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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RNF19A-F10 (FusionGDB2 ID:74460) |
Fusion Gene Summary for RNF19A-F10 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RNF19A-F10 | Fusion gene ID: 74460 | Hgene | Tgene | Gene symbol | RNF19A | F10 | Gene ID | 25897 | 83541 |
Gene name | ring finger protein 19A, RBR E3 ubiquitin protein ligase | family with sequence similarity 110 member A | |
Synonyms | RNF19 | C20orf55|F10|bA371L19.3 | |
Cytomap | 8q22.2 | 20p13 | |
Type of gene | protein-coding | protein-coding | |
Description | E3 ubiquitin-protein ligase RNF19Adouble ring-finger proteinprotein p38 interacting with transcription factor Sp1ring finger protein 19ring finger protein 19A, E3 ubiquitin protein ligasering-IBR-ring domain containing protein Dorfin | protein FAM110A | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | P00742 | |
Ensembl transtripts involved in fusion gene | ENST00000341084, ENST00000519449, ENST00000523255, | ENST00000409306, ENST00000375551, ENST00000375559, ENST00000483537, | |
Fusion gene scores | * DoF score | 20 X 21 X 10=4200 | 6 X 7 X 4=168 |
# samples | 34 | 7 | |
** MAII score | log2(34/4200*10)=-3.62678267641578 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RNF19A [Title/Abstract] AND F10 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RNF19A(101299729)-F10(113792771), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across RNF19A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across F10 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | ESCA | TCGA-VR-A8EX-01A | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
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Fusion Gene ORF analysis for RNF19A-F10 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000341084 | ENST00000409306 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
In-frame | ENST00000341084 | ENST00000375551 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
In-frame | ENST00000341084 | ENST00000375559 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
5CDS-intron | ENST00000341084 | ENST00000483537 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
In-frame | ENST00000519449 | ENST00000409306 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
In-frame | ENST00000519449 | ENST00000375551 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
In-frame | ENST00000519449 | ENST00000375559 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
5CDS-intron | ENST00000519449 | ENST00000483537 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
intron-3CDS | ENST00000523255 | ENST00000409306 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
intron-3CDS | ENST00000523255 | ENST00000375551 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
intron-3CDS | ENST00000523255 | ENST00000375559 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
intron-intron | ENST00000523255 | ENST00000483537 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000341084 | RNF19A | chr8 | 101299729 | - | ENST00000409306 | F10 | chr13 | 113792771 | + | 2405 | 1228 | 554 | 1336 | 260 |
ENST00000341084 | RNF19A | chr8 | 101299729 | - | ENST00000375551 | F10 | chr13 | 113792771 | + | 2464 | 1228 | 554 | 1336 | 260 |
ENST00000341084 | RNF19A | chr8 | 101299729 | - | ENST00000375559 | F10 | chr13 | 113792771 | + | 2476 | 1228 | 1222 | 2463 | 413 |
ENST00000519449 | RNF19A | chr8 | 101299729 | - | ENST00000409306 | F10 | chr13 | 113792771 | + | 2168 | 991 | 317 | 1099 | 260 |
ENST00000519449 | RNF19A | chr8 | 101299729 | - | ENST00000375551 | F10 | chr13 | 113792771 | + | 2227 | 991 | 317 | 1099 | 260 |
ENST00000519449 | RNF19A | chr8 | 101299729 | - | ENST00000375559 | F10 | chr13 | 113792771 | + | 2239 | 991 | 985 | 2226 | 413 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000341084 | ENST00000409306 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + | 0.016996032 | 0.983004 |
ENST00000341084 | ENST00000375551 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + | 0.017254181 | 0.98274577 |
ENST00000341084 | ENST00000375559 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + | 0.017228974 | 0.982771 |
ENST00000519449 | ENST00000409306 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + | 0.020122562 | 0.9798774 |
ENST00000519449 | ENST00000375551 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + | 0.020094931 | 0.9799051 |
ENST00000519449 | ENST00000375559 | RNF19A | chr8 | 101299729 | - | F10 | chr13 | 113792771 | + | 0.019733066 | 0.9802669 |
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Fusion Genomic Features for RNF19A-F10 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
RNF19A | chr8 | 101299728 | - | F10 | chr13 | 113792770 | + | 4.48E-05 | 0.9999552 |
RNF19A | chr8 | 101299728 | - | F10 | chr13 | 113792770 | + | 4.48E-05 | 0.9999552 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RNF19A-F10 |
Go to FGviewer for the breakpoints of chr8:101299729-chr13:113792771 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | F10 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 132_179 | 224.66666666666666 | 839.0 | Zinc finger | RING-type 1 |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 132_179 | 224.66666666666666 | 839.0 | Zinc finger | RING-type 1 |
Tgene | F10 | chr8:101299729 | chr13:113792771 | ENST00000375559 | 1 | 8 | 125_165 | 77.0 | 489.0 | Domain | EGF-like 2 | |
Tgene | F10 | chr8:101299729 | chr13:113792771 | ENST00000375559 | 1 | 8 | 235_467 | 77.0 | 489.0 | Domain | Peptidase S1 | |
Tgene | F10 | chr8:101299729 | chr13:113792771 | ENST00000375559 | 1 | 8 | 86_122 | 77.0 | 489.0 | Domain | EGF-like 1%3B calcium-binding | |
Tgene | F10 | chr8:101299729 | chr13:113792771 | ENST00000375559 | 1 | 8 | 183_203 | 77.0 | 489.0 | Region | Note=O-glycosylated at one site | |
Tgene | F10 | chr8:101299729 | chr13:113792771 | ENST00000375559 | 1 | 8 | 476_485 | 77.0 | 489.0 | Region | Note=O-glycosylated at one site |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 128_351 | 224.66666666666666 | 839.0 | Region | TRIAD supradomain |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 128_351 | 224.66666666666666 | 839.0 | Region | TRIAD supradomain |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 368_388 | 224.66666666666666 | 839.0 | Transmembrane | Helical |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 424_444 | 224.66666666666666 | 839.0 | Transmembrane | Helical |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 368_388 | 224.66666666666666 | 839.0 | Transmembrane | Helical |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 424_444 | 224.66666666666666 | 839.0 | Transmembrane | Helical |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 199_264 | 224.66666666666666 | 839.0 | Zinc finger | IBR-type |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 301_332 | 224.66666666666666 | 839.0 | Zinc finger | RING-type 2%3B atypical |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 199_264 | 224.66666666666666 | 839.0 | Zinc finger | IBR-type |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 301_332 | 224.66666666666666 | 839.0 | Zinc finger | RING-type 2%3B atypical |
Tgene | F10 | chr8:101299729 | chr13:113792771 | ENST00000375559 | 1 | 8 | 41_85 | 77.0 | 489.0 | Domain | Gla |
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Fusion Gene Sequence for RNF19A-F10 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000341084_ENST00000409306_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(transcript)=2405nt_BP=1228nt GGGGGCCGCAGTCGGGGCCACCCGGGTGCAGCGGGGCGGCTCCTGCGCGGGCGCGGAACGAACGTGCGCAAGGGAACAGCCGCGTCCAGA GCCGCCCGCAGCGGGCCCGGTGGGCGTGACGCCATGACGCACAGCACGCGGGCGGCGCGCTGGGGCGGGGCGGCCGGGGGCGGGAGGAAG AAGTGGGAGGAGGAGGAGGGGAAAGCGGGGGCTGCGGGAGGGGGAGGTGGTAGTTGCGGCGCTGGTTCCCGGGAGCAGCCGTCGAGCCAC AACTGCGGAGGAGGAGTTCGGGAAAGCGGCCGTCGGGACTCCTCCCCTCCGTCGTCTCCGCCCCGGTTGAGAGGCGCCTCGGCGCATCGG AGGGACCCTCCCCCGCGCTTCCTCAGGCTGCTGTCGCCGCTGCTGGGAGATGGGCCTACTCGCCCGCCACCCTGCGCTGCCGCCGCTCTG AGGAGTTAAAGAACATCCATGATAGCAGTCTTCTGTAAATCGAACTTTTCAAGAATTCTCTGAAGGAACCAAGTAGGATATTCTTACATC ATGACTTAATGTGAATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAGGGCTGTGTGTAAACACTGACCCTGTCTCAATTC TAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTCAGTCCTCTGCTTCATCTGTGAGCTTGCCTTCAG TCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTGTTTCGGAGGAAAAAAGATAACAAACGTAAATCAAGGGAGCTAAATG GCGGGGTGGATGGAATTGCAAGTATTGAAAGTATACATTCTGAAATGTGTACTGATAAGAACTCCATTTTCTCTACAAATACCTCTTCTG ACAATGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGTGCCTTTTGCGGCATTCTAAAGACAGATTTCCTG ATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAAGGATAGAAATCTCTGAAAGCAGAGTTAATATTAGTT GCCCAGAATGTACTGAACGGTTTAATCCCCATGATATTCGCTTGATATTAAGTGATGATGTCTTGATGGAAAAATACGAAGAATTTATGC TTAGACGGTGGCTTGTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTGGAATGAATTCTGGAATAAATACAAAGATGGCGA CCAGTGTGAGACCAGTCCTTGCCAGAACCAGGGCAAATGTAAAGACGGCCTCGGGGAATACACCTGCACCTGTTTAGAAGGATTCGAAGG CAAAAACTGTGAATTATTCACACGGAAGCTCTGCAGCCTGGACAACGGGGACTGTGACCAGTTCTGCCACGAGGAACAGAACTCTGTGGT GTGCTCCTGCGCCCGCGGGTACACCCTGGCTGACAACGGCAAGGCCTGCATTCCCACAGGGCCCTACCCCTGTGGGAAACAGACCCTGGA ACGCAGGAAGAGGTCAGTGGCCCAGGCCACCAGCAGCAGCGGGGAGGCCCCTGACAGCATCACATGGAAGCCATATGATGCAGCCGACCT GGACCCCACCGAGAACCCCTTCGACCTGCTTGACTTCAACCAGACGCAGCCTGAGAGGGGCGACAACAACCTCACCAGGATCGTGGGAGG CCAGGAATGCAAGGACGGGGAGTGTCCCTGGCAGGCCCTGCTCATCAATGAGGAAAACGAGGGTTTCTGTGGTGGAACCATTCTGAGCGA GTTCTACATCCTAACGGCAGCCCACTGTCTCTACCAAGCCAAGAGATTCAAGGTGAGGGGGACCGGAACACGGAGCAGGAGGAGGGCGGT GAGGCGGTGCACGAGGTGGAGGTGGTCATCAAGCACAACCGGTTCACAAAGGAGACCTATGACTTCGACATCGCCGTGCTCCGGCTCAAG ACCCCCATCACCTTCCGCATGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGACTGGGCCGAGTCCACGCTGATGACGCAGAAGACGGGG ATTGTGAGCGGCTTCGGGCGCACCCACGAGAAGGGCCGGCAGTCCACCAGGCTCAAGATGCTGGAGGTGCCCTACGTGGACCGCAACAGC TGCAAGCTGTCCAGCAGCTTCATCATCACCCAGAACATGTTCTGTGCCGGCTACGACACCAAGCAGGAGGATGCCTGCCAGGGGGACAGC GGGGGCCCGCACGTCACCCGCTTCAAGGACACCTACTTCGTGACAGGCATCGTCAGCTGGGGAGAGGGCTGTGCCCGTAAGGGGAAGTAC >In-frame_ENST00000341084_ENST00000409306_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(amino acids)=260AA_start in transcript=554_stop in transcript=1336 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAPKKRRISIGSLFRRKKDNKRKSRELNGGVDG IASIESIHSEMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT -------------------------------------------------------------- >In-frame_ENST00000341084_ENST00000375551_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(transcript)=2464nt_BP=1228nt GGGGGCCGCAGTCGGGGCCACCCGGGTGCAGCGGGGCGGCTCCTGCGCGGGCGCGGAACGAACGTGCGCAAGGGAACAGCCGCGTCCAGA GCCGCCCGCAGCGGGCCCGGTGGGCGTGACGCCATGACGCACAGCACGCGGGCGGCGCGCTGGGGCGGGGCGGCCGGGGGCGGGAGGAAG AAGTGGGAGGAGGAGGAGGGGAAAGCGGGGGCTGCGGGAGGGGGAGGTGGTAGTTGCGGCGCTGGTTCCCGGGAGCAGCCGTCGAGCCAC AACTGCGGAGGAGGAGTTCGGGAAAGCGGCCGTCGGGACTCCTCCCCTCCGTCGTCTCCGCCCCGGTTGAGAGGCGCCTCGGCGCATCGG AGGGACCCTCCCCCGCGCTTCCTCAGGCTGCTGTCGCCGCTGCTGGGAGATGGGCCTACTCGCCCGCCACCCTGCGCTGCCGCCGCTCTG AGGAGTTAAAGAACATCCATGATAGCAGTCTTCTGTAAATCGAACTTTTCAAGAATTCTCTGAAGGAACCAAGTAGGATATTCTTACATC ATGACTTAATGTGAATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAGGGCTGTGTGTAAACACTGACCCTGTCTCAATTC TAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTCAGTCCTCTGCTTCATCTGTGAGCTTGCCTTCAG TCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTGTTTCGGAGGAAAAAAGATAACAAACGTAAATCAAGGGAGCTAAATG GCGGGGTGGATGGAATTGCAAGTATTGAAAGTATACATTCTGAAATGTGTACTGATAAGAACTCCATTTTCTCTACAAATACCTCTTCTG ACAATGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGTGCCTTTTGCGGCATTCTAAAGACAGATTTCCTG ATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAAGGATAGAAATCTCTGAAAGCAGAGTTAATATTAGTT GCCCAGAATGTACTGAACGGTTTAATCCCCATGATATTCGCTTGATATTAAGTGATGATGTCTTGATGGAAAAATACGAAGAATTTATGC TTAGACGGTGGCTTGTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTGGAATGAATTCTGGAATAAATACAAAGATGGCGA CCAGTGTGAGACCAGTCCTTGCCAGAACCAGGGCAAATGTAAAGACGGCCTCGGGGAATACACCTGCACCTGTTTAGAAGGATTCGAAGG CAAAAACTGTGAATTATTCACACGGAAGCTCTGCAGCCTGGACAACGGGGACTGTGACCAGTTCTGCCACGAGGAACAGAACTCTGTGGT GTGCTCCTGCGCCCGCGGGTACACCCTGGCTGACAACGGCAAGGCCTGCATTCCCACAGGGCCCTACCCCTGTGGGAAACAGACCCTGGA ACGCAGGAAGAGGTCAGTGGCCCAGGCCACCAGCAGCAGCGGGGAGGCCCCTGACAGCATCACATGGAAGCCATATGATGCAGCCGACCT GGACCCCACCGAGAACCCCTTCGACCTGCTTGACTTCAACCAGACGCAGCCTGAGAGGGGCGACAACAACCTCACCAGGATCGTGGGAGG CCAGGAATGCAAGGACGGGGAGTGTCCCTGGCAGGCCCTGCTCATCAATGAGGAAAACGAGGGTTTCTGTGGTGGAACCATTCTGAGCGA GTTCTACATCCTAACGGCAGCCCACTGTCTCTACCAAGCCAAGAGATTCAAGGGGACCGGAACACGGAGCAGGAGGAGGGCGGTGAGGCG GTGCACGAGGTGGAGGTGGTCATCAAGCACAACCGGTTCACAAAGGAGACCTATGACTTCGACATCGCCGTGCTCCGGCTCAAGACCCCC ATCACCTTCCGCATGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGACTGGGCCGAGTCCACGCTGATGACGCAGAAGACGGGGATTGTG AGCGGCTTCGGGCGCACCCACGAGAAGGGCCGGCAGTCCACCAGGCTCAAGATGCTGGAGGTGCCCTACGTGGACCGCAACAGCTGCAAG CTGTCCAGCAGCTTCATCATCACCCAGAACATGTTCTGTGCCGGCTACGACACCAAGCAGGAGGATGCCTGCCAGGGGGACAGCGGGGGC CCGCACGTCACCCGCTTCAAGGACACCTACTTCGTGACAGGCATCGTCAGCTGGGGAGAGGGCTGTGCCCGTAAGGGGAAGTACGGGATC TACACCAAGGTCACCGCCTTCCTCAAGTGGATCGACAGGTCCATGAAAACCAGGGGCTTGCCCAAGGCCAAGAGCCATGCCCCGGAGGTC >In-frame_ENST00000341084_ENST00000375551_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(amino acids)=260AA_start in transcript=554_stop in transcript=1336 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAPKKRRISIGSLFRRKKDNKRKSRELNGGVDG IASIESIHSEMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT -------------------------------------------------------------- >In-frame_ENST00000341084_ENST00000375559_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(transcript)=2476nt_BP=1228nt GGGGGCCGCAGTCGGGGCCACCCGGGTGCAGCGGGGCGGCTCCTGCGCGGGCGCGGAACGAACGTGCGCAAGGGAACAGCCGCGTCCAGA GCCGCCCGCAGCGGGCCCGGTGGGCGTGACGCCATGACGCACAGCACGCGGGCGGCGCGCTGGGGCGGGGCGGCCGGGGGCGGGAGGAAG AAGTGGGAGGAGGAGGAGGGGAAAGCGGGGGCTGCGGGAGGGGGAGGTGGTAGTTGCGGCGCTGGTTCCCGGGAGCAGCCGTCGAGCCAC AACTGCGGAGGAGGAGTTCGGGAAAGCGGCCGTCGGGACTCCTCCCCTCCGTCGTCTCCGCCCCGGTTGAGAGGCGCCTCGGCGCATCGG AGGGACCCTCCCCCGCGCTTCCTCAGGCTGCTGTCGCCGCTGCTGGGAGATGGGCCTACTCGCCCGCCACCCTGCGCTGCCGCCGCTCTG AGGAGTTAAAGAACATCCATGATAGCAGTCTTCTGTAAATCGAACTTTTCAAGAATTCTCTGAAGGAACCAAGTAGGATATTCTTACATC ATGACTTAATGTGAATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAGGGCTGTGTGTAAACACTGACCCTGTCTCAATTC TAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTCAGTCCTCTGCTTCATCTGTGAGCTTGCCTTCAG TCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTGTTTCGGAGGAAAAAAGATAACAAACGTAAATCAAGGGAGCTAAATG GCGGGGTGGATGGAATTGCAAGTATTGAAAGTATACATTCTGAAATGTGTACTGATAAGAACTCCATTTTCTCTACAAATACCTCTTCTG ACAATGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGTGCCTTTTGCGGCATTCTAAAGACAGATTTCCTG ATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAAGGATAGAAATCTCTGAAAGCAGAGTTAATATTAGTT GCCCAGAATGTACTGAACGGTTTAATCCCCATGATATTCGCTTGATATTAAGTGATGATGTCTTGATGGAAAAATACGAAGAATTTATGC TTAGACGGTGGCTTGTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTGGAATGAATTCTGGAATAAATACAAAGATGGCGA CCAGTGTGAGACCAGTCCTTGCCAGAACCAGGGCAAATGTAAAGACGGCCTCGGGGAATACACCTGCACCTGTTTAGAAGGATTCGAAGG CAAAAACTGTGAATTATTCACACGGAAGCTCTGCAGCCTGGACAACGGGGACTGTGACCAGTTCTGCCACGAGGAACAGAACTCTGTGGT GTGCTCCTGCGCCCGCGGGTACACCCTGGCTGACAACGGCAAGGCCTGCATTCCCACAGGGCCCTACCCCTGTGGGAAACAGACCCTGGA ACGCAGGAAGAGGTCAGTGGCCCAGGCCACCAGCAGCAGCGGGGAGGCCCCTGACAGCATCACATGGAAGCCATATGATGCAGCCGACCT GGACCCCACCGAGAACCCCTTCGACCTGCTTGACTTCAACCAGACGCAGCCTGAGAGGGGCGACAACAACCTCACCAGGATCGTGGGAGG CCAGGAATGCAAGGACGGGGAGTGTCCCTGGCAGGCCCTGCTCATCAATGAGGAAAACGAGGGTTTCTGTGGTGGAACCATTCTGAGCGA GTTCTACATCCTAACGGCAGCCCACTGTCTCTACCAAGCCAAGAGATTCAAGGTGAGGGTAGGGGACCGGAACACGGAGCAGGAGGAGGG CGGTGAGGCGGTGCACGAGGTGGAGGTGGTCATCAAGCACAACCGGTTCACAAAGGAGACCTATGACTTCGACATCGCCGTGCTCCGGCT CAAGACCCCCATCACCTTCCGCATGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGACTGGGCCGAGTCCACGCTGATGACGCAGAAGAC GGGGATTGTGAGCGGCTTCGGGCGCACCCACGAGAAGGGCCGGCAGTCCACCAGGCTCAAGATGCTGGAGGTGCCCTACGTGGACCGCAA CAGCTGCAAGCTGTCCAGCAGCTTCATCATCACCCAGAACATGTTCTGTGCCGGCTACGACACCAAGCAGGAGGATGCCTGCCAGGGGGA CAGCGGGGGCCCGCACGTCACCCGCTTCAAGGACACCTACTTCGTGACAGGCATCGTCAGCTGGGGAGAGGGCTGTGCCCGTAAGGGGAA GTACGGGATCTACACCAAGGTCACCGCCTTCCTCAAGTGGATCGACAGGTCCATGAAAACCAGGGGCTTGCCCAAGGCCAAGAGCCATGC >In-frame_ENST00000341084_ENST00000375559_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(amino acids)=413AA_start in transcript=1222_stop in transcript=2463 MWNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTRIVGGQECKDGECPWQALLINE ENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPE RDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTG -------------------------------------------------------------- >In-frame_ENST00000519449_ENST00000409306_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(transcript)=2168nt_BP=991nt ATAGTCACCAGAAGCTGGAAGAGTCAAAGGACACATTCTCCCCTCAAGCCCCAGTGGGAGCACGGCCCAGCTGGATTTTGGACTTCTGGC CTCCAGAACTAGACAGGGCCTCACTGTGTCACCCAGGGTGGAATACAGTGGTGTGATCATAGCTCACTGCAGCCTGGAATTCCTGGGCTC AAGCAACCCTGCCACCTCAGCCTTCCAAGTAGCTAGGACTACAGAACATCCATGATAGCAGTCTTCTGTAAATCGAACTTTTCAAGAATT CTCTGAAGGAACCAAGTAGGATATTCTTACATCATGACTTAATGTGAATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAG GGCTGTGTGTAAACACTGACCCTGTCTCAATTCTAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTC AGTCCTCTGCTTCATCTGTGAGCTTGCCTTCAGTCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTGTTTCGGAGGAAAA AAGATAACAAACGTAAATCAAGGGAGCTAAATGGCGGGGTGGATGGAATTGCAAGTATTGAAAGTATACATTCTGAAATGTGTACTGATA AGAACTCCATTTTCTCTACAAATACCTCTTCTGACAATGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGT GCCTTTTGCGGCATTCTAAAGACAGATTTCCTGATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAAGGA TAGAAATCTCTGAAAGCAGAGTTAATATTAGTTGCCCAGAATGTACTGAACGGTTTAATCCCCATGATATTCGCTTGATATTAAGTGATG ATGTCTTGATGGAAAAATACGAAGAATTTATGCTTAGACGGTGGCTTGTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTG GAATGAATTCTGGAATAAATACAAAGATGGCGACCAGTGTGAGACCAGTCCTTGCCAGAACCAGGGCAAATGTAAAGACGGCCTCGGGGA ATACACCTGCACCTGTTTAGAAGGATTCGAAGGCAAAAACTGTGAATTATTCACACGGAAGCTCTGCAGCCTGGACAACGGGGACTGTGA CCAGTTCTGCCACGAGGAACAGAACTCTGTGGTGTGCTCCTGCGCCCGCGGGTACACCCTGGCTGACAACGGCAAGGCCTGCATTCCCAC AGGGCCCTACCCCTGTGGGAAACAGACCCTGGAACGCAGGAAGAGGTCAGTGGCCCAGGCCACCAGCAGCAGCGGGGAGGCCCCTGACAG CATCACATGGAAGCCATATGATGCAGCCGACCTGGACCCCACCGAGAACCCCTTCGACCTGCTTGACTTCAACCAGACGCAGCCTGAGAG GGGCGACAACAACCTCACCAGGATCGTGGGAGGCCAGGAATGCAAGGACGGGGAGTGTCCCTGGCAGGCCCTGCTCATCAATGAGGAAAA CGAGGGTTTCTGTGGTGGAACCATTCTGAGCGAGTTCTACATCCTAACGGCAGCCCACTGTCTCTACCAAGCCAAGAGATTCAAGGTGAG GGGGACCGGAACACGGAGCAGGAGGAGGGCGGTGAGGCGGTGCACGAGGTGGAGGTGGTCATCAAGCACAACCGGTTCACAAAGGAGACC TATGACTTCGACATCGCCGTGCTCCGGCTCAAGACCCCCATCACCTTCCGCATGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGACTGG GCCGAGTCCACGCTGATGACGCAGAAGACGGGGATTGTGAGCGGCTTCGGGCGCACCCACGAGAAGGGCCGGCAGTCCACCAGGCTCAAG ATGCTGGAGGTGCCCTACGTGGACCGCAACAGCTGCAAGCTGTCCAGCAGCTTCATCATCACCCAGAACATGTTCTGTGCCGGCTACGAC ACCAAGCAGGAGGATGCCTGCCAGGGGGACAGCGGGGGCCCGCACGTCACCCGCTTCAAGGACACCTACTTCGTGACAGGCATCGTCAGC TGGGGAGAGGGCTGTGCCCGTAAGGGGAAGTACGGGATCTACACCAAGGTCACCGCCTTCCTCAAGTGGATCGACAGGTCCATGAAAACC >In-frame_ENST00000519449_ENST00000409306_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(amino acids)=260AA_start in transcript=317_stop in transcript=1099 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAPKKRRISIGSLFRRKKDNKRKSRELNGGVDG IASIESIHSEMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT -------------------------------------------------------------- >In-frame_ENST00000519449_ENST00000375551_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(transcript)=2227nt_BP=991nt ATAGTCACCAGAAGCTGGAAGAGTCAAAGGACACATTCTCCCCTCAAGCCCCAGTGGGAGCACGGCCCAGCTGGATTTTGGACTTCTGGC CTCCAGAACTAGACAGGGCCTCACTGTGTCACCCAGGGTGGAATACAGTGGTGTGATCATAGCTCACTGCAGCCTGGAATTCCTGGGCTC AAGCAACCCTGCCACCTCAGCCTTCCAAGTAGCTAGGACTACAGAACATCCATGATAGCAGTCTTCTGTAAATCGAACTTTTCAAGAATT CTCTGAAGGAACCAAGTAGGATATTCTTACATCATGACTTAATGTGAATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAG GGCTGTGTGTAAACACTGACCCTGTCTCAATTCTAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTC AGTCCTCTGCTTCATCTGTGAGCTTGCCTTCAGTCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTGTTTCGGAGGAAAA AAGATAACAAACGTAAATCAAGGGAGCTAAATGGCGGGGTGGATGGAATTGCAAGTATTGAAAGTATACATTCTGAAATGTGTACTGATA AGAACTCCATTTTCTCTACAAATACCTCTTCTGACAATGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGT GCCTTTTGCGGCATTCTAAAGACAGATTTCCTGATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAAGGA TAGAAATCTCTGAAAGCAGAGTTAATATTAGTTGCCCAGAATGTACTGAACGGTTTAATCCCCATGATATTCGCTTGATATTAAGTGATG ATGTCTTGATGGAAAAATACGAAGAATTTATGCTTAGACGGTGGCTTGTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTG GAATGAATTCTGGAATAAATACAAAGATGGCGACCAGTGTGAGACCAGTCCTTGCCAGAACCAGGGCAAATGTAAAGACGGCCTCGGGGA ATACACCTGCACCTGTTTAGAAGGATTCGAAGGCAAAAACTGTGAATTATTCACACGGAAGCTCTGCAGCCTGGACAACGGGGACTGTGA CCAGTTCTGCCACGAGGAACAGAACTCTGTGGTGTGCTCCTGCGCCCGCGGGTACACCCTGGCTGACAACGGCAAGGCCTGCATTCCCAC AGGGCCCTACCCCTGTGGGAAACAGACCCTGGAACGCAGGAAGAGGTCAGTGGCCCAGGCCACCAGCAGCAGCGGGGAGGCCCCTGACAG CATCACATGGAAGCCATATGATGCAGCCGACCTGGACCCCACCGAGAACCCCTTCGACCTGCTTGACTTCAACCAGACGCAGCCTGAGAG GGGCGACAACAACCTCACCAGGATCGTGGGAGGCCAGGAATGCAAGGACGGGGAGTGTCCCTGGCAGGCCCTGCTCATCAATGAGGAAAA CGAGGGTTTCTGTGGTGGAACCATTCTGAGCGAGTTCTACATCCTAACGGCAGCCCACTGTCTCTACCAAGCCAAGAGATTCAAGGGGAC CGGAACACGGAGCAGGAGGAGGGCGGTGAGGCGGTGCACGAGGTGGAGGTGGTCATCAAGCACAACCGGTTCACAAAGGAGACCTATGAC TTCGACATCGCCGTGCTCCGGCTCAAGACCCCCATCACCTTCCGCATGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGACTGGGCCGAG TCCACGCTGATGACGCAGAAGACGGGGATTGTGAGCGGCTTCGGGCGCACCCACGAGAAGGGCCGGCAGTCCACCAGGCTCAAGATGCTG GAGGTGCCCTACGTGGACCGCAACAGCTGCAAGCTGTCCAGCAGCTTCATCATCACCCAGAACATGTTCTGTGCCGGCTACGACACCAAG CAGGAGGATGCCTGCCAGGGGGACAGCGGGGGCCCGCACGTCACCCGCTTCAAGGACACCTACTTCGTGACAGGCATCGTCAGCTGGGGA GAGGGCTGTGCCCGTAAGGGGAAGTACGGGATCTACACCAAGGTCACCGCCTTCCTCAAGTGGATCGACAGGTCCATGAAAACCAGGGGC >In-frame_ENST00000519449_ENST00000375551_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(amino acids)=260AA_start in transcript=317_stop in transcript=1099 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAPKKRRISIGSLFRRKKDNKRKSRELNGGVDG IASIESIHSEMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT -------------------------------------------------------------- >In-frame_ENST00000519449_ENST00000375559_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(transcript)=2239nt_BP=991nt ATAGTCACCAGAAGCTGGAAGAGTCAAAGGACACATTCTCCCCTCAAGCCCCAGTGGGAGCACGGCCCAGCTGGATTTTGGACTTCTGGC CTCCAGAACTAGACAGGGCCTCACTGTGTCACCCAGGGTGGAATACAGTGGTGTGATCATAGCTCACTGCAGCCTGGAATTCCTGGGCTC AAGCAACCCTGCCACCTCAGCCTTCCAAGTAGCTAGGACTACAGAACATCCATGATAGCAGTCTTCTGTAAATCGAACTTTTCAAGAATT CTCTGAAGGAACCAAGTAGGATATTCTTACATCATGACTTAATGTGAATGCAAGAACAAGAAATAGGTTTTATCTCTAAATATAATGAAG GGCTGTGTGTAAACACTGACCCTGTCTCAATTCTAACAAGCATTTTAGACATGAGTTTACATCGGCAAATGGGTTCAGATCGAGATCTTC AGTCCTCTGCTTCATCTGTGAGCTTGCCTTCAGTCAAAAAGGCACCCAAAAAAAGAAGAATTTCAATAGGCTCCCTGTTTCGGAGGAAAA AAGATAACAAACGTAAATCAAGGGAGCTAAATGGCGGGGTGGATGGAATTGCAAGTATTGAAAGTATACATTCTGAAATGTGTACTGATA AGAACTCCATTTTCTCTACAAATACCTCTTCTGACAATGGATTAACTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCTTTGT GCCTTTTGCGGCATTCTAAAGACAGATTTCCTGATATAATGACTTGTCATCACAGATCTTGTGTGGATTGCTTACGACAATATTTAAGGA TAGAAATCTCTGAAAGCAGAGTTAATATTAGTTGCCCAGAATGTACTGAACGGTTTAATCCCCATGATATTCGCTTGATATTAAGTGATG ATGTCTTGATGGAAAAATACGAAGAATTTATGCTTAGACGGTGGCTTGTTGCAGATCCTGATTGTAGGTGGTGTCCAGCTCCAGACTGTG GAATGAATTCTGGAATAAATACAAAGATGGCGACCAGTGTGAGACCAGTCCTTGCCAGAACCAGGGCAAATGTAAAGACGGCCTCGGGGA ATACACCTGCACCTGTTTAGAAGGATTCGAAGGCAAAAACTGTGAATTATTCACACGGAAGCTCTGCAGCCTGGACAACGGGGACTGTGA CCAGTTCTGCCACGAGGAACAGAACTCTGTGGTGTGCTCCTGCGCCCGCGGGTACACCCTGGCTGACAACGGCAAGGCCTGCATTCCCAC AGGGCCCTACCCCTGTGGGAAACAGACCCTGGAACGCAGGAAGAGGTCAGTGGCCCAGGCCACCAGCAGCAGCGGGGAGGCCCCTGACAG CATCACATGGAAGCCATATGATGCAGCCGACCTGGACCCCACCGAGAACCCCTTCGACCTGCTTGACTTCAACCAGACGCAGCCTGAGAG GGGCGACAACAACCTCACCAGGATCGTGGGAGGCCAGGAATGCAAGGACGGGGAGTGTCCCTGGCAGGCCCTGCTCATCAATGAGGAAAA CGAGGGTTTCTGTGGTGGAACCATTCTGAGCGAGTTCTACATCCTAACGGCAGCCCACTGTCTCTACCAAGCCAAGAGATTCAAGGTGAG GGTAGGGGACCGGAACACGGAGCAGGAGGAGGGCGGTGAGGCGGTGCACGAGGTGGAGGTGGTCATCAAGCACAACCGGTTCACAAAGGA GACCTATGACTTCGACATCGCCGTGCTCCGGCTCAAGACCCCCATCACCTTCCGCATGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGA CTGGGCCGAGTCCACGCTGATGACGCAGAAGACGGGGATTGTGAGCGGCTTCGGGCGCACCCACGAGAAGGGCCGGCAGTCCACCAGGCT CAAGATGCTGGAGGTGCCCTACGTGGACCGCAACAGCTGCAAGCTGTCCAGCAGCTTCATCATCACCCAGAACATGTTCTGTGCCGGCTA CGACACCAAGCAGGAGGATGCCTGCCAGGGGGACAGCGGGGGCCCGCACGTCACCCGCTTCAAGGACACCTACTTCGTGACAGGCATCGT CAGCTGGGGAGAGGGCTGTGCCCGTAAGGGGAAGTACGGGATCTACACCAAGGTCACCGCCTTCCTCAAGTGGATCGACAGGTCCATGAA >In-frame_ENST00000519449_ENST00000375559_TCGA-VR-A8EX-01A_RNF19A_chr8_101299729_-_F10_chr13_113792771_length(amino acids)=413AA_start in transcript=985_stop in transcript=2226 MWNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTRIVGGQECKDGECPWQALLINE ENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPE RDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RNF19A-F10 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000341084 | - | 2 | 10 | 660_838 | 224.66666666666666 | 839.0 | CASR |
Hgene | RNF19A | chr8:101299729 | chr13:113792771 | ENST00000519449 | - | 3 | 11 | 660_838 | 224.66666666666666 | 839.0 | CASR |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RNF19A-F10 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | F10 | P00742 | DB00036 | Coagulation factor VIIa Recombinant Human | Biotech | Approved | |
Tgene | F10 | P00742 | DB01225 | Enoxaparin | Inhibitor | Small molecule | Approved |
Tgene | F10 | P00742 | DB06228 | Rivaroxaban | Antagonist | Small molecule | Approved |
Tgene | F10 | P00742 | DB06605 | Apixaban | Inhibitor | Small molecule | Approved |
Tgene | F10 | P00742 | DB09075 | Edoxaban | Inhibitor | Small molecule | Approved |
Tgene | F10 | P00742 | DB09141 | Protamine sulfate | Biotech | Approved | |
Tgene | F10 | P00742 | DB09332 | Kappadione | Agonist | Small molecule | Approved |
Tgene | F10 | P00742 | DB13149 | Protein S human | Antagonist | Biotech | Approved |
Tgene | F10 | P00742 | DB13152 | Coagulation Factor IX Human | Activator | Biotech | Approved |
Tgene | F10 | P00742 | DB13192 | Antihemophilic factor human | Activator | Biotech | Approved |
Tgene | F10 | P00742 | DB13884 | Albutrepenonacog alfa | Activator | Biotech | Approved |
Tgene | F10 | P00742 | DB13999 | Moroctocog alfa | Activator | Biotech | Approved |
Tgene | F10 | P00742 | DB14738 | Turoctocog alfa pegol | Activator | Biotech | Approved |
Tgene | F10 | P00742 | DB00025 | Antihemophilic factor, human recombinant | Activator | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB00100 | Coagulation Factor IX (Recombinant) | Activator | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB00569 | Fondaparinux | Inhibitor | Small molecule | Approved|Investigational |
Tgene | F10 | P00742 | DB01109 | Heparin | Inhibitor | Small molecule | Approved|Investigational |
Tgene | F10 | P00742 | DB09109 | Turoctocog alfa | Activator | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB09258 | Bemiparin | Antagonist | Small molecule | Approved|Investigational |
Tgene | F10 | P00742 | DB11166 | Antithrombin Alfa | Inhibitor | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB12364 | Betrixaban | Inhibitor | Small molecule | Approved|Investigational |
Tgene | F10 | P00742 | DB13150 | Coagulation factor VII human | Activator | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB13151 | Anti-inhibitor coagulant complex | Agonist | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB13923 | Emicizumab | Activator | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB13933 | Nonacog beta pegol | Agonist | Biotech | Approved|Investigational |
Tgene | F10 | P00742 | DB13998 | Lonoctocog alfa | Activator | Biotech | Approved|Investigational |
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Related Diseases for RNF19A-F10 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | F10 | C0015519 | Factor X Deficiency | 32 | CLINGEN;CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Tgene | F10 | C0272327 | Hereditary factor X deficiency disease | 11 | CLINGEN |
Tgene | F10 | C0005779 | Blood Coagulation Disorders | 1 | CTD_human |
Tgene | F10 | C0040053 | Thrombosis | 1 | CTD_human |
Tgene | F10 | C0087086 | Thrombus | 1 | CTD_human |