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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ATF6-TENM3 (FusionGDB2 ID:7536) |
Fusion Gene Summary for ATF6-TENM3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ATF6-TENM3 | Fusion gene ID: 7536 | Hgene | Tgene | Gene symbol | ATF6 | TENM3 | Gene ID | 22926 | 55714 |
Gene name | activating transcription factor 6 | teneurin transmembrane protein 3 | |
Synonyms | ACHM7|ATF6A | MCOPCB9|MCOPS15|ODZ3|TEN3|TNM3|Ten-m3|ten-3 | |
Cytomap | 1q23.3 | 4q34.3-q35.1 | |
Type of gene | protein-coding | protein-coding | |
Description | cyclic AMP-dependent transcription factor ATF-6 alphacAMP-dependent transcription factor ATF-6 alpha | teneurin-3ODZ3-like proteinodz, odd Oz/ten-m homolog 3protein Odd Oz/ten-m homolog 3tenascin-M3testicular tissue protein Li 195 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000367942, ENST00000476437, | ENST00000511685, ENST00000406950, ENST00000502950, | |
Fusion gene scores | * DoF score | 12 X 10 X 8=960 | 12 X 12 X 2=288 |
# samples | 12 | 13 | |
** MAII score | log2(12/960*10)=-3 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/288*10)=-1.14755718841386 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ATF6 [Title/Abstract] AND TENM3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ATF6(161762117)-TENM3(183522077), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ATF6 | GO:0043065 | positive regulation of apoptotic process | 14752510 |
Hgene | ATF6 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 14973138 |
Hgene | ATF6 | GO:1903893 | positive regulation of ATF6-mediated unfolded protein response | 9837962 |
Hgene | ATF6 | GO:1990440 | positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress | 11163209|11256944|16469704 |
Fusion gene breakpoints across ATF6 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TENM3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SARC | TCGA-VT-A80J-01A | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
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Fusion Gene ORF analysis for ATF6-TENM3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000367942 | ENST00000511685 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
In-frame | ENST00000367942 | ENST00000406950 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
5CDS-intron | ENST00000367942 | ENST00000502950 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
intron-3CDS | ENST00000476437 | ENST00000511685 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
intron-3CDS | ENST00000476437 | ENST00000406950 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
intron-intron | ENST00000476437 | ENST00000502950 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000367942 | ATF6 | chr1 | 161762117 | + | ENST00000511685 | TENM3 | chr4 | 183522077 | + | 11017 | 755 | 10 | 8343 | 2777 |
ENST00000367942 | ATF6 | chr1 | 161762117 | + | ENST00000406950 | TENM3 | chr4 | 183522077 | + | 8672 | 755 | 10 | 8343 | 2777 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000367942 | ENST00000511685 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + | 0.000178922 | 0.9998211 |
ENST00000367942 | ENST00000406950 | ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522077 | + | 0.000420207 | 0.99957985 |
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Fusion Genomic Features for ATF6-TENM3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522076 | + | 0.000158002 | 0.9998419 |
ATF6 | chr1 | 161762117 | + | TENM3 | chr4 | 183522076 | + | 0.000158002 | 0.9998419 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ATF6-TENM3 |
Go to FGviewer for the breakpoints of chr1:161762117-chr4:183522077 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 124_127 | 229.33333333333334 | 671.0 | Compositional bias | Note=Poly-Ser |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 1_150 | 229.33333333333334 | 671.0 | Region | Transcription activation |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 514_545 | 170.33333333333334 | 2700.0 | Domain | EGF-like 1 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 546_576 | 170.33333333333334 | 2700.0 | Domain | EGF-like 2 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 578_610 | 170.33333333333334 | 2700.0 | Domain | EGF-like 3 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 611_642 | 170.33333333333334 | 2700.0 | Domain | EGF-like 4 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 644_677 | 170.33333333333334 | 2700.0 | Domain | EGF-like 5 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 678_709 | 170.33333333333334 | 2700.0 | Domain | EGF-like 6 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 710_739 | 170.33333333333334 | 2700.0 | Domain | EGF-like 7 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 740_774 | 170.33333333333334 | 2700.0 | Domain | EGF-like 8 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 514_545 | 170.33333333333334 | 2700.0 | Domain | EGF-like 1 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 546_576 | 170.33333333333334 | 2700.0 | Domain | EGF-like 2 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 578_610 | 170.33333333333334 | 2700.0 | Domain | EGF-like 3 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 611_642 | 170.33333333333334 | 2700.0 | Domain | EGF-like 4 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 644_677 | 170.33333333333334 | 2700.0 | Domain | EGF-like 5 