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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:SBNO2-SPOCK1 (FusionGDB2 ID:78881) |
Fusion Gene Summary for SBNO2-SPOCK1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SBNO2-SPOCK1 | Fusion gene ID: 78881 | Hgene | Tgene | Gene symbol | SBNO2 | SPOCK1 | Gene ID | 22904 | 6695 |
| Gene name | strawberry notch homolog 2 | SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 | |
| Synonyms | KIAA0963|SNO|STNO | SPOCK|TESTICAN|TIC1 | |
| Cytomap | 19p13.3 | 5q31.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein strawberry notch homolog 2 | testican-1SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000361757, ENST00000587024, ENST00000438103, | ENST00000394945, ENST00000282223, ENST00000509978, | |
| Fusion gene scores | * DoF score | 29 X 15 X 16=6960 | 7 X 7 X 3=147 |
| # samples | 38 | 7 | |
| ** MAII score | log2(38/6960*10)=-4.19501598240514 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/147*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: SBNO2 [Title/Abstract] AND SPOCK1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | SBNO2(1147308)-SPOCK1(136476383), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | SBNO2 | GO:0071354 | cellular response to interleukin-6 | 25903009 |
| Tgene | SPOCK1 | GO:0010812 | negative regulation of cell-substrate adhesion | 12853036 |
| Tgene | SPOCK1 | GO:0010951 | negative regulation of endopeptidase activity | 14511383 |
| Tgene | SPOCK1 | GO:0010977 | negative regulation of neuron projection development | 12853036 |
| Fusion gene breakpoints across SBNO2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across SPOCK1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | UCEC | TCGA-A5-A0G5-01A | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
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Fusion Gene ORF analysis for SBNO2-SPOCK1 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000361757 | ENST00000394945 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| In-frame | ENST00000361757 | ENST00000282223 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| 5CDS-intron | ENST00000361757 | ENST00000509978 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| In-frame | ENST00000587024 | ENST00000394945 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| In-frame | ENST00000587024 | ENST00000282223 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| 5CDS-intron | ENST00000587024 | ENST00000509978 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| intron-3CDS | ENST00000438103 | ENST00000394945 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| intron-3CDS | ENST00000438103 | ENST00000282223 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| intron-intron | ENST00000438103 | ENST00000509978 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000361757 | SBNO2 | chr19 | 1147308 | - | ENST00000394945 | SPOCK1 | chr5 | 136476383 | - | 4961 | 517 | 345 | 1604 | 419 |
| ENST00000361757 | SBNO2 | chr19 | 1147308 | - | ENST00000282223 | SPOCK1 | chr5 | 136476383 | - | 1646 | 517 | 345 | 1604 | 419 |
| ENST00000587024 | SBNO2 | chr19 | 1147308 | - | ENST00000394945 | SPOCK1 | chr5 | 136476383 | - | 4934 | 490 | 318 | 1577 | 419 |
| ENST00000587024 | SBNO2 | chr19 | 1147308 | - | ENST00000282223 | SPOCK1 | chr5 | 136476383 | - | 1619 | 490 | 318 | 1577 | 419 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000361757 | ENST00000394945 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - | 0.000557769 | 0.99944216 |
| ENST00000361757 | ENST00000282223 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - | 0.007486237 | 0.9925137 |
| ENST00000587024 | ENST00000394945 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - | 0.000543093 | 0.99945694 |
| ENST00000587024 | ENST00000282223 | SBNO2 | chr19 | 1147308 | - | SPOCK1 | chr5 | 136476383 | - | 0.006562856 | 0.9934371 |
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Fusion Genomic Features for SBNO2-SPOCK1 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SBNO2-SPOCK1 |
| Go to FGviewer for the breakpoints of chr19:1147308-chr5:136476383 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | SPOCK1 | chr19:1147308 | chr5:136476383 | ENST00000282223 | 1 | 10 | 130_182 | 77.33333333333333 | 440.0 | Domain | Kazal-like | |
| Tgene | SPOCK1 | chr19:1147308 | chr5:136476383 | ENST00000282223 | 1 | 10 | 310_376 | 77.33333333333333 | 440.0 | Domain | Thyroglobulin type-1 | |
| Tgene | SPOCK1 | chr19:1147308 | chr5:136476383 | ENST00000394945 | 2 | 11 | 130_182 | 77.33333333333333 | 440.0 | Domain | Kazal-like | |
| Tgene | SPOCK1 | chr19:1147308 | chr5:136476383 | ENST00000394945 | 2 | 11 | 310_376 | 77.33333333333333 | 440.0 | Domain | Thyroglobulin type-1 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | SBNO2 | chr19:1147308 | chr5:136476383 | ENST00000361757 | - | 4 | 32 | 1234_1294 | 93.0 | 1367.0 | Compositional bias | Note=Pro-rich |
| Hgene | SBNO2 | chr19:1147308 | chr5:136476383 | ENST00000361757 | - | 4 | 32 | 183_195 | 93.0 | 1367.0 | Compositional bias | Note=Poly-Glu |
| Hgene | SBNO2 | chr19:1147308 | chr5:136476383 | ENST00000438103 | - | 1 | 29 | 1234_1294 | 0 | 1310.0 | Compositional bias | Note=Pro-rich |
| Hgene | SBNO2 | chr19:1147308 | chr5:136476383 | ENST00000438103 | - | 1 | 29 | 183_195 | 0 | 1310.0 | Compositional bias | Note=Poly-Glu |
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Fusion Gene Sequence for SBNO2-SPOCK1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000361757_ENST00000394945_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(transcript)=4961nt_BP=517nt GTGCGCGGGGCCCCCAAGATGGCGCCCGAAACCCGGAAGTGAGCGGCGGCAGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCG CCCGGCCGGACCCGGGCCCGAGATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCG GGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGA TTACCCGCAGCATGAACCCCCGCCGGCGGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAGAGCGCCATGCTGCACTGCCCCTACTGGAA CACCTTCTCGCTGCCGCCATACCCTGCCTTCTCCAGCGACAGCCGCCCGTTCATGAGCTCCGCCTCCTTCCTCGGCAGCCAGCCCTGCCC AGACACCAGCTATGCCCCCGTGGCCACCGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAGCCCTGGACCCATCCAAGGACCCC TGCCTGAAGGTAAAATGCAGCCCTCACAAAGTGTGTGTGACCCAGGACTACCAGACCGCCCTGTGTGTCAGCCGCAAGCACCTGCTCCCC AGGCAAAAGAAGGGGAACGTGGCCCAGAAACACTGGGTTGGACCTTCGAATTTGGTCAAGTGCAAGCCCTGTCCCGTGGCACAGTCAGCC ATGGTCTGCGGCTCAGATGGCCACTCCTACACATCCAAGTGCAAATTGGAGTTCCATGCTTGTTCTACTGGCAAAAGCCTCGCCACCCTC TGTGATGGGCCCTGTCCCTGTCTCCCAGAGCCTGAGCCACCAAAGCACAAGGCAGAAAGGAGTGCCTGCACAGACAAGGAGTTGCGGAAC CTTGCCTCCCGGCTGAAGGATTGGTTTGGAGCTCTCCACGAGGATGCGAACAGAGTCATCAAGCCCACCAGCTCCAACACAGCCCAAGGC AGGTTTGACACTAGCATCCTGCCCATCTGCAAGGACTCCCTGGGCTGGATGTTCAACAAGTTGGACATGAACTATGACCTCCTGCTTGAC CCTTCAGAGATCAATGCCATCTACCTGGATAAGTACGAGCCCTGTATCAAGCCTCTTTTCAACTCGTGTGACTCCTTCAAGGATGGCAAG CTTTCTAACAATGAGTGGTGCTACTGCTTCCAGAAGCCTGGAGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTGAGTAAG GGGAAAAGCCTGTTGGGGGCCTTCATACCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACACAGTGCCACGGCAGCACGGGGCAGTGC TGGTGTGTGGACAAATATGGGAATGAGTTGGCTGGCTCCAGGAAACAGGGTGCTGTGAGCTGTGAAGAGGAGCAGGAAACCTCAGGGGAT TTTGGCAGTGGTGGGTCCGTGGTCCTGCTGGATGACCTAGAATATGAACGGGAGCTGGGACCAAAGGACAAAGAGGGGAAGCTGAGGGTG CACACCCGAGCCGTGACAGAGGATGATGAGGATGAGGATGATGACAAAGAGGATGAGGTCGGGTACATATGGTAGTGCCCACAAGAAAGA GGACACAAGTTTTGCACAAAATTGCAAGTCACTTCCTATTCCTGCATTTGTATCTAAGACTCCAAGGCACCAAGGTCTCTTCTCCATTGT TGCTCTCTATACCCGACCTAAGGTTTGGAAGACAACTGCTTGTTCCCAGAGGATTCTGATTTTGCATATGTTTGTATGGGAGAAAGGGTG TTGTGTTTTTTTTTTGTTGTTGTTTATTTTTTGGATAGGGAAGTCATTGGCTTAATTAGAGCCTCCTTCCTTTCTGTGAGATTTTTCCAA CAAGCATGTGATTTACGTGGAATTCTGACAGTGCAGGGAGCCCCAACCCTCTTAAATGTCAAAGACCCTTTTTGATTACCCACACTGGTG GTTATTACAGCATGGTTCCCAGCCTTACAGTGTCTAAGTGCTTCTCTTGTGTCCTGTAGATGTTGTGAAAAAGAAAAAAACAAAAAATAC ACCACACTGTACTTTTTCCCCCTGCCCCCGTTACTGCCGGTGATTATTATTAAAAATTAGTTTTTTTCACATCATTATATCTGGCTTCCT ATAAACAACAGCCTTAATTCAGTCAAGACTCCCTTTGGGGAATTCATTTTATTAAAAATTGGTGTCTGGATACTTCCCTGTACATGCATA AATATGCATGCATGTACAGAAAGACTGTATGTGTGTGCCTTGCACACACACCCATACCTCTCAGAAAAAGTGTTTGGGTATCTTAAAAAC TCGAAAAACAATGATAAATTTCTCAGCTTGTCCAGACCTGGAACAAAATTTCTGGAATAAGAAATTTGTATTAAAGTCCTTTTTTGCACT AACAGTTGGCTCTTGTAGCCTGCAGGCTGAGGAAGTCTCTTCTCTGTGCATCAGCAGAGTTACTGAAAGCCTCTGATTGAGAAAAAACCT CCGTCTGCCTAAATCACTTTTCTCGCAGAAGCCATGCGACTCCCACACGACACGGGCAGCTTCACAAGCCATCTCTTTCATTTCTGCTTG AAGCCCCTTGGCTGCAGCAATCCTGTCTGCCATAGGTTTCTTCCTTCCTTACCTACTCAAGGGCTTTTTCTAAGGCATGCACACATATCT CCTGTTCTCTGAGAGTACCATGGTGTTCCTTAAAAGAAGAAAATTTCTAATTCTGAACTCAATGTTTTGCTTTTACTCCCTTTCTACTGA CAAATCATGATAAGGGCACAAAAGCTGTACAGATTTTTTTTTTTAACCACTCAATCCCAAATGGAGGCCTACAAAGAACATCGTAATAAC ACATGGAAGCAAACCCTGGGTTTTTAAGAGCAAATTCTGTCCCCCCCTCACTCCCCCAAGTGACAAGATACTAATGAAGAAAGTTCTTCA CCATAGTGTTTGTTTTAACTAAACTCATTGGAGTCTAGTTCCAAATTTGGTAGGGTCATCATCTCTACATTCCTTAGGATTTCTCTCCCT ATCAAGCTGGCCCAGATACAAGTACCAAACAGTAGTCTCTGAAGTTCCCCCATTTCCTTCAGTACCAGTCTATAAGCTACTGTCCGCCAC TGATTTTCATTTATCAGGGTGTCCTAATCAGAATCAGCCACCCAAGCAAGCCTCTCTGGCCCACATATCTATCTCTTGCCTTCCCCCATG AACTTCAGCCTGTCCACACAAAAGCCACATAAACTCAAGCAAGAAATATGTTCAGCCAAAACATGATTATAGTGGCAGCTGACCAATCCC CCATCCCAAATTGACCATTTAGATGTACCAACTCACCTTAAATTAGCATGTTCCAATCCAGTCGGCATTGCCTGAATACAGTAGCATCAT ACCTATAGTTGGTCTTAGATAAGAAATGAACTACTTGATATAGCAAAGTCCTTTGGCTTCGTAAATAACCCTGAGGTTTTGTACTTACTT TCCCCATAGGAAGACAGACCATAGGCAAACTCTGTTTTGGGATCTCAACTCCATCACCTTTGTTTCAATATTTTTTTTCTCTCTTGAACA AAACTGAGATAATTTAGAAAACAGGTGCTTAATTGCAATAAAATTACTATGAAGTATATTAAAAATCACGACATTGTAAAATCTCACTTT AGATCATCAAAGAAAACCATTGTTACTATCTCCTTTGAGCTTAGGAAAATGTACAAGAGAACAAATTAAAATTGAAAAATTGATTTCACT TAGAAAAACTTCTAGGAACAGGGTGAACCACTGATTTTAATTTGCCTAATTATCTTATGACAAGTATCAAATTAAGATGACACTTAAAGA TCCTTAGCATTAACTTAATGATGGAGAAGAGTGCTCAATAGACAGTTCCCAGTAAGGTAATGAGATGCCATTTTCAGAGACATTCTAAGA AGATATTTTGATTCATTAAAACATTAAATAAAAAGCCCTCCTCAGATTGGAACCCCCAAATCGATGGAGCCACATTAATAATACTTTTCA TGCCTCACTTTGACATGACAGCATTCGATTTTTTTAAAGATCTTTAATACTTTCCATGAGTACTAAAGATTGTAATGAGTTACCTTATCC TTAGAAGTAGAATGTTTGCTTTCTTCTTCTTGGAAATAGTCCTCCAAAAAGTCCACTTGTACCAGTGACAAGAAGTCACTTGTATAGTGA CCAAGTACACATAAAATACTGATTATAAAAATATTGTAATAAACCACTTCCTCATTTGATACAGGTATTAAGCTGAATCCTCACTAATTC ACTTTTGAAAAGTTCTTAATGAACAGTTTTATTCTTATTCCATGAACAGCTCTTTTAATACAATTTCCTTGGTATCCAACTTAAATCCCA GAATTTTGTTCCACCATGGTTAGTTATTTGCCATATGAATGTATTCTTGTTTCTACCAATATTCTAGGCATGAGAATACCTTAATACTGA GTTGGAGATTTTGTATCTGTTTCTCCTCCTTTACGCCCATTTTCCTACCCACAGCAGCAAATGACAACGTGTCTGTCCAGGTCTGTCCCC CTGCTCATCCCAGGATGCCACTCACATTTTTTTCTTCTTGTTACCTTGACCACGCTGTACAGTAACATCCAAGAGCCCATTCTACAGTGG GTGGTTTTGGTCTTTTTATAACTTTTTCTCAAAGTCACTGATGTTTGTTCCTGTTAAATGTATAGCATTGTAATGAGAGCCCATCAAATC CTGAGTGTCAGTTTGTTGTCCCTATTGTAGATGAAATAGTGATGTAGCAAAAACCTAGTAAATTCTGAATGCTTTTCCACGTAGACTTAT CTGGAATGTGAACACAACTCTTTGGTTAATAGTAAATGCTTAACTGTAGTCCTGAGTAGGTGCATTTCTGTCTGTCTCAATAAATTTTAC >In-frame_ENST00000361757_ENST00000394945_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(amino acids)=419AA_start in transcript=345_stop in transcript=1604 MPLLEHLLAAAIPCLLQRQPPVHELRLLPRQPALPRHQLCPRGHRLQLATKDLRLCSALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSR KHLLPRQKKGNVAQKHWVGPSNLVKCKPCPVAQSAMVCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTD KELRNLASRLKDWFGALHEDANRVIKPTSSNTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPCIKPLFNSCDS FKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQ -------------------------------------------------------------- >In-frame_ENST00000361757_ENST00000282223_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(transcript)=1646nt_BP=517nt GTGCGCGGGGCCCCCAAGATGGCGCCCGAAACCCGGAAGTGAGCGGCGGCAGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCG CCCGGCCGGACCCGGGCCCGAGATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCG GGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGA TTACCCGCAGCATGAACCCCCGCCGGCGGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAGAGCGCCATGCTGCACTGCCCCTACTGGAA CACCTTCTCGCTGCCGCCATACCCTGCCTTCTCCAGCGACAGCCGCCCGTTCATGAGCTCCGCCTCCTTCCTCGGCAGCCAGCCCTGCCC AGACACCAGCTATGCCCCCGTGGCCACCGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAGCCCTGGACCCATCCAAGGACCCC TGCCTGAAGGTAAAATGCAGCCCTCACAAAGTGTGTGTGACCCAGGACTACCAGACCGCCCTGTGTGTCAGCCGCAAGCACCTGCTCCCC AGGCAAAAGAAGGGGAACGTGGCCCAGAAACACTGGGTTGGACCTTCGAATTTGGTCAAGTGCAAGCCCTGTCCCGTGGCACAGTCAGCC ATGGTCTGCGGCTCAGATGGCCACTCCTACACATCCAAGTGCAAATTGGAGTTCCATGCTTGTTCTACTGGCAAAAGCCTCGCCACCCTC TGTGATGGGCCCTGTCCCTGTCTCCCAGAGCCTGAGCCACCAAAGCACAAGGCAGAAAGGAGTGCCTGCACAGACAAGGAGTTGCGGAAC CTTGCCTCCCGGCTGAAGGATTGGTTTGGAGCTCTCCACGAGGATGCGAACAGAGTCATCAAGCCCACCAGCTCCAACACAGCCCAAGGC AGGTTTGACACTAGCATCCTGCCCATCTGCAAGGACTCCCTGGGCTGGATGTTCAACAAGTTGGACATGAACTATGACCTCCTGCTTGAC CCTTCAGAGATCAATGCCATCTACCTGGATAAGTACGAGCCCTGTATCAAGCCTCTTTTCAACTCGTGTGACTCCTTCAAGGATGGCAAG CTTTCTAACAATGAGTGGTGCTACTGCTTCCAGAAGCCTGGAGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTGAGTAAG GGGAAAAGCCTGTTGGGGGCCTTCATACCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACACAGTGCCACGGCAGCACGGGGCAGTGC TGGTGTGTGGACAAATATGGGAATGAGTTGGCTGGCTCCAGGAAACAGGGTGCTGTGAGCTGTGAAGAGGAGCAGGAAACCTCAGGGGAT TTTGGCAGTGGTGGGTCCGTGGTCCTGCTGGATGACCTAGAATATGAACGGGAGCTGGGACCAAAGGACAAAGAGGGGAAGCTGAGGGTG CACACCCGAGCCGTGACAGAGGATGATGAGGATGAGGATGATGACAAAGAGGATGAGGTCGGGTACATATGGTAGTGCCCACAAGAAAGA >In-frame_ENST00000361757_ENST00000282223_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(amino acids)=419AA_start in transcript=345_stop in transcript=1604 MPLLEHLLAAAIPCLLQRQPPVHELRLLPRQPALPRHQLCPRGHRLQLATKDLRLCSALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSR KHLLPRQKKGNVAQKHWVGPSNLVKCKPCPVAQSAMVCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTD KELRNLASRLKDWFGALHEDANRVIKPTSSNTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPCIKPLFNSCDS FKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQ -------------------------------------------------------------- >In-frame_ENST00000587024_ENST00000394945_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(transcript)=4934nt_BP=490nt GAAACCCGGAAGTGAGCGGCGGCAGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGCCCGAGATCAT GATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCC CGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGATTACCCGCAGCATGAACCCCCGCCGGC GGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAGAGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGC CTTCTCCAGCGACAGCCGCCCGTTCATGAGCTCCGCCTCCTTCCTCGGCAGCCAGCCCTGCCCAGACACCAGCTATGCCCCCGTGGCCAC CGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTAAAATGCAGCCCTCAC AAAGTGTGTGTGACCCAGGACTACCAGACCGCCCTGTGTGTCAGCCGCAAGCACCTGCTCCCCAGGCAAAAGAAGGGGAACGTGGCCCAG AAACACTGGGTTGGACCTTCGAATTTGGTCAAGTGCAAGCCCTGTCCCGTGGCACAGTCAGCCATGGTCTGCGGCTCAGATGGCCACTCC TACACATCCAAGTGCAAATTGGAGTTCCATGCTTGTTCTACTGGCAAAAGCCTCGCCACCCTCTGTGATGGGCCCTGTCCCTGTCTCCCA GAGCCTGAGCCACCAAAGCACAAGGCAGAAAGGAGTGCCTGCACAGACAAGGAGTTGCGGAACCTTGCCTCCCGGCTGAAGGATTGGTTT GGAGCTCTCCACGAGGATGCGAACAGAGTCATCAAGCCCACCAGCTCCAACACAGCCCAAGGCAGGTTTGACACTAGCATCCTGCCCATC TGCAAGGACTCCCTGGGCTGGATGTTCAACAAGTTGGACATGAACTATGACCTCCTGCTTGACCCTTCAGAGATCAATGCCATCTACCTG GATAAGTACGAGCCCTGTATCAAGCCTCTTTTCAACTCGTGTGACTCCTTCAAGGATGGCAAGCTTTCTAACAATGAGTGGTGCTACTGC TTCCAGAAGCCTGGAGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTGAGTAAGGGGAAAAGCCTGTTGGGGGCCTTCATA CCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACACAGTGCCACGGCAGCACGGGGCAGTGCTGGTGTGTGGACAAATATGGGAATGAG TTGGCTGGCTCCAGGAAACAGGGTGCTGTGAGCTGTGAAGAGGAGCAGGAAACCTCAGGGGATTTTGGCAGTGGTGGGTCCGTGGTCCTG CTGGATGACCTAGAATATGAACGGGAGCTGGGACCAAAGGACAAAGAGGGGAAGCTGAGGGTGCACACCCGAGCCGTGACAGAGGATGAT GAGGATGAGGATGATGACAAAGAGGATGAGGTCGGGTACATATGGTAGTGCCCACAAGAAAGAGGACACAAGTTTTGCACAAAATTGCAA GTCACTTCCTATTCCTGCATTTGTATCTAAGACTCCAAGGCACCAAGGTCTCTTCTCCATTGTTGCTCTCTATACCCGACCTAAGGTTTG GAAGACAACTGCTTGTTCCCAGAGGATTCTGATTTTGCATATGTTTGTATGGGAGAAAGGGTGTTGTGTTTTTTTTTTGTTGTTGTTTAT TTTTTGGATAGGGAAGTCATTGGCTTAATTAGAGCCTCCTTCCTTTCTGTGAGATTTTTCCAACAAGCATGTGATTTACGTGGAATTCTG ACAGTGCAGGGAGCCCCAACCCTCTTAAATGTCAAAGACCCTTTTTGATTACCCACACTGGTGGTTATTACAGCATGGTTCCCAGCCTTA CAGTGTCTAAGTGCTTCTCTTGTGTCCTGTAGATGTTGTGAAAAAGAAAAAAACAAAAAATACACCACACTGTACTTTTTCCCCCTGCCC CCGTTACTGCCGGTGATTATTATTAAAAATTAGTTTTTTTCACATCATTATATCTGGCTTCCTATAAACAACAGCCTTAATTCAGTCAAG ACTCCCTTTGGGGAATTCATTTTATTAAAAATTGGTGTCTGGATACTTCCCTGTACATGCATAAATATGCATGCATGTACAGAAAGACTG TATGTGTGTGCCTTGCACACACACCCATACCTCTCAGAAAAAGTGTTTGGGTATCTTAAAAACTCGAAAAACAATGATAAATTTCTCAGC TTGTCCAGACCTGGAACAAAATTTCTGGAATAAGAAATTTGTATTAAAGTCCTTTTTTGCACTAACAGTTGGCTCTTGTAGCCTGCAGGC TGAGGAAGTCTCTTCTCTGTGCATCAGCAGAGTTACTGAAAGCCTCTGATTGAGAAAAAACCTCCGTCTGCCTAAATCACTTTTCTCGCA GAAGCCATGCGACTCCCACACGACACGGGCAGCTTCACAAGCCATCTCTTTCATTTCTGCTTGAAGCCCCTTGGCTGCAGCAATCCTGTC TGCCATAGGTTTCTTCCTTCCTTACCTACTCAAGGGCTTTTTCTAAGGCATGCACACATATCTCCTGTTCTCTGAGAGTACCATGGTGTT CCTTAAAAGAAGAAAATTTCTAATTCTGAACTCAATGTTTTGCTTTTACTCCCTTTCTACTGACAAATCATGATAAGGGCACAAAAGCTG TACAGATTTTTTTTTTTAACCACTCAATCCCAAATGGAGGCCTACAAAGAACATCGTAATAACACATGGAAGCAAACCCTGGGTTTTTAA GAGCAAATTCTGTCCCCCCCTCACTCCCCCAAGTGACAAGATACTAATGAAGAAAGTTCTTCACCATAGTGTTTGTTTTAACTAAACTCA TTGGAGTCTAGTTCCAAATTTGGTAGGGTCATCATCTCTACATTCCTTAGGATTTCTCTCCCTATCAAGCTGGCCCAGATACAAGTACCA AACAGTAGTCTCTGAAGTTCCCCCATTTCCTTCAGTACCAGTCTATAAGCTACTGTCCGCCACTGATTTTCATTTATCAGGGTGTCCTAA TCAGAATCAGCCACCCAAGCAAGCCTCTCTGGCCCACATATCTATCTCTTGCCTTCCCCCATGAACTTCAGCCTGTCCACACAAAAGCCA CATAAACTCAAGCAAGAAATATGTTCAGCCAAAACATGATTATAGTGGCAGCTGACCAATCCCCCATCCCAAATTGACCATTTAGATGTA CCAACTCACCTTAAATTAGCATGTTCCAATCCAGTCGGCATTGCCTGAATACAGTAGCATCATACCTATAGTTGGTCTTAGATAAGAAAT GAACTACTTGATATAGCAAAGTCCTTTGGCTTCGTAAATAACCCTGAGGTTTTGTACTTACTTTCCCCATAGGAAGACAGACCATAGGCA AACTCTGTTTTGGGATCTCAACTCCATCACCTTTGTTTCAATATTTTTTTTCTCTCTTGAACAAAACTGAGATAATTTAGAAAACAGGTG CTTAATTGCAATAAAATTACTATGAAGTATATTAAAAATCACGACATTGTAAAATCTCACTTTAGATCATCAAAGAAAACCATTGTTACT ATCTCCTTTGAGCTTAGGAAAATGTACAAGAGAACAAATTAAAATTGAAAAATTGATTTCACTTAGAAAAACTTCTAGGAACAGGGTGAA CCACTGATTTTAATTTGCCTAATTATCTTATGACAAGTATCAAATTAAGATGACACTTAAAGATCCTTAGCATTAACTTAATGATGGAGA AGAGTGCTCAATAGACAGTTCCCAGTAAGGTAATGAGATGCCATTTTCAGAGACATTCTAAGAAGATATTTTGATTCATTAAAACATTAA ATAAAAAGCCCTCCTCAGATTGGAACCCCCAAATCGATGGAGCCACATTAATAATACTTTTCATGCCTCACTTTGACATGACAGCATTCG ATTTTTTTAAAGATCTTTAATACTTTCCATGAGTACTAAAGATTGTAATGAGTTACCTTATCCTTAGAAGTAGAATGTTTGCTTTCTTCT TCTTGGAAATAGTCCTCCAAAAAGTCCACTTGTACCAGTGACAAGAAGTCACTTGTATAGTGACCAAGTACACATAAAATACTGATTATA AAAATATTGTAATAAACCACTTCCTCATTTGATACAGGTATTAAGCTGAATCCTCACTAATTCACTTTTGAAAAGTTCTTAATGAACAGT TTTATTCTTATTCCATGAACAGCTCTTTTAATACAATTTCCTTGGTATCCAACTTAAATCCCAGAATTTTGTTCCACCATGGTTAGTTAT TTGCCATATGAATGTATTCTTGTTTCTACCAATATTCTAGGCATGAGAATACCTTAATACTGAGTTGGAGATTTTGTATCTGTTTCTCCT CCTTTACGCCCATTTTCCTACCCACAGCAGCAAATGACAACGTGTCTGTCCAGGTCTGTCCCCCTGCTCATCCCAGGATGCCACTCACAT TTTTTTCTTCTTGTTACCTTGACCACGCTGTACAGTAACATCCAAGAGCCCATTCTACAGTGGGTGGTTTTGGTCTTTTTATAACTTTTT CTCAAAGTCACTGATGTTTGTTCCTGTTAAATGTATAGCATTGTAATGAGAGCCCATCAAATCCTGAGTGTCAGTTTGTTGTCCCTATTG TAGATGAAATAGTGATGTAGCAAAAACCTAGTAAATTCTGAATGCTTTTCCACGTAGACTTATCTGGAATGTGAACACAACTCTTTGGTT >In-frame_ENST00000587024_ENST00000394945_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(amino acids)=419AA_start in transcript=318_stop in transcript=1577 MPLLEHLLAAAIPCLLQRQPPVHELRLLPRQPALPRHQLCPRGHRLQLATKDLRLCSALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSR KHLLPRQKKGNVAQKHWVGPSNLVKCKPCPVAQSAMVCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTD KELRNLASRLKDWFGALHEDANRVIKPTSSNTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPCIKPLFNSCDS FKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQ -------------------------------------------------------------- >In-frame_ENST00000587024_ENST00000282223_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(transcript)=1619nt_BP=490nt GAAACCCGGAAGTGAGCGGCGGCAGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGCCCGAGATCAT GATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCC CGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGATTACCCGCAGCATGAACCCCCGCCGGC GGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAGAGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGC CTTCTCCAGCGACAGCCGCCCGTTCATGAGCTCCGCCTCCTTCCTCGGCAGCCAGCCCTGCCCAGACACCAGCTATGCCCCCGTGGCCAC CGCCTCCAGCTTGCCACCAAAGACCTGCGACTTTGCTCAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTAAAATGCAGCCCTCAC AAAGTGTGTGTGACCCAGGACTACCAGACCGCCCTGTGTGTCAGCCGCAAGCACCTGCTCCCCAGGCAAAAGAAGGGGAACGTGGCCCAG AAACACTGGGTTGGACCTTCGAATTTGGTCAAGTGCAAGCCCTGTCCCGTGGCACAGTCAGCCATGGTCTGCGGCTCAGATGGCCACTCC TACACATCCAAGTGCAAATTGGAGTTCCATGCTTGTTCTACTGGCAAAAGCCTCGCCACCCTCTGTGATGGGCCCTGTCCCTGTCTCCCA GAGCCTGAGCCACCAAAGCACAAGGCAGAAAGGAGTGCCTGCACAGACAAGGAGTTGCGGAACCTTGCCTCCCGGCTGAAGGATTGGTTT GGAGCTCTCCACGAGGATGCGAACAGAGTCATCAAGCCCACCAGCTCCAACACAGCCCAAGGCAGGTTTGACACTAGCATCCTGCCCATC TGCAAGGACTCCCTGGGCTGGATGTTCAACAAGTTGGACATGAACTATGACCTCCTGCTTGACCCTTCAGAGATCAATGCCATCTACCTG GATAAGTACGAGCCCTGTATCAAGCCTCTTTTCAACTCGTGTGACTCCTTCAAGGATGGCAAGCTTTCTAACAATGAGTGGTGCTACTGC TTCCAGAAGCCTGGAGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTGAGTAAGGGGAAAAGCCTGTTGGGGGCCTTCATA CCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACACAGTGCCACGGCAGCACGGGGCAGTGCTGGTGTGTGGACAAATATGGGAATGAG TTGGCTGGCTCCAGGAAACAGGGTGCTGTGAGCTGTGAAGAGGAGCAGGAAACCTCAGGGGATTTTGGCAGTGGTGGGTCCGTGGTCCTG CTGGATGACCTAGAATATGAACGGGAGCTGGGACCAAAGGACAAAGAGGGGAAGCTGAGGGTGCACACCCGAGCCGTGACAGAGGATGAT >In-frame_ENST00000587024_ENST00000282223_TCGA-A5-A0G5-01A_SBNO2_chr19_1147308_-_SPOCK1_chr5_136476383_length(amino acids)=419AA_start in transcript=318_stop in transcript=1577 MPLLEHLLAAAIPCLLQRQPPVHELRLLPRQPALPRHQLCPRGHRLQLATKDLRLCSALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSR KHLLPRQKKGNVAQKHWVGPSNLVKCKPCPVAQSAMVCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTD KELRNLASRLKDWFGALHEDANRVIKPTSSNTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPCIKPLFNSCDS FKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQ -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SBNO2-SPOCK1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SBNO2-SPOCK1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SBNO2-SPOCK1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | SBNO2 | C0036341 | Schizophrenia | 1 | PSYGENET |
| Tgene | SPOCK1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
| Tgene | SPOCK1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
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