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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ATAD1-PAPSS2 (FusionGDB2 ID:7419) |
Fusion Gene Summary for ATAD1-PAPSS2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ATAD1-PAPSS2 | Fusion gene ID: 7419 | Hgene | Tgene | Gene symbol | ATAD1 | PAPSS2 | Gene ID | 84896 | 9060 |
Gene name | ATPase family AAA domain containing 1 | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | |
Synonyms | AFDC1|FNP001|HKPX4|Msp1|THORASE | ATPSK2|BCYM4|SK2 | |
Cytomap | 10q23.31 | 10q23.2-q23.31 | |
Type of gene | protein-coding | protein-coding | |
Description | ATPase family AAA domain-containing protein 1 | bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 23-prime-phosphoadenosine 5-prime-phosphosulfate synthase 2ATP sulfurylase/APS kinase 2ATP sulfurylase/adenosine 5'-phosphosulfate kinasePAPS synthase 2PAPS synthetase 2SK 2adenosine 5'-ph | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q8NBU5 | . | |
Ensembl transtripts involved in fusion gene | ENST00000308448, ENST00000328142, ENST00000400215, ENST00000541004, ENST00000495903, | ENST00000361175, ENST00000456849, ENST00000427144, ENST00000482258, | |
Fusion gene scores | * DoF score | 11 X 8 X 7=616 | 4 X 5 X 4=80 |
# samples | 12 | 4 | |
** MAII score | log2(12/616*10)=-2.35989594508638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/80*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ATAD1 [Title/Abstract] AND PAPSS2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PAPSS2(89475600)-ATAD1(89574369), # samples:4 ATAD1(89574195)-PAPSS2(89468953), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | ATAD1-PAPSS2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. ATAD1-PAPSS2 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across ATAD1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across PAPSS2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LGG | TCGA-FG-A70Z | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
ChimerDB4 | LGG | TCGA-FG-A70Z | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
ChimerDB4 | LGG | TCGA-FG-A70Z-01A | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
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Fusion Gene ORF analysis for ATAD1-PAPSS2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000308448 | ENST00000361175 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
Frame-shift | ENST00000308448 | ENST00000456849 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
Frame-shift | ENST00000308448 | ENST00000427144 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5CDS-3UTR | ENST00000308448 | ENST00000482258 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
In-frame | ENST00000328142 | ENST00000361175 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
In-frame | ENST00000328142 | ENST00000456849 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
In-frame | ENST00000328142 | ENST00000427144 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5CDS-3UTR | ENST00000328142 | ENST00000482258 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
intron-3CDS | ENST00000400215 | ENST00000361175 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
intron-3CDS | ENST00000400215 | ENST00000456849 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
intron-3CDS | ENST00000400215 | ENST00000427144 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
intron-3UTR | ENST00000400215 | ENST00000482258 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
Frame-shift | ENST00000541004 | ENST00000361175 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
Frame-shift | ENST00000541004 | ENST00000456849 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
Frame-shift | ENST00000541004 | ENST00000427144 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5CDS-3UTR | ENST00000541004 | ENST00000482258 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5UTR-3CDS | ENST00000495903 | ENST00000361175 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5UTR-3CDS | ENST00000495903 | ENST00000456849 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5UTR-3CDS | ENST00000495903 | ENST00000427144 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
5UTR-3UTR | ENST00000495903 | ENST00000482258 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + |
Frame-shift | ENST00000308448 | ENST00000361175 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
Frame-shift | ENST00000308448 | ENST00000456849 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
Frame-shift | ENST00000308448 | ENST00000427144 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5CDS-3UTR | ENST00000308448 | ENST00000482258 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
In-frame | ENST00000328142 | ENST00000361175 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
In-frame | ENST00000328142 | ENST00000456849 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
In-frame | ENST00000328142 | ENST00000427144 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5CDS-3UTR | ENST00000328142 | ENST00000482258 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
intron-3CDS | ENST00000400215 | ENST00000361175 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
intron-3CDS | ENST00000400215 | ENST00000456849 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
intron-3CDS | ENST00000400215 | ENST00000427144 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
intron-3UTR | ENST00000400215 | ENST00000482258 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
Frame-shift | ENST00000541004 | ENST00000361175 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
Frame-shift | ENST00000541004 | ENST00000456849 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
Frame-shift | ENST00000541004 | ENST00000427144 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5CDS-3UTR | ENST00000541004 | ENST00000482258 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5UTR-3CDS | ENST00000495903 | ENST00000361175 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5UTR-3CDS | ENST00000495903 | ENST00000456849 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5UTR-3CDS | ENST00000495903 | ENST00000427144 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
5UTR-3UTR | ENST00000495903 | ENST00000482258 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000328142 | ATAD1 | chr10 | 89574194 | - | ENST00000361175 | PAPSS2 | chr10 | 89468952 | + | 3998 | 445 | 253 | 2262 | 669 |
ENST00000328142 | ATAD1 | chr10 | 89574194 | - | ENST00000456849 | PAPSS2 | chr10 | 89468952 | + | 4011 | 445 | 253 | 2277 | 674 |
ENST00000328142 | ATAD1 | chr10 | 89574194 | - | ENST00000427144 | PAPSS2 | chr10 | 89468952 | + | 2326 | 445 | 253 | 2262 | 669 |
ENST00000328142 | ATAD1 | chr10 | 89574195 | - | ENST00000361175 | PAPSS2 | chr10 | 89468953 | + | 3998 | 445 | 253 | 2262 | 669 |
ENST00000328142 | ATAD1 | chr10 | 89574195 | - | ENST00000456849 | PAPSS2 | chr10 | 89468953 | + | 4011 | 445 | 253 | 2277 | 674 |
ENST00000328142 | ATAD1 | chr10 | 89574195 | - | ENST00000427144 | PAPSS2 | chr10 | 89468953 | + | 2326 | 445 | 253 | 2262 | 669 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000328142 | ENST00000361175 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 0.000287523 | 0.9997124 |
ENST00000328142 | ENST00000456849 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 0.00018162 | 0.9998184 |
ENST00000328142 | ENST00000427144 | ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 0.000825022 | 0.999175 |
ENST00000328142 | ENST00000361175 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + | 0.000287523 | 0.9997124 |
ENST00000328142 | ENST00000456849 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + | 0.00018162 | 0.9998184 |
ENST00000328142 | ENST00000427144 | ATAD1 | chr10 | 89574195 | - | PAPSS2 | chr10 | 89468953 | + | 0.000825022 | 0.999175 |
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Fusion Genomic Features for ATAD1-PAPSS2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 1.75E-09 | 1 |
ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 1.75E-09 | 1 |
ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 1.75E-09 | 1 |
ATAD1 | chr10 | 89574194 | - | PAPSS2 | chr10 | 89468952 | + | 1.75E-09 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ATAD1-PAPSS2 |
Go to FGviewer for the breakpoints of chr10:89574194-chr10:89468952 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ATAD1 | . |
FUNCTION: Outer mitochondrial translocase required to remove mislocalized tail-anchored transmembrane proteins on mitochondria (PubMed:24843043). Specifically recognizes and binds tail-anchored transmembrane proteins: acts as a dislocase that mediates the ATP-dependent extraction of mistargeted tail-anchored transmembrane proteins from the mitochondrion outer membrane (By similarity). Also plays a critical role in regulating the surface expression of AMPA receptors (AMPAR), thereby regulating synaptic plasticity and learning and memory (By similarity). Required for NMDA-stimulated AMPAR internalization and inhibition of GRIA1 and GRIA2 recycling back to the plasma membrane; these activities are ATPase-dependent (By similarity). {ECO:0000250|UniProtKB:P28737, ECO:0000250|UniProtKB:Q9D5T0, ECO:0000269|PubMed:24843043}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000308448 | - | 2 | 10 | 1_15 | 54.0 | 362.0 | Topological domain | Mitochondrial intermembrane |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000328142 | - | 1 | 9 | 1_15 | 54.0 | 362.0 | Topological domain | Mitochondrial intermembrane |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000541004 | - | 2 | 9 | 1_15 | 54.0 | 288.0 | Topological domain | Mitochondrial intermembrane |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000308448 | - | 2 | 10 | 1_15 | 54.0 | 362.0 | Topological domain | Mitochondrial intermembrane |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000328142 | - | 1 | 9 | 1_15 | 54.0 | 362.0 | Topological domain | Mitochondrial intermembrane |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000541004 | - | 2 | 9 | 1_15 | 54.0 | 288.0 | Topological domain | Mitochondrial intermembrane |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000308448 | - | 2 | 10 | 16_32 | 54.0 | 362.0 | Transmembrane | Helical |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000328142 | - | 1 | 9 | 16_32 | 54.0 | 362.0 | Transmembrane | Helical |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000541004 | - | 2 | 9 | 16_32 | 54.0 | 288.0 | Transmembrane | Helical |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000308448 | - | 2 | 10 | 16_32 | 54.0 | 362.0 | Transmembrane | Helical |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000328142 | - | 1 | 9 | 16_32 | 54.0 | 362.0 | Transmembrane | Helical |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000541004 | - | 2 | 9 | 16_32 | 54.0 | 288.0 | Transmembrane | Helical |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 409_412 | 9.0 | 615.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 511_515 | 9.0 | 615.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 52_57 | 9.0 | 615.0 | Nucleotide binding | ATP 1 | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 409_412 | 9.0 | 620.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 511_515 | 9.0 | 620.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 52_57 | 9.0 | 620.0 | Nucleotide binding | ATP 1 | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 409_412 | 9.0 | 615.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 511_515 | 9.0 | 615.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 52_57 | 9.0 | 615.0 | Nucleotide binding | ATP 1 | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 409_412 | 9.0 | 620.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 511_515 | 9.0 | 620.0 | Nucleotide binding | ATP 2 | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 52_57 | 9.0 | 620.0 | Nucleotide binding | ATP 1 | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 122_123 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 174_175 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 224_614 | 9.0 | 615.0 | Region | Sulfate adenylyltransferase | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 79_82 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 96_99 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 122_123 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 174_175 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 224_614 | 9.0 | 620.0 | Region | Sulfate adenylyltransferase | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 79_82 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 96_99 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 122_123 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 174_175 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 224_614 | 9.0 | 615.0 | Region | Sulfate adenylyltransferase | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 79_82 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 96_99 | 9.0 | 615.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 122_123 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 174_175 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 224_614 | 9.0 | 620.0 | Region | Sulfate adenylyltransferase | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 79_82 | 9.0 | 620.0 | Region | Adenylyl sulfate binding | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 96_99 | 9.0 | 620.0 | Region | Adenylyl sulfate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000308448 | - | 2 | 10 | 133_140 | 54.0 | 362.0 | Nucleotide binding | ATP |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000328142 | - | 1 | 9 | 133_140 | 54.0 | 362.0 | Nucleotide binding | ATP |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000541004 | - | 2 | 9 | 133_140 | 54.0 | 288.0 | Nucleotide binding | ATP |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000308448 | - | 2 | 10 | 133_140 | 54.0 | 362.0 | Nucleotide binding | ATP |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000328142 | - | 1 | 9 | 133_140 | 54.0 | 362.0 | Nucleotide binding | ATP |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000541004 | - | 2 | 9 | 133_140 | 54.0 | 288.0 | Nucleotide binding | ATP |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000308448 | - | 2 | 10 | 33_361 | 54.0 | 362.0 | Topological domain | Cytoplasmic |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000328142 | - | 1 | 9 | 33_361 | 54.0 | 362.0 | Topological domain | Cytoplasmic |
Hgene | ATAD1 | chr10:89574194 | chr10:89468952 | ENST00000541004 | - | 2 | 9 | 33_361 | 54.0 | 288.0 | Topological domain | Cytoplasmic |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000308448 | - | 2 | 10 | 33_361 | 54.0 | 362.0 | Topological domain | Cytoplasmic |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000328142 | - | 1 | 9 | 33_361 | 54.0 | 362.0 | Topological domain | Cytoplasmic |
Hgene | ATAD1 | chr10:89574195 | chr10:89468953 | ENST00000541004 | - | 2 | 9 | 33_361 | 54.0 | 288.0 | Topological domain | Cytoplasmic |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000361175 | 0 | 12 | 1_215 | 9.0 | 615.0 | Region | Adenylyl-sulfate kinase | |
Tgene | PAPSS2 | chr10:89574194 | chr10:89468952 | ENST00000456849 | 0 | 13 | 1_215 | 9.0 | 620.0 | Region | Adenylyl-sulfate kinase | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000361175 | 0 | 12 | 1_215 | 9.0 | 615.0 | Region | Adenylyl-sulfate kinase | |
Tgene | PAPSS2 | chr10:89574195 | chr10:89468953 | ENST00000456849 | 0 | 13 | 1_215 | 9.0 | 620.0 | Region | Adenylyl-sulfate kinase |
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Fusion Gene Sequence for ATAD1-PAPSS2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000328142_ENST00000361175_TCGA-FG-A70Z_ATAD1_chr10_89574194_-_PAPSS2_chr10_89468952_length(transcript)=3998nt_BP=445nt GTATTTTTCAAATAAAATGATTAATTCTACTACCAAATAAATCTTAATTTCTAGTCTACTTCTAGTTTGCAAGAGGAGCTTTAAATGTAT TTGTTTACTTAACATTTAAAAATCCATTTCTCCTTAAAATGAAACACTTTTTTTAAGGTAGGTAATATTTTAATTTGACTAGAAGTTAGT TTTTCTTTCTTAGTTTAAGCTACTTTGTTAGTCTTACAATTTTAATAAGTATAGTTATTACCTAGTGACATTTCTGTTTGTTTTTTTAAG GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATT TGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCAAAAAGTAGAAGCTCAGAAACAGGAGAA CCAGCAGAAATCCACCAATGTAGTCTATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGTGGTTGGAACAAGGGGTGGGTTCCG AGGATGTACCGTGTGGCTAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGGAGGAGTACCTTGTCTCCCATGCCAT CCCTTGTTACTCCCTGGATGGGGACAATGTCCGTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGACAGAGAGGAAAATATCCG CCGGATTGCTGAGGTGGCTAAGCTGTTTGCTGATGCTGGTCTGGTCTGCATTACCAGCTTTATTTCTCCATTCGCAAAGGATCGTGAGAA TGCCCGCAAAATACATGAATCAGCAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTAAATATTTGTGAAAGCAGAGACGTAAA AGGCCTCTATAAAAGGGCCAGAGCTGGGGAGATTAAAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACTCCTGAGCGTGT GCTTAAAACCAATTTGTCCACAGTGAGTGACTGTGTCCACCAGGTAGTGGAACTTCTGCAAGAGCAGAACATTGTACCCTATACTATAAT CAAAGATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCACGTCCGAGCTGAGGCTGAAACTCTCCCTTCATTATCAATTACTAA GCTGGATCTCCAGTGGGTCCAGGTTTTGAGCGAAGGCTGGGCCACTCCCCTCAAAGGTTTCATGCGGGAGAAGGAGTACTTACAGGTTAT GCACTTTGACACCCTGCTAGATGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCCCGTCTCTGCAGAGGATAAGACACGGCTGGA AGGGTGCAGCAAGTTTGTCCTGGCACATGGTGGACGGAGGGTAGCTATCTTACGAGACGCTGAATTCTATGAACACAGAAAAGAGGAACG CTGTTCCCGTGTTTGGGGGACAACATGTACAAAACACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCTGGTTGGTGGAGACCT TCAGGTGCTGGAGAAAATAAGATGGAATGATGGGCTGGACCAATACCGTCTGACACCTCTGGAGCTCAAACAGAAATGTAAAGAAATGAA TGCTGATGCGGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCCATGCCCTGTTGATGCAGGACACTCGCCGCAGGCTCCTAGA GAGGGGCTACAAGCACCCGGTCCTCCTACTACACCCTCTGGGCGGCTGGACCAAGGATGACGATGTGCCTCTAGACTGGCGGATGAAGCA GCACGCGGCTGTGCTCGAGGAAGGGGTCCTGGATCCCAAGTCAACCATTGTTGCCATCTTTCCGTCTCCCATGTTATATGCTGGCCCCAC AGAGGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTGTGGGGAGGGACCCTGCAGGAATGCCCCATCCTGA AACCAAGAAGGATCTGTATGAACCCACTCATGGGGGCAAGGTCTTGAGCATGGCCCCTGGCCTCACCTCTGTGGAAATCATTCCATTCCG AGTGGCTGCCTACAACAAAGCCAAAAAAGCCATGGACTTCTATGATCCAGCAAGGCACAATGAGTTTGACTTCATCTCAGGAACTCGAAT GAGGAAGCTCGCCCGGGAAGGAGAGAATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTCCTGACAGATTATTACAGGTCCCT GGAGAAGAACTAAGCCTTTGGCTCCAGAGTTTCTTTCTGAAGTGCTCTTTGATTACCTTTTCTATTTTTATGATTAGATGCTTTGTATTA AATTGCTTCTCAATGATGCATTTTAATCTTTTATAATGAAGTAAAAGTTGTGTCTATAATTAAAAAAAAATATATATATATACACACACA CATATACATACAAAGTCAAACTGAAGACCAAATCTTAGCAGGTAAAAGCAATATTCTTATACATTTCATAATAAAATTAGCTCTATGTAT TTTCTACTGCACCTGAGCAGGCAGGTCCCAGATTTCTTAAGGCTTTGTTTGACCATGTGTCTAGTTACTTGCTGAAAAGTGAATATATTT TCCAGCATGTCTTGACAACCTGTACTCTTCCAATGTCATTTATCAGTTGTAAAATATATCAGATTGTGTCCTCTTCTGTACAATTGACAA AAAAAAAAATTTTTTTTTCTCACTCTAAAAGAGGTGTGGCTCACATCAAGATTCTTCCTGATATTTTACCTCATGCTGTACAAAGCCTTA ATGTTGTAATCATATCTTACGTGTTGAAGACCTGACTGGAGAAACAAAATGTGCAATAACGTGAATTTTATCTTAGAGATCTGTGCAGCC TATTTCTGTCACAAAAGTTATATTGTCTAATAAGAGAAGTCTTAATGGCCTCTGTGAATAATGTAACTCCAGTTACACGGTGACTTTTAA TAGCATACAGTGATTTGATGAAAGGACGTCAAACAATGTGGCGATGTCGTGGAAAGTTATCTTTCCCGCTCTTTGCTGTGGTCATTGTGT CTTGCAGAAAGGATGGCCCTGATGCAGCAGCAGCGCCAGCTGTAATAAAAAATAATTCACACTATCAGACTAGCAAGGCACTAGAACTGG AAAAGACCACAGAAAACAAAGAATCCAACCCTTTCATCTTACAGGTGAACAAACTGTGATGATGCACATGTATGTGTTTTGTAAGCTGTG AGCACCGTAACAAAATGTAAATTTGCCATTATTAGGAAGTGCTGGTGGCAGTGAAGAAGCACCCAGGCCACTTGACTCCCAGTCTGGTGC CCTGTCTACACCAGACAACACAGGAGCTGGGTCAGATTCCCCTCAGCTGCTTAACAAAGTTCCTCGAACAGAAAGTGCTTACAAAGCTGC CTTCTCGGATACTGAAAGGTCGAGTTTTCTGAACTGCACTGATTTTATTGCAGTTGAAAAAAAAAAAAAGCTATTCCAAAGATTTCAAGC TGTTCTGAGACATCTTCTGATGGCTTTACTTCCTGAGAGGCAATGTTTTTACTTTATGCATAATTCATTGTTGCCAAGGAATAAAGTGAA GAAACAGCACCTTTTAATATATAGGTCTCTCTGGAAGAGACCTAAATTAGAAAGAGAAAACTGTGACAATTTTCATATTCTCATTCTTAA AAAACACTAATCTTAACTAACAAAAGTTCTTTTGAGAATAAGTTACACACAATGGCCACAGCAGTTTGTCTTTAATAGTATAGTGCCTAT ACTCATGTAATCGGTTACTCACTACTGCCTTTAAAAAAAAAAACCAGCATATTTATTGAAAACATGAGACAGGATTATAGTGCCTTAACC GATATATTTTGTGACTTAAAAAATACATTTAAAACTGCTCTTCTGCTCTAGTACCATGCTTAGTGCAAATGATTATTTCTATGTACAACT >In-frame_ENST00000328142_ENST00000361175_TCGA-FG-A70Z_ATAD1_chr10_89574194_-_PAPSS2_chr10_89468952_length(amino acids)=669AA_start in transcript=253_stop in transcript=2262 MFVFLRLTFKMVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQENQQKSTNVVYQAHHVSRNKRGQVVG TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPF AKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNI VPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDDGVINMSIPIVLPVSAE DKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTPLELKQ KCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAIFPSPM LYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARHNEFDF -------------------------------------------------------------- >In-frame_ENST00000328142_ENST00000456849_TCGA-FG-A70Z_ATAD1_chr10_89574194_-_PAPSS2_chr10_89468952_length(transcript)=4011nt_BP=445nt GTATTTTTCAAATAAAATGATTAATTCTACTACCAAATAAATCTTAATTTCTAGTCTACTTCTAGTTTGCAAGAGGAGCTTTAAATGTAT TTGTTTACTTAACATTTAAAAATCCATTTCTCCTTAAAATGAAACACTTTTTTTAAGGTAGGTAATATTTTAATTTGACTAGAAGTTAGT TTTTCTTTCTTAGTTTAAGCTACTTTGTTAGTCTTACAATTTTAATAAGTATAGTTATTACCTAGTGACATTTCTGTTTGTTTTTTTAAG GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATT TGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCAAAAAGTAGAAGCTCAGAAACAGGAGAA CCAGCAGAAATCCACCAATGTAGTCTATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGTGGTTGGAACAAGGGGTGGGTTCCG AGGATGTACCGTGTGGCTAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGGAGGAGTACCTTGTCTCCCATGCCAT CCCTTGTTACTCCCTGGATGGGGACAATGTCCGTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGACAGAGAGGAAAATATCCG CCGGATTGCTGAGGTGGCTAAGCTGTTTGCTGATGCTGGTCTGGTCTGCATTACCAGCTTTATTTCTCCATTCGCAAAGGATCGTGAGAA TGCCCGCAAAATACATGAATCAGCAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTAAATATTTGTGAAAGCAGAGACGTAAA AGGCCTCTATAAAAGGGCCAGAGCTGGGGAGATTAAAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACTCCTGAGCGTGT GCTTAAAACCAATTTGTCCACAGTGAGTGACTGTGTCCACCAGGTAGTGGAACTTCTGCAAGAGCAGAACATTGTACCCTATACTATAAT CAAAGATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCACGTCCGAGCTGAGGCTGAAACTCTCCCTTCATTATCAATTACTAA GCTGGATCTCCAGTGGGTCCAGGTTTTGAGCGAAGGCTGGGCCACTCCCCTCAAAGGTTTCATGCGGGAGAAGGAGTACTTACAGGTTAT GCACTTTGACACCCTGCTAGATGGCATGGCCCTTCCTGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCCCGTCTCTGCAGAGGA TAAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACATGGTGGACGGAGGGTAGCTATCTTACGAGACGCTGAATTCTATGAACA CAGAAAAGAGGAACGCTGTTCCCGTGTTTGGGGGACAACATGTACAAAACACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCT GGTTGGTGGAGACCTTCAGGTGCTGGAGAAAATAAGATGGAATGATGGGCTGGACCAATACCGTCTGACACCTCTGGAGCTCAAACAGAA ATGTAAAGAAATGAATGCTGATGCGGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCCATGCCCTGTTGATGCAGGACACTCG CCGCAGGCTCCTAGAGAGGGGCTACAAGCACCCGGTCCTCCTACTACACCCTCTGGGCGGCTGGACCAAGGATGACGATGTGCCTCTAGA CTGGCGGATGAAGCAGCACGCGGCTGTGCTCGAGGAAGGGGTCCTGGATCCCAAGTCAACCATTGTTGCCATCTTTCCGTCTCCCATGTT ATATGCTGGCCCCACAGAGGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTGTGGGGAGGGACCCTGCAGG AATGCCCCATCCTGAAACCAAGAAGGATCTGTATGAACCCACTCATGGGGGCAAGGTCTTGAGCATGGCCCCTGGCCTCACCTCTGTGGA AATCATTCCATTCCGAGTGGCTGCCTACAACAAAGCCAAAAAAGCCATGGACTTCTATGATCCAGCAAGGCACAATGAGTTTGACTTCAT CTCAGGAACTCGAATGAGGAAGCTCGCCCGGGAAGGAGAGAATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTCCTGACAGA TTATTACAGGTCCCTGGAGAAGAACTAAGCCTTTGGCTCCAGAGTTTCTTTCTGAAGTGCTCTTTGATTACCTTTTCTATTTTTATGATT AGATGCTTTGTATTAAATTGCTTCTCAATGATGCATTTTAATCTTTTATAATGAAGTAAAAGTTGTGTCTATAATTAAAAAAAAATATAT ATATATACACACACACATATACATACAAAGTCAAACTGAAGACCAAATCTTAGCAGGTAAAAGCAATATTCTTATACATTTCATAATAAA ATTAGCTCTATGTATTTTCTACTGCACCTGAGCAGGCAGGTCCCAGATTTCTTAAGGCTTTGTTTGACCATGTGTCTAGTTACTTGCTGA AAAGTGAATATATTTTCCAGCATGTCTTGACAACCTGTACTCTTCCAATGTCATTTATCAGTTGTAAAATATATCAGATTGTGTCCTCTT CTGTACAATTGACAAAAAAAAAAATTTTTTTTTCTCACTCTAAAAGAGGTGTGGCTCACATCAAGATTCTTCCTGATATTTTACCTCATG CTGTACAAAGCCTTAATGTTGTAATCATATCTTACGTGTTGAAGACCTGACTGGAGAAACAAAATGTGCAATAACGTGAATTTTATCTTA GAGATCTGTGCAGCCTATTTCTGTCACAAAAGTTATATTGTCTAATAAGAGAAGTCTTAATGGCCTCTGTGAATAATGTAACTCCAGTTA CACGGTGACTTTTAATAGCATACAGTGATTTGATGAAAGGACGTCAAACAATGTGGCGATGTCGTGGAAAGTTATCTTTCCCGCTCTTTG CTGTGGTCATTGTGTCTTGCAGAAAGGATGGCCCTGATGCAGCAGCAGCGCCAGCTGTAATAAAAAATAATTCACACTATCAGACTAGCA AGGCACTAGAACTGGAAAAGACCACAGAAAACAAAGAATCCAACCCTTTCATCTTACAGGTGAACAAACTGTGATGATGCACATGTATGT GTTTTGTAAGCTGTGAGCACCGTAACAAAATGTAAATTTGCCATTATTAGGAAGTGCTGGTGGCAGTGAAGAAGCACCCAGGCCACTTGA CTCCCAGTCTGGTGCCCTGTCTACACCAGACAACACAGGAGCTGGGTCAGATTCCCCTCAGCTGCTTAACAAAGTTCCTCGAACAGAAAG TGCTTACAAAGCTGCCTTCTCGGATACTGAAAGGTCGAGTTTTCTGAACTGCACTGATTTTATTGCAGTTGAAAAAAAAAAAAAGCTATT CCAAAGATTTCAAGCTGTTCTGAGACATCTTCTGATGGCTTTACTTCCTGAGAGGCAATGTTTTTACTTTATGCATAATTCATTGTTGCC AAGGAATAAAGTGAAGAAACAGCACCTTTTAATATATAGGTCTCTCTGGAAGAGACCTAAATTAGAAAGAGAAAACTGTGACAATTTTCA TATTCTCATTCTTAAAAAACACTAATCTTAACTAACAAAAGTTCTTTTGAGAATAAGTTACACACAATGGCCACAGCAGTTTGTCTTTAA TAGTATAGTGCCTATACTCATGTAATCGGTTACTCACTACTGCCTTTAAAAAAAAAAACCAGCATATTTATTGAAAACATGAGACAGGAT TATAGTGCCTTAACCGATATATTTTGTGACTTAAAAAATACATTTAAAACTGCTCTTCTGCTCTAGTACCATGCTTAGTGCAAATGATTA >In-frame_ENST00000328142_ENST00000456849_TCGA-FG-A70Z_ATAD1_chr10_89574194_-_PAPSS2_chr10_89468952_length(amino acids)=674AA_start in transcript=253_stop in transcript=2277 MFVFLRLTFKMVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQENQQKSTNVVYQAHHVSRNKRGQVVG TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPF AKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNI VPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDGMALPDGVINMSIPIVL PVSAEDKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTP LELKQKCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAI FPSPMLYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARH -------------------------------------------------------------- >In-frame_ENST00000328142_ENST00000427144_TCGA-FG-A70Z_ATAD1_chr10_89574194_-_PAPSS2_chr10_89468952_length(transcript)=2326nt_BP=445nt GTATTTTTCAAATAAAATGATTAATTCTACTACCAAATAAATCTTAATTTCTAGTCTACTTCTAGTTTGCAAGAGGAGCTTTAAATGTAT TTGTTTACTTAACATTTAAAAATCCATTTCTCCTTAAAATGAAACACTTTTTTTAAGGTAGGTAATATTTTAATTTGACTAGAAGTTAGT TTTTCTTTCTTAGTTTAAGCTACTTTGTTAGTCTTACAATTTTAATAAGTATAGTTATTACCTAGTGACATTTCTGTTTGTTTTTTTAAG GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATT TGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCAAAAAGTAGAAGCTCAGAAACAGGAGAA CCAGCAGAAATCCACCAATGTAGTCTATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGTGGTTGGAACAAGGGGTGGGTTCCG AGGATGTACCGTGTGGCTAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGGAGGAGTACCTTGTCTCCCATGCCAT CCCTTGTTACTCCCTGGATGGGGACAATGTCCGTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGACAGAGAGGAAAATATCCG CCGGATTGCTGAGGTGGCTAAGCTGTTTGCTGATGCTGGTCTGGTCTGCATTACCAGCTTTATTTCTCCATTCGCAAAGGATCGTGAGAA TGCCCGCAAAATACATGAATCAGCAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTAAATATTTGTGAAAGCAGAGACGTAAA AGGCCTCTATAAAAGGGCCAGAGCTGGGGAGATTAAAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACTCCTGAGCGTGT GCTTAAAACCAATTTGTCCACAGTGAGTGACTGTGTCCACCAGGTAGTGGAACTTCTGCAAGAGCAGAACATTGTACCCTATACTATAAT CAAAGATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCACGTCCGAGCTGAGGCTGAAACTCTCCCTTCATTATCAATTACTAA GCTGGATCTCCAGTGGGTCCAGGTTTTGAGCGAAGGCTGGGCCACTCCCCTCAAAGGTTTCATGCGGGAGAAGGAGTACTTACAGGTTAT GCACTTTGACACCCTGCTAGATGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCCCGTCTCTGCAGAGGATAAGACACGGCTGGA AGGGTGCAGCAAGTTTGTCCTGGCACATGGTGGACGGAGGGTAGCTATCTTACGAGACGCTGAATTCTATGAACACAGAAAAGAGGAACG CTGTTCCCGTGTTTGGGGGACAACATGTACAAAACACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCTGGTTGGTGGAGACCT TCAGGTGCTGGAGAAAATAAGATGGAATGATGGGCTGGACCAATACCGTCTGACACCTCTGGAGCTCAAACAGAAATGTAAAGAAATGAA TGCTGATGCGGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCCATGCCCTGTTGATGCAGGACACTCGCCGCAGGCTCCTAGA GAGGGGCTACAAGCACCCGGTCCTCCTACTACACCCTCTGGGCGGCTGGACCAAGGATGACGATGTGCCTCTAGACTGGCGGATGAAGCA GCACGCGGCTGTGCTCGAGGAAGGGGTCCTGGATCCCAAGTCAACCATTGTTGCCATCTTTCCGTCTCCCATGTTATATGCTGGCCCCAC AGAGGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTGTGGGGAGGGACCCTGCAGGAATGCCCCATCCTGA AACCAAGAAGGATCTGTATGAACCCACTCATGGGGGCAAGGTCTTGAGCATGGCCCCTGGCCTCACCTCTGTGGAAATCATTCCATTCCG AGTGGCTGCCTACAACAAAGCCAAAAAAGCCATGGACTTCTATGATCCAGCAAGGCACAATGAGTTTGACTTCATCTCAGGAACTCGAAT GAGGAAGCTCGCCCGGGAAGGAGAGAATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTCCTGACAGATTATTACAGGTCCCT >In-frame_ENST00000328142_ENST00000427144_TCGA-FG-A70Z_ATAD1_chr10_89574194_-_PAPSS2_chr10_89468952_length(amino acids)=669AA_start in transcript=253_stop in transcript=2262 MFVFLRLTFKMVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQENQQKSTNVVYQAHHVSRNKRGQVVG TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPF AKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNI VPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDDGVINMSIPIVLPVSAE DKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTPLELKQ KCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAIFPSPM LYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARHNEFDF -------------------------------------------------------------- >In-frame_ENST00000328142_ENST00000361175_TCGA-FG-A70Z_ATAD1_chr10_89574195_-_PAPSS2_chr10_89468953_length(transcript)=3998nt_BP=445nt GTATTTTTCAAATAAAATGATTAATTCTACTACCAAATAAATCTTAATTTCTAGTCTACTTCTAGTTTGCAAGAGGAGCTTTAAATGTAT TTGTTTACTTAACATTTAAAAATCCATTTCTCCTTAAAATGAAACACTTTTTTTAAGGTAGGTAATATTTTAATTTGACTAGAAGTTAGT TTTTCTTTCTTAGTTTAAGCTACTTTGTTAGTCTTACAATTTTAATAAGTATAGTTATTACCTAGTGACATTTCTGTTTGTTTTTTTAAG GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATT TGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCAAAAAGTAGAAGCTCAGAAACAGGAGAA CCAGCAGAAATCCACCAATGTAGTCTATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGTGGTTGGAACAAGGGGTGGGTTCCG AGGATGTACCGTGTGGCTAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGGAGGAGTACCTTGTCTCCCATGCCAT CCCTTGTTACTCCCTGGATGGGGACAATGTCCGTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGACAGAGAGGAAAATATCCG CCGGATTGCTGAGGTGGCTAAGCTGTTTGCTGATGCTGGTCTGGTCTGCATTACCAGCTTTATTTCTCCATTCGCAAAGGATCGTGAGAA TGCCCGCAAAATACATGAATCAGCAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTAAATATTTGTGAAAGCAGAGACGTAAA AGGCCTCTATAAAAGGGCCAGAGCTGGGGAGATTAAAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACTCCTGAGCGTGT GCTTAAAACCAATTTGTCCACAGTGAGTGACTGTGTCCACCAGGTAGTGGAACTTCTGCAAGAGCAGAACATTGTACCCTATACTATAAT CAAAGATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCACGTCCGAGCTGAGGCTGAAACTCTCCCTTCATTATCAATTACTAA GCTGGATCTCCAGTGGGTCCAGGTTTTGAGCGAAGGCTGGGCCACTCCCCTCAAAGGTTTCATGCGGGAGAAGGAGTACTTACAGGTTAT GCACTTTGACACCCTGCTAGATGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCCCGTCTCTGCAGAGGATAAGACACGGCTGGA AGGGTGCAGCAAGTTTGTCCTGGCACATGGTGGACGGAGGGTAGCTATCTTACGAGACGCTGAATTCTATGAACACAGAAAAGAGGAACG CTGTTCCCGTGTTTGGGGGACAACATGTACAAAACACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCTGGTTGGTGGAGACCT TCAGGTGCTGGAGAAAATAAGATGGAATGATGGGCTGGACCAATACCGTCTGACACCTCTGGAGCTCAAACAGAAATGTAAAGAAATGAA TGCTGATGCGGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCCATGCCCTGTTGATGCAGGACACTCGCCGCAGGCTCCTAGA GAGGGGCTACAAGCACCCGGTCCTCCTACTACACCCTCTGGGCGGCTGGACCAAGGATGACGATGTGCCTCTAGACTGGCGGATGAAGCA GCACGCGGCTGTGCTCGAGGAAGGGGTCCTGGATCCCAAGTCAACCATTGTTGCCATCTTTCCGTCTCCCATGTTATATGCTGGCCCCAC AGAGGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTGTGGGGAGGGACCCTGCAGGAATGCCCCATCCTGA AACCAAGAAGGATCTGTATGAACCCACTCATGGGGGCAAGGTCTTGAGCATGGCCCCTGGCCTCACCTCTGTGGAAATCATTCCATTCCG AGTGGCTGCCTACAACAAAGCCAAAAAAGCCATGGACTTCTATGATCCAGCAAGGCACAATGAGTTTGACTTCATCTCAGGAACTCGAAT GAGGAAGCTCGCCCGGGAAGGAGAGAATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTCCTGACAGATTATTACAGGTCCCT GGAGAAGAACTAAGCCTTTGGCTCCAGAGTTTCTTTCTGAAGTGCTCTTTGATTACCTTTTCTATTTTTATGATTAGATGCTTTGTATTA AATTGCTTCTCAATGATGCATTTTAATCTTTTATAATGAAGTAAAAGTTGTGTCTATAATTAAAAAAAAATATATATATATACACACACA CATATACATACAAAGTCAAACTGAAGACCAAATCTTAGCAGGTAAAAGCAATATTCTTATACATTTCATAATAAAATTAGCTCTATGTAT TTTCTACTGCACCTGAGCAGGCAGGTCCCAGATTTCTTAAGGCTTTGTTTGACCATGTGTCTAGTTACTTGCTGAAAAGTGAATATATTT TCCAGCATGTCTTGACAACCTGTACTCTTCCAATGTCATTTATCAGTTGTAAAATATATCAGATTGTGTCCTCTTCTGTACAATTGACAA AAAAAAAAATTTTTTTTTCTCACTCTAAAAGAGGTGTGGCTCACATCAAGATTCTTCCTGATATTTTACCTCATGCTGTACAAAGCCTTA ATGTTGTAATCATATCTTACGTGTTGAAGACCTGACTGGAGAAACAAAATGTGCAATAACGTGAATTTTATCTTAGAGATCTGTGCAGCC TATTTCTGTCACAAAAGTTATATTGTCTAATAAGAGAAGTCTTAATGGCCTCTGTGAATAATGTAACTCCAGTTACACGGTGACTTTTAA TAGCATACAGTGATTTGATGAAAGGACGTCAAACAATGTGGCGATGTCGTGGAAAGTTATCTTTCCCGCTCTTTGCTGTGGTCATTGTGT CTTGCAGAAAGGATGGCCCTGATGCAGCAGCAGCGCCAGCTGTAATAAAAAATAATTCACACTATCAGACTAGCAAGGCACTAGAACTGG AAAAGACCACAGAAAACAAAGAATCCAACCCTTTCATCTTACAGGTGAACAAACTGTGATGATGCACATGTATGTGTTTTGTAAGCTGTG AGCACCGTAACAAAATGTAAATTTGCCATTATTAGGAAGTGCTGGTGGCAGTGAAGAAGCACCCAGGCCACTTGACTCCCAGTCTGGTGC CCTGTCTACACCAGACAACACAGGAGCTGGGTCAGATTCCCCTCAGCTGCTTAACAAAGTTCCTCGAACAGAAAGTGCTTACAAAGCTGC CTTCTCGGATACTGAAAGGTCGAGTTTTCTGAACTGCACTGATTTTATTGCAGTTGAAAAAAAAAAAAAGCTATTCCAAAGATTTCAAGC TGTTCTGAGACATCTTCTGATGGCTTTACTTCCTGAGAGGCAATGTTTTTACTTTATGCATAATTCATTGTTGCCAAGGAATAAAGTGAA GAAACAGCACCTTTTAATATATAGGTCTCTCTGGAAGAGACCTAAATTAGAAAGAGAAAACTGTGACAATTTTCATATTCTCATTCTTAA AAAACACTAATCTTAACTAACAAAAGTTCTTTTGAGAATAAGTTACACACAATGGCCACAGCAGTTTGTCTTTAATAGTATAGTGCCTAT ACTCATGTAATCGGTTACTCACTACTGCCTTTAAAAAAAAAAACCAGCATATTTATTGAAAACATGAGACAGGATTATAGTGCCTTAACC GATATATTTTGTGACTTAAAAAATACATTTAAAACTGCTCTTCTGCTCTAGTACCATGCTTAGTGCAAATGATTATTTCTATGTACAACT >In-frame_ENST00000328142_ENST00000361175_TCGA-FG-A70Z_ATAD1_chr10_89574195_-_PAPSS2_chr10_89468953_length(amino acids)=669AA_start in transcript=253_stop in transcript=2262 MFVFLRLTFKMVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQENQQKSTNVVYQAHHVSRNKRGQVVG TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPF AKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNI VPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDDGVINMSIPIVLPVSAE DKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTPLELKQ KCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAIFPSPM LYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARHNEFDF -------------------------------------------------------------- >In-frame_ENST00000328142_ENST00000456849_TCGA-FG-A70Z_ATAD1_chr10_89574195_-_PAPSS2_chr10_89468953_length(transcript)=4011nt_BP=445nt GTATTTTTCAAATAAAATGATTAATTCTACTACCAAATAAATCTTAATTTCTAGTCTACTTCTAGTTTGCAAGAGGAGCTTTAAATGTAT TTGTTTACTTAACATTTAAAAATCCATTTCTCCTTAAAATGAAACACTTTTTTTAAGGTAGGTAATATTTTAATTTGACTAGAAGTTAGT TTTTCTTTCTTAGTTTAAGCTACTTTGTTAGTCTTACAATTTTAATAAGTATAGTTATTACCTAGTGACATTTCTGTTTGTTTTTTTAAG GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATT TGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCAAAAAGTAGAAGCTCAGAAACAGGAGAA CCAGCAGAAATCCACCAATGTAGTCTATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGTGGTTGGAACAAGGGGTGGGTTCCG AGGATGTACCGTGTGGCTAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGGAGGAGTACCTTGTCTCCCATGCCAT CCCTTGTTACTCCCTGGATGGGGACAATGTCCGTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGACAGAGAGGAAAATATCCG CCGGATTGCTGAGGTGGCTAAGCTGTTTGCTGATGCTGGTCTGGTCTGCATTACCAGCTTTATTTCTCCATTCGCAAAGGATCGTGAGAA TGCCCGCAAAATACATGAATCAGCAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTAAATATTTGTGAAAGCAGAGACGTAAA AGGCCTCTATAAAAGGGCCAGAGCTGGGGAGATTAAAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACTCCTGAGCGTGT GCTTAAAACCAATTTGTCCACAGTGAGTGACTGTGTCCACCAGGTAGTGGAACTTCTGCAAGAGCAGAACATTGTACCCTATACTATAAT CAAAGATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCACGTCCGAGCTGAGGCTGAAACTCTCCCTTCATTATCAATTACTAA GCTGGATCTCCAGTGGGTCCAGGTTTTGAGCGAAGGCTGGGCCACTCCCCTCAAAGGTTTCATGCGGGAGAAGGAGTACTTACAGGTTAT GCACTTTGACACCCTGCTAGATGGCATGGCCCTTCCTGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCCCGTCTCTGCAGAGGA TAAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACATGGTGGACGGAGGGTAGCTATCTTACGAGACGCTGAATTCTATGAACA CAGAAAAGAGGAACGCTGTTCCCGTGTTTGGGGGACAACATGTACAAAACACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCT GGTTGGTGGAGACCTTCAGGTGCTGGAGAAAATAAGATGGAATGATGGGCTGGACCAATACCGTCTGACACCTCTGGAGCTCAAACAGAA ATGTAAAGAAATGAATGCTGATGCGGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCCATGCCCTGTTGATGCAGGACACTCG CCGCAGGCTCCTAGAGAGGGGCTACAAGCACCCGGTCCTCCTACTACACCCTCTGGGCGGCTGGACCAAGGATGACGATGTGCCTCTAGA CTGGCGGATGAAGCAGCACGCGGCTGTGCTCGAGGAAGGGGTCCTGGATCCCAAGTCAACCATTGTTGCCATCTTTCCGTCTCCCATGTT ATATGCTGGCCCCACAGAGGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTGTGGGGAGGGACCCTGCAGG AATGCCCCATCCTGAAACCAAGAAGGATCTGTATGAACCCACTCATGGGGGCAAGGTCTTGAGCATGGCCCCTGGCCTCACCTCTGTGGA AATCATTCCATTCCGAGTGGCTGCCTACAACAAAGCCAAAAAAGCCATGGACTTCTATGATCCAGCAAGGCACAATGAGTTTGACTTCAT CTCAGGAACTCGAATGAGGAAGCTCGCCCGGGAAGGAGAGAATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTCCTGACAGA TTATTACAGGTCCCTGGAGAAGAACTAAGCCTTTGGCTCCAGAGTTTCTTTCTGAAGTGCTCTTTGATTACCTTTTCTATTTTTATGATT AGATGCTTTGTATTAAATTGCTTCTCAATGATGCATTTTAATCTTTTATAATGAAGTAAAAGTTGTGTCTATAATTAAAAAAAAATATAT ATATATACACACACACATATACATACAAAGTCAAACTGAAGACCAAATCTTAGCAGGTAAAAGCAATATTCTTATACATTTCATAATAAA ATTAGCTCTATGTATTTTCTACTGCACCTGAGCAGGCAGGTCCCAGATTTCTTAAGGCTTTGTTTGACCATGTGTCTAGTTACTTGCTGA AAAGTGAATATATTTTCCAGCATGTCTTGACAACCTGTACTCTTCCAATGTCATTTATCAGTTGTAAAATATATCAGATTGTGTCCTCTT CTGTACAATTGACAAAAAAAAAAATTTTTTTTTCTCACTCTAAAAGAGGTGTGGCTCACATCAAGATTCTTCCTGATATTTTACCTCATG CTGTACAAAGCCTTAATGTTGTAATCATATCTTACGTGTTGAAGACCTGACTGGAGAAACAAAATGTGCAATAACGTGAATTTTATCTTA GAGATCTGTGCAGCCTATTTCTGTCACAAAAGTTATATTGTCTAATAAGAGAAGTCTTAATGGCCTCTGTGAATAATGTAACTCCAGTTA CACGGTGACTTTTAATAGCATACAGTGATTTGATGAAAGGACGTCAAACAATGTGGCGATGTCGTGGAAAGTTATCTTTCCCGCTCTTTG CTGTGGTCATTGTGTCTTGCAGAAAGGATGGCCCTGATGCAGCAGCAGCGCCAGCTGTAATAAAAAATAATTCACACTATCAGACTAGCA