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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:RSF1-PSMA4 (FusionGDB2 ID:77936)

Fusion Gene Summary for RSF1-PSMA4

check button Fusion gene summary
Fusion gene informationFusion gene name: RSF1-PSMA4
Fusion gene ID: 77936
HgeneTgene
Gene symbol

RSF1

PSMA4

Gene ID

51773

5685

Gene nameremodeling and spacing factor 1proteasome 20S subunit alpha 4
SynonymsHBXAP|RSF-1|XAP8|p325HC9|HsT17706|PSC9
Cytomap

11q14.1

15q25.1

Type of geneprotein-codingprotein-coding
Descriptionremodeling and spacing factor 1HBV pX-associated protein 8hepatitis B virus x-associated proteinp325 subunit of RSF chromatin-remodeling complexproteasome subunit alpha type-4macropain subunit C9multicatalytic endopeptidase complex subunit C9proteasome (prosome, macropain) subunit, alpha type, 4proteasome component C9proteasome subunit HC9proteasome subunit Lproteasome subunit alpha 4prot
Modification date2020031320200327
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000308488, ENST00000360355, 
ENST00000480887, ENST00000530604, 
ENST00000560217, ENST00000044462, 
ENST00000559082, ENST00000413382, 
ENST00000557929, ENST00000558281, 
ENST00000558341, ENST00000558094, 
Fusion gene scores* DoF score24 X 20 X 11=528011 X 11 X 5=605
# samples 3211
** MAII scorelog2(32/5280*10)=-4.04439411935845
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(11/605*10)=-2.4594316186373
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: RSF1 [Title/Abstract] AND PSMA4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointRSF1(77451775)-PSMA4(78837210), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRSF1

GO:0006334

nucleosome assembly

12972596

HgeneRSF1

GO:0006338

chromatin remodeling

9836642

HgeneRSF1

GO:0006352

DNA-templated transcription, initiation

9836642

HgeneRSF1

GO:0016584

nucleosome positioning

9836642

HgeneRSF1

GO:0043392

negative regulation of DNA binding

12972596

HgeneRSF1

GO:0045892

negative regulation of transcription, DNA-templated

11944984

HgeneRSF1

GO:0045893

positive regulation of transcription, DNA-templated

11788598

HgeneRSF1

GO:0050434

positive regulation of viral transcription

11788598


check buttonFusion gene breakpoints across RSF1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PSMA4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-BH-A0AZRSF1chr11

77451775

-PSMA4chr15

78837210

+


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Fusion Gene ORF analysis for RSF1-PSMA4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000308488ENST00000560217RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000308488ENST00000044462RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000308488ENST00000559082RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000308488ENST00000413382RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-3UTRENST00000308488ENST00000557929RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-3UTRENST00000308488ENST00000558281RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-intronENST00000308488ENST00000558341RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-intronENST00000308488ENST00000558094RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000360355ENST00000560217RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000360355ENST00000044462RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000360355ENST00000559082RSF1chr11

77451775

-PSMA4chr15

78837210

+
In-frameENST00000360355ENST00000413382RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-3UTRENST00000360355ENST00000557929RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-3UTRENST00000360355ENST00000558281RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-intronENST00000360355ENST00000558341RSF1chr11

77451775

-PSMA4chr15

78837210

+
5CDS-intronENST00000360355ENST00000558094RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000480887ENST00000560217RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000480887ENST00000044462RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000480887ENST00000559082RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000480887ENST00000413382RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3UTRENST00000480887ENST00000557929RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3UTRENST00000480887ENST00000558281RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-intronENST00000480887ENST00000558341RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-intronENST00000480887ENST00000558094RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000530604ENST00000560217RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000530604ENST00000044462RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000530604ENST00000559082RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3CDSENST00000530604ENST00000413382RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3UTRENST00000530604ENST00000557929RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-3UTRENST00000530604ENST00000558281RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-intronENST00000530604ENST00000558341RSF1chr11

77451775

-PSMA4chr15

78837210

+
intron-intronENST00000530604ENST00000558094RSF1chr11

77451775

-PSMA4chr15

78837210

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000308488RSF1chr1177451775-ENST00000560217PSMA4chr1578837210+14738813031379358
ENST00000308488RSF1chr1177451775-ENST00000044462PSMA4chr1578837210+16988813031379358
ENST00000308488RSF1chr1177451775-ENST00000559082PSMA4chr1578837210+16228813031379358
ENST00000308488RSF1chr1177451775-ENST00000413382PSMA4chr1578837210+16408813031379358
ENST00000360355RSF1chr1177451775-ENST00000560217PSMA4chr1578837210+11976051201103327
ENST00000360355RSF1chr1177451775-ENST00000044462PSMA4chr1578837210+14226051201103327
ENST00000360355RSF1chr1177451775-ENST00000559082PSMA4chr1578837210+13466051201103327
ENST00000360355RSF1chr1177451775-ENST00000413382PSMA4chr1578837210+13646051201103327

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000308488ENST00000560217RSF1chr1177451775-PSMA4chr1578837210+0.000887050.9991129
ENST00000308488ENST00000044462RSF1chr1177451775-PSMA4chr1578837210+0.0004860940.99951386
ENST00000308488ENST00000559082RSF1chr1177451775-PSMA4chr1578837210+0.0005514550.9994486
ENST00000308488ENST00000413382RSF1chr1177451775-PSMA4chr1578837210+0.0005479020.99945205
ENST00000360355ENST00000560217RSF1chr1177451775-PSMA4chr1578837210+0.0010567090.99894327
ENST00000360355ENST00000044462RSF1chr1177451775-PSMA4chr1578837210+0.0006128520.99938715
ENST00000360355ENST00000559082RSF1chr1177451775-PSMA4chr1578837210+0.0006689040.9993311
ENST00000360355ENST00000413382RSF1chr1177451775-PSMA4chr1578837210+0.0006758750.9993242

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Fusion Genomic Features for RSF1-PSMA4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
RSF1chr1177451775-PSMA4chr1578837210+4.67E-070.9999995
RSF1chr1177451775-PSMA4chr1578837210+4.67E-070.9999995

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for RSF1-PSMA4


check button Go to

FGviewer for the breakpoints of chr11:77451775-chr15:78837210

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-41617_84192.666666666666661442.0DomainNote=DDT
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-31517_84161.666666666666661411.0DomainNote=DDT

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-416942_1012192.666666666666661442.0Coiled coilOntology_term=ECO:0000255
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-315942_1012161.666666666666661411.0Coiled coilOntology_term=ECO:0000255
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-111942_101201190.0Coiled coilOntology_term=ECO:0000255
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-4161080_1083192.666666666666661442.0Compositional biasNote=Poly-Ala
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-4161146_1243192.666666666666661442.0Compositional biasNote=Arg-rich
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-4161286_1292192.666666666666661442.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-4161419_1424192.666666666666661442.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-416226_372192.666666666666661442.0Compositional biasNote=Glu-rich
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-416875_884192.666666666666661442.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-3151080_1083161.666666666666661411.0Compositional biasNote=Poly-Ala
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-3151146_1243161.666666666666661411.0Compositional biasNote=Arg-rich
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-3151286_1292161.666666666666661411.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-3151419_1424161.666666666666661411.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-315226_372161.666666666666661411.0Compositional biasNote=Glu-rich
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-315875_884161.666666666666661411.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-1111080_108301190.0Compositional biasNote=Poly-Ala
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-1111146_124301190.0Compositional biasNote=Arg-rich
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-1111286_129201190.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-1111419_142401190.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-111226_37201190.0Compositional biasNote=Glu-rich
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-111875_88401190.0Compositional biasNote=Poly-Glu
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-11117_8401190.0DomainNote=DDT
HgeneRSF1chr11:77451775chr15:78837210ENST00000308488-416891_941192.666666666666661442.0Zinc fingerPHD-type
HgeneRSF1chr11:77451775chr15:78837210ENST00000360355-315891_941161.666666666666661411.0Zinc fingerPHD-type
HgeneRSF1chr11:77451775chr15:78837210ENST00000480887-111891_94101190.0Zinc fingerPHD-type


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Fusion Gene Sequence for RSF1-PSMA4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000308488_ENST00000560217_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1473nt_BP=881nt
TTGTTTTCATTCCCCCTGTCACACGAGGCAGTGGCAAGCCCGAAGGGGAGGAGAGAAGGGGGCGGAAAGAGGGCGGAAAGTGAAAGGCGC
CGAGGGCCGCTCTGTCTCCCGTCTGACTCGGTTCTCGACTGCTCCGGGCCGCCGATGTATTGTGGGATCGCGGAGCCGTCCCTGAGACGC
TGGGATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCC
CCCATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCG
TGCCCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGG
GTGCTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGC
AAATCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGATATGCCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAG
GGCTATCTTGAAATGAGTGTTGAATGCAAACTAGCACTCTTAAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAAT
ATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAA
GATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAG
GAGCCAATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTT
TCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACA
TGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTA
GCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAG
ACAGTAATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAA
GAAAAAGAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTT

>In-frame_ENST00000308488_ENST00000560217_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=358AA_start in transcript=303_stop in transcript=1379
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ
DDQDGSSWKCIVRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVS

--------------------------------------------------------------
>In-frame_ENST00000308488_ENST00000044462_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1698nt_BP=881nt
TTGTTTTCATTCCCCCTGTCACACGAGGCAGTGGCAAGCCCGAAGGGGAGGAGAGAAGGGGGCGGAAAGAGGGCGGAAAGTGAAAGGCGC
CGAGGGCCGCTCTGTCTCCCGTCTGACTCGGTTCTCGACTGCTCCGGGCCGCCGATGTATTGTGGGATCGCGGAGCCGTCCCTGAGACGC
TGGGATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCC
CCCATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCG
TGCCCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGG
GTGCTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGC
AAATCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGATATGCCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAG
GGCTATCTTGAAATGAGTGTTGAATGCAAACTAGCACTCTTAAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAAT
ATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAA
GATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAG
GAGCCAATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTT
TCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACA
TGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTA
GCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAG
ACAGTAATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAA
GAAAAAGAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTT
CCACACTAGGAAGGCTTTACTTTTTTTAACTGGTGCAGTGGGAAAATAGGACATTACATACTGAATTGGGTCCTTGTCATTTCTGTCCAA
TTGAATACTTTATTGTAACGATGATGGTTACCCTTCATGGACGTCTTAATCTTCCACACACATCCCCTTTTTTTGGAATAAAATTTGGAA

>In-frame_ENST00000308488_ENST00000044462_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=358AA_start in transcript=303_stop in transcript=1379
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ
DDQDGSSWKCIVRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVS

--------------------------------------------------------------
>In-frame_ENST00000308488_ENST00000559082_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1622nt_BP=881nt
TTGTTTTCATTCCCCCTGTCACACGAGGCAGTGGCAAGCCCGAAGGGGAGGAGAGAAGGGGGCGGAAAGAGGGCGGAAAGTGAAAGGCGC
CGAGGGCCGCTCTGTCTCCCGTCTGACTCGGTTCTCGACTGCTCCGGGCCGCCGATGTATTGTGGGATCGCGGAGCCGTCCCTGAGACGC
TGGGATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCC
CCCATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCG
TGCCCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGG
GTGCTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGC
AAATCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGATATGCCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAG
GGCTATCTTGAAATGAGTGTTGAATGCAAACTAGCACTCTTAAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAAT
ATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAA
GATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAG
GAGCCAATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTT
TCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACA
TGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTA
GCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAG
ACAGTAATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAA
GAAAAAGAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTT
CCACACTAGGAAGGCTTTACTTTTTTTAACTGGTGCAGTGGGAAAATAGGACATTACATACTGAATTGGGTCCTTGTCATTTCTGTCCAA
TTGAATACTTTATTGTAACGATGATGGTTACCCTTCATGGACGTCTTAATCTTCCACACACATCCCCTTTTTTTGGAATAAAATTTGGAA

>In-frame_ENST00000308488_ENST00000559082_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=358AA_start in transcript=303_stop in transcript=1379
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ
DDQDGSSWKCIVRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVS

--------------------------------------------------------------
>In-frame_ENST00000308488_ENST00000413382_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1640nt_BP=881nt
TTGTTTTCATTCCCCCTGTCACACGAGGCAGTGGCAAGCCCGAAGGGGAGGAGAGAAGGGGGCGGAAAGAGGGCGGAAAGTGAAAGGCGC
CGAGGGCCGCTCTGTCTCCCGTCTGACTCGGTTCTCGACTGCTCCGGGCCGCCGATGTATTGTGGGATCGCGGAGCCGTCCCTGAGACGC
TGGGATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCC
CCCATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCG
TGCCCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGG
GTGCTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGC
AAATCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGATATGCCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAG
GGCTATCTTGAAATGAGTGTTGAATGCAAACTAGCACTCTTAAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAAT
ATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAA
GATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAG
GAGCCAATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTT
TCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACA
TGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTA
GCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAG
ACAGTAATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAA
GAAAAAGAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTT
CCACACTAGGAAGGCTTTACTTTTTTTAACTGGTGCAGTGGGAAAATAGGACATTACATACTGAATTGGGTCCTTGTCATTTCTGTCCAA
TTGAATACTTTATTGTAACGATGATGGTTACCCTTCATGGACGTCTTAATCTTCCACACACATCCCCTTTTTTTGGAATAAAATTTGGAA

>In-frame_ENST00000308488_ENST00000413382_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=358AA_start in transcript=303_stop in transcript=1379
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ
DDQDGSSWKCIVRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVS

--------------------------------------------------------------
>In-frame_ENST00000360355_ENST00000560217_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1197nt_BP=605nt
GATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCCCCC
ATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCGTGC
CCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGGGTG
CTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGCAAA
TCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATT
AATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCAC
AATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAGGAGCCA
ATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTG
CTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATT
GGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATC
AAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAGACAGTA
ATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAA
GAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTTCCACAC

>In-frame_ENST00000360355_ENST00000560217_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=327AA_start in transcript=120_stop in transcript=1103
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRYLLQYQEPIPCEQLVTAL
CDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS

--------------------------------------------------------------
>In-frame_ENST00000360355_ENST00000044462_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1422nt_BP=605nt
GATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCCCCC
ATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCGTGC
CCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGGGTG
CTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGCAAA
TCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATT
AATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCAC
AATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAGGAGCCA
ATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTG
CTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATT
GGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATC
AAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAGACAGTA
ATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAA
GAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTTCCACAC
TAGGAAGGCTTTACTTTTTTTAACTGGTGCAGTGGGAAAATAGGACATTACATACTGAATTGGGTCCTTGTCATTTCTGTCCAATTGAAT
ACTTTATTGTAACGATGATGGTTACCCTTCATGGACGTCTTAATCTTCCACACACATCCCCTTTTTTTGGAATAAAATTTGGAAAATGGA

>In-frame_ENST00000360355_ENST00000044462_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=327AA_start in transcript=120_stop in transcript=1103
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRYLLQYQEPIPCEQLVTAL
CDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS

--------------------------------------------------------------
>In-frame_ENST00000360355_ENST00000559082_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1346nt_BP=605nt
GATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCCCCC
ATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCGTGC
CCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGGGTG
CTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGCAAA
TCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATT
AATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCAC
AATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAGGAGCCA
ATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTG
CTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATT
GGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATC
AAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAGACAGTA
ATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAA
GAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTTCCACAC
TAGGAAGGCTTTACTTTTTTTAACTGGTGCAGTGGGAAAATAGGACATTACATACTGAATTGGGTCCTTGTCATTTCTGTCCAATTGAAT

>In-frame_ENST00000360355_ENST00000559082_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=327AA_start in transcript=120_stop in transcript=1103
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRYLLQYQEPIPCEQLVTAL
CDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS

--------------------------------------------------------------
>In-frame_ENST00000360355_ENST00000413382_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(transcript)=1364nt_BP=605nt
GATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCCCCC
ATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCGTGC
CCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGGGTG
CTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGCAAA
TCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATT
AATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCAC
AATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGGTATTTATTACAGTATCAGGAGCCA
ATACCTTGTGAGCAGTTGGTTACAGCGCTGTGTGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTG
CTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATT
GGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATC
AAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAGTGGAAATTGCAACACTAACAAGAGAGAATGGAAAGACAGTA
ATCAGAGTTCTCAAACAAAAAGAAGTGGAGCAGTTGATCAAAAAACATGAGGAAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAA
GAACAGAAAGAAAAGGATAAATAGAATCAGAGATTTTATTACTCATTTGGGGCACCATTTCAGTGTAAAAGCAGTCCTACTCTTCCACAC
TAGGAAGGCTTTACTTTTTTTAACTGGTGCAGTGGGAAAATAGGACATTACATACTGAATTGGGTCCTTGTCATTTCTGTCCAATTGAAT
ACTTTATTGTAACGATGATGGTTACCCTTCATGGACGTCTTAATCTTCCACACACATCCCCTTTTTTTGGAATAAAATTTGGAAAATGGA

>In-frame_ENST00000360355_ENST00000413382_TCGA-BH-A0AZ_RSF1_chr11_77451775_-_PSMA4_chr15_78837210_length(amino acids)=327AA_start in transcript=120_stop in transcript=1103
MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY
LIKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRYLLQYQEPIPCEQLVTAL
CDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS

--------------------------------------------------------------

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Fusion Gene PPI Analysis for RSF1-PSMA4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for RSF1-PSMA4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for RSF1-PSMA4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgenePSMA4C0007097Carcinoma1CTD_human
TgenePSMA4C0019693HIV Infections1CTD_human
TgenePSMA4C0023903Liver neoplasms1CTD_human
TgenePSMA4C0024667Animal Mammary Neoplasms1CTD_human
TgenePSMA4C0024668Mammary Neoplasms, Experimental1CTD_human
TgenePSMA4C0035222Respiratory Distress Syndrome, Adult1CTD_human
TgenePSMA4C0205696Anaplastic carcinoma1CTD_human
TgenePSMA4C0205697Carcinoma, Spindle-Cell1CTD_human
TgenePSMA4C0205698Undifferentiated carcinoma1CTD_human
TgenePSMA4C0205699Carcinomatosis1CTD_human
TgenePSMA4C0345904Malignant neoplasm of liver1CTD_human
TgenePSMA4C1257925Mammary Carcinoma, Animal1CTD_human
TgenePSMA4C4505456HIV Coinfection1CTD_human