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 678_709 | 170.33333333333334 | 2700.0 | Domain | EGF-like 6 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 710_739 | 170.33333333333334 | 2700.0 | Domain | EGF-like 7 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 740_774 | 170.33333333333334 | 2700.0 | Domain | EGF-like 8 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1200_1244 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 1 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1270_1314 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 2 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1331_1371 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 3 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1402_1429 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 4 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1458_1501 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 5 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1511_1530 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 1 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1547_1567 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 2 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1610_1629 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 3 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1630_1652 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 4 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1823_1842 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 5 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1864_1882 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 6 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1883_1903 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 7 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1910_1927 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 8 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1928_1949 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 9 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1950_1967 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 10 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1970_1990 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 11 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1993_2013 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 12 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2021_2040 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 13 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2046_2063 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 14 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2064_2090 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 15 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2092_2105 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 16 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2106_2129 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 17 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2132_2152 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 18 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2153_2173 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 19 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2175_2195 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 20 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2207_2227 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 21 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2229_2249 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 22 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 2275_2316 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 23 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1200_1244 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 1 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1270_1314 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 2 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1331_1371 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 3 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1402_1429 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 4 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1458_1501 | 170.33333333333334 | 2700.0 | Repeat | Note=NHL 5 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1511_1530 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 1 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1547_1567 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 2 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1610_1629 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 3 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1630_1652 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 4 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1823_1842 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 5 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1864_1882 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 6 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1883_1903 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 7 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1910_1927 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 8 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1928_1949 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 9 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1950_1967 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 10 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1970_1990 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 11 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1993_2013 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 12 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2021_2040 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 13 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2046_2063 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 14 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2064_2090 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 15 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2092_2105 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 16 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2106_2129 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 17 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2132_2152 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 18 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2153_2173 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 19 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2175_2195 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 20 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2207_2227 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 21 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2229_2249 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 22 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 2275_2316 | 170.33333333333334 | 2700.0 | Repeat | Note=YD 23 | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 332_2699 | 170.33333333333334 | 2700.0 | Topological domain | Extracellular | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 332_2699 | 170.33333333333334 | 2700.0 | Topological domain | Extracellular | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 311_331 | 170.33333333333334 | 2700.0 | Transmembrane | Helical | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 311_331 | 170.33333333333334 | 2700.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 325_328 | 229.33333333333334 | 671.0 | Compositional bias | Note=Poly-Lys |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 463_466 | 229.33333333333334 | 671.0 | Compositional bias | Note=Poly-Pro |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 306_369 | 229.33333333333334 | 671.0 | Domain | bZIP |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 308_339 | 229.33333333333334 | 671.0 | Region | Note=Basic motif |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 348_355 | 229.33333333333334 | 671.0 | Region | Note=Leucine-zipper |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 1_377 | 229.33333333333334 | 671.0 | Topological domain | Cytoplasmic |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 399_670 | 229.33333333333334 | 671.0 | Topological domain | Lumenal |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 378_398 | 229.33333333333334 | 671.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1_309 | 170.33333333333334 | 2700.0 | Domain | Teneurin N-terminal | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1_309 | 170.33333333333334 | 2700.0 | Domain | Teneurin N-terminal | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000406950 | 1 | 27 | 1_310 | 170.33333333333334 | 2700.0 | Topological domain | Cytoplasmic | |
Tgene | TENM3 | chr1:161762117 | chr4:183522077 | ENST00000511685 | 2 | 28 | 1_310 | 170.33333333333334 | 2700.0 | Topological domain | Cytoplasmic |
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Fusion Gene Sequence for ATF6-TENM3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000367942_ENST00000511685_TCGA-VT-A80J-01A_ATF6_chr1_161762117_+_TENM3_chr4_183522077_length(transcript)=11017nt_BP=755nt TTTTGTCCGCCTGCCGCCGCCGTCCCAGATATTAATCACGGAGTTCCAGGGAGAAGGAACTTGTGAAATGGGGGAGCCGGCTGGGGTTGC CGGCACCATGGAGTCACCTTTTAGCCCGGGACTCTTTCACAGGCTGGATGAAGATTGGGATTCTGCTCTCTTTGCTGAACTCGGTTATTT CACAGACACTGATGAGCTGCAATTGGAAGCAGCAAATGAGACGTATGAAAACAATTTTGATAATCTTGATTTTGATTTGGATTTGATGCC TTGGGAGTCAGACATTTGGGACATCAACAACCAAATCTGTACAGTTAAAGATATTAAGGCAGAACCTCAGCCACTTTCTCCAGCCTCCTC AAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTATTCTTCAACTCAGCATGTTCCTGAGGAGTTGGATTTGTCTTCTAGTTCTCA GATGTCTCCCCTTTCCTTATATGGTGAAAACTCTAATAGTCTCTCTTCAGCGGAGCCACTGAAGGAAGATAAGCCTGTCACTGGTCCTAG GAACAAGACTGAAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGAATTCAAAACCTTCAATTCAGCCCAAGCCTTTATTGCTTCCAGC AGCACCCAAGACTCAAACAAACTCCAGTGTTCCAGCAAAAACCATCATTATTCAGACAGTACCAACGCTTATGCCATTGGCAAAGCAGCA ACCAATTATCAGTTTACAACCTGCACCCACTAAAGAGCAACCTGCAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCA TAAGCAGCACTCTGCACAGCATCATCCATCCATCACTTCTCTCAACAGAAACTCCCTGACCAATAGAAGGAACCAGAGTCCGGCCCCGCC GGCTGCTTTGCCCGCCGAGCTGCAAACCACACCCGAGTCCGTCCAGCTGCAGGACAGCTGGGTCCTTGGCAGTAATGTACCACTGGAAAG CAGGCATTTCCTATTCAAAACAGGAACAGGTACAACGCCACTGTTCAGTACTGCAACCCCAGGATACACAATGGCATCTGGCTCTGTTTA TTCACCACCTACTCGGCCACTACCTAGAAACACCCTATCAAGAAGTGCTTTTAAATTCAAGAAGTCTTCAAAGTACTGTAGCTGGAAATG CACTGCACTGTGTGCCGTAGGGGTCTCGGTGCTCCTGGCAATACTCCTGTCTTATTTTATAGCAATGCATCTCTTTGGCCTCAACTGGCA GCTACAGCAGACTGAAAATGACACATTTGAGAATGGAAAAGTGAATTCTGATACCATGCCAACAAACACTGTGTCATTACCTTCTGGAGA CAATGGAAAATTAGGTGGATTTACGCAAGAAAATAACACCATAGATTCCGGAGAACTTGATATTGGCCGAAGAGCAATTCAAGAGATTCC TCCCGGGATCTTCTGGAGATCACAGCTCTTCATTGATCAGCCACAGTTTCTTAAATTCAATATCTCTCTTCAGAAGGATGCATTGATTGG AGTATATGGCCGGAAAGGCTTACCGCCTTCCCATACTCAGTATGACTTCGTGGAGCTCCTGGATGGCAGCAGGCTGATTGCCAGAGAGCA GCGGAGCCTGCTTGAGACGGAGAGAGCCGGGCGGCAGGCGAGATCCGTCAGCCTTCATGAGGCCGGCTTTATCCAGTACTTGGATTCTGG AATCTGGCATCTGGCTTTTTATAATGATGGGAAAAATGCAGAGCAGGTGTCTTTTAATACCATTGTTATAGAGTCTGTGGTGGAATGTCC CCGAAATTGCCATGGAAATGGAGAATGCGTTTCTGGAACTTGCCATTGTTTTCCAGGATTTCTGGGTCCGGATTGTTCAAGAGCCGCCTG TCCAGTGTTATGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTGTTTCAGCGGCTGGAAGGGCACCGAGTGTGATGTGCCGAC TACCCAGTGTATTGACCCACAGTGTGGGGGTCGTGGGATTTGTATCATGGGCTCTTGTGCTTGCAACTCAGGATACAAAGGAGAAAGTTG TGAAGAAGCTGACTGTATAGACCCTGGGTGTTCTAATCATGGTGTGTGTATCCACGGGGAATGTCACTGCAGTCCAGGATGGGGAGGTAG CAATTGTGAAATACTGAAGACCATGTGTCCAGACCAGTGCTCCGGCCACGGAACGTATCTTCAAGAAAGTGGCTCCTGCACGTGTGACCC TAACTGGACTGGCCCAGACTGCTCAAACGAAATATGTTCTGTGGACTGTGGCTCACACGGCGTTTGCATGGGGGGGACGTGTCGCTGTGA AGAAGGCTGGACGGGCCCAGCCTGTAATCAGAGAGCCTGCCACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAAGTGTGAATG CAGCCAGGGCTGGAATGGAGAGCACTGCACTATCGAGGGTTGTCCTGGTCTGTGCAACAGCAATGGAAGATGTACCCTGGACCAAAATGG CTGGCATTGTGTGTGCCAGCCTGGATGGAGAGGAGCAGGCTGTGACGTAGCCATGGAGACTCTTTGCACAGATAGCAAGGACAATGAAGG AGATGGACTCATTGACTGCATGGATCCCGATTGCTGCCTACAGAGTTCCTGCCAGAATCAGCCCTATTGTCGGGGACTGCCGGATCCTCA GGACATCATTAGCCAAAGCCTTCAATCGCCTTCTCAGCAAGCTGCCAAATCCTTTTATGATCGAATCAGTTTCCTTATAGGATCTGATAG CACCCATGTTATACCTGGAGAAAGTCCTTTCAATAAGAGCCTTGCATCTGTCATCAGAGGCCAAGTACTGACTGCTGATGGAACTCCACT TATTGGAGTAAATGTCTCGTTTTTCCATTACCCAGAATATGGATATACTATTACCCGCCAGGACGGAATGTTTGACTTGGTGGCAAATGG TGGGGCCTCTCTAACTTTGGTATTTGAACGATCCCCATTCCTCACTCAGTATCATACTGTGTGGATTCCATGGAATGTCTTTTATGTGAT GGATACCCTAGTCATGAAGAAAGAAGAGAATGATATTCCCAGCTGTGATCTGAGTGGATTCGTGAGGCCAAATCCCATCATTGTGTCATC ACCTTTATCCACCTTTTTCAGATCTTCTCCTGAAGACAGTCCCATCATTCCCGAAACACAGGTACTCCACGAGGAAACTACAATTCCAGG AACAGATTTGAAACTCTCCTACTTGAGTTCCAGAGCTGCAGGGTATAAGTCAGTTCTCAAGATCACCATGACCCAGTCTATTATTCCATT TAATTTAATGAAGGTTCATCTTATGGTAGCTGTAGTAGGAAGACTCTTCCAAAAGTGGTTTCCTGCCTCACCAAACTTGGCCTATACTTT CATATGGGATAAAACAGATGCATATAATCAGAAAGTCTATGGTCTATCTGAAGCTGTTGTGTCAGTTGGATATGAGTATGAGTCGTGTTT GGACCTGACTCTGTGGGAAAAGAGGACTGCCATTCTGCAGGGCTATGAATTGGATGCGTCCAACATGGGTGGCTGGACATTAGATAAACA TCACGTGCTGGATGTACAGAACGGTATACTGTACAAGGGAAACGGGGAAAACCAGTTCATCTCCCAGCAGCCTCCAGTCGTGAGTAGCAT CATGGGCAATGGGCGAAGGCGCAGCATTTCCTGCCCCAGTTGCAATGGTCAAGCTGATGGTAACAAGTTACTGGCCCCAGTGGCGCTAGC TTGTGGGATCGATGGCAGTCTGTACGTAGGCGATTTCAACTATGTGCGGCGGATATTCCCTTCTGGAAATGTAACAAGTGTCTTAGAACT AAGCAGCAACCCAGCTCATAGATACTACCTTGCAACGGATCCAGTCACGGGAGATCTGTACGTTTCTGACACAAACACCCGCAGAATTTA TCGCCCAAAGTCACTTACGGGGGCAAAAGACTTGACTAAAAATGCAGAAGTCGTCGCAGGGACAGGGGAGCAATGCCTTCCGTTTGACGA GGCGAGATGTGGGGATGGAGGGAAGGCCGTGGAAGCCACACTCATGAGTCCCAAAGGAATGGCAGTTGATAAGAATGGATTAATCTACTT TGTTGATGGAACCATGATTAGGAAAGTTGACCAAAATGGAATCATATCAACTCTTCTGGGCTCTAACGATTTGACTTCAGCCAGACCTTT AACTTGTGACACCAGCATGCACATCAGCCAGGTACGTCTGGAATGGCCCACTGACCTAGCCATTAACCCTATGGATAACTCCATTTATGT CCTGGATAATAATGTAGTTTTACAGATCACTGAAAATCGTCAAGTTCGCATTGCTGCTGGACGGCCCATGCACTGTCAGGTTCCCGGAGT GGAATATCCTGTGGGGAAGCACGCGGTGCAGACAACACTGGAATCAGCCACTGCCATTGCTGTGTCCTACAGTGGGGTCCTGTACATTAC TGAAACTGATGAGAAGAAAATTAACCGGATAAGGCAGGTCACAACAGATGGAGAAATCTCCTTAGTGGCCGGAATACCTTCAGAGTGTGA CTGCAAAAATGATGCCAACTGTGACTGTTACCAGAGTGGAGATGGCTACGCCAAGGATGCCAAACTCAGTGCCCCATCCTCCCTGGCTGC TTCTCCAGATGGTACACTGTATATTGCAGATCTAGGGAATATCCGGATCCGGGCTGTGTCAAAGAATAAGCCTTTACTTAACTCTATGAA CTTCTATGAAGTTGCGTCTCCAACTGATCAAGAACTCTACATCTTTGACATCAATGGTACTCACCAATATACTGTAAGTTTAGTCACTGG TGATTACCTTTACAATTTTAGCTACAGCAATGACAATGATATTACTGCTGTGACAGACAGCAATGGCAACACCCTTAGAATTAGACGGGA CCCAAATCGCATGCCAGTTCGAGTGGTGTCTCCTGATAACCAAGTGATATGGTTGACAATAGGAACAAATGGATGTTTGAAAAGCATGAC TGCTCAAGGACTGGAATTAGTTTTGTTTACTTACCATGGCAATAGTGGCCTTTTAGCCACTAAAAGTGATGAAACTGGATGGACAACGTT TTTTGACTATGACAGTGAAGGTCGTCTGACAAATGTTACGTTTCCAACTGGAGTGGTCACAAACCTGCATGGGGACATGGACAAGGCTAT CACAGTGGACATTGAGTCATCTAGCCGAGAAGAAGATGTCAGCATCACTTCAAATCTGTCCTCGATCGATTCTTTCTACACCATGGTTCA AGATCAGTTAAGAAACAGCTACCAGATTGGTTATGACGGCTCCCTCAGAATTATCTACGCCAGTGGCCTGGACTCACACTACCAAACAGA GCCGCACGTTCTGGCTGGCACCGCTAATCCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAACGGTCAAAACTTGGTGGAATG GAGATTCCGAAAAGAGCAAGCCCAAGGGAAAGTCAATGTCTTTGGCCGCAAGCTCAGGGTTAATGGCAGAAACCTCCTTTCAGTTGACTT TGATCGAACAACAAAGACAGAAAAGATCTATGACGACCACCGTAAATTTCTACTGAGGATCGCCTACGACACGTCTGGGCACCCGACTCT CTGGCTGCCAAGCAGCAAGCTGATGGCCGTCAATGTCACCTATTCATCCACAGGTCAAATTGCCAGCATCCAGCGAGGCACCACTAGCGA GAAAGTAGATTATGACGGACAGGGGAGGATCGTGTCTCGGGTCTTTGCTGATGGTAAAACATGGAGTTACACATATTTAGAAAAGTCCAT GGTTCTTCTGCTTCATAGCCAGCGGCAGTACATCTTCGAATACGATATGTGGGACCGCCTGTCTGCCATCACCATGCCCAGTGTGGCTCG CCACACCATGCAGACCATCCGATCCATTGGCTACTACCGCAACATATACAACCCCCCGGAAAGCAACGCCTCCATCATCACGGACTACAA CGAGGAAGGGCTGCTTCTACAAACAGCTTTCTTGGGTACAAGTCGGAGGGTCTTATTCAAATACAGAAGGCAGACTAGGCTCTCAGAAAT TTTATATGATAGCACAAGAGTCAGTTTTACCTATGATGAAACAGCAGGAGTCCTAAAGACAGTAAACCTCCAGAGTGATGGTTTTATTTG CACCATTAGATACAGGCAAATTGGTCCCCTGATTGACAGGCAGATTTTCCGCTTTAGTGAAGATGGGATGGTAAATGCAAGATTTGACTA TAGCTATGACAACAGCTTTCGAGTGACCAGCATGCAGGGTGTGATCAATGAAACGCCACTGCCTATTGATCTGTATCAGTTTGATGACAT TTCTGGCAAAGTTGAGCAGTTTGGAAAGTTTGGAGTTATATATTATGATATTAACCAGATCATTTCTACAGCTGTAATGACCTATACGAA GCACTTTGATGCTCATGGCCGTATCAAGGAGATTCAATATGAGATATTCAGGTCGCTCATGTACTGGATTACAATTCAGTATGATAACAT GGGTCGGGTAACCAAGAGAGAGATTAAAATAGGGCCCTTTGCCAACACCACCAAATATGCTTATGAATATGATGTTGATGGACAGCTCCA AACAGTTTACCTCAATGAAAAGATAATGTGGCGGTACAACTACGATCTGAATGGAAACCTCCATTTACTGAACCCAAGTAACAGTGCGCG TCTGACACCCCTTCGCTATGACCTGCGAGACAGAATCACTCGACTGGGTGATGTTCAATATCGGTTGGATGAAGATGGTTTCCTACGTCA AAGGGGCACGGAAATCTTTGAATATAGCTCCAAGGGGCTTCTAACTCGAGTTTACAGTAAAGGCAGTGGCTGGACAGTGATCTACCGTTA TGACGGCCTGGGAAGGCGTGTTTCTAGCAAAACCAGTCTAGGACAGCACCTGCAGTTTTTTTATGCTGACTTAACTTATCCCACTAGGAT TACTCATGTCTACAACCATTCGAGTTCAGAAATTACCTCCCTGTATTATGATCTCCAAGGACATCTTTTTGCCATGGAAATCAGCAGTGG GGATGAATTCTATATTGCATCGGATAACACAGGGACACCACTGGCTGTGTTCAGTAGCAATGGGCTTATGCTGAAACAGATTCAGTACAC TGCATATGGGGAAATCTATTTTGACTCTAATATTGACTTTCAACTGGTAATTGGATTTCATGGTGGCCTGTATGACCCACTCACCAAATT AATCCACTTTGGAGAAAGAGATTATGACATTTTGGCAGGACGGTGGACAACACCTGACATAGAAATCTGGAAAAGAATTGGGAAGGACCC AGCTCCTTTTAACTTGTACATGTTTAGGAATAACAACCCTGCAAGCAAAATCCATGACGTGAAAGATTACATCACAGATGTTAACAGCTG GCTGGTGACATTTGGTTTCCATCTGCACAATGCTATTCCTGGATTCCCTGTTCCCAAATTTGATTTAACAGAACCTTCTTACGAACTTGT GAAGAGTCAGCAGTGGGATGATATACCGCCCATCTTCGGAGTCCAGCAGCAAGTGGCGCGGCAGGCCAAGGCCTTCCTGTCGCTGGGGAA GATGGCCGAGGTGCAGGTGAGCCGGCGCCGGGCCGGCGGCGCGCAGTCCTGGCTGTGGTTCGCCACGGTCAAGTCGCTGATCGGCAAGGG CGTCATGCTGGCCGTCAGCCAGGGCCGCGTGCAGACCAACGTGCTCAACATCGCCAACGAGGACTGCATCAAGGTGGCGGCCGTGCTCAA CAACGCCTTCTACCTGGAGAACCTGCACTTCACCATCGAGGGCAAGGACACGCACTACTTCATCAAGACCACCACGCCCGAGAGCGACCT GGGCACGCTGCGGTTGACCAGCGGCCGCAAGGCGCTGGAGAACGGCATCAACGTGACGGTGTCGCAGTCCACCACGGTGGTGAACGGCAG GACGCGCAGGTTCGCGGACGTGGAGATGCAGTTCGGCGCGCTGGCGCTGCACGTGCGCTACGGCATGACCCTGGACGAGGAGAAGGCGCG CATCCTGGAGCAGGCGCGGCAGCGCGCGCTCGCCCGGGCCTGGGCGCGCGAGCAGCAGCGCGTGCGCGACGGCGAGGAGGGCGCGCGCCT CTGGACGGAGGGCGAGAAGCGGCAGCTGCTGAGCGCCGGCAAGGTGCAGGGCTACGACGGGTACTACGTACTCTCGGTGGAGCAGTACCC CGAGCTGGCCGACAGCGCCAACAACATCCAGTTCCTGCGGCAGAGCGAGATCGGCAGGAGGTAACGCCCGGGCCGCGCCCGCCGAGCCGC TCACGCCCTGCCCACATTGTCCTGTGGCACAACCCGAGTGGGACTCTCCAACGCCCAAGAGCCTTCCTCCCGGGGGAATGAGACTGCTGT TACGACCCACACCCACACCGCGAAAACAAGGACCGCTTTTTTCCGAATGACCTTAAAGGTGATCGGCTTTAACGAATATGTTTACATATG CATAGCGCTGCACTCAGTCGGACTGAACGTAGCCAGAGGAAAAAAAAATCATCAAGGACAAAGGCCTCGACCTGTTGCGCTGGGCCGTCT GTTCCTTCTAGGCACTGTATTTAACTAACTTTAAAAAAGAAAAAAAAATGTGTACAGTGTTTCCAAATAGTCCCGAATTGTCGACCTTTG CTTACAAGAAGTAGTCTGTCTGCATAGGATGTGATAGCTATCTCTGTTCATTTTACAATGTGGGGCAAAGTTACTGTTTCTAGACAACCC AACTGCTTTCCCTGTGCAGCTTTGTAGAAGGACATTGGCACAGTGACTTCTGCGGCGGGGATTTATTAATGGATTTTACAATGCTAACGT GGTTTCCCTTCGGGGAAAAAACTGGCAACTAGAATCCTTGTCACTGATAAGCAAAGGAAATCCTGATTTTTTTGTAAATTATGTGAGACA AGTTGTTTATGGATTTTTATATGAATTACAATTTACTGTACATCAAATCTTAGTCTCAGAGGAGTTAATTTATGTAAAGTGTTTAAAAAT TTATACTTAAAAATAAAATGATAAAAACGTGAACTGTGTGATTTTTTTAAAAGGATTGCACCTTTTGTTATCTGTTATAGCTGTACAGTA TGAATTATTATATTGTAGAGATATAACAACTTATGCCTATAATGTCCAGAAGTGTTAATATTTTTGTATTAGGTTGAAAAAATGTGCAAG CTTCTATCACTAGATGGATAGGACCGTGCAATTCTAGGTGGGTGGCGAATCAGAGAGCTCCTTTCTCTTCCCTCTCTCACGCATCAGGCC AGTGTCCTCAGCATTGTCAACTGAGAGGCACAGTAGACAACTAGGGCTGGTGGAATGTAAGGGAAGAAGATTGAAAAAACGGGAGGAAGG GTTCTCTGGCCCTCTCTCAACCTTGCAAGTCAATGGGGAGTTGTTGATATAATTAACCCCGAGGTTTTTACTGTTACTGTTCCAAAGCTC TGTCTCTTGATGGAGGAGAGACCACATCAGATGCTGGGGAAATAGGAGGAGGAAAGGTTCTGATGTAGTCGTGATCCTAAACACGTGTCT TAAGATCTAGGAAAGACAGCAGAAACCGAGCAGTGGTGGGTGAGCCAGATGGAGCCGGTCAGGGTTACTCTAAGCCCACATGACCAAACC ATCTTGGGGGGCTGGTTTGAATGACAGCCTCTGCTCTGTCTCGGGGAAGCCGGGGGTGGCAGATCCAGCTGGAAGTGAACTGACAGCCGC GCCCTCCTGCACACATGCATGCACGCGTGTGGGAACGAGCCCAGCCGCCATCTGCACTTCCGTGTCGGCTCAGCTCTGACAAATCTCTTT CCTGAGCACTAAATTCAGCCACGAAAATATTTTTAGAAGATATTTCTCAGTTCATCGAGCTATAGTACACACTGTTTTCCTCTATGTATA ATGGTGATAAAATATAGCAAGTGAACATGTCGTAAATATAAAGGTTCAAGTGATGTATTGAAAATAATTTTCTAACTGCTTTGTATGTAT CACATACTCTAAATTGCACAGTAGGCGTGTTTATTAAACAGATGATTGGCTGGGAAAGTTTCAAAATAGCTACTGAATTTACAGTATCAG TGCTATTACTGTCTTTGTGTATTTGGTAGAGCATACCGAAGTAATTAATCTTCTAATGAATGCTGATGATATTTTATTAGAATGAAAGCA CAGATTAGCATTAATATTTTTTATTCTGGAAATCCTTTGGCAAGTATTATGAAGCCCAAATTTAGAAAACTATGAGATTTCAAACCACAT AAACATGATTCTGTTTTCCATTTTATTTTTTAACTGTTAGGTATTTGCAGTTCTGTTCCGTGGAACTTCTGCAGGCCTGTATTTAGCATG CTGTAAGTACTTTTGGGTGAAATAGGCTCTGAGTCTAAATTCTCAGACATGTTTCTGATGTATTACCATGAAAAGCTTGTGCCACATGAC AGAAGTGAGATCATAGTCTTAACCTCTTCTTGACGTGGACTGGTCTTCACTCGGGCACCGATAAATAACAGATTTGGAGTATCTCCTGGT GCTTATTTTAGATGATGAAGTCAAATCAACCCAATTAGTGTCCTGTTAGTAGGTATAATGAGCCTATTTCTTTCTAAAAAGACTTGTGAT CTGGACATGCTTTTACAAGAAATAGTGACCTTGGGGAATATGTAAACAAAAGACCTTTTTCTAAGAGTTGGGAGGGGGTGGGGGACTGTA TAATGAAAAGAATTAGCTTACAAAAAAGAAATTGATATTCAAAGTATTTTAGGCAAAGCCAGTCAAAATGCTTTCATGATATTTTGAGAT GTAAATTTTGTCTGATTTGTATTGTTCTTTTCATTTGCCTTCTTAACTTTATATGTGACCTGAATTTTCCATAACTTGATGACTATAGAT >In-frame_ENST00000367942_ENST00000511685_TCGA-VT-A80J-01A_ATF6_chr1_161762117_+_TENM3_chr4_183522077_length(amino acids)=2777AA_start in transcript=10_stop in transcript=8343 MPPPSQILITEFQGEGTCEMGEPAGVAGTMESPFSPGLFHRLDEDWDSALFAELGYFTDTDELQLEAANETYENNFDNLDFDLDLMPWES DIWDINNQICTVKDIKAEPQPLSPASSSYSVSSPRSVDSYSSTQHVPEELDLSSSSQMSPLSLYGENSNSLSSAEPLKEDKPVTGPRNKT ENGLTPKKKIQVNSKPSIQPKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTKEQPASNQGQSTLQPLPPSHKQH SAQHHPSITSLNRNSLTNRRNQSPAPPAALPAELQTTPESVQLQDSWVLGSNVPLESRHFLFKTGTGTTPLFSTATPGYTMASGSVYSPP TRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVGVSVLLAILLSYFIAMHLFGLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGK LGGFTQENNTIDSGELDIGRRAIQEIPPGIFWRSQLFIDQPQFLKFNISLQKDALIGVYGRKGLPPSHTQYDFVELLDGSRLIAREQRSL LETERAGRQARSVSLHEAGFIQYLDSGIWHLAFYNDGKNAEQVSFNTIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAACPVL CSGNGQYSKGRCLCFSGWKGTECDVPTTQCIDPQCGGRGICIMGSCACNSGYKGESCEEADCIDPGCSNHGVCIHGECHCSPGWGGSNCE ILKTMCPDQCSGHGTYLQESGSCTCDPNWTGPDCSNEICSVDCGSHGVCMGGTCRCEEGWTGPACNQRACHPRCAEHGTCKDGKCECSQG WNGEHCTIEGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDPDCCLQSSCQNQPYCRGLPDPQDII SQSLQSPSQQAAKSFYDRISFLIGSDSTHVIPGESPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTITRQDGMFDLVANGGAS LTLVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSCDLSGFVRPNPIIVSSPLSTFFRSSPEDSPIIPETQVLHEETTIPGTDL KLSYLSSRAAGYKSVLKITMTQSIIPFNLMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQKVYGLSEAVVSVGYEYESCLDLT LWEKRTAILQGYELDASNMGGWTLDKHHVLDVQNGILYKGNGENQFISQQPPVVSSIMGNGRRRSISCPSCNGQADGNKLLAPVALACGI DGSLYVGDFNYVRRIFPSGNVTSVLELSSNPAHRYYLATDPVTGDLYVSDTNTRRIYRPKSLTGAKDLTKNAEVVAGTGEQCLPFDEARC GDGGKAVEATLMSPKGMAVDKNGLIYFVDGTMIRKVDQNGIISTLLGSNDLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLDN NVVLQITENRQVRIAAGRPMHCQVPGVEYPVGKHAVQTTLESATAIAVSYSGVLYITETDEKKINRIRQVTTDGEISLVAGIPSECDCKN DANCDCYQSGDGYAKDAKLSAPSSLAASPDGTLYIADLGNIRIRAVSKNKPLLNSMNFYEVASPTDQELYIFDINGTHQYTVSLVTGDYL YNFSYSNDNDITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNGCLKSMTAQGLELVLFTYHGNSGLLATKSDETGWTTFFDY DSEGRLTNVTFPTGVVTNLHGDMDKAITVDIESSSREEDVSITSNLSSIDSFYTMVQDQLRNSYQIGYDGSLRIIYASGLDSHYQTEPHV LAGTANPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKLRVNGRNLLSVDFDRTTKTEKIYDDHRKFLLRIAYDTSGHPTLWLP SSKLMAVNVTYSSTGQIASIQRGTTSEKVDYDGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEYDMWDRLSAITMPSVARHTM QTIRSIGYYRNIYNPPESNASIITDYNEEGLLLQTAFLGTSRRVLFKYRRQTRLSEILYDSTRVSFTYDETAGVLKTVNLQSDGFICTIR YRQIGPLIDRQIFRFSEDGMVNARFDYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFGKFGVIYYDINQIISTAVMTYTKHFD AHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKREIKIGPFANTTKYAYEYDVDGQLQTVYLNEKIMWRYNYDLNGNLHLLNPSNSARLTP LRYDLRDRITRLGDVQYRLDEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDGLGRRVSSKTSLGQHLQFFYADLTYPTRITHV YNHSSSEITSLYYDLQGHLFAMEISSGDEFYIASDNTGTPLAVFSSNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLTKLIHF GERDYDILAGRWTTPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITDVNSWLVTFGFHLHNAIPGFPVPKFDLTEPSYELVKSQ QWDDIPPIFGVQQQVARQAKAFLSLGKMAEVQVSRRRAGGAQSWLWFATVKSLIGKGVMLAVSQGRVQTNVLNIANEDCIKVAAVLNNAF YLENLHFTIEGKDTHYFIKTTTPESDLGTLRLTSGRKALENGINVTVSQSTTVVNGRTRRFADVEMQFGALALHVRYGMTLDEEKARILE -------------------------------------------------------------- >In-frame_ENST00000367942_ENST00000406950_TCGA-VT-A80J-01A_ATF6_chr1_161762117_+_TENM3_chr4_183522077_length(transcript)=8672nt_BP=755nt TTTTGTCCGCCTGCCGCCGCCGTCCCAGATATTAATCACGGAGTTCCAGGGAGAAGGAACTTGTGAAATGGGGGAGCCGGCTGGGGTTGC CGGCACCATGGAGTCACCTTTTAGCCCGGGACTCTTTCACAGGCTGGATGAAGATTGGGATTCTGCTCTCTTTGCTGAACTCGGTTATTT CACAGACACTGATGAGCTGCAATTGGAAGCAGCAAATGAGACGTATGAAAACAATTTTGATAATCTTGATTTTGATTTGGATTTGATGCC TTGGGAGTCAGACATTTGGGACATCAACAACCAAATCTGTACAGTTAAAGATATTAAGGCAGAACCTCAGCCACTTTCTCCAGCCTCCTC AAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTATTCTTCAACTCAGCATGTTCCTGAGGAGTTGGATTTGTCTTCTAGTTCTCA GATGTCTCCCCTTTCCTTATATGGTGAAAACTCTAATAGTCTCTCTTCAGCGGAGCCACTGAAGGAAGATAAGCCTGTCACTGGTCCTAG GAACAAGACTGAAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGAATTCAAAACCTTCAATTCAGCCCAAGCCTTTATTGCTTCCAGC AGCACCCAAGACTCAAACAAACTCCAGTGTTCCAGCAAAAACCATCATTATTCAGACAGTACCAACGCTTATGCCATTGGCAAAGCAGCA ACCAATTATCAGTTTACAACCTGCACCCACTAAAGAGCAACCTGCAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCA TAAGCAGCACTCTGCACAGCATCATCCATCCATCACTTCTCTCAACAGAAACTCCCTGACCAATAGAAGGAACCAGAGTCCGGCCCCGCC GGCTGCTTTGCCCGCCGAGCTGCAAACCACACCCGAGTCCGTCCAGCTGCAGGACAGCTGGGTCCTTGGCAGTAATGTACCACTGGAAAG CAGGCATTTCCTATTCAAAACAGGAACAGGTACAACGCCACTGTTCAGTACTGCAACCCCAGGATACACAATGGCATCTGGCTCTGTTTA TTCACCACCTACTCGGCCACTACCTAGAAACACCCTATCAAGAAGTGCTTTTAAATTCAAGAAGTCTTCAAAGTACTGTAGCTGGAAATG CACTGCACTGTGTGCCGTAGGGGTCTCGGTGCTCCTGGCAATACTCCTGTCTTATTTTATAGCAATGCATCTCTTTGGCCTCAACTGGCA GCTACAGCAGACTGAAAATGACACATTTGAGAATGGAAAAGTGAATTCTGATACCATGCCAACAAACACTGTGTCATTACCTTCTGGAGA CAATGGAAAATTAGGTGGATTTACGCAAGAAAATAACACCATAGATTCCGGAGAACTTGATATTGGCCGAAGAGCAATTCAAGAGATTCC TCCCGGGATCTTCTGGAGATCACAGCTCTTCATTGATCAGCCACAGTTTCTTAAATTCAATATCTCTCTTCAGAAGGATGCATTGATTGG AGTATATGGCCGGAAAGGCTTACCGCCTTCCCATACTCAGTATGACTTCGTGGAGCTCCTGGATGGCAGCAGGCTGATTGCCAGAGAGCA GCGGAGCCTGCTTGAGACGGAGAGAGCCGGGCGGCAGGCGAGATCCGTCAGCCTTCATGAGGCCGGCTTTATCCAGTACTTGGATTCTGG AATCTGGCATCTGGCTTTTTATAATGATGGGAAAAATGCAGAGCAGGTGTCTTTTAATACCATTGTTATAGAGTCTGTGGTGGAATGTCC CCGAAATTGCCATGGAAATGGAGAATGCGTTTCTGGAACTTGCCATTGTTTTCCAGGATTTCTGGGTCCGGATTGTTCAAGAGCCGCCTG TCCAGTGTTATGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTGTTTCAGCGGCTGGAAGGGCACCGAGTGTGATGTGCCGAC TACCCAGTGTATTGACCCACAGTGTGGGGGTCGTGGGATTTGTATCATGGGCTCTTGTGCTTGCAACTCAGGATACAAAGGAGAAAGTTG TGAAGAAGCTGACTGTATAGACCCTGGGTGTTCTAATCATGGTGTGTGTATCCACGGGGAATGTCACTGCAGTCCAGGATGGGGAGGTAG CAATTGTGAAATACTGAAGACCATGTGTCCAGACCAGTGCTCCGGCCACGGAACGTATCTTCAAGAAAGTGGCTCCTGCACGTGTGACCC TAACTGGACTGGCCCAGACTGCTCAAACGAAATATGTTCTGTGGACTGTGGCTCACACGGCGTTTGCATGGGGGGGACGTGTCGCTGTGA AGAAGGCTGGACGGGCCCAGCCTGTAATCAGAGAGCCTGCCACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAAGTGTGAATG CAGCCAGGGCTGGAATGGAGAGCACTGCACTATCGAGGGTTGTCCTGGTCTGTGCAACAGCAATGGAAGATGTACCCTGGACCAAAATGG CTGGCATTGTGTGTGCCAGCCTGGATGGAGAGGAGCAGGCTGTGACGTAGCCATGGAGACTCTTTGCACAGATAGCAAGGACAATGAAGG AGATGGACTCATTGACTGCATGGATCCCGATTGCTGCCTACAGAGTTCCTGCCAGAATCAGCCCTATTGTCGGGGACTGCCGGATCCTCA GGACATCATTAGCCAAAGCCTTCAATCGCCTTCTCAGCAAGCTGCCAAATCCTTTTATGATCGAATCAGTTTCCTTATAGGATCTGATAG CACCCATGTTATACCTGGAGAAAGTCCTTTCAATAAGAGCCTTGCATCTGTCATCAGAGGCCAAGTACTGACTGCTGATGGAACTCCACT TATTGGAGTAAATGTCTCGTTTTTCCATTACCCAGAATATGGATATACTATTACCCGCCAGGACGGAATGTTTGACTTGGTGGCAAATGG TGGGGCCTCTCTAACTTTGGTATTTGAACGATCCCCATTCCTCACTCAGTATCATACTGTGTGGATTCCATGGAATGTCTTTTATGTGAT GGATACCCTAGTCATGAAGAAAGAAGAGAATGATATTCCCAGCTGTGATCTGAGTGGATTCGTGAGGCCAAATCCCATCATTGTGTCATC ACCTTTATCCACCTTTTTCAGATCTTCTCCTGAAGACAGTCCCATCATTCCCGAAACACAGGTACTCCACGAGGAAACTACAATTCCAGG AACAGATTTGAAACTCTCCTACTTGAGTTCCAGAGCTGCAGGGTATAAGTCAGTTCTCAAGATCACCATGACCCAGTCTATTATTCCATT TAATTTAATGAAGGTTCATCTTATGGTAGCTGTAGTAGGAAGACTCTTCCAAAAGTGGTTTCCTGCCTCACCAAACTTGGCCTATACTTT CATATGGGATAAAACAGATGCATATAATCAGAAAGTCTATGGTCTATCTGAAGCTGTTGTGTCAGTTGGATATGAGTATGAGTCGTGTTT GGACCTGACTCTGTGGGAAAAGAGGACTGCCATTCTGCAGGGCTATGAATTGGATGCGTCCAACATGGGTGGCTGGACATTAGATAAACA TCACGTGCTGGATGTACAGAACGGTATACTGTACAAGGGAAACGGGGAAAACCAGTTCATCTCCCAGCAGCCTCCAGTCGTGAGTAGCAT CATGGGCAATGGGCGAAGGCGCAGCATTTCCTGCCCCAGTTGCAATGGTCAAGCTGATGGTAACAAGTTACTGGCCCCAGTGGCGCTAGC TTGTGGGATCGATGGCAGTCTGTACGTAGGCGATTTCAACTATGTGCGGCGGATATTCCCTTCTGGAAATGTAACAAGTGTCTTAGAACT AAGCAGCAACCCAGCTCATAGATACTACCTTGCAACGGATCCAGTCACGGGAGATCTGTACGTTTCTGACACAAACACCCGCAGAATTTA TCGCCCAAAGTCACTTACGGGGGCAAAAGACTTGACTAAAAATGCAGAAGTCGTCGCAGGGACAGGGGAGCAATGCCTTCCGTTTGACGA GGCGAGATGTGGGGATGGAGGGAAGGCCGTGGAAGCCACACTCATGAGTCCCAAAGGAATGGCAGTTGATAAGAATGGATTAATCTACTT TGTTGATGGAACCATGATTAGGAAAGTTGACCAAAATGGAATCATATCAACTCTTCTGGGCTCTAACGATTTGACTTCAGCCAGACCTTT AACTTGTGACACCAGCATGCACATCAGCCAGGTACGTCTGGAATGGCCCACTGACCTAGCCATTAACCCTATGGATAACTCCATTTATGT CCTGGATAATAATGTAGTTTTACAGATCACTGAAAATCGTCAAGTTCGCATTGCTGCTGGACGGCCCATGCACTGTCAGGTTCCCGGAGT GGAATATCCTGTGGGGAAGCACGCGGTGCAGACAACACTGGAATCAGCCACTGCCATTGCTGTGTCCTACAGTGGGGTCCTGTACATTAC TGAAACTGATGAGAAGAAAATTAACCGGATAAGGCAGGTCACAACAGATGGAGAAATCTCCTTAGTGGCCGGAATACCTTCAGAGTGTGA CTGCAAAAATGATGCCAACTGTGACTGTTACCAGAGTGGAGATGGCTACGCCAAGGATGCCAAACTCAGTGCCCCATCCTCCCTGGCTGC TTCTCCAGATGGTACACTGTATATTGCAGATCTAGGGAATATCCGGATCCGGGCTGTGTCAAAGAATAAGCCTTTACTTAACTCTATGAA CTTCTATGAAGTTGCGTCTCCAACTGATCAAGAACTCTACATCTTTGACATCAATGGTACTCACCAATATACTGTAAGTTTAGTCACTGG TGATTACCTTTACAATTTTAGCTACAGCAATGACAATGATATTACTGCTGTGACAGACAGCAATGGCAACACCCTTAGAATTAGACGGGA CCCAAATCGCATGCCAGTTCGAGTGGTGTCTCCTGATAACCAAGTGATATGGTTGACAATAGGAACAAATGGATGTTTGAAAAGCATGAC TGCTCAAGGACTGGAATTAGTTTTGTTTACTTACCATGGCAATAGTGGCCTTTTAGCCACTAAAAGTGATGAAACTGGATGGACAACGTT TTTTGACTATGACAGTGAAGGTCGTCTGACAAATGTTACGTTTCCAACTGGAGTGGTCACAAACCTGCATGGGGACATGGACAAGGCTAT CACAGTGGACATTGAGTCATCTAGCCGAGAAGAAGATGTCAGCATCACTTCAAATCTGTCCTCGATCGATTCTTTCTACACCATGGTTCA AGATCAGTTAAGAAACAGCTACCAGATTGGTTATGACGGCTCCCTCAGAATTATCTACGCCAGTGGCCTGGACTCACACTACCAAACAGA GCCGCACGTTCTGGCTGGCACCGCTAATCCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAACGGTCAAAACTTGGTGGAATG GAGATTCCGAAAAGAGCAAGCCCAAGGGAAAGTCAATGTCTTTGGCCGCAAGCTCAGGGTTAATGGCAGAAACCTCCTTTCAGTTGACTT TGATCGAACAACAAAGACAGAAAAGATCTATGACGACCACCGTAAATTTCTACTGAGGATCGCCTACGACACGTCTGGGCACCCGACTCT CTGGCTGCCAAGCAGCAAGCTGATGGCCGTCAATGTCACCTATTCATCCACAGGTCAAATTGCCAGCATCCAGCGAGGCACCACTAGCGA GAAAGTAGATTATGACGGACAGGGGAGGATCGTGTCTCGGGTCTTTGCTGATGGTAAAACATGGAGTTACACATATTTAGAAAAGTCCAT GGTTCTTCTGCTTCATAGCCAGCGGCAGTACATCTTCGAATACGATATGTGGGACCGCCTGTCTGCCATCACCATGCCCAGTGTGGCTCG CCACACCATGCAGACCATCCGATCCATTGGCTACTACCGCAACATATACAACCCCCCGGAAAGCAACGCCTCCATCATCACGGACTACAA CGAGGAAGGGCTGCTTCTACAAACAGCTTTCTTGGGTACAAGTCGGAGGGTCTTATTCAAATACAGAAGGCAGACTAGGCTCTCAGAAAT TTTATATGATAGCACAAGAGTCAGTTTTACCTATGATGAAACAGCAGGAGTCCTAAAGACAGTAAACCTCCAGAGTGATGGTTTTATTTG CACCATTAGATACAGGCAAATTGGTCCCCTGATTGACAGGCAGATTTTCCGCTTTAGTGAAGATGGGATGGTAAATGCAAGATTTGACTA TAGCTATGACAACAGCTTTCGAGTGACCAGCATGCAGGGTGTGATCAATGAAACGCCACTGCCTATTGATCTGTATCAGTTTGATGACAT TTCTGGCAAAGTTGAGCAGTTTGGAAAGTTTGGAGTTATATATTATGATATTAACCAGATCATTTCTACAGCTGTAATGACCTATACGAA GCACTTTGATGCTCATGGCCGTATCAAGGAGATTCAATATGAGATATTCAGGTCGCTCATGTACTGGATTACAATTCAGTATGATAACAT GGGTCGGGTAACCAAGAGAGAGATTAAAATAGGGCCCTTTGCCAACACCACCAAATATGCTTATGAATATGATGTTGATGGACAGCTCCA AACAGTTTACCTCAATGAAAAGATAATGTGGCGGTACAACTACGATCTGAATGGAAACCTCCATTTACTGAACCCAAGTAACAGTGCGCG TCTGACACCCCTTCGCTATGACCTGCGAGACAGAATCACTCGACTGGGTGATGTTCAATATCGGTTGGATGAAGATGGTTTCCTACGTCA AAGGGGCACGGAAATCTTTGAATATAGCTCCAAGGGGCTTCTAACTCGAGTTTACAGTAAAGGCAGTGGCTGGACAGTGATCTACCGTTA TGACGGCCTGGGAAGGCGTGTTTCTAGCAAAACCAGTCTAGGACAGCACCTGCAGTTTTTTTATGCTGACTTAACTTATCCCACTAGGAT TACTCATGTCTACAACCATTCGAGTTCAGAAATTACCTCCCTGTATTATGATCTCCAAGGACATCTTTTTGCCATGGAAATCAGCAGTGG GGATGAATTCTATATTGCATCGGATAACACAGGGACACCACTGGCTGTGTTCAGTAGCAATGGGCTTATGCTGAAACAGATTCAGTACAC TGCATATGGGGAAATCTATTTTGACTCTAATATTGACTTTCAACTGGTAATTGGATTTCATGGTGGCCTGTATGACCCACTCACCAAATT AATCCACTTTGGAGAAAGAGATTATGACATTTTGGCAGGACGGTGGACAACACCTGACATAGAAATCTGGAAAAGAATTGGGAAGGACCC AGCTCCTTTTAACTTGTACATGTTTAGGAATAACAACCCTGCAAGCAAAATCCATGACGTGAAAGATTACATCACAGATGTTAACAGCTG GCTGGTGACATTTGGTTTCCATCTGCACAATGCTATTCCTGGATTCCCTGTTCCCAAATTTGATTTAACAGAACCTTCTTACGAACTTGT GAAGAGTCAGCAGTGGGATGATATACCGCCCATCTTCGGAGTCCAGCAGCAAGTGGCGCGGCAGGCCAAGGCCTTCCTGTCGCTGGGGAA GATGGCCGAGGTGCAGGTGAGCCGGCGCCGGGCCGGCGGCGCGCAGTCCTGGCTGTGGTTCGCCACGGTCAAGTCGCTGATCGGCAAGGG CGTCATGCTGGCCGTCAGCCAGGGCCGCGTGCAGACCAACGTGCTCAACATCGCCAACGAGGACTGCATCAAGGTGGCGGCCGTGCTCAA CAACGCCTTCTACCTGGAGAACCTGCACTTCACCATCGAGGGCAAGGACACGCACTACTTCATCAAGACCACCACGCCCGAGAGCGACCT GGGCACGCTGCGGTTGACCAGCGGCCGCAAGGCGCTGGAGAACGGCATCAACGTGACGGTGTCGCAGTCCACCACGGTGGTGAACGGCAG GACGCGCAGGTTCGCGGACGTGGAGATGCAGTTCGGCGCGCTGGCGCTGCACGTGCGCTACGGCATGACCCTGGACGAGGAGAAGGCGCG CATCCTGGAGCAGGCGCGGCAGCGCGCGCTCGCCCGGGCCTGGGCGCGCGAGCAGCAGCGCGTGCGCGACGGCGAGGAGGGCGCGCGCCT CTGGACGGAGGGCGAGAAGCGGCAGCTGCTGAGCGCCGGCAAGGTGCAGGGCTACGACGGGTACTACGTACTCTCGGTGGAGCAGTACCC CGAGCTGGCCGACAGCGCCAACAACATCCAGTTCCTGCGGCAGAGCGAGATCGGCAGGAGGTAACGCCCGGGCCGCGCCCGCCGAGCCGC TCACGCCCTGCCCACATTGTCCTGTGGCACAACCCGAGTGGGACTCTCCAACGCCCAAGAGCCTTCCTCCCGGGGGAATGAGACTGCTGT TACGACCCACACCCACACCGCGAAAACAAGGACCGCTTTTTTCCGAATGACCTTAAAGGTGATCGGCTTTAACGAATATGTTTACATATG CATAGCGCTGCACTCAGTCGGACTGAACGTAGCCAGAGGAAAAAAAAATCATCAAGGACAAAGGCCTCGACCTGTTGCGCTGGGCCGTCT >In-frame_ENST00000367942_ENST00000406950_TCGA-VT-A80J-01A_ATF6_chr1_161762117_+_TENM3_chr4_183522077_length(amino acids)=2777AA_start in transcript=10_stop in transcript=8343 MPPPSQILITEFQGEGTCEMGEPAGVAGTMESPFSPGLFHRLDEDWDSALFAELGYFTDTDELQLEAANETYENNFDNLDFDLDLMPWES DIWDINNQICTVKDIKAEPQPLSPASSSYSVSSPRSVDSYSSTQHVPEELDLSSSSQMSPLSLYGENSNSLSSAEPLKEDKPVTGPRNKT ENGLTPKKKIQVNSKPSIQPKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTKEQPASNQGQSTLQPLPPSHKQH SAQHHPSITSLNRNSLTNRRNQSPAPPAALPAELQTTPESVQLQDSWVLGSNVPLESRHFLFKTGTGTTPLFSTATPGYTMASGSVYSPP TRPLPRNTLSRSAFKFKKSSKYCSWKCTALCAVGVSVLLAILLSYFIAMHLFGLNWQLQQTENDTFENGKVNSDTMPTNTVSLPSGDNGK LGGFTQENNTIDSGELDIGRRAIQEIPPGIFWRSQLFIDQPQFLKFNISLQKDALIGVYGRKGLPPSHTQYDFVELLDGSRLIAREQRSL LETERAGRQARSVSLHEAGFIQYLDSGIWHLAFYNDGKNAEQVSFNTIVIESVVECPRNCHGNGECVSGTCHCFPGFLGPDCSRAACPVL CSGNGQYSKGRCLCFSGWKGTECDVPTTQCIDPQCGGRGICIMGSCACNSGYKGESCEEADCIDPGCSNHGVCIHGECHCSPGWGGSNCE ILKTMCPDQCSGHGTYLQESGSCTCDPNWTGPDCSNEICSVDCGSHGVCMGGTCRCEEGWTGPACNQRACHPRCAEHGTCKDGKCECSQG WNGEHCTIEGCPGLCNSNGRCTLDQNGWHCVCQPGWRGAGCDVAMETLCTDSKDNEGDGLIDCMDPDCCLQSSCQNQPYCRGLPDPQDII SQSLQSPSQQAAKSFYDRISFLIGSDSTHVIPGESPFNKSLASVIRGQVLTADGTPLIGVNVSFFHYPEYGYTITRQDGMFDLVANGGAS LTLVFERSPFLTQYHTVWIPWNVFYVMDTLVMKKEENDIPSCDLSGFVRPNPIIVSSPLSTFFRSSPEDSPIIPETQVLHEETTIPGTDL KLSYLSSRAAGYKSVLKITMTQSIIPFNLMKVHLMVAVVGRLFQKWFPASPNLAYTFIWDKTDAYNQKVYGLSEAVVSVGYEYESCLDLT LWEKRTAILQGYELDASNMGGWTLDKHHVLDVQNGILYKGNGENQFISQQPPVVSSIMGNGRRRSISCPSCNGQADGNKLLAPVALACGI DGSLYVGDFNYVRRIFPSGNVTSVLELSSNPAHRYYLATDPVTGDLYVSDTNTRRIYRPKSLTGAKDLTKNAEVVAGTGEQCLPFDEARC GDGGKAVEATLMSPKGMAVDKNGLIYFVDGTMIRKVDQNGIISTLLGSNDLTSARPLTCDTSMHISQVRLEWPTDLAINPMDNSIYVLDN NVVLQITENRQVRIAAGRPMHCQVPGVEYPVGKHAVQTTLESATAIAVSYSGVLYITETDEKKINRIRQVTTDGEISLVAGIPSECDCKN DANCDCYQSGDGYAKDAKLSAPSSLAASPDGTLYIADLGNIRIRAVSKNKPLLNSMNFYEVASPTDQELYIFDINGTHQYTVSLVTGDYL YNFSYSNDNDITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLTIGTNGCLKSMTAQGLELVLFTYHGNSGLLATKSDETGWTTFFDY DSEGRLTNVTFPTGVVTNLHGDMDKAITVDIESSSREEDVSITSNLSSIDSFYTMVQDQLRNSYQIGYDGSLRIIYASGLDSHYQTEPHV LAGTANPTVAKRNMTLPGENGQNLVEWRFRKEQAQGKVNVFGRKLRVNGRNLLSVDFDRTTKTEKIYDDHRKFLLRIAYDTSGHPTLWLP SSKLMAVNVTYSSTGQIASIQRGTTSEKVDYDGQGRIVSRVFADGKTWSYTYLEKSMVLLLHSQRQYIFEYDMWDRLSAITMPSVARHTM QTIRSIGYYRNIYNPPESNASIITDYNEEGLLLQTAFLGTSRRVLFKYRRQTRLSEILYDSTRVSFTYDETAGVLKTVNLQSDGFICTIR YRQIGPLIDRQIFRFSEDGMVNARFDYSYDNSFRVTSMQGVINETPLPIDLYQFDDISGKVEQFGKFGVIYYDINQIISTAVMTYTKHFD AHGRIKEIQYEIFRSLMYWITIQYDNMGRVTKREIKIGPFANTTKYAYEYDVDGQLQTVYLNEKIMWRYNYDLNGNLHLLNPSNSARLTP LRYDLRDRITRLGDVQYRLDEDGFLRQRGTEIFEYSSKGLLTRVYSKGSGWTVIYRYDGLGRRVSSKTSLGQHLQFFYADLTYPTRITHV YNHSSSEITSLYYDLQGHLFAMEISSGDEFYIASDNTGTPLAVFSSNGLMLKQIQYTAYGEIYFDSNIDFQLVIGFHGGLYDPLTKLIHF GERDYDILAGRWTTPDIEIWKRIGKDPAPFNLYMFRNNNPASKIHDVKDYITDVNSWLVTFGFHLHNAIPGFPVPKFDLTEPSYELVKSQ QWDDIPPIFGVQQQVARQAKAFLSLGKMAEVQVSRRRAGGAQSWLWFATVKSLIGKGVMLAVSQGRVQTNVLNIANEDCIKVAAVLNNAF YLENLHFTIEGKDTHYFIKTTTPESDLGTLRLTSGRKALENGINVTVSQSTTVVNGRTRRFADVEMQFGALALHVRYGMTLDEEKARILE -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ATF6-TENM3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | ATF6 | chr1:161762117 | chr4:183522077 | ENST00000367942 | + | 6 | 16 | 468_589 | 229.33333333333334 | 671.0 | THBS4 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ATF6-TENM3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ATF6-TENM3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ATF6 | C0152200 | Achromatopsia | 2 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
Hgene | ATF6 | C4225297 | ACHROMATOPSIA 7 | 2 | CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | ATF6 | C0003949 | Asbestosis | 1 | CTD_human |
Hgene | ATF6 | C0009398 | Color vision defect | 1 | CTD_human |
Hgene | ATF6 | C0022336 | Creutzfeldt-Jakob disease | 1 | CTD_human |
Hgene | ATF6 | C0035334 | Retinitis Pigmentosa | 1 | CTD_human |
Hgene | ATF6 | C0036457 | Scrapie | 1 | CTD_human |
Hgene | ATF6 | C0085636 | Photophobia | 1 | CTD_human |
Hgene | ATF6 | C0155015 | Color Blindness, Red | 1 | CTD_human |
Hgene | ATF6 | C0155016 | Color Blindness, Red-Green | 1 | CTD_human |
Hgene | ATF6 | C0155017 | Color Blindness, Blue | 1 | CTD_human |
Hgene | ATF6 | C0155018 | Color Blindness, Acquired | 1 | CTD_human |
Hgene | ATF6 | C0239777 | Color Blindness, Green | 1 | CTD_human |
Hgene | ATF6 | C0242225 | Color blindness | 1 | CTD_human |
Hgene | ATF6 | C0376329 | New Variant Creutzfeldt-Jakob Disease | 1 | CTD_human |
Hgene | ATF6 | C0700501 | Congenital nystagmus | 1 | CTD_human |
Hgene | ATF6 | C0751042 | Color Blindness, Inherited | 1 | CTD_human |
Hgene | ATF6 | C0751043 | Monochromatopsia | 1 | CTD_human |
Hgene | ATF6 | C0751254 | Creutzfeldt-Jakob Disease, Familial | 1 | CTD_human |
Hgene | ATF6 | C2930617 | Pulmonary Fibrosis - from Asbestos Exposure | 1 | CTD_human |
Hgene | ATF6 | C3489532 | Cone-Rod Dystrophy 2 | 1 | ORPHANET |
Tgene | TENM3 | C0009171 | Cocaine Abuse | 1 | CTD_human |
Tgene | TENM3 | C0236736 | Cocaine-Related Disorders | 1 | CTD_human |
Tgene | TENM3 | C0264423 | Asthma, Occupational | 1 | CTD_human |
Tgene | TENM3 | C0600427 | Cocaine Dependence | 1 | CTD_human |
Tgene | TENM3 | C2931501 | Microphthalmia associated with colobomatous cyst | 1 | ORPHANET |
Tgene | TENM3 | C3554592 | MICROPHTHALMIA, ISOLATED, WITH COLOBOMA 9 | 1 | CTD_human;GENOMICS_ENGLAND |