTCCAGAAACCACCTACCGGAT CAGAATTCAGGCTATAAATGAAATTGGAGCTGGACCATTTAGTCAGTTCATTAAAGCAAAAACTCGGCCATTACCACCCTTGCCTCCTAG GCTAGAATGTGCTGCTGCTGGTCCTCAGAGCCTGAAGCTAAAATGGGGAGACAGTAACTCCAAGACACATGCTGCTGAGGACATTGTGTA CACACTACAGCTGGAGGACAGAAACAAGAGGTTTATTTCAATCTACAGAGGACCCAGCCACACCTACAAGGTCCAGAGACTGACGGAATT CACATGCTACTCCTTCAGAATCCAGGCAGCAAGCGAGGCTGGAGAAGGGCCCTTCTCAGAAACCTATACCTTCAGCACAACCAAAAGTGT CCCCCCCACCATCAAAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGTGAAATTTTATGGGAGACGGTACCATCAATGAAAGGTGA CCCTGTTAACTACATTCTGCAGGTATTGGTTGGAAGAGAATCTGAGTACAAACAGGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTC AGGCCTCCAGACCAACACAGACTACAGGTTCCGCGTATGTGCGTGTCGTCGCTGTTTAGACACCTCTCAGGAGCTAAGCGGAGCCTTCAG CCCCTCTGCGGCTTTTGTATTACAACGAAGTGAGGTCATGCTTACAGGGGACATGGGGAGCTTAGATGATCCCAAAATGAAGAGCATGAT GCCTACTGATGAACAGTTTGCAGCCATCATTGTGCTTGGCTTTGCAACTTTGTCCATTTTATTTGCCTTTATATTACAGTACTTCTTAAT GAAGTAAACCCAACAAAACTAGAGGTATGAATTAATGCTACACATTTTAATACACACATTTATTCAGATACTCCCCTTTTTAAAGCCCTT TTGTTTTTTGATTTATATACTCTGTTTTACAGATTTAGCTAGAAAAAAAATGTCAGTGTTTTGGTGCACCTTTTTGAAATGCAAAACTAG GAAAAGGTTAAACTGGATTTTTTTTTTTAAAAAAAAGAAAAAAAAAGAAGAAAAGTATACCAGATACCAAAAGCTAGCTTTCTTATGTTT TCCTTTAAATTTTCAGATTTACCTTCATTCTGTTTTCACTGATGTCTTTTGCAAGCCTTTGATTTTTTTTTTTTTGTTACAGTTTAGTAA TTTATATTCACCAGTCACTTCATATGTCTTGAACATCTGTATCTGTAAACATGAATCACCGTGTGTGTACTTACAGGGCTAGGATTTCAG TGTTGTCAGAGTATTACCACACAGCAACAGCAACATACAGAAGATATGTTCACTCAGATAAGACTGCCCTAAACAACCATTTTGTCACTC AGTTATTTAACTGTGTTTAGCTCATTTAAATCAAAATGTGTACTTTAATCTAAAATGTTTTAATAATCTGTATTTCTTATAATTTTAACA CTATGAGCTGCCTGTATAAGAAATCAAGTAACCAGAATGCACCTATAAATTATGGAGCATTGTAGATTTTACCACATCAATTCATAGCAG TAACTTTAAGAGGGCATTGTGCAATAGTTAGTTGTTTTCTTGTTCAGCTATTTTAAAGGCTGCTTTAACTTGTTTGTTTGTCTTTGTATA TAACTACTTCTAATCTAATCACTAGAGTTATTATATTCTGTTATGTTTGACCAGAATTATATGACAAGAACTGGTGACAGTTTAGTGCCT CTGCCCATTGTCCATGATTTACACTAATTGTGAGCAGTCTTCTTATGTGTCAGCTCATTATTTTTGAAACATTTGCCTTTAGGCTGTTCT TTGAGGTATCAATGAAGTGATTGAATTTCAATACCTTAATTCAGTGCACATAATACTAATGTAACAGCAGATGAAAATTGATAAAACCCA AAAGAGAGTCATCTAAATTTGTAGTTCCTATTTCTGTGGGTTTGCCTGGCCATGGTTGGAGAGGGAATGGTGTTTGATGGTAAACACAGG GTGTTTGGGGATCAAGGAGCCTAGATTCTCTCCCTGGATCTGTCACTAACTTGCTGCGTGACCTGAACACGTCACTTTACCTCTCTGTGC CTCAGTTTTCCCATGCATGAAAAATAAAATAAAATAAAACGGGGATTCTAATGTTTGTAAGTGCTTTGAGATCTTTGACCAACAGGTGCT ATTGGAGTGCAAAGTGTTACTCTTACGTGTTTATTTTGAGTCATGAGATAATCAATTTTAACCCAAAGTCATTGGATTATTTATATGAAG TCCATAATGTTCGAGTACCTCAGGGACATTTAAGAGTTGGAGGTGCAAATATATTCCAAAAGGGTGCAACAGACACAGTGTATCCCCCTG CTTCTGTTTTTGTATATTTTTGCTACTTGGTTTTTCTTGATCATAGCTATTTTGTGCTTGATCTTTATTGTCTAAGATGCAGTATCCTGT ACTAGCTTATAATATTCCCATACCAAAGTCATGGGGAAACAAACATTATTTTGTTTTTGGTTTATTTATACTATATTCTGCATACAGTAC TTTAAATGCCAATTACAGTGCAATCTTTATTTATTGTAAAATTTTTTAAGTGTACTTATGTACTAATTTTCCCTTGTAGCATGTTATATT TTTGTGTTTTATACTTTTGTAATTTTAGGTCAGTCTTGTTCCTTGGCAACATCTGTAGTATTATTAATCTTCTGACATTTTCTTATGTTT TTAAAAAGATAAGAGCATCTAGTGCATTAAATGCCAAAAAAAAAATACATTATCAGTGATTGAAACGTTTACATGTACCCAAAAACCATA ATCATCTCTTGGAAGAAAATGCTGAGATCAATGAATTATTCTGTGTGCCTATATTGACGTAGTGAGTACTAGAGAGTTCTGTATTTTATT ATTGACTATAATAATTAGTTTAATTAGCTTTGCAAACTGATGGCATCAAGGTAAATATATTTTTGCCAAAGTTCTGGCCTTCCAAAACTC ACCCCCTTATTTAAATGTGTGCTATGACCCACTATGACCACAGCATCTGCATTTTCTAAAAAATTCCATGCAGGTGTTTTGGGGAGAGGT ATTTTTTAAGCAATGAAAATTCAACTGAGTACAAAGCCCCCTCTTGGGGGGTTGGGGAAGTCTCTTTTTTGAAACACTTCAGAACTGCTG CTATAAAGAAATTCTCTAATTGGTTGAATTTTTTTTTTAAGTAAATAGTACTTTAGGCCAAAATTTATATGAATATTTGATCTTCTTGAG ATTTTCATACTATCATTTAACCACCAGGAAGCTGAAGTGTGTGAAGTACAAAGCTGACAGCACTTTATTTTATTGCTCTCCATTATTTGG TATTCATTATATTCCTTCAGTCAGAAAATTATTACTCTCTATGGCACTGTTTTTTATCACAAATATGTATATGTGATATTGATATATAAC TATATATATTGCCATCACACACGAACAATAAAATAAAGTGTTCTATTAACCTGATCTCTTTGCCCTTTTGCTATGTGAGGAGTGAATGAG TGGCCTTCTGATGCTCTGACTCTTCTCTGTATGTCAAACTCATCCCTGGCACAAGAAATTCCAGTCATGTGAAGCAAACTGCCCTTTGTC CTCAAAGAAATTGTTGAAAAAGAAAACTTTTTAAAGAGATTTTTTGCATATTCTCTGCCTTGTTCTTATCAACTTGAAATGTTGGCATTT TCTAACCTTGTTTTGTTGGCTACAATAATTCAGTATTCATGTCAAAATTGAGAAGTGCCCTAATTGAATGTGTTTGAATGTTATCCTTGC ACAATTCTTTAAATTGAAAGATAAAATGTTTTACCTCACTGTTGGACATACATTCCAAGCTTTTCAACTCTAGGAGAAAAAGAAAATCAT GTTTTCCTGTATTGTAAATTTTAGACTATTTCATATACATTGTATTAAAACTGCCATATCAATTTTAATGTATAGATTTTGCAAATATTA TGCTATATGTAATACCTAACTGTATCTGTAGTGTATATGTAATATATTTATGCCCAATAAATGTTTTAATTCTTTCTGACTTAAATAGGG TTTTTCTGCCATGACTAGGATTGCTTTTGTTGTTGTTGTTGTTGTTTCTTTCTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGC CAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCCAGCTCCCAGGTTCAAGTGATTCCCCTGCCTCAGCCTCCCAAGTAGC TGGGGATTACAGGCACTCGCCACCATGCCCGGATAATTTTTTTTTTTTTTTTGAGTTGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCA GTGACCCAATCTCGGCTCACTGCAAGCTCCACCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTG CCCGCCACCACGCCCGGCTAATTTTTTTAATTTTAGTAGAGTCGGGGTTTCACCATGTTGGCCAAGATGGTCTCGATCTGACCTCGTGAT CTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCCCCGCACCCAGCCTTATTCTTCCCTTTTAAATACTTAAAGCACA TTCAGATTAGTTGAAAATTCACGTGTTTTTGGAGGCCAGGCAGGTGGCCTTCTGCAGAGACAGCAGCAGCTCAGCTCTTGCTGACCAAGG CCTTGGAGGACTGTGAGCCACAATCACATATGTCCATGTTTCAAAAGAAGCTAAATATCCAGATTTCCTCCATGGGCCAACTAAAAGGTG ATTGTGGACTATACAGGCTGCCAGTTTAATCCTTTATCAGAGTCTCTGTGGATAATGTACCTTGTTGCCTAATACTTTATCTGTCTACCA AAACTCAGTCCAGATCTCCCTCTGTTCACCTGGCACACTGGGTGCTTCCTCTCCCCTGACGAACTCTATAGAGTGTTCATGTCCTTTCCT >In-frame_ENST00000350320_ENST00000336824_TCGA-AX-A0J0-11A_SEPT7_chr7_35840882_+_FNDC3B_chr3_172046741_length(amino acids)=833AA_start in transcript=115_stop in transcript=2616 MRNRRRRLWRIGGLRSAGAGRGGGEGMSVSARSAAAEERSVNSSTMGGKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGTSG YSQEVVCYTLGNIPQMPSAPRLVRAGITWVTLQWSKPEGCSPEEVITYTLEIQEDENDNLFHPKYTGEDLTCTVKNLKRSTQYKFRLTAS NTEGKSCPSEVLVCTTSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYSGSATEYTFTHLKPGT LYKLRACCISTGGHSQCSESLPVRTLSIAPGQCRPPRVLGRPKHKEVHLEWDVPASESGCEVSEYSVEMTEPEDVASEVYHGPELECTVG NLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSGADISEYRLEWGEDEESLELIYHGTDTR FEIRDLLPAAQYCCRLQAFNQAGAGPYSELVLCQTPASAPDPVSTLCVLEEEPLDAYPDSPSACLVLNWEEPCNNGSEILAYTIDLGDTS ITVGNTTMHVMKDLLPETTYRIRIQAINEIGAGPFSQFIKAKTRPLPPLPPRLECAAAGPQSLKLKWGDSNSKTHAAEDIVYTLQLEDRN KRFISIYRGPSHTYKVQRLTEFTCYSFRIQAASEAGEGPFSETYTFSTTKSVPPTIKAPRVTQLEGNSCEILWETVPSMKGDPVNYILQV LVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCACRRCLDTSQELSGAFSPSAAFVLQRSEVMLTGDMGSLDDPKMKSMMPTDEQFAA -------------------------------------------------------------- >In-frame_ENST00000350320_ENST00000416957_TCGA-AX-A0J0-11A_SEPT7_chr7_35840882_+_FNDC3B_chr3_172046741_length(transcript)=2623nt_BP=256nt AGCCTCGTCTGAGGGGGCGGGGGACGGAGGAGGGAGCGGGAGTCGAGCGAGAGCCTGTGGAGGAGTCCGCCTGCTGTAGCGTGCGTAAGC AAGGCAGCTACGCCGGGCGGCTACGCTGCGGAATCGGCGTAGGCGCCTTTGGAGAATCGGCGGGCTGCGCTCCGCTGGGGCTGGTCGCGG AGGGGGGGAGGGGATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGGGTGGAAAAAGAAATAG TGGTTTCAGACAGTGCTTCTTCGGGAGCCAGAAGCACTGCAAGTTGACAAAGCTTTGTCCGGCAATGGGGTACACATTCAGGCTGGCCGC TCGAAACGACATTGGTACCAGTGGTTATAGCCAAGAGGTGGTGTGCTACACATTAGGAAATATCCCTCAGATGCCTTCTGCACCAAGGCT GGTTCGAGCTGGCATCACATGGGTCACGTTGCAGTGGAGTAAGCCAGAAGGCTGTTCACCCGAGGAAGTGATCACCTACACCTTGGAAAT TCAGGAGGATGAAAATGATAACCTTTTCCACCCAAAATACACTGGAGAGGATTTAACCTGTACTGTGAAAAATCTCAAAAGAAGCACACA GTATAAATTCAGGCTGACTGCTTCTAATACGGAAGGAAAAAGCTGTCCAAGCGAAGTTCTTGTTTGTACGACGAGTCCTGACAGGCCTGG ACCTCCTACCAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTAGTGTCAAATGGGATCCCCCTAAGGACAATGGTGGTTCAGA AATCCTCAAGTACTTGCTAGAGATTACTGATGGAAATTCTGAAGCGAATCAGTGGGAAGTGGCCTACAGTGGGTCGGCTACCGAATACAC CTTCACCCACTTGAAACCAGGCACTTTGTACAAACTCCGAGCATGCTGCATCAGTACCGGCGGACACAGCCAGTGTTCTGAAAGTCTCCC TGTTCGCACACTAAGCATTGCACCAGGTCAATGTCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGAAGTCCACTTAGAGTGGGA TGTTCCTGCATCGGAAAGTGGCTGTGAGGTCTCAGAGTACAGCGTGGAGATGACGGAGCCCGAAGACGTAGCCTCGGAAGTGTACCATGG CCCAGAGCTGGAGTGCACCGTCGGCAACCTGCTTCCTGGAACCGTGTATCGCTTCCGGGTGAGGGCTCTGAATGATGGAGGGTATGGTCC CTATTCTGATGTCTCAGAAATTACCACTGCTGCAGGGCCTCCTGGACAATGCAAAGCACCTTGTATTTCTTGTACACCTGATGGATGTGT CTTAGTGGGTTGGGAGAGTCCTGATAGTTCTGGTGCTGACATCTCAGAGTACAGGTTGGAATGGGGAGAAGATGAAGAATCCTTAGAACT CATTTATCATGGGACAGACACCCGTTTTGAAATAAGAGACCTGTTGCCTGCTGCACAGTATTGCTGTAGACTACAGGCCTTCAATCAAGC AGGGGCAGGGCCGTACAGTGAACTTGTCCTTTGCCAGACGCCAGCGTCTGCCCCTGACCCCGTCTCCACTCTCTGTGTCCTGGAGGAGGA GCCCCTTGATGCCTACCCTGATTCACCTTCTGCGTGCCTTGTACTGAACTGGGAAGAGCCGTGCAATAACGGATCTGAAATCCTTGCTTA CACCATTGATCTAGGAGACACTAGCATTACCGTGGGCAACACCACCATGCATGTTATGAAAGATCTCCTTCCAGAAACCACCTACCGGAT CAGAATTCAGGCTATAAATGAAATTGGAGCTGGACCATTTAGTCAGTTCATTAAAGCAAAAACTCGGCCATTACCACCCTTGCCTCCTAG GCTAGAATGTGCTGCTGCTGGTCCTCAGAGCCTGAAGCTAAAATGGGGAGACAGTAACTCCAAGACACATGCTGCTGAGGACATTGTGTA CACACTACAGCTGGAGGACAGAAACAAGAGGTTTATTTCAATCTACAGAGGACCCAGCCACACCTACAAGGTCCAGAGACTGACGGAATT CACATGCTACTCCTTCAGAATCCAGGCAGCAAGCGAGGCTGGAGAAGGGCCCTTCTCAGAAACCTATACCTTCAGCACAACCAAAAGTGT CCCCCCCACCATCAAAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGTGAAATTTTATGGGAGACGGTACCATCAATGAAAGGTGA CCCTGTTAACTACATTCTGCAGGTATTGGTTGGAAGAGAATCTGAGTACAAACAGGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTC AGGCCTCCAGACCAACACAGACTACAGGTTCCGCGTATGTGCGTGTCGTCGCTGTTTAGACACCTCTCAGGAGCTAAGCGGAGCCTTCAG CCCCTCTGCGGCTTTTGTATTACAACGAAGTGAGGTCATGCTTACAGGGGACATGGGGAGCTTAGATGATCCCAAAATGAAGAGCATGAT GCCTACTGATGAACAGTTTGCAGCCATCATTGTGCTTGGCTTTGCAACTTTGTCCATTTTATTTGCCTTTATATTACAGTACTTCTTAAT >In-frame_ENST00000350320_ENST00000416957_TCGA-AX-A0J0-11A_SEPT7_chr7_35840882_+_FNDC3B_chr3_172046741_length(amino acids)=833AA_start in transcript=115_stop in transcript=2616 MRNRRRRLWRIGGLRSAGAGRGGGEGMSVSARSAAAEERSVNSSTMGGKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGTSG YSQEVVCYTLGNIPQMPSAPRLVRAGITWVTLQWSKPEGCSPEEVITYTLEIQEDENDNLFHPKYTGEDLTCTVKNLKRSTQYKFRLTAS NTEGKSCPSEVLVCTTSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYSGSATEYTFTHLKPGT LYKLRACCISTGGHSQCSESLPVRTLSIAPGQCRPPRVLGRPKHKEVHLEWDVPASESGCEVSEYSVEMTEPEDVASEVYHGPELECTVG NLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSGADISEYRLEWGEDEESLELIYHGTDTR FEIRDLLPAAQYCCRLQAFNQAGAGPYSELVLCQTPASAPDPVSTLCVLEEEPLDAYPDSPSACLVLNWEEPCNNGSEILAYTIDLGDTS ITVGNTTMHVMKDLLPETTYRIRIQAINEIGAGPFSQFIKAKTRPLPPLPPRLECAAAGPQSLKLKWGDSNSKTHAAEDIVYTLQLEDRN KRFISIYRGPSHTYKVQRLTEFTCYSFRIQAASEAGEGPFSETYTFSTTKSVPPTIKAPRVTQLEGNSCEILWETVPSMKGDPVNYILQV LVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCACRRCLDTSQELSGAFSPSAAFVLQRSEVMLTGDMGSLDDPKMKSMMPTDEQFAA -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SEPT7-FNDC3B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | SEPT7 | chr7:35840882 | chr3:172046741 | ENST00000399034 | + | 1 | 14 | 47_317 | 20.333333333333332 | 439.0 | SEPTIN12 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SEPT7-FNDC3B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SEPT7-FNDC3B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | FNDC3B | C0017612 | Glaucoma, Open-Angle | 1 | CTD_human |
Tgene | FNDC3B | C0022578 | Keratoconus | 1 | CTD_human |
Tgene | FNDC3B | C0023487 | Acute Promyelocytic Leukemia | 1 | CTD_human |
Tgene | FNDC3B | C0271148 | Secondary Open Angle Glaucoma | 1 | CTD_human |
Tgene | FNDC3B | C0339573 | Glaucoma, Primary Open Angle | 1 | CTD_human |