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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RPRD1A-INO80C (FusionGDB2 ID:76767) |
Fusion Gene Summary for RPRD1A-INO80C |
Fusion gene summary |
Fusion gene information | Fusion gene name: RPRD1A-INO80C | Fusion gene ID: 76767 | Hgene | Tgene | Gene symbol | RPRD1A | INO80C | Gene ID | 55197 | 125476 |
Gene name | regulation of nuclear pre-mRNA domain containing 1A | INO80 complex subunit C | |
Synonyms | HsT3101|P15RS | C18orf37|IES6|hIes6 | |
Cytomap | 18q12.2 | 18q12.2 | |
Type of gene | protein-coding | protein-coding | |
Description | regulation of nuclear pre-mRNA domain-containing protein 1ACDKN2B-related proteinCyclin-dependent kinase inhibitor 2B-related protein (p15INK4B-related protein)cyclin-dependent kinase 2B-inhibitor-related proteinp15INK4B-related protein | INO80 complex subunit CIES6 homolog | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q6PI98 | |
Ensembl transtripts involved in fusion gene | ENST00000590898, ENST00000399022, ENST00000337059, ENST00000357384, ENST00000588737, ENST00000319040, ENST00000588459, | ENST00000592173, ENST00000334598, ENST00000590757, ENST00000441607, ENST00000586489, | |
Fusion gene scores | * DoF score | 13 X 14 X 7=1274 | 3 X 3 X 3=27 |
# samples | 17 | 3 | |
** MAII score | log2(17/1274*10)=-2.9057586261186 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: RPRD1A [Title/Abstract] AND INO80C [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RPRD1A(33647217)-INO80C(33060527), # samples:1 RPRD1A(33647217)-INO80C(33048706), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across RPRD1A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across INO80C (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-24-2281-01A | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
ChimerDB4 | OV | TCGA-24-2281-01A | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
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Fusion Gene ORF analysis for RPRD1A-INO80C |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000590898 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-3CDS | ENST00000590898 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-intron | ENST00000590898 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-intron | ENST00000590898 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-5UTR | ENST00000590898 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
In-frame | ENST00000399022 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
In-frame | ENST00000399022 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-intron | ENST00000399022 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-intron | ENST00000399022 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-5UTR | ENST00000399022 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-3CDS | ENST00000337059 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-3CDS | ENST00000337059 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-intron | ENST00000337059 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-intron | ENST00000337059 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-5UTR | ENST00000337059 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
In-frame | ENST00000357384 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
In-frame | ENST00000357384 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-intron | ENST00000357384 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-intron | ENST00000357384 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-5UTR | ENST00000357384 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-3CDS | ENST00000588737 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-3CDS | ENST00000588737 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-intron | ENST00000588737 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-intron | ENST00000588737 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-5UTR | ENST00000588737 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