AGGCACTAGAACTGGAAAAGACCACAGAAAACAAAGAATCCAACCCTTTCATCTTACAGGTGAACAAACTGTGATGATGCACATGTATGT GTTTTGTAAGCTGTGAGCACCGTAACAAAATGTAAATTTGCCATTATTAGGAAGTGCTGGTGGCAGTGAAGAAGCACCCAGGCCACTTGA CTCCCAGTCTGGTGCCCTGTCTACACCAGACAACACAGGAGCTGGGTCAGATTCCCCTCAGCTGCTTAACAAAGTTCCTCGAACAGAAAG TGCTTACAAAGCTGCCTTCTCGGATACTGAAAGGTCGAGTTTTCTGAACTGCACTGATTTTATTGCAGTTGAAAAAAAAAAAAAGCTATT CCAAAGATTTCAAGCTGTTCTGAGACATCTTCTGATGGCTTTACTTCCTGAGAGGCAATGTTTTTACTTTATGCATAATTCATTGTTGCC AAGGAATAAAGTGAAGAAACAGCACCTTTTAATATATAGGTCTCTCTGGAAGAGACCTAAATTAGAAAGAGAAAACTGTGACAATTTTCA TATTCTCATTCTTAAAAAACACTAATCTTAACTAACAAAAGTTCTTTTGAGAATAAGTTACACACAATGGCCACAGCAGTTTGTCTTTAA TAGTATAGTGCCTATACTCATGTAATCGGTTACTCACTACTGCCTTTAAAAAAAAAAACCAGCATATTTATTGAAAACATGAGACAGGAT TATAGTGCCTTAACCGATATATTTTGTGACTTAAAAAATACATTTAAAACTGCTCTTCTGCTCTAGTACCATGCTTAGTGCAAATGATTA >In-frame_ENST00000328142_ENST00000456849_TCGA-FG-A70Z_ATAD1_chr10_89574195_-_PAPSS2_chr10_89468953_length(amino acids)=674AA_start in transcript=253_stop in transcript=2277 MFVFLRLTFKMVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQENQQKSTNVVYQAHHVSRNKRGQVVG TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPF AKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNI VPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDGMALPDGVINMSIPIVL PVSAEDKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTP LELKQKCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAI FPSPMLYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARH -------------------------------------------------------------- >In-frame_ENST00000328142_ENST00000427144_TCGA-FG-A70Z_ATAD1_chr10_89574195_-_PAPSS2_chr10_89468953_length(transcript)=2326nt_BP=445nt GTATTTTTCAAATAAAATGATTAATTCTACTACCAAATAAATCTTAATTTCTAGTCTACTTCTAGTTTGCAAGAGGAGCTTTAAATGTAT TTGTTTACTTAACATTTAAAAATCCATTTCTCCTTAAAATGAAACACTTTTTTTAAGGTAGGTAATATTTTAATTTGACTAGAAGTTAGT TTTTCTTTCTTAGTTTAAGCTACTTTGTTAGTCTTACAATTTTAATAAGTATAGTTATTACCTAGTGACATTTCTGTTTGTTTTTTTAAG GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATT TGGTGCAGTGACATACTTTACTATCAAATGGATGGTAGATGCAATTGATCCAACCAGAAAGCAAAAAGTAGAAGCTCAGAAACAGGAGAA CCAGCAGAAATCCACCAATGTAGTCTATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGTGGTTGGAACAAGGGGTGGGTTCCG AGGATGTACCGTGTGGCTAACAGGTCTCTCTGGTGCTGGAAAAACAACGATAAGTTTTGCCCTGGAGGAGTACCTTGTCTCCCATGCCAT CCCTTGTTACTCCCTGGATGGGGACAATGTCCGTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGACAGAGAGGAAAATATCCG CCGGATTGCTGAGGTGGCTAAGCTGTTTGCTGATGCTGGTCTGGTCTGCATTACCAGCTTTATTTCTCCATTCGCAAAGGATCGTGAGAA TGCCCGCAAAATACATGAATCAGCAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTAAATATTTGTGAAAGCAGAGACGTAAA AGGCCTCTATAAAAGGGCCAGAGCTGGGGAGATTAAAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACTCCTGAGCGTGT GCTTAAAACCAATTTGTCCACAGTGAGTGACTGTGTCCACCAGGTAGTGGAACTTCTGCAAGAGCAGAACATTGTACCCTATACTATAAT CAAAGATATCCACGAACTCTTTGTGCCGGAAAACAAACTTGACCACGTCCGAGCTGAGGCTGAAACTCTCCCTTCATTATCAATTACTAA GCTGGATCTCCAGTGGGTCCAGGTTTTGAGCGAAGGCTGGGCCACTCCCCTCAAAGGTTTCATGCGGGAGAAGGAGTACTTACAGGTTAT GCACTTTGACACCCTGCTAGATGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCCCGTCTCTGCAGAGGATAAGACACGGCTGGA AGGGTGCAGCAAGTTTGTCCTGGCACATGGTGGACGGAGGGTAGCTATCTTACGAGACGCTGAATTCTATGAACACAGAAAAGAGGAACG CTGTTCCCGTGTTTGGGGGACAACATGTACAAAACACCCCCATATCAAAATGGTGATGGAAAGTGGGGACTGGCTGGTTGGTGGAGACCT TCAGGTGCTGGAGAAAATAAGATGGAATGATGGGCTGGACCAATACCGTCTGACACCTCTGGAGCTCAAACAGAAATGTAAAGAAATGAA TGCTGATGCGGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCCATGCCCTGTTGATGCAGGACACTCGCCGCAGGCTCCTAGA GAGGGGCTACAAGCACCCGGTCCTCCTACTACACCCTCTGGGCGGCTGGACCAAGGATGACGATGTGCCTCTAGACTGGCGGATGAAGCA GCACGCGGCTGTGCTCGAGGAAGGGGTCCTGGATCCCAAGTCAACCATTGTTGCCATCTTTCCGTCTCCCATGTTATATGCTGGCCCCAC AGAGGTCCAGTGGCACTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTGTGGGGAGGGACCCTGCAGGAATGCCCCATCCTGA AACCAAGAAGGATCTGTATGAACCCACTCATGGGGGCAAGGTCTTGAGCATGGCCCCTGGCCTCACCTCTGTGGAAATCATTCCATTCCG AGTGGCTGCCTACAACAAAGCCAAAAAAGCCATGGACTTCTATGATCCAGCAAGGCACAATGAGTTTGACTTCATCTCAGGAACTCGAAT GAGGAAGCTCGCCCGGGAAGGAGAGAATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTCCTGACAGATTATTACAGGTCCCT >In-frame_ENST00000328142_ENST00000427144_TCGA-FG-A70Z_ATAD1_chr10_89574195_-_PAPSS2_chr10_89468953_length(amino acids)=669AA_start in transcript=253_stop in transcript=2262 MFVFLRLTFKMVHAEAFSRPLSRNEVVGLIFRLTIFGAVTYFTIKWMVDAIDPTRKQKVEAQKQENQQKSTNVVYQAHHVSRNKRGQVVG TRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAKLFADAGLVCITSFISPF AKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNI VPYTIIKDIHELFVPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLDDGVINMSIPIVLPVSAE DKTRLEGCSKFVLAHGGRRVAILRDAEFYEHRKEERCSRVWGTTCTKHPHIKMVMESGDWLVGGDLQVLEKIRWNDGLDQYRLTPLELKQ KCKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLDWRMKQHAAVLEEGVLDPKSTIVAIFPSPM LYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKAKKAMDFYDPARHNEFDF -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ATAD1-PAPSS2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ATAD1-PAPSS2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ATAD1-PAPSS2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ATAD1 | C4693933 | HYPEREKPLEXIA 4 | 3 | GENOMICS_ENGLAND;UNIPROT |
Hgene | ATAD1 | C1835614 | Hereditary Hyperexplexia | 1 | ORPHANET |
Tgene | PAPSS2 | C2748515 | Spondyloepimetaphyseal Dysplasia, Pakistani Type | 6 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |