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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RFX1-CCDC107 (FusionGDB2 ID:73223)

Fusion Gene Summary for RFX1-CCDC107

check button Fusion gene summary
Fusion gene informationFusion gene name: RFX1-CCDC107
Fusion gene ID: 73223
HgeneTgene
Gene symbol

RFX1

CCDC107

Gene ID

5989

203260

Gene nameregulatory factor X1coiled-coil domain containing 107
SynonymsEFC|RFXPSEC0222
Cytomap

19p13.12

9p13.3

Type of geneprotein-codingprotein-coding
DescriptionMHC class II regulatory factor RFX1MHC class II regulatory factor RFXenhancer factor Cregulatory factor X, 1 (influences HLA class II expression)trans-acting regulatory factor 1transcription factor RFX1coiled-coil domain-containing protein 107
Modification date2020031320200313
UniProtAcc.

Q8WV48

Ensembl transtripts involved in fusion geneENST00000254325, ENST00000586913, 
ENST00000378407, ENST00000378406, 
ENST00000426546, ENST00000327351, 
ENST00000421582, ENST00000378409, 
Fusion gene scores* DoF score4 X 5 X 3=605 X 3 X 6=90
# samples 57
** MAII scorelog2(5/60*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(7/90*10)=-0.362570079384708
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: RFX1 [Title/Abstract] AND CCDC107 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRFX1(14104337)-CCDC107(35658573), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across RFX1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across CCDC107 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-13-0801-01ARFX1chr19

14104337

-CCDC107chr9

35658573

+
ChimerDB4OVTCGA-13-0801RFX1chr19

14104336

-CCDC107chr9

35658572

+
ChimerDB4OVTCGA-13-0801-01ARFX1chr19

14104337

-CCDC107chr9

35658573

+
ChimerDB4OVTCGA-13-0801-01ARFX1chr19

14116915

-CCDC107chr9

35658573

+
ChimerDB4OVTCGA-13-0801-01ARFX1chr19

14104337

-CCDC107chr9

35658573

+


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Fusion Gene ORF analysis for RFX1-CCDC107

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000254325ENST00000378407RFX1chr19

14104337

-CCDC107chr9

35658573

+
In-frameENST00000254325ENST00000378406RFX1chr19

14104337

-CCDC107chr9

35658573

+
In-frameENST00000254325ENST00000426546RFX1chr19

14104337

-CCDC107chr9

35658573

+
In-frameENST00000254325ENST00000327351RFX1chr19

14104337

-CCDC107chr9

35658573

+
In-frameENST00000254325ENST00000421582RFX1chr19

14104337

-CCDC107chr9

35658573

+
In-frameENST00000254325ENST00000378409RFX1chr19

14104337

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000378407RFX1chr19

14104337

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000378406RFX1chr19

14104337

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000426546RFX1chr19

14104337

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000327351RFX1chr19

14104337

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000421582RFX1chr19

14104337

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000378409RFX1chr19

14104337

-CCDC107chr9

35658573

+
In-frameENST00000254325ENST00000378407RFX1chr19

14104336

-CCDC107chr9

35658572

+
In-frameENST00000254325ENST00000378406RFX1chr19

14104336

-CCDC107chr9

35658572

+
In-frameENST00000254325ENST00000426546RFX1chr19

14104336

-CCDC107chr9

35658572

+
In-frameENST00000254325ENST00000327351RFX1chr19

14104336

-CCDC107chr9

35658572

+
In-frameENST00000254325ENST00000421582RFX1chr19

14104336

-CCDC107chr9

35658572

+
In-frameENST00000254325ENST00000378409RFX1chr19

14104336

-CCDC107chr9

35658572

+
intron-3CDSENST00000586913ENST00000378407RFX1chr19

14104336

-CCDC107chr9

35658572

+
intron-3CDSENST00000586913ENST00000378406RFX1chr19

14104336

-CCDC107chr9

35658572

+
intron-3CDSENST00000586913ENST00000426546RFX1chr19

14104336

-CCDC107chr9

35658572

+
intron-3CDSENST00000586913ENST00000327351RFX1chr19

14104336

-CCDC107chr9

35658572

+
intron-3CDSENST00000586913ENST00000421582RFX1chr19

14104336

-CCDC107chr9

35658572

+
intron-3CDSENST00000586913ENST00000378409RFX1chr19

14104336

-CCDC107chr9

35658572

+
5UTR-3CDSENST00000254325ENST00000378407RFX1chr19

14116915

-CCDC107chr9

35658573

+
5UTR-3CDSENST00000254325ENST00000378406RFX1chr19

14116915

-CCDC107chr9

35658573

+
5UTR-3CDSENST00000254325ENST00000426546RFX1chr19

14116915

-CCDC107chr9

35658573

+
5UTR-3CDSENST00000254325ENST00000327351RFX1chr19

14116915

-CCDC107chr9

35658573

+
5UTR-3CDSENST00000254325ENST00000421582RFX1chr19

14116915

-CCDC107chr9

35658573

+
5UTR-3CDSENST00000254325ENST00000378409RFX1chr19

14116915

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000378407RFX1chr19

14116915

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000378406RFX1chr19

14116915

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000426546RFX1chr19

14116915

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000327351RFX1chr19

14116915

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000421582RFX1chr19

14116915

-CCDC107chr9

35658573

+
intron-3CDSENST00000586913ENST00000378409RFX1chr19

14116915

-CCDC107chr9

35658573

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000254325RFX1chr1914104337-ENST00000378407CCDC107chr935658573+1271554235867210
ENST00000254325RFX1chr1914104337-ENST00000378406CCDC107chr935658573+1398554235861208
ENST00000254325RFX1chr1914104337-ENST00000426546CCDC107chr935658573+16245542351299354
ENST00000254325RFX1chr1914104337-ENST00000327351CCDC107chr935658573+1189554235915226
ENST00000254325RFX1chr1914104337-ENST00000421582CCDC107chr935658573+1709554235807190
ENST00000254325RFX1chr1914104337-ENST00000378409CCDC107chr935658573+12195542351218328
ENST00000254325RFX1chr1914104336-ENST00000378407CCDC107chr935658572+1271554235867210
ENST00000254325RFX1chr1914104336-ENST00000378406CCDC107chr935658572+1398554235861208
ENST00000254325RFX1chr1914104336-ENST00000426546CCDC107chr935658572+16245542351299354
ENST00000254325RFX1chr1914104336-ENST00000327351CCDC107chr935658572+1189554235915226
ENST00000254325RFX1chr1914104336-ENST00000421582CCDC107chr935658572+1709554235807190
ENST00000254325RFX1chr1914104336-ENST00000378409CCDC107chr935658572+12195542351218328

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000254325ENST00000378407RFX1chr1914104337-CCDC107chr935658573+0.0165328590.98346716
ENST00000254325ENST00000378406RFX1chr1914104337-CCDC107chr935658573+0.0195335220.9804664
ENST00000254325ENST00000426546RFX1chr1914104337-CCDC107chr935658573+0.0231378230.97686225
ENST00000254325ENST00000327351RFX1chr1914104337-CCDC107chr935658573+0.0235027690.9764972
ENST00000254325ENST00000421582RFX1chr1914104337-CCDC107chr935658573+0.0240233370.97597665
ENST00000254325ENST00000378409RFX1chr1914104337-CCDC107chr935658573+0.0334867460.9665132
ENST00000254325ENST00000378407RFX1chr1914104336-CCDC107chr935658572+0.0165328590.98346716
ENST00000254325ENST00000378406RFX1chr1914104336-CCDC107chr935658572+0.0195335220.9804664
ENST00000254325ENST00000426546RFX1chr1914104336-CCDC107chr935658572+0.0231378230.97686225
ENST00000254325ENST00000327351RFX1chr1914104336-CCDC107chr935658572+0.0235027690.9764972
ENST00000254325ENST00000421582RFX1chr1914104336-CCDC107chr935658572+0.0240233370.97597665
ENST00000254325ENST00000378409RFX1chr1914104336-CCDC107chr935658572+0.0334867460.9665132

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Fusion Genomic Features for RFX1-CCDC107


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
RFX1chr1914116914-CCDC107chr935658572+2.34E-060.9999976
RFX1chr1914104336-CCDC107chr935658572+3.06E-070.99999964
RFX1chr1914104336-CCDC107chr935658572+3.06E-070.99999964
RFX1chr1914116914-CCDC107chr935658572+2.34E-060.9999976
RFX1chr1914104336-CCDC107chr935658572+3.06E-070.99999964
RFX1chr1914104336-CCDC107chr935658572+3.06E-070.99999964

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RFX1-CCDC107


check button Go to

FGviewer for the breakpoints of chr19:14104337-chr9:35658573

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.CCDC107

Q8WV48

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneCCDC107chr19:14104336chr9:35658572ENST0000032735106104_13435.333333333333336179.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104336chr9:35658572ENST0000037840705104_13435.333333333333336140.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104336chr9:35658572ENST0000037840906104_13435.333333333333336257.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104336chr9:35658572ENST0000042158203104_13435.333333333333336120.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104336chr9:35658572ENST0000042654605104_13435.333333333333336284.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104337chr9:35658573ENST0000032735106104_13435.333333333333336179.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104337chr9:35658573ENST0000037840705104_13435.333333333333336140.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104337chr9:35658573ENST0000037840906104_13435.333333333333336257.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104337chr9:35658573ENST0000042158203104_13435.333333333333336120.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104337chr9:35658573ENST0000042654605104_13435.333333333333336284.0Coiled coilOntology_term=ECO:0000255
TgeneCCDC107chr19:14104336chr9:35658572ENST000003273510665_8535.333333333333336179.0TransmembraneHelical
TgeneCCDC107chr19:14104336chr9:35658572ENST000003784070565_8535.333333333333336140.0TransmembraneHelical
TgeneCCDC107chr19:14104336chr9:35658572ENST000003784090665_8535.333333333333336257.0TransmembraneHelical
TgeneCCDC107chr19:14104336chr9:35658572ENST000004215820365_8535.333333333333336120.0TransmembraneHelical
TgeneCCDC107chr19:14104336chr9:35658572ENST000004265460565_8535.333333333333336284.0TransmembraneHelical
TgeneCCDC107chr19:14104337chr9:35658573ENST000003273510665_8535.333333333333336179.0TransmembraneHelical
TgeneCCDC107chr19:14104337chr9:35658573ENST000003784070565_8535.333333333333336140.0TransmembraneHelical
TgeneCCDC107chr19:14104337chr9:35658573ENST000003784090665_8535.333333333333336257.0TransmembraneHelical
TgeneCCDC107chr19:14104337chr9:35658573ENST000004215820365_8535.333333333333336120.0TransmembraneHelical
TgeneCCDC107chr19:14104337chr9:35658573ENST000004265460565_8535.333333333333336284.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRFX1chr19:14104336chr9:35658572ENST00000254325-221381_411106.33333333333333980.0Compositional biasNote=Gly-rich
HgeneRFX1chr19:14104336chr9:35658572ENST00000254325-221920_936106.33333333333333980.0Compositional biasNote=Asp/Glu-rich (acidic)
HgeneRFX1chr19:14104337chr9:35658573ENST00000254325-221381_411106.33333333333333980.0Compositional biasNote=Gly-rich
HgeneRFX1chr19:14104337chr9:35658573ENST00000254325-221920_936106.33333333333333980.0Compositional biasNote=Asp/Glu-rich (acidic)
HgeneRFX1chr19:14104336chr9:35658572ENST00000254325-221438_513106.33333333333333980.0DNA bindingRFX-type winged-helix
HgeneRFX1chr19:14104337chr9:35658573ENST00000254325-221438_513106.33333333333333980.0DNA bindingRFX-type winged-helix
HgeneRFX1chr19:14104336chr9:35658572ENST00000254325-221744_979106.33333333333333980.0RegionNote=Necessary for dimerization
HgeneRFX1chr19:14104337chr9:35658573ENST00000254325-221744_979106.33333333333333980.0RegionNote=Necessary for dimerization


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Fusion Gene Sequence for RFX1-CCDC107


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000254325_ENST00000378407_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(transcript)=1271nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGAGCTTCTGAACATGAAGCTATGGACCATCCACGAGCTGCTG
CAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGGGAGGCGAGTCTGCTGGAGGTGGAGACAAAGTCTCT
GAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATT
GGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAACCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGG
AGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAAGGAGGGACGACAGCTGAAGGTCGACTAAAACAAAGT

>In-frame_ENST00000254325_ENST00000378407_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(amino acids)=210AA_start in transcript=235_stop in transcript=867
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000378406_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(transcript)=1398nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGTGAGGAGAGCAATGATTCTGTGAATTTTTGGGGAATTTGTG
GCAGGAGGGAGGAATGGGGACATAGGTTGGGAGCCACTGAGTGGACATTTCTTCAGTGTGACTACTCTGGCTGGAGCCCAGCAGGAGCTT
CTGAACATGAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCG
GGAGGCGAGTCTGCTGGAGGTGGAGACAAAGTCTCTGAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCT
GAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAAC
CTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAA

>In-frame_ENST00000254325_ENST00000378406_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(amino acids)=208AA_start in transcript=235_stop in transcript=861
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000426546_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(transcript)=1624nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACTCTGGCTGGAGCCCAGCAGGAGCTTCTGAACAT
GAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGGGAGGCGA
GTCTGCTGGAGGTGGAGACAAAGTCTCTGAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGACTT
CTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAACCTAGCTAC
TTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAAGGAGGGAC
GACAGCTGAAGGTCGACTAAAACAAAGTCTGTTTTCATGATGGAGTGCTCCTGTGTGTTTTTTCGATCCTAGTTGGTTGTACACACCCAT
ACTAGGTGCCTAAGGACAACTGGGCCTTCTTGAAGAGCTGTCCTTATTAGGACAAAAAGAGGCTGCCTTCCAGTGTGACAGCAGAGAAGA
TAGAGGGAGCTCCAGCTCTTTTCCTCGTATTCCTGAGGCCACCAGCATGCCCGCGTTCAGGGCCCAAAAATCCCTTTTCTCATAGCAAAA
CTGAGACAGAAGGGTCTTTCCCAAAAAAAAGAAAAAAAACTTTACTCAAATCCAGTGGAAAAATAAATGATAGAAACTATACACAACATA

>In-frame_ENST00000254325_ENST00000426546_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(amino acids)=354AA_start in transcript=235_stop in transcript=1299
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ
LAQLTQQLAQTEQHLNNLMAQLDPLFERVTTLAGAQQELLNMKLWTIHELLQDSKPDKDMEASEPGEGSGGESAGGGDKVSETGTFLISP

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000327351_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(transcript)=1189nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGCCCAGCAGGAGCTTCTGAACATGAAGCTATGGACCATCCACG
AGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGAGGCCAGCAGACCTCTTCCTGAGGACTTCTGTTTAAAGG
AGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAACCTAGCTACTTCCTGGGAGG
TGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAAGGAGGGACGACAGCTGAAG

>In-frame_ENST00000254325_ENST00000327351_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(amino acids)=226AA_start in transcript=235_stop in transcript=915
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000421582_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(transcript)=1709nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGGTGGGTTTAGCAGAAGTCTGTGCTGGGTCGGGGGAGTTTAGGG
GACAGCAGAAGATACATAACCACTTCTGCCCCCTTTTTTCCCTTATCCCCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAG
ACAGAGCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGTGAGGAGAGCAATGATTCTGTGAATTTTTGGGGAAT
TTGTGGCAGGAGGGAGGAATGGGGACATAGGTTGGGAGCCACTGAGTGGACATTTCTTCAGTGTGACTACTCTGGCTGGAGCCCAGCAGG
AGCTTCTGAACATGAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAG
GCTCGGGAGGCGAGTCTGCTGGAGGTGGAGACAAAGTCTCTGAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTC
TTCCTGAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACAT
GGAACCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCT
GGGAAGGAGGGACGACAGCTGAAGGTCGACTAAAACAAAGTCTGTTTTCATGATGGAGTGCTCCTGTGTGTTTTTTCGATCCTAGTTGGT
TGTACACACCCATACTAGGTGCCTAAGGACAACTGGGCCTTCTTGAAGAGCTGTCCTTATTAGGACAAAAAGAGGCTGCCTTCCAGTGTG

>In-frame_ENST00000254325_ENST00000421582_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(amino acids)=190AA_start in transcript=235_stop in transcript=807
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSGGF

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000378409_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(transcript)=1219nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACTCTGGCTGGAGCCCAGCAGGAGCTTCTGAACAT
GAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGAGGCCAGCAGACCTCTTCC
TGAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAA
CCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGA

>In-frame_ENST00000254325_ENST00000378409_TCGA-13-0801-01A_RFX1_chr19_14104337_-_CCDC107_chr9_35658573_length(amino acids)=328AA_start in transcript=235_stop in transcript=1218
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ
LAQLTQQLAQTEQHLNNLMAQLDPLFERVTTLAGAQQELLNMKLWTIHELLQDSKPDKDMEASEPEASRPLPEDFCLKEDEEEIGDSQAW

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000378407_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(transcript)=1271nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGAGCTTCTGAACATGAAGCTATGGACCATCCACGAGCTGCTG
CAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGGGAGGCGAGTCTGCTGGAGGTGGAGACAAAGTCTCT
GAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATT
GGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAACCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGG
AGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAAGGAGGGACGACAGCTGAAGGTCGACTAAAACAAAGT

>In-frame_ENST00000254325_ENST00000378407_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(amino acids)=210AA_start in transcript=235_stop in transcript=867
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000378406_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(transcript)=1398nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGTGAGGAGAGCAATGATTCTGTGAATTTTTGGGGAATTTGTG
GCAGGAGGGAGGAATGGGGACATAGGTTGGGAGCCACTGAGTGGACATTTCTTCAGTGTGACTACTCTGGCTGGAGCCCAGCAGGAGCTT
CTGAACATGAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCG
GGAGGCGAGTCTGCTGGAGGTGGAGACAAAGTCTCTGAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCT
GAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAAC
CTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAA

>In-frame_ENST00000254325_ENST00000378406_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(amino acids)=208AA_start in transcript=235_stop in transcript=861
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000426546_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(transcript)=1624nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACTCTGGCTGGAGCCCAGCAGGAGCTTCTGAACAT
GAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGGGAGGCGA
GTCTGCTGGAGGTGGAGACAAAGTCTCTGAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGACTT
CTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAACCTAGCTAC
TTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAAGGAGGGAC
GACAGCTGAAGGTCGACTAAAACAAAGTCTGTTTTCATGATGGAGTGCTCCTGTGTGTTTTTTCGATCCTAGTTGGTTGTACACACCCAT
ACTAGGTGCCTAAGGACAACTGGGCCTTCTTGAAGAGCTGTCCTTATTAGGACAAAAAGAGGCTGCCTTCCAGTGTGACAGCAGAGAAGA
TAGAGGGAGCTCCAGCTCTTTTCCTCGTATTCCTGAGGCCACCAGCATGCCCGCGTTCAGGGCCCAAAAATCCCTTTTCTCATAGCAAAA
CTGAGACAGAAGGGTCTTTCCCAAAAAAAAGAAAAAAAACTTTACTCAAATCCAGTGGAAAAATAAATGATAGAAACTATACACAACATA

>In-frame_ENST00000254325_ENST00000426546_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(amino acids)=354AA_start in transcript=235_stop in transcript=1299
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ
LAQLTQQLAQTEQHLNNLMAQLDPLFERVTTLAGAQQELLNMKLWTIHELLQDSKPDKDMEASEPGEGSGGESAGGGDKVSETGTFLISP

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000327351_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(transcript)=1189nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGCCCAGCAGGAGCTTCTGAACATGAAGCTATGGACCATCCACG
AGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGAGGCCAGCAGACCTCTTCCTGAGGACTTCTGTTTAAAGG
AGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAACCTAGCTACTTCCTGGGAGG
TGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGAAGGAGGGACGACAGCTGAAG

>In-frame_ENST00000254325_ENST00000327351_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(amino acids)=226AA_start in transcript=235_stop in transcript=915
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ

--------------------------------------------------------------
>In-frame_ENST00000254325_ENST00000421582_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(transcript)=1709nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGGTGGGTTTAGCAGAAGTCTGTGCTGGGTCGGGGGAGTTTAGGG
GACAGCAGAAGATACATAACCACTTCTGCCCCCTTTTTTCCCTTATCCCCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAG
ACAGAGCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGTGAGGAGAGCAATGATTCTGTGAATTTTTGGGGAAT
TTGTGGCAGGAGGGAGGAATGGGGACATAGGTTGGGAGCCACTGAGTGGACATTTCTTCAGTGTGACTACTCTGGCTGGAGCCCAGCAGG
AGCTTCTGAACATGAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGGTGAAG
GCTCGGGAGGCGAGTCTGCTGGAGGTGGAGACAAAGTCTCTGAAACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCAGACCTC
TTCCTGAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACAT
GGAACCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCT
GGGAAGGAGGGACGACAGCTGAAGGTCGACTAAAACAAAGTCTGTTTTCATGATGGAGTGCTCCTGTGTGTTTTTTCGATCCTAGTTGGT
TGTACACACCCATACTAGGTGCCTAAGGACAACTGGGCCTTCTTGAAGAGCTGTCCTTATTAGGACAAAAAGAGGCTGCCTTCCAGTGTG

>In-frame_ENST00000254325_ENST00000421582_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(amino acids)=190AA_start in transcript=235_stop in transcript=807
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSGGF

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>In-frame_ENST00000254325_ENST00000378409_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(transcript)=1219nt_BP=554nt
CACGGTAGTCGTGGCGACCAAGCAACCCGGCAACGCGAGTCAACAACAACAACCGCCCGGCCGACCCCCACCCCCACCCCCCAGGCCCGG
CCCGGGGACCCCAGCACGTCCCGTCCCCTTCCCAACATCGACTCCGAGACCTCCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCG
GAGGAATTAAAAAAAAAAAAAAGCCTTATTTATTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGC
CCCGCCACCATCCCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAGCCCCCGCA
GCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGCCCCAGGCACAGCCACCGGGTGGCCAGAA
GCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCAGCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGT
GGTCACTGTCTCTGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGAC
CCGGGCCGGGTCGCTGCCTCTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAAC
TGCGGTTCTCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCTGGCCCAGACAGA
GCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACTCTGGCTGGAGCCCAGCAGGAGCTTCTGAACAT
GAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCAAGCCGGACAAGGATATGGAGGCTTCAGAACCAGAGGCCAGCAGACCTCTTCC
TGAGGACTTCTGTTTAAAGGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGGAA
CCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCCTTGGCTGGGA

>In-frame_ENST00000254325_ENST00000378409_TCGA-13-0801_RFX1_chr19_14104336_-_CCDC107_chr9_35658572_length(amino acids)=328AA_start in transcript=235_stop in transcript=1218
MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGA
PTPSPAPQQYIVVTVSGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGALYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQ
LAQLTQQLAQTEQHLNNLMAQLDPLFERVTTLAGAQQELLNMKLWTIHELLQDSKPDKDMEASEPEASRPLPEDFCLKEDEEEIGDSQAW

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Fusion Gene PPI Analysis for RFX1-CCDC107


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RFX1-CCDC107


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RFX1-CCDC107


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource