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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:RSF1-TENM4 (FusionGDB2 ID:77940) |
Fusion Gene Summary for RSF1-TENM4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: RSF1-TENM4 | Fusion gene ID: 77940 | Hgene | Tgene | Gene symbol | RSF1 | TENM4 | Gene ID | 51773 | 26011 |
Gene name | remodeling and spacing factor 1 | teneurin transmembrane protein 4 | |
Synonyms | HBXAP|RSF-1|XAP8|p325 | Doc4|ETM5|ODZ4|TEN4|TNM4|Ten-M4|ten-4 | |
Cytomap | 11q14.1 | 11q14.1 | |
Type of gene | protein-coding | protein-coding | |
Description | remodeling and spacing factor 1HBV pX-associated protein 8hepatitis B virus x-associated proteinp325 subunit of RSF chromatin-remodeling complex | teneurin-4odz, odd Oz/ten-m homolog 4protein Odd Oz/ten-m homolog 4tenascin-M4 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000308488, ENST00000360355, ENST00000480887, ENST00000530604, | ENST00000278550, ENST00000533038, | |
Fusion gene scores | * DoF score | 24 X 20 X 11=5280 | 17 X 17 X 9=2601 |
# samples | 32 | 18 | |
** MAII score | log2(32/5280*10)=-4.04439411935845 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/2601*10)=-3.85299758761332 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RSF1 [Title/Abstract] AND TENM4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RSF1(77531574)-TENM4(78449615), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | RSF1-TENM4 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. RSF1-TENM4 seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF. RSF1-TENM4 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RSF1 | GO:0006334 | nucleosome assembly | 12972596 |
Hgene | RSF1 | GO:0006338 | chromatin remodeling | 9836642 |
Hgene | RSF1 | GO:0006352 | DNA-templated transcription, initiation | 9836642 |
Hgene | RSF1 | GO:0016584 | nucleosome positioning | 9836642 |
Hgene | RSF1 | GO:0043392 | negative regulation of DNA binding | 12972596 |
Hgene | RSF1 | GO:0045892 | negative regulation of transcription, DNA-templated | 11944984 |
Hgene | RSF1 | GO:0045893 | positive regulation of transcription, DNA-templated | 11788598 |
Hgene | RSF1 | GO:0050434 | positive regulation of viral transcription | 11788598 |
Fusion gene breakpoints across RSF1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TENM4 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-BH-A0EB-01A | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
ChimerDB4 | HNSC | TCGA-BA-A8YP-01A | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
ChimerDB4 | HNSC | TCGA-BA-A8YP | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
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Fusion Gene ORF analysis for RSF1-TENM4 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000308488 | ENST00000278550 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
5CDS-intron | ENST00000308488 | ENST00000533038 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
In-frame | ENST00000360355 | ENST00000278550 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
5CDS-intron | ENST00000360355 | ENST00000533038 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
intron-3CDS | ENST00000480887 | ENST00000278550 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
intron-intron | ENST00000480887 | ENST00000533038 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
intron-3CDS | ENST00000530604 | ENST00000278550 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
intron-intron | ENST00000530604 | ENST00000533038 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - |
Frame-shift | ENST00000308488 | ENST00000278550 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
5CDS-intron | ENST00000308488 | ENST00000533038 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
Frame-shift | ENST00000360355 | ENST00000278550 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
5CDS-intron | ENST00000360355 | ENST00000533038 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
intron-3CDS | ENST00000480887 | ENST00000278550 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
intron-intron | ENST00000480887 | ENST00000533038 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
5UTR-3CDS | ENST00000530604 | ENST00000278550 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
5UTR-intron | ENST00000530604 | ENST00000533038 | RSF1 | chr11 | 77531574 | - | TENM4 | chr11 | 78449615 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000308488 | RSF1 | chr11 | 77436590 | - | ENST00000278550 | TENM4 | chr11 | 78567223 | - | 13318 | 1036 | 303 | 8090 | 2595 |
ENST00000360355 | RSF1 | chr11 | 77436590 | - | ENST00000278550 | TENM4 | chr11 | 78567223 | - | 13042 | 760 | 120 | 7814 | 2564 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000308488 | ENST00000278550 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - | 0.001188577 | 0.9988115 |
ENST00000360355 | ENST00000278550 | RSF1 | chr11 | 77436590 | - | TENM4 | chr11 | 78567223 | - | 0.000990299 | 0.9990097 |
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Fusion Genomic Features for RSF1-TENM4 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for RSF1-TENM4 |
Go to FGviewer for the breakpoints of chr11:77436590-chr11:78567223 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 17_84 | 244.33333333333334 | 1442.0 | Domain | Note=DDT |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 17_84 | 213.33333333333334 | 1411.0 | Domain | Note=DDT |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 562_593 | 418.3333333333333 | 2770.0 | Domain | EGF-like 1 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 594_624 | 418.3333333333333 | 2770.0 | Domain | EGF-like 2 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 626_658 | 418.3333333333333 | 2770.0 | Domain | EGF-like 3 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 659_690 | 418.3333333333333 | 2770.0 | Domain | EGF-like 4 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 692_725 | 418.3333333333333 | 2770.0 | Domain | EGF-like 5 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 726_757 | 418.3333333333333 | 2770.0 | Domain | EGF-like 6 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 758_787 | 418.3333333333333 | 2770.0 | Domain | EGF-like 7 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 788_831 | 418.3333333333333 | 2770.0 | Domain | EGF-like 8 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1216_1259 | 418.3333333333333 | 2770.0 | Repeat | Note=NHL 1 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1264_1308 | 418.3333333333333 | 2770.0 | Repeat | Note=NHL 2 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1334_1378 | 418.3333333333333 | 2770.0 | Repeat | Note=NHL 3 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1393_1444 | 418.3333333333333 | 2770.0 | Repeat | Note=NHL 4 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1523_1566 | 418.3333333333333 | 2770.0 | Repeat | Note=NHL 5 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1576_1595 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 1 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1612_1632 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 2 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1675_1694 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 3 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1695_1717 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 4 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1887_1906 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 5 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1928_1946 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 6 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1947_1967 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 7 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1974_1991 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 8 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1992_2013 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 9 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2014_2031 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 10 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2034_2054 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 11 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2057_2077 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 12 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2085_2104 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 13 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2110_2127 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 14 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2128_2154 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 15 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2156_2169 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 16 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2170_2193 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 17 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2196_2216 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 18 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2217_2237 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 19 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2239_2259 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 20 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2271_2291 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 21 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2293_2313 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 22 | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 2339_2380 | 418.3333333333333 | 2770.0 | Repeat | Note=YD 23 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 942_1012 | 244.33333333333334 | 1442.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 942_1012 | 213.33333333333334 | 1411.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 942_1012 | 0 | 1190.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 1080_1083 | 244.33333333333334 | 1442.0 | Compositional bias | Note=Poly-Ala |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 1146_1243 | 244.33333333333334 | 1442.0 | Compositional bias | Note=Arg-rich |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 1286_1292 | 244.33333333333334 | 1442.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 1419_1424 | 244.33333333333334 | 1442.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 226_372 | 244.33333333333334 | 1442.0 | Compositional bias | Note=Glu-rich |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 875_884 | 244.33333333333334 | 1442.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 1080_1083 | 213.33333333333334 | 1411.0 | Compositional bias | Note=Poly-Ala |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 1146_1243 | 213.33333333333334 | 1411.0 | Compositional bias | Note=Arg-rich |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 1286_1292 | 213.33333333333334 | 1411.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 1419_1424 | 213.33333333333334 | 1411.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 226_372 | 213.33333333333334 | 1411.0 | Compositional bias | Note=Glu-rich |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 875_884 | 213.33333333333334 | 1411.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 1080_1083 | 0 | 1190.0 | Compositional bias | Note=Poly-Ala |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 1146_1243 | 0 | 1190.0 | Compositional bias | Note=Arg-rich |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 1286_1292 | 0 | 1190.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 1419_1424 | 0 | 1190.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 226_372 | 0 | 1190.0 | Compositional bias | Note=Glu-rich |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 875_884 | 0 | 1190.0 | Compositional bias | Note=Poly-Glu |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 17_84 | 0 | 1190.0 | Domain | Note=DDT |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000308488 | - | 5 | 16 | 891_941 | 244.33333333333334 | 1442.0 | Zinc finger | PHD-type |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000360355 | - | 4 | 15 | 891_941 | 213.33333333333334 | 1411.0 | Zinc finger | PHD-type |
Hgene | RSF1 | chr11:77436590 | chr11:78567223 | ENST00000480887 | - | 1 | 11 | 891_941 | 0 | 1190.0 | Zinc finger | PHD-type |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 179_182 | 418.3333333333333 | 2770.0 | Compositional bias | Note=Poly-Pro | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1_341 | 418.3333333333333 | 2770.0 | Domain | Teneurin N-terminal | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 1_345 | 418.3333333333333 | 2770.0 | Topological domain | Cytoplasmic | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 367_2769 | 418.3333333333333 | 2770.0 | Topological domain | Extracellular | |
Tgene | TENM4 | chr11:77436590 | chr11:78567223 | ENST00000278550 | 9 | 34 | 346_366 | 418.3333333333333 | 2770.0 | Transmembrane | Helical |
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Fusion Gene Sequence for RSF1-TENM4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000308488_ENST00000278550_TCGA-BH-A0EB-01A_RSF1_chr11_77436590_-_TENM4_chr11_78567223_length(transcript)=13318nt_BP=1036nt TTGTTTTCATTCCCCCTGTCACACGAGGCAGTGGCAAGCCCGAAGGGGAGGAGAGAAGGGGGCGGAAAGAGGGCGGAAAGTGAAAGGCGC CGAGGGCCGCTCTGTCTCCCGTCTGACTCGGTTCTCGACTGCTCCGGGCCGCCGATGTATTGTGGGATCGCGGAGCCGTCCCTGAGACGC TGGGATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCC CCCATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCG TGCCCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGG GTGCTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGC AAATCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGATATGCCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAG GGCTATCTTGAAATGAGTGTTGAATGCAAACTAGCACTCTTAAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAAT ATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAA GATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGAAATCGAAACGAGTTGGCT GAGACTCTTGCACTCCTGAAAGCACAAATTGATCCTGTACTATTGAAAAACTCTAGCCAACAAGACAACTCTTCTCGGGAAAGTCCCAGC TTAGAGGATGAGGAGACTAAAAAAGAGGAAGAAACACCTAAACAAGGAAAGCCCAGTAGTTTCTTTCCAGAGGACAGTTTCATAGATTCT GGAGAAATTGATGTGGGAAGGCGAGCTTCCCAGAAGATTCCTCCTGGCACTTTCTGGAGATCTCAAGTGTTCATAGACCATCCTGTGCAT CTGAAATTCAATGTGTCTCTGGGAAAGGCAGCCCTGGTTGGCATTTATGGCAGAAAAGGCCTCCCTCCTTCACATACACAGTTTGACTTT GTGGAGCTGCTGGATGGCAGGAGGCTCCTAACCCAGGAGGCGCGGAGCCTAGAGGGGACCCCGCGCCAGTCTCGGGGAACTGTGCCCCCC TCCAGCCATGAGACAGGCTTCATCCAGTATTTGGATTCAGGAATCTGGCACTTGGCTTTTTACAATGACGGAAAGGAGTCAGAAGTGGTT TCCTTTCTCACCACTGCCATTGAGTCGGTGGATAACTGCCCCAGCAACTGCTATGGCAATGGTGACTGCATCTCTGGGACCTGCCACTGC TTCCTGGGTTTCCTGGGCCCCGACTGTGGCAGAGCCTCCTGCCCCGTGCTCTGTAGCGGAAATGGCCAATACATGAAAGGCAGATGCTTG TGCCACAGTGGCTGGAAAGGCGCTGAGTGCGATGTGCCCACCAACCAGTGTATCGATGTGGCCTGCAGCAACCATGGCACCTGCATCACG GGCACCTGCATCTGCAACCCTGGCTACAAGGGCGAGAGCTGTGAGGAAGTGGACTGCATGGACCCCACATGTTCAGGCCGGGGTGTCTGC GTGAGAGGCGAATGCCACTGCTCTGTGGGATGGGGAGGCACCAACTGCGAGACCCCCAGGGCCACATGCTTAGACCAGTGTTCAGGCCAC GGAACCTTCCTCCCGGACACCGGGCTTTGCAGCTGTGACCCAAGCTGGACTGGACACGACTGTTCTATCGAGATCTGTGCTGCCGACTGT GGTGGCCATGGCGTGTGCGTAGGGGGCACCTGCCGCTGCGAGGATGGCTGGATGGGGGCAGCCTGCGACCAGCGGGCCTGCCACCCGCGC TGTGCCGAGCATGGGACCTGCCGCGACGGCAAGTGCGAGTGCAGCCCTGGCTGGAATGGCGAACACTGCACCATCGCTCACTATCTGGAT AGGGTAGTTAAAGAGGGTTGCCCTGGGTTGTGCAATGGCAACGGCAGATGTACCTTAGACCTGAATGGTTGGCACTGCGTCTGCCAGCTG GGCTGGAGAGGAGCTGGCTGTGACACTTCCATGGAGACTGCCTGCGGTGACAGCAAAGACAATGATGGAGATGGCCTGGTGGACTGCATG GACCCTGACTGCTGCCTCCAGCCCCTGTGCCATATCAACCCGCTGTGCCTTGGCTCCCCTAACCCTCTGGACATCATCCAGGAGACACAG GTCCCTGTGTCACAGCAGAACCTACACTCCTTCTATGACCGCATCAAGTTCCTCGTGGGCAGGGACAGCACGCACATAATCCCCGGGGAG AACCCCTTTGATGGAGGGCATGCTTGTGTTATTCGTGGCCAAGTGATGACATCAGATGGAACCCCCCTGGTTGGTGTGAACATCAGTTTT GTCAATAACCCTCTCTTTGGATATACAATCAGCAGGCAAGATGGCAGCTTTGACTTGGTGACAAATGGCGGCATCTCCATCATCCTGCGG TTCGAGCGGGCACCTTTCATCACACAGGAGCACACCCTGTGGCTGCCATGGGATCGCTTCTTTGTCATGGAAACCATCATCATGAGACAT GAGGAGAATGAGATTCCCAGCTGTGACCTGAGCAATTTTGCCCGCCCCAACCCAGTCGTCTCTCCATCCCCACTGACGTCCTTCGCCAGC TCCTGTGCAGAGAAAGGCCCCATTGTGCCGGAAATTCAGGCTTTGCAGGAGGAAATCTCTATCTCTGGCTGCAAGATGAGGCTGAGCTAC CTGAGCAGCCGGACCCCTGGCTACAAATCTGTCCTGAGGATCAGCCTCACCCACCCGACCATCCCCTTCAACCTCATGAAGGTGCACCTC ATGGTAGCGGTGGAGGGCCGCCTCTTCAGGAAGTGGTTCGCTGCAGCCCCAGACCTGTCCTATTATTTCATTTGGGACAAGACAGACGTC TACAACCAGAAGGTGTTTGGGCTTTCAGAAGCCTTTGTTTCCGTGGGTTATGAATATGAATCCTGCCCAGATCTAATCCTGTGGGAAAAA AGAACAACAGTGCTGCAGGGCTATGAAATTGACGCGTCCAAGCTTGGAGGATGGAGCCTAGACAAACATCATGCCCTCAACATTCAAAGT GGCATCCTGCACAAAGGGAATGGGGAGAACCAGTTTGTGTCTCAGCAGCCTCCTGTCATTGGGAGCATCATGGGCAATGGGCGCCGGAGA AGCATCTCCTGCCCCAGCTGCAACGGCCTTGCTGACGGCAACAAGCTCCTGGCCCCAGTGGCCCTCACCTGTGGCTCTGACGGGAGCCTC TATGTGGGTGATTTCAACTACATTAGAAGGATCTTCCCCTCTGGAAATGTCACCAACATCCTAGAGCTGAGAAATAAAGATTTCAGACAT AGTCACAGTCCAGCACACAAATACTACCTGGCCACAGACCCCATGAGTGGGGCCGTCTTCCTTTCTGACAGCAACAGCCGGCGGGTCTTT AAAATCAAGTCCACTGTGGTGGTGAAGGACCTTGTCAAGAACTCTGAGGTGGTTGCGGGGACAGGTGACCAGTGCCTCCCCTTTGATGAC ACTCGCTGCGGGGATGGTGGGAAGGCCACAGAAGCCACACTCACCAATCCCAGGGGCATTACAGTGGACAAGTTTGGGCTGATCTACTTC GTGGATGGCACCATGATCAGACGCATCGATCAGAATGGGATCATCTCCACCCTGCTCGGCTCTAATGATCTCACATCAGCCCGGCCACTC AGCTGTGATTCTGTCATGGATATTTCCCAGGTTCACCTGGAGTGGCCCACAGACTTAGCCATCAACCCAATGGACAACTCACTTTATGTC CTCGACAACAATGTGGTCCTGCAAATCTCTGAAAACCACCAGGTGCGCATTGTCGCCGGGAGGCCCATGCACTGCCAGGTCCCTGGCATT GACCACTTCCTGCTAAGCAAGGTGGCCATCCACGCAACCCTGGAGTCAGCCACCGCTTTGGCTGTTTCACACAATGGGGTCCTGTATATT GCTGAGACTGATGAGAAAAAGATCAACCGCATCAGGCAGGTCACCACTAGTGGAGAGATCTCACTCGTTGCTGGGGCCCCCAGTGGCTGT GACTGTAAAAATGATGCCAACTGTGATTGTTTTTCTGGAGACGATGGTTATGCCAAGGATGCAAAGTTAAATACCCCATCTTCCTTGGCT GTGTGTGCTGATGGGGAGCTCTACGTGGCCGACCTTGGGAACATCCGAATTCGGTTTATCCGGAAGAACAAGCCTTTCCTCAACACCCAG AACATGTATGAGCTGTCTTCACCAATTGACCAGGAGCTCTATCTGTTTGATACCACCGGCAAGCACCTGTACACCCAAAGCCTGCCCACA GGAGACTACCTGTACAACTTCACCTACACTGGGGACGGCGACATCACACTCATCACAGACAACAATGGCAACATGGTAAATGTCCGCCGA GACTCTACTGGGATGCCCCTCTGGCTGGTGGTCCCAGATGGCCAGGTGTACTGGGTGACCATGGGCACCAACAGTGCACTCAAGAGTGTG ACCACACAAGGACACGAGTTGGCCATGATGACATACCATGGCAATTCCGGCCTTCTGGCAACCAAAAGCAATGAAAACGGATGGACAACA TTTTATGAGTACGACAGCTTTGGCCGCCTGACAAATGTGACCTTCCCTACTGGCCAGGTGAGCAGTTTCCGAAGTGATACAGACAGTTCA GTGCATGTCCAGGTAGAGACCTCCAGCAAGGATGATGTCACCATAACCACCAACCTGTCTGCCTCAGGCGCCTTCTACACACTGCTGCAA GACCAAGTCCGGAACAGCTACTACATCGGGGCCGATGGCTCCTTGCGGCTGCTGCTGGCCAACGGCATGGAGGTGGCGCTGCAGACTGAG CCCCACTTGCTGGCTGGCACCGTCAACCCCACCGTGGGCAAGAGGAATGTCACGCTGCCCATCGACAACGGCCTCAACCTGGTGGAGTGG CGCCAGCGCAAAGAGCAGGCTCGGGGCCAGGTCACTGTCTTTGGGCGCCGGCTGCGGGTTCACAACCGAAATCTCCTATCTCTGGACTTT GATCGCGTAACACGCACAGAGAAGATCTATGATGACCACCGCAAGTTCACCCTTCGGATTCTGTACGACCAGGCGGGGCGGCCCAGCCTC TGGTCACCCAGCAGCAGGCTGAATGGTGTCAACGTGACATACTCCCCTGGGGGTTACATTGCTGGCATCCAGAGGGGCATCATGTCTGAA AGAATGGAATACGACCAGGCGGGCCGCATCACATCCAGGATCTTCGCTGATGGGAAGACATGGAGCTACACATACTTAGAGAAGTCCATG GTGCTGCTACTACACAGCCAGAGGCAGTATATCTTTGAGTTCGACAAGAATGACCGCCTCTCTTCTGTGACGATGCCCAACGTGGCGCGG CAGACACTAGAGACCATCCGCTCAGTGGGCTACTACAGAAACATCTATCAGCCCCCTGAGGGCAATGCCTCAGTCATACAGGACTTCACT GAGGATGGGCACCTCCTTCACACCTTCTACCTGGGCACTGGCCGCAGGGTGATATACAAGTATGGCAAACTGTCAAAGCTGGCAGAGACG CTCTATGACACCACCAAGGTCAGTTTCACCTATGACGAGACGGCAGGCATGCTGAAGACCATCAACCTACAGAATGAGGGCTTCACCTGC ACCATCCGCTACCGTCAGATTGGGCCCCTGATTGACCGACAGATCTTCCGCTTCACTGAGGAAGGCATGGTCAACGCCCGTTTTGACTAC AACTATGACAACAGCTTCCGGGTGACCAGCATGCAGGCTGTGATCAACGAGACCCCACTGCCCATTGATCTCTATCGCTATGATGATGTG TCAGGCAAGACAGAGCAGTTTGGGAAGTTTGGTGTCATTTACTATGACATTAACCAGATCATCACCACAGCTGTCATGACCCACACCAAG CATTTTGATGCATATGGCAGGATGAAGGAAGTGCAGTATGAGATCTTCCGCTCGCTCATGTACTGGATGACCGTCCAGTATGATAACATG GGGCGAGTAGTGAAGAAGGAGCTGAAGGTAGGACCCTACGCCAATACCACTCGCTACTCCTATGAGTATGATGCTGACGGCCAGCTGCAG ACAGTCTCCATCAATGACAAGCCACTCTGGCGCTACAGCTACGACCTCAATGGGAACCTGCACTTACTGAGCCCTGGGAACAGTGCACGG CTCACACCACTACGGTATGACATCCGCGACCGCATCACTCGGCTGGGTGACGTGCAATACAAGATGGATGAGGATGGCTTCCTGAGGCAG CGGGGCGGTGATATCTTTGAGTACAACTCAGCTGGCCTGCTCATCAAGGCCTACAACCGGGCTGGCAGCTGGAGTGTCAGGTACCGCTAC GATGGCCTGGGGCGGCGCGTGTCCAGCAAGAGCAGCCACAGCCACCACCTGCAGTTCTTCTATGCAGACCTGACCAACCCCACCAAGGTC ACCCACCTGTACAACCACTCCAGCTCTGAGATCACCTCCCTCTACTACGACTTGCAAGGACACCTCTTTGCCATGGAGCTGAGCAGTGGT GATGAGTTTTACATAGCTTGTGACAACATCGGGACCCCTCTTGCTGTCTTTAGTGGAACAGGTTTGATGATCAAGCAAATCCTGTACACA GCCTATGGGGAGATCTACATGGATACCAACCCCAACTTTCAGATCATCATAGGCTACCATGGTGGCCTCTATGATCCACTCACCAAGCTT GTCCACATGGGCCGGCGAGATTATGATGTGCTGGCCGGACGCTGGACTAGCCCAGACCACGAGCTGTGGAAGCACCTTAGTAGCAGCAAC GTCATGCCTTTTAATCTCTATATGTTCAAAAACAACAACCCCATCAGCAACTCCCAGGACATCAAGTGCTTCATGACAGATGTTAACAGC TGGCTGCTCACCTTTGGATTCCAGCTACACAACGTGATCCCTGGTTATCCCAAACCAGACATGGATGCCATGGAACCCTCCTACGAGCTC ATCCACACACAGATGAAAACGCAGGAGTGGGACAACAGCAAGTCTATCCTCGGGGTACAGTGTGAAGTACAGAAGCAGCTCAAGGCCTTT GTCACCTTAGAACGGTTTGACCAGCTCTATGGCTCCACAATCACCAGCTGCCAGCAGGCTCCAAAGACCAAGAAGTTTGCATCCAGCGGC TCAGTCTTTGGCAAGGGGGTCAAGTTTGCCTTGAAGGATGGCCGAGTGACCACAGACATCATCAGTGTGGCCAATGAGGATGGGCGAAGG GTTGCTGCCATCTTGAACCATGCCCACTACCTAGAGAACCTGCACTTCACCATTGATGGGGTGGATACCCATTACTTTGTGAAACCAGGA CCTTCAGAAGGTGACCTGGCCATCCTGGGCCTCAGTGGGGGGCGGCGAACCCTGGAGAATGGGGTCAACGTCACTGTGTCCCAGATCAAC ACAGTACTTAATGGCAGGACTAGACGCTACACAGACATCCAGCTCCAGTACGGGGCACTGTGCTTGAACACACGCTACGGGACAACGTTG GATGAGGAGAAGGCACGGGTCCTGGAGCTGGCCCGGCAGAGAGCCGTGCGCCAAGCGTGGGCCCGCGAGCAGCAGAGACTGCGGGAAGGG GAGGAAGGCCTGCGGGCCTGGACAGAGGGGGAGAAGCAGCAGGTGCTGAGCACAGGGCGGGTGCAAGGCTACGACGGCTTTTTCGTGATC TCTGTCGAGCAGTACCCAGAACTGTCAGACAGCGCCAACAACATCCACTTCATGAGACAGAGCGAGATGGGCCGGAGGTGACAGAGAGGA CCAAGGACTTCTTGCCAAAGACAGCTACTCTTTTGTGGCCGCATACCTGACTGTGTTGTACTTTTAAAAAAATGATTTTTTAACAAGTGC AGAAACAAAAAGATACTGGTTGCATTGTAACTCATGCAACATCCTTTTTTTTAGAAAAGAAAAACACAGATTTGGCCTTCGCACATTTTT TGCAAAGAACAGAAGGTATTTTTTTCTGTAGTGTGATCACAATGAAAACTTTATTGTCTTTTGTTCCCTTTTTCCTTGAGGATTTTTCCC TTGTCGTTTGGGGTATGTATCTCCTCTCTGAGATGCATCTCCTGGGGTGTGTCCTCGTCTGTCCCTAGGTACCCAGTGTGATGTGGGACA TGAATGTCTGTGCTAACTTGTCTCATGTGCAACCCTTTCTTCTTCGACTGGGGTCGGGCAGGAGTAAAGGGAGTGATGGGCCAGTACAAC ACCCCTTCCAAGGGGGCCTGGGAGGAGGGTCTGTAGGACCTGAGGCTCCTTGGCAGGGCTCCTGCAGAAGAGTGGTGGATTTCTTCTCAC CTTGTTCTCTGCCTCCAGAGGATCATAGATGGCTTCATCTTGCTCCAGGGAATTTCATGGTGTTGTTCAGCACCTTTTTTAAGCTGCCCC AAACTCCTGTTCAAGCTTTCTATTTTGATGCTGAATGAAACCCCCTACCACTTTTGCAAATCCTGTGTAGTTGTCGGTGCCACCCCCATG CTGGGATAGAGAAAGTGTCTCCCAGGTCCTTTCCCCCAGACCAGTGACATAACATCCTGGGCTCAGAGTCCCATCCTCCCGGGAGGGAAA GCACCCAGGATGCCTGTGATTGGTTGGTCCTCCATGATGTTCCTGTTCATCTCCTCCTTTCTCCCAAAGCCAGATGTGAGAACGAGCACT GCACAGCAAGCCTTCAATGTGGGCACCATGTCCACAGAACAGAAGGCCACCCATGGCAAAGGCATGGCAGTGGTGGCGAGGGCACCAGCC TGCCTTCCGAGGCAAAGCCCTCTCTCTATGACTTTGAGTATCTTCCCTCCACCACTCAGCCGCCACCACTGAGACGTAGGAATGTGGAGG GAGGTGCTTGGTGGCCTTTGATTCTGGAAAAATGCTTAACAAAAAAAGCCAGCCAAAGAGAGGAAGGCATAAGCTAAGCATCCTTCTAAC CAGTTCCCAAAGTCCCATCTGCCTCCATGTACCAGCTGATCGCAGAGCTGGACTGGGGCAGGCTGGGCTTCCAGGAAATTCCTGAAGTTC TGAAACAGCTTCCCCTCTAGAGAAGCCCACCCAATGTGTTTTTTAGTGACAGGAAGAAAGGAGGGAAGAGCTGATGTGGTGTGGCCTGCC CATATCATACAACCCCACCAGGAGCAGGGCAGTTCCCAAGGTGGGTGCCCGTAGATCTGGGAGGCCAGGCTGGCATGATTCCTGTGAAGA ACTGTGCCTGTGTCGTCAGGGAGAGGCCTGAGCCCTCTCAGAAGCAGGGACAGCCCACACCTGAAGAGCACGCCCAAGCTGAGGCAGCAG CCAGCAGGCTGGGGGAGCAGTGAGGGCAGGGGGAGTCACAGCCAGAGCTGGGAGCCCCTTGTTCAAGGATTCCATTCCTGGTTCATCCGC CTAATTACCATTGTCATTACCACTCACAGGAGGCTCTGGGAGATGGGAGGGGAAGCCAAATGCTTCCTTTTAAGCTGGGCTTCTTAGAAA ATGGAACTTTTATGGGTTACATTTACATTAAGTGTGGAAAATGAATTCTGAGTCTGAGCTATTCCCCGTGGAAACCTTGTTGGACTGATA AGCTCATGGCACCTCTATAGCCTTACTCACATAGTCTTCAGAATATTACACAAGTTAATGAAACTGAGAAGGTCTGACTGCATGAGGATC GGAGCAGCATGTAGTCTGGGTTCTGCCTGGCAGAGGGAGGCAACCAAAACTTCTTGGGGAGAGGAGATTTCGCCTTAACGTCATCCCACT GGGATTAGAGGATGTGTTTCGCTAAGTGCTCTTCCTGTTTCCAAAAAAAAAGCCACCCTGCTGCAGCAGTGCGCTTTGGCCTGCTTGTCC ACTGGTTGCCCATTGCCCCTGGATCCAGAGCTCTACTGAGTCAGATACAGTGCTCTGCAGGCCTGCTGTGGGAGGCATGAGCTGGAGATG GGGGCTCCCATCTGGCAGGATCATTCTTGGATGAGATGGAAAACAGTTTGGCCTGAAGAACACAAGTTTTGTCCTCCAGAAGGGACTTAC GCCTCTCAAAATGTACTCTTCATACCAAGGGCCCTTGGGCAAAGTGCTCCTGCCCAGTTGATCAGTCCCATCCTGGCTGCCTGACATCAG TGAAGACCTGCTGGGGATGTCTGCTCAGAGGTCAGGAACGGCATGCGGTCCACAGGAACCAGCTCCCTACGCTTCCCCCACGCCCTGTCC CTCCTCCACAGCCCCCTCCCCAAAGGAATAGGGTGGACTTTTAGGGATCAAAAACAGAATTATTGGGTGTTTCATTTATTTTTTTCTTTC TTTCTTTTTTTTTTCATAGAGATGGGGTCTCACTATGTTGCCCAGGCTGTTCTCAAACTCCTGGCCTCAGGCGATCCACCTTGGCCTCCT GAAGTGCTGGGGTTACAGGTGTGAGCCACTGCGCCTGGACTGAGTGTTTGTTTCTTTAAAGGATCTTATATTTTTCCTGTGCTACATACC ACCACAGCAGCCCAGCTTCTGTGGGGAGAGAAGTTGAAGGATCCCGAAGCTTTAGAAAAAGGATCTCAGCTGTGGCACAGGCAGTGTTAT GCGCCTCACTGCCACATTGGTGCTGTTGTATTGAAGGTGGTGCTTCTGGCCTTGGCCCTTTTGAGTTGGTTTCCATTTGGGCTGCAGGTG ACTCAGTGACTCCCTCCTCAAGCTGTCCTCCTGCTAAGACCAGCAGTCACAAACCCATGGCAAGGGTGAGTGTGAAGGCCTAACCCTGTG CCTATGTAATAGGCTCCAAGCATCGACTCCCATCCTGAGAGGACCGGCCCTTTTGACACTCACCAACCAAATCTGTTCATTCGATAGAGT GACCAGGCCTCCCTCACCTGCCCAGGTGTATGATCCTACAGTTCCTGCCTTCTCTCCTACCCCGCACAGCTGCCAACTGGTCCTACATCC TCAGCCCCTCTGCCACCACCTTAAATAGGACTTTACTGATTCCCCAACTTTGTTTTTTTGTAGGATGAGATTTCCTTTTTATCCCACCCC CCCACACCCCAAACAGACATTGCTGGAGGGCAGACTGGAGGAAGGGGAAGGCATGCAGGTAAATTACTGCCTTGTCAGCCTCTGACCCTC ATCTCTCAGAATTGTTGGCTGAGAATTAACCCAAGGACCACACCAGTGCCTGATTTCTACTTAGGGAGAGAGGATTGGAAACGATCCCTA AGAAACTGACTGAGGGTGAGAATGGCCAGGAGGTGTGTGTCCAAATAACCAGGAGGGGGCACAGAAGATGATGGCAAGGCAGACTGGGCA GTGTTTTGTAGACACAGAACAAAGAATCAGAATTTGAAAAAAGAAGAAAAACAAATCTTCGCAGCTGCAACTTTAAAGTATCACCTTTAT AGATGGCAGGGATTTCCATTATGCAAATGGAATCTAAGATTTCAATGTGAAATCTTAGAATGCAGTTTTACCACTTGCAGTCTTGTATTT GTGGTGGCCATGTGGTGAGGGCGGTGATGCTGAGCTTTCTGCCCAGGAGGAATGAGCTTTCAAGCTCTCAGCAGGGTGTCAGGCTTGGGG ATTTGAGCATCCACTGCTCAAAGTCCAGGCTATTCTCCAGTCCTCACGGCAGCCACTAAGCCCAGGAGCCAGACCTGGCCCGGGGACACA TCTCCTGAGGGATCCCAGAAAGAACCCAGTCTTTCCTTTCCCTTGGGGTCCTTGTTAGAATGAAAACCTCTCTATTTAAGGCACATCATT CCCAGCTAGGTTTATACACTTGTCTATATTTTACTGGAGGAAAGGGAATTAAAAAAGAACTCTGCAGTTCAAGGCCCTTTCATTTAACCT TCCAAAAACAGCAAACTCATTTTAAAGACTCATTGCTGAGGTGATAGAGAGAAACCTTATCCTCTCCAACCTTCACATTCACAAAAACCA TCCTTGTGTACTTGACTGCCCTAGACAGTGGTGACTCTTAGGTTTCATTACGAATGTGGAATATCAGAGTGTGGGAAGGCCCAGGCGAGG GCCAATGTTGTGTTTCTTACCCCCTCTGGAATGCCAAAGGCAAGGTACTAGGTGACCTCCTGGTCCCCAAGAAAATGTGATTTATTCTGA GGGCGAACAGCCAAGGGAGGACTAGTCTGGAGCACGCTCGGCCGTCCTGGCAGGAGCTGAGCCTCAGGTGTCTGGCGGTGCCCCAGCAGC CCTGGATTCACCCAACACCAGAATCCCACTTTTCTAAATCCACCTGTTGTTCTGAGCACCTCTGAACCCGCAGCTTCGGCAAAAGGAGTC TGTACCAAGCTGCTTCTGGATGACCAACACTGGAGACTCTGGCCTTACCATGTGGAAATCATTTTCCTGAAGTCTGGAACTAATTTTGAG AAGTTTTTTTCTCAACACTTTTGTGTTTCTAACACTGTATCTTGACTGTGTAAATACCAACAAGGCTGTAAATAAATGCAGATGTAGATA CCTTCTAGAAAAAAAAAAGCATAAAAACAAAACCAGAAGTGATCCCGTGTAGCCTTCGTTGACAAATAAAGACTATTTTGTGTTTACAGG TGTCTGGTGGCCTTTGCTTGGAGATAAAGGCTTCCTCTTGCCTGTCCCAGCCCCCGAGCCATCCTGGGTTTGCACTTCCCTGCTGGCTGC TATCAGGATGACCTGGGAGAGGACTCAGTCCTAGGCCCCAGGGTCCCTCTAAATCCCTCCAGGCTGCAGCTCTGTCAAGAGGGATGTCCA GAGGGTCTCTAAGACCCTGAAGCTTGACTTTGCAATTGCATGACAGGAATAAATATCACAGCTCCTCTGACATCACTAGTGCAGCGTGGC TCCCCATCCCACTGCTGCCCTCGTTCAGGGACAGGCTGAAGGGGCCAACGAACCCAACCCTCCCAGAGGAGGGAGCCTTGCTCCACCACT >In-frame_ENST00000308488_ENST00000278550_TCGA-BH-A0EB-01A_RSF1_chr11_77436590_-_TENM4_chr11_78567223_length(amino acids)=2595AA_start in transcript=303_stop in transcript=8090 MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY LIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ DDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQGKPSSFFPEDSFIDSGEIDVGRRASQ KIPPGTFWRSQVFIDHPVHLKFNVSLGKAALVGIYGRKGLPPSHTQFDFVELLDGRRLLTQEARSLEGTPRQSRGTVPPSSHETGFIQYL DSGIWHLAFYNDGKESEVVSFLTTAIESVDNCPSNCYGNGDCISGTCHCFLGFLGPDCGRASCPVLCSGNGQYMKGRCLCHSGWKGAECD VPTNQCIDVACSNHGTCITGTCICNPGYKGESCEEVDCMDPTCSGRGVCVRGECHCSVGWGGTNCETPRATCLDQCSGHGTFLPDTGLCS CDPSWTGHDCSIEICAADCGGHGVCVGGTCRCEDGWMGAACDQRACHPRCAEHGTCRDGKCECSPGWNGEHCTIAHYLDRVVKEGCPGLC NGNGRCTLDLNGWHCVCQLGWRGAGCDTSMETACGDSKDNDGDGLVDCMDPDCCLQPLCHINPLCLGSPNPLDIIQETQVPVSQQNLHSF YDRIKFLVGRDSTHIIPGENPFDGGHACVIRGQVMTSDGTPLVGVNISFVNNPLFGYTISRQDGSFDLVTNGGISIILRFERAPFITQEH TLWLPWDRFFVMETIIMRHEENEIPSCDLSNFARPNPVVSPSPLTSFASSCAEKGPIVPEIQALQEEISISGCKMRLSYLSSRTPGYKSV LRISLTHPTIPFNLMKVHLMVAVEGRLFRKWFAAAPDLSYYFIWDKTDVYNQKVFGLSEAFVSVGYEYESCPDLILWEKRTTVLQGYEID ASKLGGWSLDKHHALNIQSGILHKGNGENQFVSQQPPVIGSIMGNGRRRSISCPSCNGLADGNKLLAPVALTCGSDGSLYVGDFNYIRRI FPSGNVTNILELRNKDFRHSHSPAHKYYLATDPMSGAVFLSDSNSRRVFKIKSTVVVKDLVKNSEVVAGTGDQCLPFDDTRCGDGGKATE ATLTNPRGITVDKFGLIYFVDGTMIRRIDQNGIISTLLGSNDLTSARPLSCDSVMDISQVHLEWPTDLAINPMDNSLYVLDNNVVLQISE NHQVRIVAGRPMHCQVPGIDHFLLSKVAIHATLESATALAVSHNGVLYIAETDEKKINRIRQVTTSGEISLVAGAPSGCDCKNDANCDCF SGDDGYAKDAKLNTPSSLAVCADGELYVADLGNIRIRFIRKNKPFLNTQNMYELSSPIDQELYLFDTTGKHLYTQSLPTGDYLYNFTYTG DGDITLITDNNGNMVNVRRDSTGMPLWLVVPDGQVYWVTMGTNSALKSVTTQGHELAMMTYHGNSGLLATKSNENGWTTFYEYDSFGRLT NVTFPTGQVSSFRSDTDSSVHVQVETSSKDDVTITTNLSASGAFYTLLQDQVRNSYYIGADGSLRLLLANGMEVALQTEPHLLAGTVNPT VGKRNVTLPIDNGLNLVEWRQRKEQARGQVTVFGRRLRVHNRNLLSLDFDRVTRTEKIYDDHRKFTLRILYDQAGRPSLWSPSSRLNGVN VTYSPGGYIAGIQRGIMSERMEYDQAGRITSRIFADGKTWSYTYLEKSMVLLLHSQRQYIFEFDKNDRLSSVTMPNVARQTLETIRSVGY YRNIYQPPEGNASVIQDFTEDGHLLHTFYLGTGRRVIYKYGKLSKLAETLYDTTKVSFTYDETAGMLKTINLQNEGFTCTIRYRQIGPLI DRQIFRFTEEGMVNARFDYNYDNSFRVTSMQAVINETPLPIDLYRYDDVSGKTEQFGKFGVIYYDINQIITTAVMTHTKHFDAYGRMKEV QYEIFRSLMYWMTVQYDNMGRVVKKELKVGPYANTTRYSYEYDADGQLQTVSINDKPLWRYSYDLNGNLHLLSPGNSARLTPLRYDIRDR ITRLGDVQYKMDEDGFLRQRGGDIFEYNSAGLLIKAYNRAGSWSVRYRYDGLGRRVSSKSSHSHHLQFFYADLTNPTKVTHLYNHSSSEI TSLYYDLQGHLFAMELSSGDEFYIACDNIGTPLAVFSGTGLMIKQILYTAYGEIYMDTNPNFQIIIGYHGGLYDPLTKLVHMGRRDYDVL AGRWTSPDHELWKHLSSSNVMPFNLYMFKNNNPISNSQDIKCFMTDVNSWLLTFGFQLHNVIPGYPKPDMDAMEPSYELIHTQMKTQEWD NSKSILGVQCEVQKQLKAFVTLERFDQLYGSTITSCQQAPKTKKFASSGSVFGKGVKFALKDGRVTTDIISVANEDGRRVAAILNHAHYL ENLHFTIDGVDTHYFVKPGPSEGDLAILGLSGGRRTLENGVNVTVSQINTVLNGRTRRYTDIQLQYGALCLNTRYGTTLDEEKARVLELA -------------------------------------------------------------- >In-frame_ENST00000360355_ENST00000278550_TCGA-BH-A0EB-01A_RSF1_chr11_77436590_-_TENM4_chr11_78567223_length(transcript)=13042nt_BP=760nt GATCCGCAGAGGAGCCCACTTGAGAGCGCCTCCTGTCGTCTGTAAGGTTGCCTTGCCATCCCTCGGCACCACAACTTCCCCCGCCCCCCC ATCGCCTCCTCCTCCATCCTCCAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGGCTCCTCCGGGCTGCCCGGGTTCGTGC CCCAACTTCGCCGTAGTCTGCTCCTTCTTGGAGCGCTACGGGCCGCTGCTAGACCTGCCTGAGTTGCCGTTCCCTGAGCTGGAGCGGGTG CTGCAGGCGCCGCCGCCGGACGTCGGCAACGGAGAAGTACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGCAAA TCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAGTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATT AATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCAC AATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGAAATCGAAACGAGTTGGCTGAGACT CTTGCACTCCTGAAAGCACAAATTGATCCTGTACTATTGAAAAACTCTAGCCAACAAGACAACTCTTCTCGGGAAAGTCCCAGCTTAGAG GATGAGGAGACTAAAAAAGAGGAAGAAACACCTAAACAAGGAAAGCCCAGTAGTTTCTTTCCAGAGGACAGTTTCATAGATTCTGGAGAA ATTGATGTGGGAAGGCGAGCTTCCCAGAAGATTCCTCCTGGCACTTTCTGGAGATCTCAAGTGTTCATAGACCATCCTGTGCATCTGAAA TTCAATGTGTCTCTGGGAAAGGCAGCCCTGGTTGGCATTTATGGCAGAAAAGGCCTCCCTCCTTCACATACACAGTTTGACTTTGTGGAG CTGCTGGATGGCAGGAGGCTCCTAACCCAGGAGGCGCGGAGCCTAGAGGGGACCCCGCGCCAGTCTCGGGGAACTGTGCCCCCCTCCAGC CATGAGACAGGCTTCATCCAGTATTTGGATTCAGGAATCTGGCACTTGGCTTTTTACAATGACGGAAAGGAGTCAGAAGTGGTTTCCTTT CTCACCACTGCCATTGAGTCGGTGGATAACTGCCCCAGCAACTGCTATGGCAATGGTGACTGCATCTCTGGGACCTGCCACTGCTTCCTG GGTTTCCTGGGCCCCGACTGTGGCAGAGCCTCCTGCCCCGTGCTCTGTAGCGGAAATGGCCAATACATGAAAGGCAGATGCTTGTGCCAC AGTGGCTGGAAAGGCGCTGAGTGCGATGTGCCCACCAACCAGTGTATCGATGTGGCCTGCAGCAACCATGGCACCTGCATCACGGGCACC TGCATCTGCAACCCTGGCTACAAGGGCGAGAGCTGTGAGGAAGTGGACTGCATGGACCCCACATGTTCAGGCCGGGGTGTCTGCGTGAGA GGCGAATGCCACTGCTCTGTGGGATGGGGAGGCACCAACTGCGAGACCCCCAGGGCCACATGCTTAGACCAGTGTTCAGGCCACGGAACC TTCCTCCCGGACACCGGGCTTTGCAGCTGTGACCCAAGCTGGACTGGACACGACTGTTCTATCGAGATCTGTGCTGCCGACTGTGGTGGC CATGGCGTGTGCGTAGGGGGCACCTGCCGCTGCGAGGATGGCTGGATGGGGGCAGCCTGCGACCAGCGGGCCTGCCACCCGCGCTGTGCC GAGCATGGGACCTGCCGCGACGGCAAGTGCGAGTGCAGCCCTGGCTGGAATGGCGAACACTGCACCATCGCTCACTATCTGGATAGGGTA GTTAAAGAGGGTTGCCCTGGGTTGTGCAATGGCAACGGCAGATGTACCTTAGACCTGAATGGTTGGCACTGCGTCTGCCAGCTGGGCTGG AGAGGAGCTGGCTGTGACACTTCCATGGAGACTGCCTGCGGTGACAGCAAAGACAATGATGGAGATGGCCTGGTGGACTGCATGGACCCT GACTGCTGCCTCCAGCCCCTGTGCCATATCAACCCGCTGTGCCTTGGCTCCCCTAACCCTCTGGACATCATCCAGGAGACACAGGTCCCT GTGTCACAGCAGAACCTACACTCCTTCTATGACCGCATCAAGTTCCTCGTGGGCAGGGACAGCACGCACATAATCCCCGGGGAGAACCCC TTTGATGGAGGGCATGCTTGTGTTATTCGTGGCCAAGTGATGACATCAGATGGAACCCCCCTGGTTGGTGTGAACATCAGTTTTGTCAAT AACCCTCTCTTTGGATATACAATCAGCAGGCAAGATGGCAGCTTTGACTTGGTGACAAATGGCGGCATCTCCATCATCCTGCGGTTCGAG CGGGCACCTTTCATCACACAGGAGCACACCCTGTGGCTGCCATGGGATCGCTTCTTTGTCATGGAAACCATCATCATGAGACATGAGGAG AATGAGATTCCCAGCTGTGACCTGAGCAATTTTGCCCGCCCCAACCCAGTCGTCTCTCCATCCCCACTGACGTCCTTCGCCAGCTCCTGT GCAGAGAAAGGCCCCATTGTGCCGGAAATTCAGGCTTTGCAGGAGGAAATCTCTATCTCTGGCTGCAAGATGAGGCTGAGCTACCTGAGC AGCCGGACCCCTGGCTACAAATCTGTCCTGAGGATCAGCCTCACCCACCCGACCATCCCCTTCAACCTCATGAAGGTGCACCTCATGGTA GCGGTGGAGGGCCGCCTCTTCAGGAAGTGGTTCGCTGCAGCCCCAGACCTGTCCTATTATTTCATTTGGGACAAGACAGACGTCTACAAC CAGAAGGTGTTTGGGCTTTCAGAAGCCTTTGTTTCCGTGGGTTATGAATATGAATCCTGCCCAGATCTAATCCTGTGGGAAAAAAGAACA ACAGTGCTGCAGGGCTATGAAATTGACGCGTCCAAGCTTGGAGGATGGAGCCTAGACAAACATCATGCCCTCAACATTCAAAGTGGCATC CTGCACAAAGGGAATGGGGAGAACCAGTTTGTGTCTCAGCAGCCTCCTGTCATTGGGAGCATCATGGGCAATGGGCGCCGGAGAAGCATC TCCTGCCCCAGCTGCAACGGCCTTGCTGACGGCAACAAGCTCCTGGCCCCAGTGGCCCTCACCTGTGGCTCTGACGGGAGCCTCTATGTG GGTGATTTCAACTACATTAGAAGGATCTTCCCCTCTGGAAATGTCACCAACATCCTAGAGCTGAGAAATAAAGATTTCAGACATAGTCAC AGTCCAGCACACAAATACTACCTGGCCACAGACCCCATGAGTGGGGCCGTCTTCCTTTCTGACAGCAACAGCCGGCGGGTCTTTAAAATC AAGTCCACTGTGGTGGTGAAGGACCTTGTCAAGAACTCTGAGGTGGTTGCGGGGACAGGTGACCAGTGCCTCCCCTTTGATGACACTCGC TGCGGGGATGGTGGGAAGGCCACAGAAGCCACACTCACCAATCCCAGGGGCATTACAGTGGACAAGTTTGGGCTGATCTACTTCGTGGAT GGCACCATGATCAGACGCATCGATCAGAATGGGATCATCTCCACCCTGCTCGGCTCTAATGATCTCACATCAGCCCGGCCACTCAGCTGT GATTCTGTCATGGATATTTCCCAGGTTCACCTGGAGTGGCCCACAGACTTAGCCATCAACCCAATGGACAACTCACTTTATGTCCTCGAC AACAATGTGGTCCTGCAAATCTCTGAAAACCACCAGGTGCGCATTGTCGCCGGGAGGCCCATGCACTGCCAGGTCCCTGGCATTGACCAC TTCCTGCTAAGCAAGGTGGCCATCCACGCAACCCTGGAGTCAGCCACCGCTTTGGCTGTTTCACACAATGGGGTCCTGTATATTGCTGAG ACTGATGAGAAAAAGATCAACCGCATCAGGCAGGTCACCACTAGTGGAGAGATCTCACTCGTTGCTGGGGCCCCCAGTGGCTGTGACTGT AAAAATGATGCCAACTGTGATTGTTTTTCTGGAGACGATGGTTATGCCAAGGATGCAAAGTTAAATACCCCATCTTCCTTGGCTGTGTGT GCTGATGGGGAGCTCTACGTGGCCGACCTTGGGAACATCCGAATTCGGTTTATCCGGAAGAACAAGCCTTTCCTCAACACCCAGAACATG TATGAGCTGTCTTCACCAATTGACCAGGAGCTCTATCTGTTTGATACCACCGGCAAGCACCTGTACACCCAAAGCCTGCCCACAGGAGAC TACCTGTACAACTTCACCTACACTGGGGACGGCGACATCACACTCATCACAGACAACAATGGCAACATGGTAAATGTCCGCCGAGACTCT ACTGGGATGCCCCTCTGGCTGGTGGTCCCAGATGGCCAGGTGTACTGGGTGACCATGGGCACCAACAGTGCACTCAAGAGTGTGACCACA CAAGGACACGAGTTGGCCATGATGACATACCATGGCAATTCCGGCCTTCTGGCAACCAAAAGCAATGAAAACGGATGGACAACATTTTAT GAGTACGACAGCTTTGGCCGCCTGACAAATGTGACCTTCCCTACTGGCCAGGTGAGCAGTTTCCGAAGTGATACAGACAGTTCAGTGCAT GTCCAGGTAGAGACCTCCAGCAAGGATGATGTCACCATAACCACCAACCTGTCTGCCTCAGGCGCCTTCTACACACTGCTGCAAGACCAA GTCCGGAACAGCTACTACATCGGGGCCGATGGCTCCTTGCGGCTGCTGCTGGCCAACGGCATGGAGGTGGCGCTGCAGACTGAGCCCCAC TTGCTGGCTGGCACCGTCAACCCCACCGTGGGCAAGAGGAATGTCACGCTGCCCATCGACAACGGCCTCAACCTGGTGGAGTGGCGCCAG CGCAAAGAGCAGGCTCGGGGCCAGGTCACTGTCTTTGGGCGCCGGCTGCGGGTTCACAACCGAAATCTCCTATCTCTGGACTTTGATCGC GTAACACGCACAGAGAAGATCTATGATGACCACCGCAAGTTCACCCTTCGGATTCTGTACGACCAGGCGGGGCGGCCCAGCCTCTGGTCA CCCAGCAGCAGGCTGAATGGTGTCAACGTGACATACTCCCCTGGGGGTTACATTGCTGGCATCCAGAGGGGCATCATGTCTGAAAGAATG GAATACGACCAGGCGGGCCGCATCACATCCAGGATCTTCGCTGATGGGAAGACATGGAGCTACACATACTTAGAGAAGTCCATGGTGCTG CTACTACACAGCCAGAGGCAGTATATCTTTGAGTTCGACAAGAATGACCGCCTCTCTTCTGTGACGATGCCCAACGTGGCGCGGCAGACA CTAGAGACCATCCGCTCAGTGGGCTACTACAGAAACATCTATCAGCCCCCTGAGGGCAATGCCTCAGTCATACAGGACTTCACTGAGGAT GGGCACCTCCTTCACACCTTCTACCTGGGCACTGGCCGCAGGGTGATATACAAGTATGGCAAACTGTCAAAGCTGGCAGAGACGCTCTAT GACACCACCAAGGTCAGTTTCACCTATGACGAGACGGCAGGCATGCTGAAGACCATCAACCTACAGAATGAGGGCTTCACCTGCACCATC CGCTACCGTCAGATTGGGCCCCTGATTGACCGACAGATCTTCCGCTTCACTGAGGAAGGCATGGTCAACGCCCGTTTTGACTACAACTAT GACAACAGCTTCCGGGTGACCAGCATGCAGGCTGTGATCAACGAGACCCCACTGCCCATTGATCTCTATCGCTATGATGATGTGTCAGGC AAGACAGAGCAGTTTGGGAAGTTTGGTGTCATTTACTATGACATTAACCAGATCATCACCACAGCTGTCATGACCCACACCAAGCATTTT GATGCATATGGCAGGATGAAGGAAGTGCAGTATGAGATCTTCCGCTCGCTCATGTACTGGATGACCGTCCAGTATGATAACATGGGGCGA GTAGTGAAGAAGGAGCTGAAGGTAGGACCCTACGCCAATACCACTCGCTACTCCTATGAGTATGATGCTGACGGCCAGCTGCAGACAGTC TCCATCAATGACAAGCCACTCTGGCGCTACAGCTACGACCTCAATGGGAACCTGCACTTACTGAGCCCTGGGAACAGTGCACGGCTCACA CCACTACGGTATGACATCCGCGACCGCATCACTCGGCTGGGTGACGTGCAATACAAGATGGATGAGGATGGCTTCCTGAGGCAGCGGGGC GGTGATATCTTTGAGTACAACTCAGCTGGCCTGCTCATCAAGGCCTACAACCGGGCTGGCAGCTGGAGTGTCAGGTACCGCTACGATGGC CTGGGGCGGCGCGTGTCCAGCAAGAGCAGCCACAGCCACCACCTGCAGTTCTTCTATGCAGACCTGACCAACCCCACCAAGGTCACCCAC CTGTACAACCACTCCAGCTCTGAGATCACCTCCCTCTACTACGACTTGCAAGGACACCTCTTTGCCATGGAGCTGAGCAGTGGTGATGAG TTTTACATAGCTTGTGACAACATCGGGACCCCTCTTGCTGTCTTTAGTGGAACAGGTTTGATGATCAAGCAAATCCTGTACACAGCCTAT GGGGAGATCTACATGGATACCAACCCCAACTTTCAGATCATCATAGGCTACCATGGTGGCCTCTATGATCCACTCACCAAGCTTGTCCAC ATGGGCCGGCGAGATTATGATGTGCTGGCCGGACGCTGGACTAGCCCAGACCACGAGCTGTGGAAGCACCTTAGTAGCAGCAACGTCATG CCTTTTAATCTCTATATGTTCAAAAACAACAACCCCATCAGCAACTCCCAGGACATCAAGTGCTTCATGACAGATGTTAACAGCTGGCTG CTCACCTTTGGATTCCAGCTACACAACGTGATCCCTGGTTATCCCAAACCAGACATGGATGCCATGGAACCCTCCTACGAGCTCATCCAC ACACAGATGAAAACGCAGGAGTGGGACAACAGCAAGTCTATCCTCGGGGTACAGTGTGAAGTACAGAAGCAGCTCAAGGCCTTTGTCACC TTAGAACGGTTTGACCAGCTCTATGGCTCCACAATCACCAGCTGCCAGCAGGCTCCAAAGACCAAGAAGTTTGCATCCAGCGGCTCAGTC TTTGGCAAGGGGGTCAAGTTTGCCTTGAAGGATGGCCGAGTGACCACAGACATCATCAGTGTGGCCAATGAGGATGGGCGAAGGGTTGCT GCCATCTTGAACCATGCCCACTACCTAGAGAACCTGCACTTCACCATTGATGGGGTGGATACCCATTACTTTGTGAAACCAGGACCTTCA GAAGGTGACCTGGCCATCCTGGGCCTCAGTGGGGGGCGGCGAACCCTGGAGAATGGGGTCAACGTCACTGTGTCCCAGATCAACACAGTA CTTAATGGCAGGACTAGACGCTACACAGACATCCAGCTCCAGTACGGGGCACTGTGCTTGAACACACGCTACGGGACAACGTTGGATGAG GAGAAGGCACGGGTCCTGGAGCTGGCCCGGCAGAGAGCCGTGCGCCAAGCGTGGGCCCGCGAGCAGCAGAGACTGCGGGAAGGGGAGGAA GGCCTGCGGGCCTGGACAGAGGGGGAGAAGCAGCAGGTGCTGAGCACAGGGCGGGTGCAAGGCTACGACGGCTTTTTCGTGATCTCTGTC GAGCAGTACCCAGAACTGTCAGACAGCGCCAACAACATCCACTTCATGAGACAGAGCGAGATGGGCCGGAGGTGACAGAGAGGACCAAGG ACTTCTTGCCAAAGACAGCTACTCTTTTGTGGCCGCATACCTGACTGTGTTGTACTTTTAAAAAAATGATTTTTTAACAAGTGCAGAAAC AAAAAGATACTGGTTGCATTGTAACTCATGCAACATCCTTTTTTTTAGAAAAGAAAAACACAGATTTGGCCTTCGCACATTTTTTGCAAA GAACAGAAGGTATTTTTTTCTGTAGTGTGATCACAATGAAAACTTTATTGTCTTTTGTTCCCTTTTTCCTTGAGGATTTTTCCCTTGTCG TTTGGGGTATGTATCTCCTCTCTGAGATGCATCTCCTGGGGTGTGTCCTCGTCTGTCCCTAGGTACCCAGTGTGATGTGGGACATGAATG TCTGTGCTAACTTGTCTCATGTGCAACCCTTTCTTCTTCGACTGGGGTCGGGCAGGAGTAAAGGGAGTGATGGGCCAGTACAACACCCCT TCCAAGGGGGCCTGGGAGGAGGGTCTGTAGGACCTGAGGCTCCTTGGCAGGGCTCCTGCAGAAGAGTGGTGGATTTCTTCTCACCTTGTT CTCTGCCTCCAGAGGATCATAGATGGCTTCATCTTGCTCCAGGGAATTTCATGGTGTTGTTCAGCACCTTTTTTAAGCTGCCCCAAACTC CTGTTCAAGCTTTCTATTTTGATGCTGAATGAAACCCCCTACCACTTTTGCAAATCCTGTGTAGTTGTCGGTGCCACCCCCATGCTGGGA TAGAGAAAGTGTCTCCCAGGTCCTTTCCCCCAGACCAGTGACATAACATCCTGGGCTCAGAGTCCCATCCTCCCGGGAGGGAAAGCACCC AGGATGCCTGTGATTGGTTGGTCCTCCATGATGTTCCTGTTCATCTCCTCCTTTCTCCCAAAGCCAGATGTGAGAACGAGCACTGCACAG CAAGCCTTCAATGTGGGCACCATGTCCACAGAACAGAAGGCCACCCATGGCAAAGGCATGGCAGTGGTGGCGAGGGCACCAGCCTGCCTT CCGAGGCAAAGCCCTCTCTCTATGACTTTGAGTATCTTCCCTCCACCACTCAGCCGCCACCACTGAGACGTAGGAATGTGGAGGGAGGTG CTTGGTGGCCTTTGATTCTGGAAAAATGCTTAACAAAAAAAGCCAGCCAAAGAGAGGAAGGCATAAGCTAAGCATCCTTCTAACCAGTTC CCAAAGTCCCATCTGCCTCCATGTACCAGCTGATCGCAGAGCTGGACTGGGGCAGGCTGGGCTTCCAGGAAATTCCTGAAGTTCTGAAAC AGCTTCCCCTCTAGAGAAGCCCACCCAATGTGTTTTTTAGTGACAGGAAGAAAGGAGGGAAGAGCTGATGTGGTGTGGCCTGCCCATATC ATACAACCCCACCAGGAGCAGGGCAGTTCCCAAGGTGGGTGCCCGTAGATCTGGGAGGCCAGGCTGGCATGATTCCTGTGAAGAACTGTG CCTGTGTCGTCAGGGAGAGGCCTGAGCCCTCTCAGAAGCAGGGACAGCCCACACCTGAAGAGCACGCCCAAGCTGAGGCAGCAGCCAGCA GGCTGGGGGAGCAGTGAGGGCAGGGGGAGTCACAGCCAGAGCTGGGAGCCCCTTGTTCAAGGATTCCATTCCTGGTTCATCCGCCTAATT ACCATTGTCATTACCACTCACAGGAGGCTCTGGGAGATGGGAGGGGAAGCCAAATGCTTCCTTTTAAGCTGGGCTTCTTAGAAAATGGAA CTTTTATGGGTTACATTTACATTAAGTGTGGAAAATGAATTCTGAGTCTGAGCTATTCCCCGTGGAAACCTTGTTGGACTGATAAGCTCA TGGCACCTCTATAGCCTTACTCACATAGTCTTCAGAATATTACACAAGTTAATGAAACTGAGAAGGTCTGACTGCATGAGGATCGGAGCA GCATGTAGTCTGGGTTCTGCCTGGCAGAGGGAGGCAACCAAAACTTCTTGGGGAGAGGAGATTTCGCCTTAACGTCATCCCACTGGGATT AGAGGATGTGTTTCGCTAAGTGCTCTTCCTGTTTCCAAAAAAAAAGCCACCCTGCTGCAGCAGTGCGCTTTGGCCTGCTTGTCCACTGGT TGCCCATTGCCCCTGGATCCAGAGCTCTACTGAGTCAGATACAGTGCTCTGCAGGCCTGCTGTGGGAGGCATGAGCTGGAGATGGGGGCT CCCATCTGGCAGGATCATTCTTGGATGAGATGGAAAACAGTTTGGCCTGAAGAACACAAGTTTTGTCCTCCAGAAGGGACTTACGCCTCT CAAAATGTACTCTTCATACCAAGGGCCCTTGGGCAAAGTGCTCCTGCCCAGTTGATCAGTCCCATCCTGGCTGCCTGACATCAGTGAAGA CCTGCTGGGGATGTCTGCTCAGAGGTCAGGAACGGCATGCGGTCCACAGGAACCAGCTCCCTACGCTTCCCCCACGCCCTGTCCCTCCTC CACAGCCCCCTCCCCAAAGGAATAGGGTGGACTTTTAGGGATCAAAAACAGAATTATTGGGTGTTTCATTTATTTTTTTCTTTCTTTCTT TTTTTTTTCATAGAGATGGGGTCTCACTATGTTGCCCAGGCTGTTCTCAAACTCCTGGCCTCAGGCGATCCACCTTGGCCTCCTGAAGTG CTGGGGTTACAGGTGTGAGCCACTGCGCCTGGACTGAGTGTTTGTTTCTTTAAAGGATCTTATATTTTTCCTGTGCTACATACCACCACA GCAGCCCAGCTTCTGTGGGGAGAGAAGTTGAAGGATCCCGAAGCTTTAGAAAAAGGATCTCAGCTGTGGCACAGGCAGTGTTATGCGCCT CACTGCCACATTGGTGCTGTTGTATTGAAGGTGGTGCTTCTGGCCTTGGCCCTTTTGAGTTGGTTTCCATTTGGGCTGCAGGTGACTCAG TGACTCCCTCCTCAAGCTGTCCTCCTGCTAAGACCAGCAGTCACAAACCCATGGCAAGGGTGAGTGTGAAGGCCTAACCCTGTGCCTATG TAATAGGCTCCAAGCATCGACTCCCATCCTGAGAGGACCGGCCCTTTTGACACTCACCAACCAAATCTGTTCATTCGATAGAGTGACCAG GCCTCCCTCACCTGCCCAGGTGTATGATCCTACAGTTCCTGCCTTCTCTCCTACCCCGCACAGCTGCCAACTGGTCCTACATCCTCAGCC CCTCTGCCACCACCTTAAATAGGACTTTACTGATTCCCCAACTTTGTTTTTTTGTAGGATGAGATTTCCTTTTTATCCCACCCCCCCACA CCCCAAACAGACATTGCTGGAGGGCAGACTGGAGGAAGGGGAAGGCATGCAGGTAAATTACTGCCTTGTCAGCCTCTGACCCTCATCTCT CAGAATTGTTGGCTGAGAATTAACCCAAGGACCACACCAGTGCCTGATTTCTACTTAGGGAGAGAGGATTGGAAACGATCCCTAAGAAAC TGACTGAGGGTGAGAATGGCCAGGAGGTGTGTGTCCAAATAACCAGGAGGGGGCACAGAAGATGATGGCAAGGCAGACTGGGCAGTGTTT TGTAGACACAGAACAAAGAATCAGAATTTGAAAAAAGAAGAAAAACAAATCTTCGCAGCTGCAACTTTAAAGTATCACCTTTATAGATGG CAGGGATTTCCATTATGCAAATGGAATCTAAGATTTCAATGTGAAATCTTAGAATGCAGTTTTACCACTTGCAGTCTTGTATTTGTGGTG GCCATGTGGTGAGGGCGGTGATGCTGAGCTTTCTGCCCAGGAGGAATGAGCTTTCAAGCTCTCAGCAGGGTGTCAGGCTTGGGGATTTGA GCATCCACTGCTCAAAGTCCAGGCTATTCTCCAGTCCTCACGGCAGCCACTAAGCCCAGGAGCCAGACCTGGCCCGGGGACACATCTCCT GAGGGATCCCAGAAAGAACCCAGTCTTTCCTTTCCCTTGGGGTCCTTGTTAGAATGAAAACCTCTCTATTTAAGGCACATCATTCCCAGC TAGGTTTATACACTTGTCTATATTTTACTGGAGGAAAGGGAATTAAAAAAGAACTCTGCAGTTCAAGGCCCTTTCATTTAACCTTCCAAA AACAGCAAACTCATTTTAAAGACTCATTGCTGAGGTGATAGAGAGAAACCTTATCCTCTCCAACCTTCACATTCACAAAAACCATCCTTG TGTACTTGACTGCCCTAGACAGTGGTGACTCTTAGGTTTCATTACGAATGTGGAATATCAGAGTGTGGGAAGGCCCAGGCGAGGGCCAAT GTTGTGTTTCTTACCCCCTCTGGAATGCCAAAGGCAAGGTACTAGGTGACCTCCTGGTCCCCAAGAAAATGTGATTTATTCTGAGGGCGA ACAGCCAAGGGAGGACTAGTCTGGAGCACGCTCGGCCGTCCTGGCAGGAGCTGAGCCTCAGGTGTCTGGCGGTGCCCCAGCAGCCCTGGA TTCACCCAACACCAGAATCCCACTTTTCTAAATCCACCTGTTGTTCTGAGCACCTCTGAACCCGCAGCTTCGGCAAAAGGAGTCTGTACC AAGCTGCTTCTGGATGACCAACACTGGAGACTCTGGCCTTACCATGTGGAAATCATTTTCCTGAAGTCTGGAACTAATTTTGAGAAGTTT TTTTCTCAACACTTTTGTGTTTCTAACACTGTATCTTGACTGTGTAAATACCAACAAGGCTGTAAATAAATGCAGATGTAGATACCTTCT AGAAAAAAAAAAGCATAAAAACAAAACCAGAAGTGATCCCGTGTAGCCTTCGTTGACAAATAAAGACTATTTTGTGTTTACAGGTGTCTG GTGGCCTTTGCTTGGAGATAAAGGCTTCCTCTTGCCTGTCCCAGCCCCCGAGCCATCCTGGGTTTGCACTTCCCTGCTGGCTGCTATCAG GATGACCTGGGAGAGGACTCAGTCCTAGGCCCCAGGGTCCCTCTAAATCCCTCCAGGCTGCAGCTCTGTCAAGAGGGATGTCCAGAGGGT CTCTAAGACCCTGAAGCTTGACTTTGCAATTGCATGACAGGAATAAATATCACAGCTCCTCTGACATCACTAGTGCAGCGTGGCTCCCCA TCCCACTGCTGCCCTCGTTCAGGGACAGGCTGAAGGGGCCAACGAACCCAACCCTCCCAGAGGAGGGAGCCTTGCTCCACCACTGGGCAC >In-frame_ENST00000360355_ENST00000278550_TCGA-BH-A0EB-01A_RSF1_chr11_77436590_-_TENM4_chr11_78567223_length(amino acids)=2564AA_start in transcript=120_stop in transcript=7814 MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKY LIKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDP VLLKNSSQQDNSSRESPSLEDEETKKEEETPKQGKPSSFFPEDSFIDSGEIDVGRRASQKIPPGTFWRSQVFIDHPVHLKFNVSLGKAAL VGIYGRKGLPPSHTQFDFVELLDGRRLLTQEARSLEGTPRQSRGTVPPSSHETGFIQYLDSGIWHLAFYNDGKESEVVSFLTTAIESVDN CPSNCYGNGDCISGTCHCFLGFLGPDCGRASCPVLCSGNGQYMKGRCLCHSGWKGAECDVPTNQCIDVACSNHGTCITGTCICNPGYKGE SCEEVDCMDPTCSGRGVCVRGECHCSVGWGGTNCETPRATCLDQCSGHGTFLPDTGLCSCDPSWTGHDCSIEICAADCGGHGVCVGGTCR CEDGWMGAACDQRACHPRCAEHGTCRDGKCECSPGWNGEHCTIAHYLDRVVKEGCPGLCNGNGRCTLDLNGWHCVCQLGWRGAGCDTSME TACGDSKDNDGDGLVDCMDPDCCLQPLCHINPLCLGSPNPLDIIQETQVPVSQQNLHSFYDRIKFLVGRDSTHIIPGENPFDGGHACVIR GQVMTSDGTPLVGVNISFVNNPLFGYTISRQDGSFDLVTNGGISIILRFERAPFITQEHTLWLPWDRFFVMETIIMRHEENEIPSCDLSN FARPNPVVSPSPLTSFASSCAEKGPIVPEIQALQEEISISGCKMRLSYLSSRTPGYKSVLRISLTHPTIPFNLMKVHLMVAVEGRLFRKW FAAAPDLSYYFIWDKTDVYNQKVFGLSEAFVSVGYEYESCPDLILWEKRTTVLQGYEIDASKLGGWSLDKHHALNIQSGILHKGNGENQF VSQQPPVIGSIMGNGRRRSISCPSCNGLADGNKLLAPVALTCGSDGSLYVGDFNYIRRIFPSGNVTNILELRNKDFRHSHSPAHKYYLAT DPMSGAVFLSDSNSRRVFKIKSTVVVKDLVKNSEVVAGTGDQCLPFDDTRCGDGGKATEATLTNPRGITVDKFGLIYFVDGTMIRRIDQN GIISTLLGSNDLTSARPLSCDSVMDISQVHLEWPTDLAINPMDNSLYVLDNNVVLQISENHQVRIVAGRPMHCQVPGIDHFLLSKVAIHA TLESATALAVSHNGVLYIAETDEKKINRIRQVTTSGEISLVAGAPSGCDCKNDANCDCFSGDDGYAKDAKLNTPSSLAVCADGELYVADL GNIRIRFIRKNKPFLNTQNMYELSSPIDQELYLFDTTGKHLYTQSLPTGDYLYNFTYTGDGDITLITDNNGNMVNVRRDSTGMPLWLVVP DGQVYWVTMGTNSALKSVTTQGHELAMMTYHGNSGLLATKSNENGWTTFYEYDSFGRLTNVTFPTGQVSSFRSDTDSSVHVQVETSSKDD VTITTNLSASGAFYTLLQDQVRNSYYIGADGSLRLLLANGMEVALQTEPHLLAGTVNPTVGKRNVTLPIDNGLNLVEWRQRKEQARGQVT VFGRRLRVHNRNLLSLDFDRVTRTEKIYDDHRKFTLRILYDQAGRPSLWSPSSRLNGVNVTYSPGGYIAGIQRGIMSERMEYDQAGRITS RIFADGKTWSYTYLEKSMVLLLHSQRQYIFEFDKNDRLSSVTMPNVARQTLETIRSVGYYRNIYQPPEGNASVIQDFTEDGHLLHTFYLG TGRRVIYKYGKLSKLAETLYDTTKVSFTYDETAGMLKTINLQNEGFTCTIRYRQIGPLIDRQIFRFTEEGMVNARFDYNYDNSFRVTSMQ AVINETPLPIDLYRYDDVSGKTEQFGKFGVIYYDINQIITTAVMTHTKHFDAYGRMKEVQYEIFRSLMYWMTVQYDNMGRVVKKELKVGP YANTTRYSYEYDADGQLQTVSINDKPLWRYSYDLNGNLHLLSPGNSARLTPLRYDIRDRITRLGDVQYKMDEDGFLRQRGGDIFEYNSAG LLIKAYNRAGSWSVRYRYDGLGRRVSSKSSHSHHLQFFYADLTNPTKVTHLYNHSSSEITSLYYDLQGHLFAMELSSGDEFYIACDNIGT PLAVFSGTGLMIKQILYTAYGEIYMDTNPNFQIIIGYHGGLYDPLTKLVHMGRRDYDVLAGRWTSPDHELWKHLSSSNVMPFNLYMFKNN NPISNSQDIKCFMTDVNSWLLTFGFQLHNVIPGYPKPDMDAMEPSYELIHTQMKTQEWDNSKSILGVQCEVQKQLKAFVTLERFDQLYGS TITSCQQAPKTKKFASSGSVFGKGVKFALKDGRVTTDIISVANEDGRRVAAILNHAHYLENLHFTIDGVDTHYFVKPGPSEGDLAILGLS GGRRTLENGVNVTVSQINTVLNGRTRRYTDIQLQYGALCLNTRYGTTLDEEKARVLELARQRAVRQAWAREQQRLREGEEGLRAWTEGEK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RSF1-TENM4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RSF1-TENM4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RSF1-TENM4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | TENM4 | C0005586 | Bipolar Disorder | 1 | CTD_human |
Tgene | TENM4 | C0005587 | Depression, Bipolar | 1 | CTD_human |
Tgene | TENM4 | C0024713 | Manic Disorder | 1 | CTD_human |
Tgene | TENM4 | C0033975 | Psychotic Disorders | 1 | PSYGENET |
Tgene | TENM4 | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | TENM4 | C0338831 | Manic | 1 | CTD_human |
Tgene | TENM4 | C0349204 | Nonorganic psychosis | 1 | PSYGENET |
Tgene | TENM4 | C4225223 | TREMOR, HEREDITARY ESSENTIAL, 5 | 1 | CTD_human;UNIPROT |