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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RIF1-XPO1 (FusionGDB2 ID:73622) |
Fusion Gene Summary for RIF1-XPO1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RIF1-XPO1 | Fusion gene ID: 73622 | Hgene | Tgene | Gene symbol | RIF1 | XPO1 | Gene ID | 55791 | 7514 |
Gene name | ligand dependent nuclear receptor interacting factor 1 | exportin 1 | |
Synonyms | C1orf103|HBiX1|RIF1 | CRM-1|CRM1|emb|exp1 | |
Cytomap | 1p13.3 | 2p15 | |
Type of gene | protein-coding | protein-coding | |
Description | ligand-dependent nuclear receptor-interacting factor 1HP1-binding protein enriched in inactive X chromosome protein 1receptor-interacting factor 1 | exportin-1chromosome region maintenance 1 homologchromosome region maintenance 1 protein homologexportin 1 (CRM1 homolog, yeast)exportin-1 (required for chromosome region maintenance) | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000444746, ENST00000453091, ENST00000428287, ENST00000243326, ENST00000430328, ENST00000433166, ENST00000457745, | ENST00000401558, ENST00000404992, ENST00000406957, ENST00000481214, | |
Fusion gene scores | * DoF score | 6 X 6 X 4=144 | 12 X 13 X 4=624 |
# samples | 6 | 17 | |
** MAII score | log2(6/144*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(17/624*10)=-1.87601128272455 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RIF1 [Title/Abstract] AND XPO1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RIF1(152285436)-XPO1(61709674), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | XPO1 | GO:0006611 | protein export from nucleus | 22250199 |
Fusion gene breakpoints across RIF1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across XPO1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-HU-A4GY-01A | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
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Fusion Gene ORF analysis for RIF1-XPO1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000444746 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000444746 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000444746 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
5CDS-intron | ENST00000444746 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000453091 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000453091 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000453091 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
5CDS-intron | ENST00000453091 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000428287 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000428287 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000428287 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
5CDS-intron | ENST00000428287 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000243326 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000243326 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000243326 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
5CDS-intron | ENST00000243326 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000430328 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000430328 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000430328 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
5CDS-intron | ENST00000430328 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000433166 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000433166 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
In-frame | ENST00000433166 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
5CDS-intron | ENST00000433166 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
intron-3CDS | ENST00000457745 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
intron-3CDS | ENST00000457745 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
intron-3CDS | ENST00000457745 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
intron-intron | ENST00000457745 | ENST00000481214 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000444746 | RIF1 | chr2 | 152285436 | + | ENST00000401558 | XPO1 | chr2 | 61709674 | - | 2461 | 1086 | 101 | 1489 | 462 |
ENST00000444746 | RIF1 | chr2 | 152285436 | + | ENST00000404992 | XPO1 | chr2 | 61709674 | - | 1972 | 1086 | 101 | 1489 | 462 |
ENST00000444746 | RIF1 | chr2 | 152285436 | + | ENST00000406957 | XPO1 | chr2 | 61709674 | - | 1610 | 1086 | 101 | 1489 | 462 |
ENST00000453091 | RIF1 | chr2 | 152285436 | + | ENST00000401558 | XPO1 | chr2 | 61709674 | - | 2461 | 1086 | 101 | 1489 | 462 |
ENST00000453091 | RIF1 | chr2 | 152285436 | + | ENST00000404992 | XPO1 | chr2 | 61709674 | - | 1972 | 1086 | 101 | 1489 | 462 |
ENST00000453091 | RIF1 | chr2 | 152285436 | + | ENST00000406957 | XPO1 | chr2 | 61709674 | - | 1610 | 1086 | 101 | 1489 | 462 |
ENST00000428287 | RIF1 | chr2 | 152285436 | + | ENST00000401558 | XPO1 | chr2 | 61709674 | - | 2364 | 989 | 4 | 1392 | 462 |
ENST00000428287 | RIF1 | chr2 | 152285436 | + | ENST00000404992 | XPO1 | chr2 | 61709674 | - | 1875 | 989 | 4 | 1392 | 462 |
ENST00000428287 | RIF1 | chr2 | 152285436 | + | ENST00000406957 | XPO1 | chr2 | 61709674 | - | 1513 | 989 | 4 | 1392 | 462 |
ENST00000243326 | RIF1 | chr2 | 152285436 | + | ENST00000401558 | XPO1 | chr2 | 61709674 | - | 2783 | 1408 | 408 | 1811 | 467 |
ENST00000243326 | RIF1 | chr2 | 152285436 | + | ENST00000404992 | XPO1 | chr2 | 61709674 | - | 2294 | 1408 | 408 | 1811 | 467 |
ENST00000243326 | RIF1 | chr2 | 152285436 | + | ENST00000406957 | XPO1 | chr2 | 61709674 | - | 1932 | 1408 | 408 | 1811 | 467 |
ENST00000430328 | RIF1 | chr2 | 152285436 | + | ENST00000401558 | XPO1 | chr2 | 61709674 | - | 2634 | 1259 | 259 | 1662 | 467 |
ENST00000430328 | RIF1 | chr2 | 152285436 | + | ENST00000404992 | XPO1 | chr2 | 61709674 | - | 2145 | 1259 | 259 | 1662 | 467 |
ENST00000430328 | RIF1 | chr2 | 152285436 | + | ENST00000406957 | XPO1 | chr2 | 61709674 | - | 1783 | 1259 | 259 | 1662 | 467 |
ENST00000433166 | RIF1 | chr2 | 152285436 | + | ENST00000401558 | XPO1 | chr2 | 61709674 | - | 2257 | 882 | 50 | 1285 | 411 |
ENST00000433166 | RIF1 | chr2 | 152285436 | + | ENST00000404992 | XPO1 | chr2 | 61709674 | - | 1768 | 882 | 50 | 1285 | 411 |
ENST00000433166 | RIF1 | chr2 | 152285436 | + | ENST00000406957 | XPO1 | chr2 | 61709674 | - | 1406 | 882 | 50 | 1285 | 411 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000444746 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.00031303 | 0.99968696 |
ENST00000444746 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000430266 | 0.9995697 |
ENST00000444746 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000648814 | 0.9993512 |
ENST00000453091 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.00031303 | 0.99968696 |
ENST00000453091 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000430266 | 0.9995697 |
ENST00000453091 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000648814 | 0.9993512 |
ENST00000428287 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000260688 | 0.99973935 |
ENST00000428287 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000379139 | 0.9996208 |
ENST00000428287 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000520039 | 0.99947995 |
ENST00000243326 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000340633 | 0.9996594 |
ENST00000243326 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000446234 | 0.99955374 |
ENST00000243326 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000649939 | 0.99935 |
ENST00000430328 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000285268 | 0.9997147 |
ENST00000430328 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000389755 | 0.99961025 |
ENST00000430328 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000522432 | 0.99947757 |
ENST00000433166 | ENST00000401558 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000188766 | 0.99981123 |
ENST00000433166 | ENST00000404992 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000295718 | 0.9997043 |
ENST00000433166 | ENST00000406957 | RIF1 | chr2 | 152285436 | + | XPO1 | chr2 | 61709674 | - | 0.000443068 | 0.99955696 |
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Fusion Genomic Features for RIF1-XPO1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RIF1-XPO1 |
Go to FGviewer for the breakpoints of chr2:152285436-chr2:61709674 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 1002_1039 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 10 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 1002_1039 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 10 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 1002_1039 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 10 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 46_112 | 937.3333333333334 | 1072.0 | Domain | Importin N-terminal | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 46_112 | 937.3333333333334 | 1072.0 | Domain | Importin N-terminal | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 46_112 | 937.3333333333334 | 1072.0 | Domain | Importin N-terminal | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 1_679 | 937.3333333333334 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 411_414 | 937.3333333333334 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 1_679 | 937.3333333333334 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 411_414 | 937.3333333333334 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 1_679 | 937.3333333333334 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 411_414 | 937.3333333333334 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 217_240 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 1 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 241_277 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 2 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 354_472 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 3 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 515_553 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 4 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 560_597 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 5 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 602_639 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 6 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 775_813 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 7 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 885_916 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 8 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 917_954 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 9 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 217_240 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 1 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 241_277 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 2 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 354_472 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 3 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 515_553 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 4 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 560_597 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 5 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 602_639 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 6 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 775_813 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 7 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 885_916 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 8 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 917_954 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 9 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 217_240 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 1 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 241_277 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 2 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 354_472 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 3 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 515_553 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 4 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 560_597 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 5 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 602_639 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 6 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 775_813 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 7 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 885_916 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 8 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 917_954 | 937.3333333333334 | 1072.0 | Repeat | Note=HEAT 9 |
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Fusion Gene Sequence for RIF1-XPO1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000444746_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2461nt_BP=1086nt CGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGC TCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCCTAGGGTGGCCGACATGACGGCCAGGGGTCAGA GCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTA TGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTC AAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATG CTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGA CATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTG TTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAAC TGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGA AACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGA CTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAAC TAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAA ATCCAGGTTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAA ATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGC TCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTG CAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTG TCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTA GCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTG TTTTTTTGTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAA AATTAAGGCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGT AATTCTAATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGA AGAAAAGATAATGAGTAAAACAAATTGCGTTGTTTAAAGGATTATAGTGCTGCATTGTCTGAAGTTAGCACCTCTTGGACTGAATCGTTT GTCTAGACTACATGTATTACAAAGTCTCTTTGGCAAGATTGCAGCAAGATCATGTGCATATCATCCCATTGTAAAGCGACTTCAAAAATA TGGGAACACAGTTAGTTATTTTTACACAGTTCTTTTTGTTTTTGTGTGTGTGTGCTGTCGCTTGTCGACAACAGCTTTTTGTTTTCCTCA ATGAGGAGTGTTGCTCATTTGTGAGCCTTCATTAACTCGAAGTGAAATGGTTAAAAATATTTATCCTGTTAGAATAGGCTGCATCTTTTT AACAACTCATTAAAAAACAAAACAACTCTGGCTTTTGAGATGACTTATACTAATTTACATTGTTTACCAAGCTGTAGTGCTTTAAGAACA CTACTTAAAAAGCAAAATAAACTTGGTTTACATTTATTTTTCCTTTATTGACTCATTTATTCCTATATTAATGATAGTGGGTATTTGTGT >In-frame_ENST00000444746_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=101_stop in transcript=1489 MGAEGQRRREPCPDLPRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000444746_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1972nt_BP=1086nt CGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGC TCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCCTAGGGTGGCCGACATGACGGCCAGGGGTCAGA GCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTA TGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTC AAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATG CTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGA CATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTG TTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAAC TGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGA AACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGA CTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAAC TAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAA ATCCAGGTTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAA ATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGC TCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTG CAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTG TCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTA GCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTG TTTTTTTGTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAA AATTAAGGCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGT AATTCTAATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGA >In-frame_ENST00000444746_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=101_stop in transcript=1489 MGAEGQRRREPCPDLPRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000444746_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1610nt_BP=1086nt CGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGC TCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCCTAGGGTGGCCGACATGACGGCCAGGGGTCAGA GCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTA TGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTC AAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATG CTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGA CATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTG TTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAAC TGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGA AACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGA CTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAAC TAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAA ATCCAGGTTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAA ATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGC TCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTG CAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTG TCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTA >In-frame_ENST00000444746_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=101_stop in transcript=1489 MGAEGQRRREPCPDLPRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000453091_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2461nt_BP=1086nt CGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGC TCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCCTAGGGTGGCCGACATGACGGCCAGGGGTCAGA GCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTA TGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTC AAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATG CTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGA CATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTG TTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAAC TGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGA AACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGA CTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAAC TAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAA ATCCAGGTTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAA ATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGC TCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTG CAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTG TCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTA GCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTG TTTTTTTGTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAA AATTAAGGCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGT AATTCTAATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGA AGAAAAGATAATGAGTAAAACAAATTGCGTTGTTTAAAGGATTATAGTGCTGCATTGTCTGAAGTTAGCACCTCTTGGACTGAATCGTTT GTCTAGACTACATGTATTACAAAGTCTCTTTGGCAAGATTGCAGCAAGATCATGTGCATATCATCCCATTGTAAAGCGACTTCAAAAATA TGGGAACACAGTTAGTTATTTTTACACAGTTCTTTTTGTTTTTGTGTGTGTGTGCTGTCGCTTGTCGACAACAGCTTTTTGTTTTCCTCA ATGAGGAGTGTTGCTCATTTGTGAGCCTTCATTAACTCGAAGTGAAATGGTTAAAAATATTTATCCTGTTAGAATAGGCTGCATCTTTTT AACAACTCATTAAAAAACAAAACAACTCTGGCTTTTGAGATGACTTATACTAATTTACATTGTTTACCAAGCTGTAGTGCTTTAAGAACA CTACTTAAAAAGCAAAATAAACTTGGTTTACATTTATTTTTCCTTTATTGACTCATTTATTCCTATATTAATGATAGTGGGTATTTGTGT >In-frame_ENST00000453091_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=101_stop in transcript=1489 MGAEGQRRREPCPDLPRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000453091_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1972nt_BP=1086nt CGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGC TCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCCTAGGGTGGCCGACATGACGGCCAGGGGTCAGA GCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTA TGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTC AAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATG CTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGA CATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTG TTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAAC TGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGA AACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGA CTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAAC TAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAA ATCCAGGTTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAA ATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGC TCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTG CAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTG TCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTA GCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTG TTTTTTTGTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAA AATTAAGGCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGT AATTCTAATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGA >In-frame_ENST00000453091_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=101_stop in transcript=1489 MGAEGQRRREPCPDLPRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000453091_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1610nt_BP=1086nt CGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGC TCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCCTAGGGTGGCCGACATGACGGCCAGGGGTCAGA GCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTA TGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTC AAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATG CTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGA CATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTG TTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAAC TGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGA AACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGA CTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAAC TAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAA ATCCAGGTTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAA ATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGC TCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTG CAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTG TCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTA >In-frame_ENST00000453091_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=101_stop in transcript=1489 MGAEGQRRREPCPDLPRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000428287_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2364nt_BP=989nt ACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCT CGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGG AGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTC GGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGA ATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCC CTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGA TTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCAT ACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCA AGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGT GTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGA ACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGG TTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGT TAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGT GACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGA AGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGG CATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGG AAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTT GTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAG GCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTA ATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAG ATAATGAGTAAAACAAATTGCGTTGTTTAAAGGATTATAGTGCTGCATTGTCTGAAGTTAGCACCTCTTGGACTGAATCGTTTGTCTAGA CTACATGTATTACAAAGTCTCTTTGGCAAGATTGCAGCAAGATCATGTGCATATCATCCCATTGTAAAGCGACTTCAAAAATATGGGAAC ACAGTTAGTTATTTTTACACAGTTCTTTTTGTTTTTGTGTGTGTGTGCTGTCGCTTGTCGACAACAGCTTTTTGTTTTCCTCAATGAGGA GTGTTGCTCATTTGTGAGCCTTCATTAACTCGAAGTGAAATGGTTAAAAATATTTATCCTGTTAGAATAGGCTGCATCTTTTTAACAACT CATTAAAAAACAAAACAACTCTGGCTTTTGAGATGACTTATACTAATTTACATTGTTTACCAAGCTGTAGTGCTTTAAGAACACTACTTA AAAAGCAAAATAAACTTGGTTTACATTTATTTTTCCTTTATTGACTCATTTATTCCTATATTAATGATAGTGGGTATTTGTGTTTAAGCA >In-frame_ENST00000428287_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=4_stop in transcript=1392 MGPPSRHLGLGGSAPHAVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000428287_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1875nt_BP=989nt ACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCT CGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGG AGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTC GGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGA ATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCC CTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGA TTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCAT ACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCA AGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGT GTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGA ACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGG TTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGT TAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGT GACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGA AGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGG CATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGG AAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTT GTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAG GCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTA ATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAG >In-frame_ENST00000428287_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=4_stop in transcript=1392 MGPPSRHLGLGGSAPHAVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000428287_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1513nt_BP=989nt ACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCT CGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGG AGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTC GGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGA ATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCC CTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGA TTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCAT ACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCA AGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGT GTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGA ACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGG TTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGT TAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGT GACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGA AGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGG CATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGG >In-frame_ENST00000428287_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=462AA_start in transcript=4_stop in transcript=1392 MGPPSRHLGLGGSAPHAVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSE LSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDF EALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKNETYVL KLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVN NQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGI -------------------------------------------------------------- >In-frame_ENST00000243326_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2783nt_BP=1408nt TGAGTAAACAGCCGGAGCTGGGAAAGTCGAGCTCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCC TAGGTGGGATAAATATCGGGGTGACAGTGGTAGGCCGCGGGGAACCCTCAGTCTGCCCACCCTCCGCCCCCTCGCGGCGAGATGCCTCGT TCCCCGGGCTTCTCCCGCCCTCCGCCGATCTCCTCCCTCTGTTGAAAGCTGCCCGGGAAAGTGGTGGCGGGAGCGGGCCCAGGCCCGAAT GTGGCGTGGGCTCAGGTGTCTGGTGTCGGGCGCCGGAGGAGGTTCGCGCTGGGGTTTGGTGATTCGGAGGCCTGGGGTGCAGACGCGGCG TGGCTGTGAGGCCCGGGCGGGCGTGCGGGTGTGAGGGCCGGACTCACACTGGGCCGCCGCGGGGCTGTTTCCATCGGTCACTGGATTTTC TCCTCTTCCGGTTCGGGCCTCAGGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCT TCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATT GAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTG GGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAG AATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGT ATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTA ATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTA CATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATG ACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTA CTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATT AAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGGTTTAACAATGCATGCATCAATTCTTGCATAT ATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTG GCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATT CCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGA GAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAA ATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAA TGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTTGTATAAGAAATTTTCTGTGAAATATCCTTCC ATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAGGCATTTTTAAAAATTTTACTTCATGCCCATT TTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTAATGCAAAATTATACAATTTTTCCTGTAAACA ATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAGATAATGAGTAAAACAAATTGCGTTGTTTAAA GGATTATAGTGCTGCATTGTCTGAAGTTAGCACCTCTTGGACTGAATCGTTTGTCTAGACTACATGTATTACAAAGTCTCTTTGGCAAGA TTGCAGCAAGATCATGTGCATATCATCCCATTGTAAAGCGACTTCAAAAATATGGGAACACAGTTAGTTATTTTTACACAGTTCTTTTTG TTTTTGTGTGTGTGTGCTGTCGCTTGTCGACAACAGCTTTTTGTTTTCCTCAATGAGGAGTGTTGCTCATTTGTGAGCCTTCATTAACTC GAAGTGAAATGGTTAAAAATATTTATCCTGTTAGAATAGGCTGCATCTTTTTAACAACTCATTAAAAAACAAAACAACTCTGGCTTTTGA GATGACTTATACTAATTTACATTGTTTACCAAGCTGTAGTGCTTTAAGAACACTACTTAAAAAGCAAAATAAACTTGGTTTACATTTATT >In-frame_ENST00000243326_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=467AA_start in transcript=408_stop in transcript=1811 MGRRGAVSIGHWIFSSSGSGLRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHIS SQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHS AVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKN ETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNP GNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM -------------------------------------------------------------- >In-frame_ENST00000243326_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2294nt_BP=1408nt TGAGTAAACAGCCGGAGCTGGGAAAGTCGAGCTCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCC TAGGTGGGATAAATATCGGGGTGACAGTGGTAGGCCGCGGGGAACCCTCAGTCTGCCCACCCTCCGCCCCCTCGCGGCGAGATGCCTCGT TCCCCGGGCTTCTCCCGCCCTCCGCCGATCTCCTCCCTCTGTTGAAAGCTGCCCGGGAAAGTGGTGGCGGGAGCGGGCCCAGGCCCGAAT GTGGCGTGGGCTCAGGTGTCTGGTGTCGGGCGCCGGAGGAGGTTCGCGCTGGGGTTTGGTGATTCGGAGGCCTGGGGTGCAGACGCGGCG TGGCTGTGAGGCCCGGGCGGGCGTGCGGGTGTGAGGGCCGGACTCACACTGGGCCGCCGCGGGGCTGTTTCCATCGGTCACTGGATTTTC TCCTCTTCCGGTTCGGGCCTCAGGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCT TCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATT GAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTG GGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAG AATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGT ATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTA ATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTA CATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATG ACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTA CTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATT AAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGGTTTAACAATGCATGCATCAATTCTTGCATAT ATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTG GCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATT CCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGA GAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAA ATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAA TGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTTGTATAAGAAATTTTCTGTGAAATATCCTTCC ATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAGGCATTTTTAAAAATTTTACTTCATGCCCATT TTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTAATGCAAAATTATACAATTTTTCCTGTAAACA ATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAGATAATGAGTAAAACAAATTGCGTTGTTTAAA >In-frame_ENST00000243326_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=467AA_start in transcript=408_stop in transcript=1811 MGRRGAVSIGHWIFSSSGSGLRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHIS SQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHS AVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKN ETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNP GNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM -------------------------------------------------------------- >In-frame_ENST00000243326_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1932nt_BP=1408nt TGAGTAAACAGCCGGAGCTGGGAAAGTCGAGCTCTGGCAGCGTCTGGGTGCTGAGGGGCAGAGGCGGAGAGAACCCTGTCCTGATCTTCC TAGGTGGGATAAATATCGGGGTGACAGTGGTAGGCCGCGGGGAACCCTCAGTCTGCCCACCCTCCGCCCCCTCGCGGCGAGATGCCTCGT TCCCCGGGCTTCTCCCGCCCTCCGCCGATCTCCTCCCTCTGTTGAAAGCTGCCCGGGAAAGTGGTGGCGGGAGCGGGCCCAGGCCCGAAT GTGGCGTGGGCTCAGGTGTCTGGTGTCGGGCGCCGGAGGAGGTTCGCGCTGGGGTTTGGTGATTCGGAGGCCTGGGGTGCAGACGCGGCG TGGCTGTGAGGCCCGGGCGGGCGTGCGGGTGTGAGGGCCGGACTCACACTGGGCCGCCGCGGGGCTGTTTCCATCGGTCACTGGATTTTC TCCTCTTCCGGTTCGGGCCTCAGGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCT TCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATT GAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTG GGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGAATTGCTTTCAAAATTGAATGATACCATTAAG AATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCCCTCTGAAGTGGTTGGCAAAATGGTATCCAGT ATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGATTTTGAAGCATTAAATGTTATCGTAAGGCTA ATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTA CATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATG ACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTA CTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGAACTTGGATTTCGTAGTGGAGCACCCATGATT AAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGGTTTAACAATGCATGCATCAATTCTTGCATAT ATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCAAATCTTTCTTCAGGAATATGTG GCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCTTAAATCAAGATATT CCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGAAGACACTTCTGATTTGTTTTTGGAAGAGAGA GAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGGCATCTTTAATCCACATGAGATTCCAGAAGAA ATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGGAAAACAGCATGTGGGTATTTGTCGACCAAAA >In-frame_ENST00000243326_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=467AA_start in transcript=408_stop in transcript=1811 MGRRGAVSIGHWIFSSSGSGLRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHIS SQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHS AVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKN ETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNP GNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM -------------------------------------------------------------- >In-frame_ENST00000430328_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2634nt_BP=1259nt CCCTCCGCCCCCTCGCGGCGAGATGCCTCGTTCCCCGGGCTTCTCCCGCCCTCCGCCGATCTCCTCCCTCTGTTGAAAGCTGCCCGGGAA AGTGGTGGCGGGAGCGGGCCCAGGCCCGAATGTGGCGTGGGCTCAGGTGTCTGGTGTCGGGCGCCGGAGGAGGTTCGCGCTGGGGTTTGG TGATTCGGAGGCCTGGGGTGCAGACGCGGCGTGGCTGTGAGGCCCGGGCGGGCGTGCGGGTGTGAGGGCCGGACTCACACTGGGCCGCCG CGGGGCTGTTTCCATCGGTCACTGGATTTTCTCCTCTTCCGGTTCGGGCCTCAGGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCT CGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGG AGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTC GGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGA ATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCC CTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGA TTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCAT ACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCA AGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGT GTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGA ACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGG TTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGT TAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGT GACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGA AGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGG CATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGG AAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTT GTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAG GCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTA ATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAG ATAATGAGTAAAACAAATTGCGTTGTTTAAAGGATTATAGTGCTGCATTGTCTGAAGTTAGCACCTCTTGGACTGAATCGTTTGTCTAGA CTACATGTATTACAAAGTCTCTTTGGCAAGATTGCAGCAAGATCATGTGCATATCATCCCATTGTAAAGCGACTTCAAAAATATGGGAAC ACAGTTAGTTATTTTTACACAGTTCTTTTTGTTTTTGTGTGTGTGTGCTGTCGCTTGTCGACAACAGCTTTTTGTTTTCCTCAATGAGGA GTGTTGCTCATTTGTGAGCCTTCATTAACTCGAAGTGAAATGGTTAAAAATATTTATCCTGTTAGAATAGGCTGCATCTTTTTAACAACT CATTAAAAAACAAAACAACTCTGGCTTTTGAGATGACTTATACTAATTTACATTGTTTACCAAGCTGTAGTGCTTTAAGAACACTACTTA AAAAGCAAAATAAACTTGGTTTACATTTATTTTTCCTTTATTGACTCATTTATTCCTATATTAATGATAGTGGGTATTTGTGTTTAAGCA >In-frame_ENST00000430328_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=467AA_start in transcript=259_stop in transcript=1662 MGRRGAVSIGHWIFSSSGSGLRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHIS SQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHS AVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKN ETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNP GNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM -------------------------------------------------------------- >In-frame_ENST00000430328_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2145nt_BP=1259nt CCCTCCGCCCCCTCGCGGCGAGATGCCTCGTTCCCCGGGCTTCTCCCGCCCTCCGCCGATCTCCTCCCTCTGTTGAAAGCTGCCCGGGAA AGTGGTGGCGGGAGCGGGCCCAGGCCCGAATGTGGCGTGGGCTCAGGTGTCTGGTGTCGGGCGCCGGAGGAGGTTCGCGCTGGGGTTTGG TGATTCGGAGGCCTGGGGTGCAGACGCGGCGTGGCTGTGAGGCCCGGGCGGGCGTGCGGGTGTGAGGGCCGGACTCACACTGGGCCGCCG CGGGGCTGTTTCCATCGGTCACTGGATTTTCTCCTCTTCCGGTTCGGGCCTCAGGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCT CGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGG AGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTC GGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGA ATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCC CTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGA TTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCAT ACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCA AGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGT GTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGA ACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGG TTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGT TAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGT GACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGA AGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGG CATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGG AAAACAGCATGTGGGTATTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTT GTATAAGAAATTTTCTGTGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAG GCATTTTTAAAAATTTTACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTA ATGCAAAATTATACAATTTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAG >In-frame_ENST00000430328_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=467AA_start in transcript=259_stop in transcript=1662 MGRRGAVSIGHWIFSSSGSGLRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHIS SQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHS AVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKN ETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNP GNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM -------------------------------------------------------------- >In-frame_ENST00000430328_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1783nt_BP=1259nt CCCTCCGCCCCCTCGCGGCGAGATGCCTCGTTCCCCGGGCTTCTCCCGCCCTCCGCCGATCTCCTCCCTCTGTTGAAAGCTGCCCGGGAA AGTGGTGGCGGGAGCGGGCCCAGGCCCGAATGTGGCGTGGGCTCAGGTGTCTGGTGTCGGGCGCCGGAGGAGGTTCGCGCTGGGGTTTGG TGATTCGGAGGCCTGGGGTGCAGACGCGGCGTGGCTGTGAGGCCCGGGCGGGCGTGCGGGTGTGAGGGCCGGACTCACACTGGGCCGCCG CGGGGCTGTTTCCATCGGTCACTGGATTTTCTCCTCTTCCGGTTCGGGCCTCAGGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCT CGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGG AGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTC GGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGA ATTGCTTTCAAAATTGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCC CTCTGAAGTGGTTGGCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGA TTTTGAAGCATTAAATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCAT ACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCA AGAAATAGCATCTATTACGGAGCAGCTTATGACTACTAAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGT GTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGGACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGA ACTTGGATTTCGTAGTGGAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGG TTTAACAATGCATGCATCAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGT TAACAACCAAATCTTTCTTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGT GACAGGGCTTTTCAGCTTAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGA AGACACTTCTGATTTGTTTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGG CATCTTTAATCCACATGAGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGG >In-frame_ENST00000430328_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=467AA_start in transcript=259_stop in transcript=1662 MGRRGAVSIGHWIFSSSGSGLRVADMTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHIS SQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHS AVVDFEALNVIVRLIEQAPIQMGEEAVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKLFMSKN ETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLIDNFALNPGLTMHASILAYMFNLVEEGKISTSLNP GNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQM -------------------------------------------------------------- >In-frame_ENST00000433166_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=2257nt_BP=882nt CCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGG AGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGGAGAAGAAGGAAAAG AAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTG CTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGAATTGCTTTCAAAAT TGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCCCTCTGAAGTGGTTG GCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGATTTTGAAGCATTAA ATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTC ATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTA TTACGGAGCAGCTTATGACTACTACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGAACTTGGATTTCGTAGTG GAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGGTTTAACAATGCATGCAT CAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCAAATCTTTC TTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCT TAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGAAGACACTTCTGATTTGT TTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGGCATCTTTAATCCACATG AGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGGAAAACAGCATGTGGGTA TTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTTGTATAAGAAATTTTCTG TGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAGGCATTTTTAAAAATTTT ACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTAATGCAAAATTATACAAT TTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAGATAATGAGTAAAACAAA TTGCGTTGTTTAAAGGATTATAGTGCTGCATTGTCTGAAGTTAGCACCTCTTGGACTGAATCGTTTGTCTAGACTACATGTATTACAAAG TCTCTTTGGCAAGATTGCAGCAAGATCATGTGCATATCATCCCATTGTAAAGCGACTTCAAAAATATGGGAACACAGTTAGTTATTTTTA CACAGTTCTTTTTGTTTTTGTGTGTGTGTGCTGTCGCTTGTCGACAACAGCTTTTTGTTTTCCTCAATGAGGAGTGTTGCTCATTTGTGA GCCTTCATTAACTCGAAGTGAAATGGTTAAAAATATTTATCCTGTTAGAATAGGCTGCATCTTTTTAACAACTCATTAAAAAACAAAACA ACTCTGGCTTTTGAGATGACTTATACTAATTTACATTGTTTACCAAGCTGTAGTGCTTTAAGAACACTACTTAAAAAGCAAAATAAACTT GGTTTACATTTATTTTTCCTTTATTGACTCATTTATTCCTATATTAATGATAGTGGGTATTTGTGTTTAAGCATCAAGTAACATTTTAAA >In-frame_ENST00000433166_ENST00000401558_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=411AA_start in transcript=50_stop in transcript=1285 MTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSELSSAALQALGFCLYNPKITS ELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEE AVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLI DNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLV -------------------------------------------------------------- >In-frame_ENST00000433166_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1768nt_BP=882nt CCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGG AGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGGAGAAGAAGGAAAAG AAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTG CTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGAATTGCTTTCAAAAT TGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCCCTCTGAAGTGGTTG GCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGATTTTGAAGCATTAA ATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTC ATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTA TTACGGAGCAGCTTATGACTACTACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGAACTTGGATTTCGTAGTG GAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGGTTTAACAATGCATGCAT CAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCAAATCTTTC TTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCT TAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGAAGACACTTCTGATTTGT TTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGGCATCTTTAATCCACATG AGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGGAAAACAGCATGTGGGTA TTTGTCGACCAAAATGATGCCAATTTGTAAATTAAAATGTCACCTAGTGGCCCTTTTTCTTATGTGTTTTTTTGTATAAGAAATTTTCTG TGAAATATCCTTCCATTGTTTAAGCTTTTGTTTTGGTCATCTTTATTTAGTTTGCATGAAGTTGAAAATTAAGGCATTTTTAAAAATTTT ACTTCATGCCCATTTTTGTGGCTGGGCTGGGGGGAGGAGGCAAATTCGATTTGAACATATACTTGTAATTCTAATGCAAAATTATACAAT TTTTCCTGTAAACAATACCAATTTTTAATTAGGGAGCATTTTCCTTCTAGTCTATTTCAGCCTAGAAGAAAAGATAATGAGTAAAACAAA >In-frame_ENST00000433166_ENST00000404992_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=411AA_start in transcript=50_stop in transcript=1285 MTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSELSSAALQALGFCLYNPKITS ELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEE AVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLI DNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLV -------------------------------------------------------------- >In-frame_ENST00000433166_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(transcript)=1406nt_BP=882nt CCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGG AGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAGTCGTATGACTGGAGAAGAAGGAAAAG AAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAGACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTG CTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAGAGGCAAATGCTCTAGAATTGCTTTCAAAAT TGAATGATACCATTAAGAATTCAGACAAAAATGTACGTACTAGAGCACTTTGGGTGATATCTAAGCAGACATTTCCCTCTGAAGTGGTTG GCAAAATGGTATCCAGTATAATTGATTCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGCTGTTGTTGATTTTGAAGCATTAA ATGTTATCGTAAGGCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTC ATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTA TTACGGAGCAGCTTATGACTACTACCTTGCATCGAAGTGGGAGTTTCATCAATTCTCTCTTGCAACTAGAAGAACTTGGATTTCGTAGTG GAGCACCCATGATTAAAAAGATAGCTTTTATTGCTTGGAAGAGTTTAATAGATAATTTTGCTTTAAATCCAGGTTTAACAATGCATGCAT CAATTCTTGCATATATGTTTAATTTGGTTGAAGAAGGAAAAATAAGTACATCATTAAATCCTGGAAATCCAGTTAACAACCAAATCTTTC TTCAGGAATATGTGGCTAATCTCCTTAAGTCGGCCTTCCCTCACCTACAAGATGCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCT TAAATCAAGATATTCCTGCTTTCAAGGAACATTTAAGAGATTTCCTAGTTCAAATAAAGGAATTTGCAGGTGAAGACACTTCTGATTTGT TTTTGGAAGAGAGAGAAATAGCCCTACGGCAGGCTGATGAAGAGAAACATAAACGTCAAATGTCTGTCCCTGGCATCTTTAATCCACATG AGATTCCAGAAGAAATGTGTGATTAAAATCCAAATTCATGCTGTTTTTTTTCTCTGCAACTCGTTAGCAGAGGAAAACAGCATGTGGGTA >In-frame_ENST00000433166_ENST00000406957_TCGA-HU-A4GY-01A_RIF1_chr2_152285436_+_XPO1_chr2_61709674_length(amino acids)=411AA_start in transcript=50_stop in transcript=1285 MTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVLKTHISSQNSELSSAALQALGFCLYNPKITS ELSEANALELLSKLNDTIKNSDKNVRTRALWVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEE AVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSLI DNFALNPGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RIF1-XPO1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000243326 | + | 8 | 35 | 1924_2472 | 308.3333333333333 | 2473.0 | condensed chromosomes in telophase |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000428287 | + | 9 | 35 | 1924_2472 | 308.3333333333333 | 2447.0 | condensed chromosomes in telophase |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000430328 | + | 8 | 34 | 1924_2472 | 308.3333333333333 | 2447.0 | condensed chromosomes in telophase |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000444746 | + | 9 | 36 | 1924_2472 | 308.3333333333333 | 2473.0 | condensed chromosomes in telophase |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000453091 | + | 9 | 35 | 1924_2472 | 308.3333333333333 | 2447.0 | condensed chromosomes in telophase |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000243326 | + | 8 | 35 | 2170_2446 | 308.3333333333333 | 2473.0 | ERCC6 |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000428287 | + | 9 | 35 | 2170_2446 | 308.3333333333333 | 2447.0 | ERCC6 |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000430328 | + | 8 | 34 | 2170_2446 | 308.3333333333333 | 2447.0 | ERCC6 |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000444746 | + | 9 | 36 | 2170_2446 | 308.3333333333333 | 2473.0 | ERCC6 |
Hgene | RIF1 | chr2:152285436 | chr2:61709674 | ENST00000453091 | + | 9 | 35 | 2170_2446 | 308.3333333333333 | 2447.0 | ERCC6 |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 800_820 | 937.3333333333334 | 1072.0 | HIV-1 Rev | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 800_820 | 937.3333333333334 | 1072.0 | HIV-1 Rev | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 800_820 | 937.3333333333334 | 1072.0 | HIV-1 Rev | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 327_450 | 937.3333333333334 | 1072.0 | Ran and nuclear export complex formation | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 327_450 | 937.3333333333334 | 1072.0 | Ran and nuclear export complex formation | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 327_450 | 937.3333333333334 | 1072.0 | Ran and nuclear export complex formation | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000401558 | 21 | 25 | 411_481 | 937.3333333333334 | 1072.0 | RANBP3 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000404992 | 21 | 25 | 411_481 | 937.3333333333334 | 1072.0 | RANBP3 | |
Tgene | XPO1 | chr2:152285436 | chr2:61709674 | ENST00000406957 | 22 | 26 | 411_481 | 937.3333333333334 | 1072.0 | RANBP3 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RIF1-XPO1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RIF1-XPO1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | XPO1 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
Tgene | XPO1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Tgene | XPO1 | C0235480 | Paroxysmal atrial fibrillation | 1 | CTD_human |
Tgene | XPO1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
Tgene | XPO1 | C1292754 | Mediastinal (Thymic) Large B-Cell Lymphoma | 1 | ORPHANET |
Tgene | XPO1 | C2585653 | Persistent atrial fibrillation | 1 | CTD_human |
Tgene | XPO1 | C3468561 | familial atrial fibrillation | 1 | CTD_human |