In-frame | ENST00000319040 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
In-frame | ENST00000319040 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-intron | ENST00000319040 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-intron | ENST00000319040 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5CDS-5UTR | ENST00000319040 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-3CDS | ENST00000588459 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-3CDS | ENST00000588459 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-intron | ENST00000588459 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-intron | ENST00000588459 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
intron-5UTR | ENST00000588459 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - |
5UTR-intron | ENST00000590898 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000590898 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000590898 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000590898 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000590898 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000399022 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000399022 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000399022 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000399022 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000399022 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000337059 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000337059 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000337059 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000337059 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000337059 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000357384 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000357384 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000357384 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000357384 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000357384 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000588737 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000588737 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000588737 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000588737 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5UTR-intron | ENST00000588737 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000319040 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000319040 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000319040 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000319040 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
5CDS-intron | ENST00000319040 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000588459 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000588459 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000588459 | ENST00000590757 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000588459 | ENST00000441607 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
intron-intron | ENST00000588459 | ENST00000586489 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33048706 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000399022 | RPRD1A | chr18 | 33647217 | - | ENST00000592173 | INO80C | chr18 | 33060527 | - | 3353 | 323 | 332 | 760 | 142 |
ENST00000399022 | RPRD1A | chr18 | 33647217 | - | ENST00000334598 | INO80C | chr18 | 33060527 | - | 1024 | 323 | 332 | 745 | 137 |
ENST00000357384 | RPRD1A | chr18 | 33647217 | - | ENST00000592173 | INO80C | chr18 | 33060527 | - | 3333 | 303 | 312 | 740 | 142 |
ENST00000357384 | RPRD1A | chr18 | 33647217 | - | ENST00000334598 | INO80C | chr18 | 33060527 | - | 1004 | 303 | 312 | 725 | 137 |
ENST00000319040 | RPRD1A | chr18 | 33647217 | - | ENST00000592173 | INO80C | chr18 | 33060527 | - | 3333 | 303 | 312 | 740 | 142 |
ENST00000319040 | RPRD1A | chr18 | 33647217 | - | ENST00000334598 | INO80C | chr18 | 33060527 | - | 1004 | 303 | 312 | 725 | 137 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000399022 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - | 0.003819538 | 0.99618053 |
ENST00000399022 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - | 0.011326567 | 0.9886734 |
ENST00000357384 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - | 0.00393049 | 0.99606955 |
ENST00000357384 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - | 0.014525378 | 0.9854746 |
ENST00000319040 | ENST00000592173 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - | 0.00393049 | 0.99606955 |
ENST00000319040 | ENST00000334598 | RPRD1A | chr18 | 33647217 | - | INO80C | chr18 | 33060527 | - | 0.014525378 | 0.9854746 |
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Fusion Genomic Features for RPRD1A-INO80C |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RPRD1A-INO80C |
Go to FGviewer for the breakpoints of chr18:33647217-chr18:33060527 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | INO80C |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000319040 | - | 1 | 7 | 244_286 | 50.333333333333336 | 290.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000337059 | - | 1 | 8 | 244_286 | 0.0 | 522.3333333333334 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000357384 | - | 1 | 8 | 244_286 | 50.333333333333336 | 471.6666666666667 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000399022 | - | 1 | 7 | 244_286 | 50.333333333333336 | 313.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000588737 | - | 1 | 8 | 244_286 | 0 | 277.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000590898 | - | 1 | 9 | 244_286 | 0 | 488.6666666666667 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000319040 | - | 1 | 7 | 2_133 | 50.333333333333336 | 290.0 | Domain | CID |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000337059 | - | 1 | 8 | 2_133 | 0.0 | 522.3333333333334 | Domain | CID |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000357384 | - | 1 | 8 | 2_133 | 50.333333333333336 | 471.6666666666667 | Domain | CID |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000399022 | - | 1 | 7 | 2_133 | 50.333333333333336 | 313.0 | Domain | CID |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000588737 | - | 1 | 8 | 2_133 | 0 | 277.0 | Domain | CID |
Hgene | RPRD1A | chr18:33647217 | chr18:33060527 | ENST00000590898 | - | 1 | 9 | 2_133 | 0 | 488.6666666666667 | Domain | CID |
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Fusion Gene Sequence for RPRD1A-INO80C |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000399022_ENST00000592173_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(transcript)=3353nt_BP=323nt ACTGCCGGCCGGACGCCATCTTGCTGGTTTGCGGCCGGTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGG GGGCGAGGCCGCAGCTAGGGCGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGC CTTCTCTGAGGCGGCGCTGGAGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCA CCGTAAACACTCGCGTCCCATCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGG TGCCCTCTGAGTTTAGCACAGGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACGGTG GCGCAGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGCATTGCCGTGGCAACTGAACGATC CTAACTACTTCAGTATTGATGCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCTGATGTTTCAGGTCTGCTTGAACCACCAAACTGTT TTCCACAGAGGCTGCATCAATTGACATTCCCACTAGCAATGGATGAGGGTTCCAATTTTTCCAGATGCTCACCAACACTTGTTAATTTTG GTTTTGTTTTCATTATGGCCATTCTGGTGGGTGTAAAGTAGCATCTCATTGTGGCTTGACTGAATTTCTCTAATGAGTAATGATGTTGAG CATTTTTCATGTGCTTATTGGCTATTTGTATATCTTTGTTGGAGAAATATCTGTTCAAGTTCTTTGGCCATTTTAAAATTGGGTTGTCTT TTTGTTGTTGAATTGTAAAGTTCTTTAGATATTCTGAATACTAGATCCTTATTAAATATATGATTTGAAAATATTTTTCCCATTTTGAAT GTTGTCTTTTCATTTTTTGGATAGTGTCTTTTGGTGCACCAAACTTCAAAAATTTTTTCGAAGTCCAGTTTATCAATTTTTTATTTTGTT GCCTGTGCTTTTGGTGTCATATCCAATAAGTCATTGCCAAATCCAATGTCACAAATATATTTTTGCTGCTTTCTTGTAAGAGTTATACAG TTTTAGCTCATATGTTTAGGTCTTTGATGCATTTTGAGTTAATTTTTGTATGTAGTGTAGGATAAGGGTCTAACTTCATTCCTTTGCATG TAAATATTCCATTTTTCTGGCACCATTTGTTGTAGGAACTGTCATTTCCCCATTAAATGATTTGGCATCCTTGTCAGAAATCAATTGTCC ATACATGTGAGGGTTTATTTCTGGGCTCCCAATTCTATTCCATTGGTCTATACATCTGTTCCCATGCCAGTACCACACTGTTTGATTAAT GTCGATTTTTAGTAAGTTTTGAAATCAGGAAGTGTGAATCCTCCAACTTTGTTCTTTTCAAGATCATTTTGGTTATATGGGTTACCTTAA GATTCCATTTGAATTTTCGGATGGGTTTTTCTATTTTTGTAAAAAATATCATTGGGATTTTGATAGGAATTGCACTGAATCTGTAGATCG CTTTGGGTAGTACTATCATATTAACAATATTAAGTCTTCCAAGCCATAAACATGGACTGTCTTTCCATTTATTTAGATTTTCTTTAATTT CTTTCAGCAATGTTTTGCAGTATTCAGTGTACAAGTCTTTTGCCTCCTTTGTTAAATTTATTCCTAAGGATGCTATTCTTTCTGATGCTA GTAAAATAGTTTTCCTAATTTCATTTTCAGATCATGCATAACCACCACCATAAACATGATTCCAACACCCCAGAGTATTCCCTCAGTCTG ACCTTTTGTAAAGTGGTGCTTTTTAAAATTTAATTTTCCAATTGCTTGTTGCTAGTGTATAGAAATACGACTGATACTTTTATATTGGCC TTGTATCCTGAGACCCTGTAAATTCACTTATTAGTTCTAGACAGTTTTAATTCTTTCTTTCCAATCTTTATGCCTATTATTTCTGTTTTG TTTTGTTTTTTAAACAGGGTTTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATTCCAACTCACTGCACCCTCGACCTCCTGGGCT CAAGTCATCCTCCCACCTCAGCCTTCCAAGTAGCTGGGACTACAAGCATGAGCCACCACACCCAGCTAATTTTTTTTCTTTTCTTTTTCT TTTTTTTTTTTTTTGGAGGGTGCAGGGAGCAGAGTCTTGCTCTGTTGCCCAGGCTGGTCTCAAATTCCTGAGCTCAAGTAATTCATACAC CTTGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGTCACCTTGCCTGACTATTACTTCTTTTTTTGAGACAGTCTTGCTCTGTTGCCAG GCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCCGCCTCATGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGG GACTACAGATGCATGCCACCACACCAAGCTAATTTTTAGATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCT CTTGACCTCATGATCCACCTGCCTCAGCCTCCCAACATGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCTATTATTCCTTTTTTTG CCCTATTGTCCCAGTGGATAGTGATGTCCAGTAGAGCGTTGAATCAAAGTGGTAAAATTGTGCGTCCTTGCCTTGTTCTCCACGTTAAGG TGAAATTTTGAAGATTTCATTATTACATATGATGTAAGCTGTAGGTTTTTATTTATTTATTTATTTAGAGACAGGGTCTTGCTCTGTCAC CCAGGCTGGAGTACAGTGGCATGATCCACTGTAGCCTTGACCTCCCAGTCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAATAGCTGAGA CCACAGGCACATGCCACCATACCCTGCTAATTTTTTATTTTTTGTAGACATGGGGTCTTACTATCTTGACCAGGCTGGTCTCAAACTCAT GGGCTCAAATCATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCTAACTGTGGGCTTTTTTT GAAATGTCTTTTTCAGGTTGAGGAAGGTCCCTTCTATTCCTAGTGTACTGAGAGTTTGTATCATGAAAAGGTATTGAATTTTGTCAAATG TTGTTCCTGTGTCTATTGAGATGGCTGTATGGGTTTTCTCTTTTTTCTGATAATGTGATGAATTATATGGATTTATTAATATTGAAATAA >In-frame_ENST00000399022_ENST00000592173_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(amino acids)=142AA_start in transcript=332_stop in transcript=760 MEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV -------------------------------------------------------------- >In-frame_ENST00000399022_ENST00000334598_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(transcript)=1024nt_BP=323nt ACTGCCGGCCGGACGCCATCTTGCTGGTTTGCGGCCGGTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGG GGGCGAGGCCGCAGCTAGGGCGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGC CTTCTCTGAGGCGGCGCTGGAGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCA CCGTAAACACTCGCGTCCCATCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGG TGCCCTCTGAGTTTAGCACAGGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACGGTG GCGCAGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGCATTGCCGTGGCAACTGAACGATC CTAACTACTTCAGTATTGATGCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCTGATGTTTCAGGTCTGCTTGCCAACTACACAGACC CCCAGAGCAAACTGCGGTTCAGCACCATTGAAGAGTTTTCCTACATTCGGAGGCTGCCCTCTGACGTCGTCACCGGCTACCTGGCCCTGA GGAAGGCCACGAGCATCGTTCCCTGAGCCCCAGAAAGGGAGATGAAGTGGAAAGCTGTTTCAAAAACAGACTCTGGACTCATGATTTTGT TTCACGGAAACAAACTCGTTCTGCTGTCAATCTGAAAATGCCAGTGCTGTGCCTTGGAAAGAATGTTTGGCTTTAATTTAAGGGTTTTTT TTTTTTTTAGTGTGTGTTTTCCCTCCAAGTGTGATATTTCCTGCTGAATTAAATTATACTTCAGTTGTTGCCTCAAGTAAAGGTGTTTGA >In-frame_ENST00000399022_ENST00000334598_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(amino acids)=137AA_start in transcript=332_stop in transcript=745 MEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV -------------------------------------------------------------- >In-frame_ENST00000357384_ENST00000592173_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(transcript)=3333nt_BP=303nt TTGCTGGTTTGCGGCCGGTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGGGGGCGAGGCCGCAGCTAGGG CGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGCCTTCTCTGAGGCGGCGCTGG AGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGTCCCA TCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGGTGCCCTCTGAGTTTAGCACA GGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACGGTGGCGCAGTAGCTGGCAAGAAG AACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGCATTGCCGTGGCAACTGAACGATCCTAACTACTTCAGTATTGAT GCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCTGATGTTTCAGGTCTGCTTGAACCACCAAACTGTTTTCCACAGAGGCTGCATCAA TTGACATTCCCACTAGCAATGGATGAGGGTTCCAATTTTTCCAGATGCTCACCAACACTTGTTAATTTTGGTTTTGTTTTCATTATGGCC ATTCTGGTGGGTGTAAAGTAGCATCTCATTGTGGCTTGACTGAATTTCTCTAATGAGTAATGATGTTGAGCATTTTTCATGTGCTTATTG GCTATTTGTATATCTTTGTTGGAGAAATATCTGTTCAAGTTCTTTGGCCATTTTAAAATTGGGTTGTCTTTTTGTTGTTGAATTGTAAAG TTCTTTAGATATTCTGAATACTAGATCCTTATTAAATATATGATTTGAAAATATTTTTCCCATTTTGAATGTTGTCTTTTCATTTTTTGG ATAGTGTCTTTTGGTGCACCAAACTTCAAAAATTTTTTCGAAGTCCAGTTTATCAATTTTTTATTTTGTTGCCTGTGCTTTTGGTGTCAT ATCCAATAAGTCATTGCCAAATCCAATGTCACAAATATATTTTTGCTGCTTTCTTGTAAGAGTTATACAGTTTTAGCTCATATGTTTAGG TCTTTGATGCATTTTGAGTTAATTTTTGTATGTAGTGTAGGATAAGGGTCTAACTTCATTCCTTTGCATGTAAATATTCCATTTTTCTGG CACCATTTGTTGTAGGAACTGTCATTTCCCCATTAAATGATTTGGCATCCTTGTCAGAAATCAATTGTCCATACATGTGAGGGTTTATTT CTGGGCTCCCAATTCTATTCCATTGGTCTATACATCTGTTCCCATGCCAGTACCACACTGTTTGATTAATGTCGATTTTTAGTAAGTTTT GAAATCAGGAAGTGTGAATCCTCCAACTTTGTTCTTTTCAAGATCATTTTGGTTATATGGGTTACCTTAAGATTCCATTTGAATTTTCGG ATGGGTTTTTCTATTTTTGTAAAAAATATCATTGGGATTTTGATAGGAATTGCACTGAATCTGTAGATCGCTTTGGGTAGTACTATCATA TTAACAATATTAAGTCTTCCAAGCCATAAACATGGACTGTCTTTCCATTTATTTAGATTTTCTTTAATTTCTTTCAGCAATGTTTTGCAG TATTCAGTGTACAAGTCTTTTGCCTCCTTTGTTAAATTTATTCCTAAGGATGCTATTCTTTCTGATGCTAGTAAAATAGTTTTCCTAATT TCATTTTCAGATCATGCATAACCACCACCATAAACATGATTCCAACACCCCAGAGTATTCCCTCAGTCTGACCTTTTGTAAAGTGGTGCT TTTTAAAATTTAATTTTCCAATTGCTTGTTGCTAGTGTATAGAAATACGACTGATACTTTTATATTGGCCTTGTATCCTGAGACCCTGTA AATTCACTTATTAGTTCTAGACAGTTTTAATTCTTTCTTTCCAATCTTTATGCCTATTATTTCTGTTTTGTTTTGTTTTTTAAACAGGGT TTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATTCCAACTCACTGCACCCTCGACCTCCTGGGCTCAAGTCATCCTCCCACCTCA GCCTTCCAAGTAGCTGGGACTACAAGCATGAGCCACCACACCCAGCTAATTTTTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTGGAGGG TGCAGGGAGCAGAGTCTTGCTCTGTTGCCCAGGCTGGTCTCAAATTCCTGAGCTCAAGTAATTCATACACCTTGGCCTCCCAAAGTGCTA GGATTACAGGCATGAGTCACCTTGCCTGACTATTACTTCTTTTTTTGAGACAGTCTTGCTCTGTTGCCAGGCTGGAGTGCAGTGGCATGA TCTCGGCTCACTGCAACCTCCGCCTCATGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGATGCATGCCACC ACACCAAGCTAATTTTTAGATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATCCACCT GCCTCAGCCTCCCAACATGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCTATTATTCCTTTTTTTGCCCTATTGTCCCAGTGGATA GTGATGTCCAGTAGAGCGTTGAATCAAAGTGGTAAAATTGTGCGTCCTTGCCTTGTTCTCCACGTTAAGGTGAAATTTTGAAGATTTCAT TATTACATATGATGTAAGCTGTAGGTTTTTATTTATTTATTTATTTAGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGC ATGATCCACTGTAGCCTTGACCTCCCAGTCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAATAGCTGAGACCACAGGCACATGCCACCAT ACCCTGCTAATTTTTTATTTTTTGTAGACATGGGGTCTTACTATCTTGACCAGGCTGGTCTCAAACTCATGGGCTCAAATCATCCTCCTG CCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCTAACTGTGGGCTTTTTTTGAAATGTCTTTTTCAGGTTG AGGAAGGTCCCTTCTATTCCTAGTGTACTGAGAGTTTGTATCATGAAAAGGTATTGAATTTTGTCAAATGTTGTTCCTGTGTCTATTGAG ATGGCTGTATGGGTTTTCTCTTTTTTCTGATAATGTGATGAATTATATGGATTTATTAATATTGAAATAATAAAATGACACTGCATTCTT >In-frame_ENST00000357384_ENST00000592173_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(amino acids)=142AA_start in transcript=312_stop in transcript=740 MEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV -------------------------------------------------------------- >In-frame_ENST00000357384_ENST00000334598_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(transcript)=1004nt_BP=303nt TTGCTGGTTTGCGGCCGGTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGGGGGCGAGGCCGCAGCTAGGG CGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGCCTTCTCTGAGGCGGCGCTGG AGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGTCCCA TCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGGTGCCCTCTGAGTTTAGCACA GGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACGGTGGCGCAGTAGCTGGCAAGAAG AACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGCATTGCCGTGGCAACTGAACGATCCTAACTACTTCAGTATTGAT GCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCTGATGTTTCAGGTCTGCTTGCCAACTACACAGACCCCCAGAGCAAACTGCGGTTC AGCACCATTGAAGAGTTTTCCTACATTCGGAGGCTGCCCTCTGACGTCGTCACCGGCTACCTGGCCCTGAGGAAGGCCACGAGCATCGTT CCCTGAGCCCCAGAAAGGGAGATGAAGTGGAAAGCTGTTTCAAAAACAGACTCTGGACTCATGATTTTGTTTCACGGAAACAAACTCGTT CTGCTGTCAATCTGAAAATGCCAGTGCTGTGCCTTGGAAAGAATGTTTGGCTTTAATTTAAGGGTTTTTTTTTTTTTTAGTGTGTGTTTT CCCTCCAAGTGTGATATTTCCTGCTGAATTAAATTATACTTCAGTTGTTGCCTCAAGTAAAGGTGTTTGACAAGAAGATACAATAAAACC >In-frame_ENST00000357384_ENST00000334598_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(amino acids)=137AA_start in transcript=312_stop in transcript=725 MEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV -------------------------------------------------------------- >In-frame_ENST00000319040_ENST00000592173_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(transcript)=3333nt_BP=303nt TTGCTGGTTTGCGGCCGGTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGGGGGCGAGGCCGCAGCTAGGG CGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGCCTTCTCTGAGGCGGCGCTGG AGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGTCCCA TCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGGTGCCCTCTGAGTTTAGCACA GGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACGGTGGCGCAGTAGCTGGCAAGAAG AACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGCATTGCCGTGGCAACTGAACGATCCTAACTACTTCAGTATTGAT GCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCTGATGTTTCAGGTCTGCTTGAACCACCAAACTGTTTTCCACAGAGGCTGCATCAA TTGACATTCCCACTAGCAATGGATGAGGGTTCCAATTTTTCCAGATGCTCACCAACACTTGTTAATTTTGGTTTTGTTTTCATTATGGCC ATTCTGGTGGGTGTAAAGTAGCATCTCATTGTGGCTTGACTGAATTTCTCTAATGAGTAATGATGTTGAGCATTTTTCATGTGCTTATTG GCTATTTGTATATCTTTGTTGGAGAAATATCTGTTCAAGTTCTTTGGCCATTTTAAAATTGGGTTGTCTTTTTGTTGTTGAATTGTAAAG TTCTTTAGATATTCTGAATACTAGATCCTTATTAAATATATGATTTGAAAATATTTTTCCCATTTTGAATGTTGTCTTTTCATTTTTTGG ATAGTGTCTTTTGGTGCACCAAACTTCAAAAATTTTTTCGAAGTCCAGTTTATCAATTTTTTATTTTGTTGCCTGTGCTTTTGGTGTCAT ATCCAATAAGTCATTGCCAAATCCAATGTCACAAATATATTTTTGCTGCTTTCTTGTAAGAGTTATACAGTTTTAGCTCATATGTTTAGG TCTTTGATGCATTTTGAGTTAATTTTTGTATGTAGTGTAGGATAAGGGTCTAACTTCATTCCTTTGCATGTAAATATTCCATTTTTCTGG CACCATTTGTTGTAGGAACTGTCATTTCCCCATTAAATGATTTGGCATCCTTGTCAGAAATCAATTGTCCATACATGTGAGGGTTTATTT CTGGGCTCCCAATTCTATTCCATTGGTCTATACATCTGTTCCCATGCCAGTACCACACTGTTTGATTAATGTCGATTTTTAGTAAGTTTT GAAATCAGGAAGTGTGAATCCTCCAACTTTGTTCTTTTCAAGATCATTTTGGTTATATGGGTTACCTTAAGATTCCATTTGAATTTTCGG ATGGGTTTTTCTATTTTTGTAAAAAATATCATTGGGATTTTGATAGGAATTGCACTGAATCTGTAGATCGCTTTGGGTAGTACTATCATA TTAACAATATTAAGTCTTCCAAGCCATAAACATGGACTGTCTTTCCATTTATTTAGATTTTCTTTAATTTCTTTCAGCAATGTTTTGCAG TATTCAGTGTACAAGTCTTTTGCCTCCTTTGTTAAATTTATTCCTAAGGATGCTATTCTTTCTGATGCTAGTAAAATAGTTTTCCTAATT TCATTTTCAGATCATGCATAACCACCACCATAAACATGATTCCAACACCCCAGAGTATTCCCTCAGTCTGACCTTTTGTAAAGTGGTGCT TTTTAAAATTTAATTTTCCAATTGCTTGTTGCTAGTGTATAGAAATACGACTGATACTTTTATATTGGCCTTGTATCCTGAGACCCTGTA AATTCACTTATTAGTTCTAGACAGTTTTAATTCTTTCTTTCCAATCTTTATGCCTATTATTTCTGTTTTGTTTTGTTTTTTAAACAGGGT TTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATTCCAACTCACTGCACCCTCGACCTCCTGGGCTCAAGTCATCCTCCCACCTCA GCCTTCCAAGTAGCTGGGACTACAAGCATGAGCCACCACACCCAGCTAATTTTTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTGGAGGG TGCAGGGAGCAGAGTCTTGCTCTGTTGCCCAGGCTGGTCTCAAATTCCTGAGCTCAAGTAATTCATACACCTTGGCCTCCCAAAGTGCTA GGATTACAGGCATGAGTCACCTTGCCTGACTATTACTTCTTTTTTTGAGACAGTCTTGCTCTGTTGCCAGGCTGGAGTGCAGTGGCATGA TCTCGGCTCACTGCAACCTCCGCCTCATGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGATGCATGCCACC ACACCAAGCTAATTTTTAGATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATCCACCT GCCTCAGCCTCCCAACATGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCTATTATTCCTTTTTTTGCCCTATTGTCCCAGTGGATA GTGATGTCCAGTAGAGCGTTGAATCAAAGTGGTAAAATTGTGCGTCCTTGCCTTGTTCTCCACGTTAAGGTGAAATTTTGAAGATTTCAT TATTACATATGATGTAAGCTGTAGGTTTTTATTTATTTATTTATTTAGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGC ATGATCCACTGTAGCCTTGACCTCCCAGTCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAATAGCTGAGACCACAGGCACATGCCACCAT ACCCTGCTAATTTTTTATTTTTTGTAGACATGGGGTCTTACTATCTTGACCAGGCTGGTCTCAAACTCATGGGCTCAAATCATCCTCCTG CCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCTAACTGTGGGCTTTTTTTGAAATGTCTTTTTCAGGTTG AGGAAGGTCCCTTCTATTCCTAGTGTACTGAGAGTTTGTATCATGAAAAGGTATTGAATTTTGTCAAATGTTGTTCCTGTGTCTATTGAG ATGGCTGTATGGGTTTTCTCTTTTTTCTGATAATGTGATGAATTATATGGATTTATTAATATTGAAATAATAAAATGACACTGCATTCTT >In-frame_ENST00000319040_ENST00000592173_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(amino acids)=142AA_start in transcript=312_stop in transcript=740 MEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV -------------------------------------------------------------- >In-frame_ENST00000319040_ENST00000334598_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(transcript)=1004nt_BP=303nt TTGCTGGTTTGCGGCCGGTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGGGGGCGAGGCCGCAGCTAGGG CGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGCCTTCTCTGAGGCGGCGCTGG AGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGTCCCA TCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGGTGCCCTCTGAGTTTAGCACA GGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACGGTGGCGCAGTAGCTGGCAAGAAG AACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGCATTGCCGTGGCAACTGAACGATCCTAACTACTTCAGTATTGAT GCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCTGATGTTTCAGGTCTGCTTGCCAACTACACAGACCCCCAGAGCAAACTGCGGTTC AGCACCATTGAAGAGTTTTCCTACATTCGGAGGCTGCCCTCTGACGTCGTCACCGGCTACCTGGCCCTGAGGAAGGCCACGAGCATCGTT CCCTGAGCCCCAGAAAGGGAGATGAAGTGGAAAGCTGTTTCAAAAACAGACTCTGGACTCATGATTTTGTTTCACGGAAACAAACTCGTT CTGCTGTCAATCTGAAAATGCCAGTGCTGTGCCTTGGAAAGAATGTTTGGCTTTAATTTAAGGGTTTTTTTTTTTTTTAGTGTGTGTTTT CCCTCCAAGTGTGATATTTCCTGCTGAATTAAATTATACTTCAGTTGTTGCCTCAAGTAAAGGTGTTTGACAAGAAGATACAATAAAACC >In-frame_ENST00000319040_ENST00000334598_TCGA-24-2281-01A_RPRD1A_chr18_33647217_-_INO80C_chr18_33060527_length(amino acids)=137AA_start in transcript=312_stop in transcript=725 MEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RPRD1A-INO80C |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RPRD1A-INO80C |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RPRD1A-INO80C |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |