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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SDK1-BAIAP2L1 (FusionGDB2 ID:79444) |
Fusion Gene Summary for SDK1-BAIAP2L1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SDK1-BAIAP2L1 | Fusion gene ID: 79444 | Hgene | Tgene | Gene symbol | SDK1 | BAIAP2L1 | Gene ID | 221935 | 55971 |
Gene name | sidekick cell adhesion molecule 1 | BAR/IMD domain containing adaptor protein 2 like 1 | |
Synonyms | - | IRTKS | |
Cytomap | 7p22.2 | 7q21.3-q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | protein sidekick-1sidekick homolog 1, cell adhesion molecule | brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1BAI1 associated protein 2 like 1BAI1-associated protein 2-like protein 1insulin receptor tyrosine kinase substrate | |
Modification date | 20200320 | 20200313 | |
UniProtAcc | . | Q9UHR4 | |
Ensembl transtripts involved in fusion gene | ENST00000404826, ENST00000389531, ENST00000466611, | ENST00000005260, ENST00000462558, | |
Fusion gene scores | * DoF score | 18 X 17 X 7=2142 | 16 X 9 X 7=1008 |
# samples | 19 | 16 | |
** MAII score | log2(19/2142*10)=-3.49488715641931 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(16/1008*10)=-2.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SDK1 [Title/Abstract] AND BAIAP2L1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SDK1(3341516)-BAIAP2L1(97949610), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | BAIAP2L1 | GO:0009617 | response to bacterium | 19366662 |
Tgene | BAIAP2L1 | GO:0030838 | positive regulation of actin filament polymerization | 21098279 |
Fusion gene breakpoints across SDK1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across BAIAP2L1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-VQ-A927 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
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Fusion Gene ORF analysis for SDK1-BAIAP2L1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000404826 | ENST00000005260 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
5CDS-5UTR | ENST00000404826 | ENST00000462558 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
In-frame | ENST00000389531 | ENST00000005260 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
5CDS-5UTR | ENST00000389531 | ENST00000462558 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
intron-3CDS | ENST00000466611 | ENST00000005260 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
intron-5UTR | ENST00000466611 | ENST00000462558 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000404826 | SDK1 | chr7 | 3341516 | + | ENST00000005260 | BAIAP2L1 | chr7 | 97949610 | - | 3629 | 437 | 85 | 1758 | 557 |
ENST00000389531 | SDK1 | chr7 | 3341516 | + | ENST00000005260 | BAIAP2L1 | chr7 | 97949610 | - | 3490 | 298 | 0 | 1619 | 539 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000404826 | ENST00000005260 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - | 0.005539334 | 0.9944607 |
ENST00000389531 | ENST00000005260 | SDK1 | chr7 | 3341516 | + | BAIAP2L1 | chr7 | 97949610 | - | 0.005208225 | 0.9947918 |
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Fusion Genomic Features for SDK1-BAIAP2L1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SDK1-BAIAP2L1 |
Go to FGviewer for the breakpoints of chr7:3341516-chr7:97949610 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | BAIAP2L1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: May function as adapter protein. Involved in the formation of clusters of actin bundles. Plays a role in the reorganization of the actin cytoskeleton in response to bacterial infection. {ECO:0000269|PubMed:17430976, ECO:0000269|PubMed:19366662, ECO:0000269|PubMed:22921828}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 19_58 | 99.33333333333333 | 2214.0 | Compositional bias | Note=Pro-rich |
Tgene | BAIAP2L1 | chr7:3341516 | chr7:97949610 | ENST00000005260 | 2 | 14 | 115_154 | 71.33333333333333 | 512.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | BAIAP2L1 | chr7:3341516 | chr7:97949610 | ENST00000005260 | 2 | 14 | 339_402 | 71.33333333333333 | 512.0 | Domain | SH3 | |
Tgene | BAIAP2L1 | chr7:3341516 | chr7:97949610 | ENST00000005260 | 2 | 14 | 483_511 | 71.33333333333333 | 512.0 | Region | Note=Binds F-actin |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 104_186 | 99.33333333333333 | 2214.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1072_1171 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 5 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1176_1274 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 6 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1279_1376 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 7 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1380_1474 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 8 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1479_1576 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 9 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1581_1699 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 10 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1704_1800 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 11 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1804_1899 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 12 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 1902_2000 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 13 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 191_277 | 99.33333333333333 | 2214.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 293_378 | 99.33333333333333 | 2214.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 386_476 | 99.33333333333333 | 2214.0 | Domain | Note=Ig-like C2-type 4 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 480_569 | 99.33333333333333 | 2214.0 | Domain | Note=Ig-like C2-type 5 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 574_663 | 99.33333333333333 | 2214.0 | Domain | Note=Ig-like C2-type 6 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 670_766 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 1 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 771_867 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 2 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 872_970 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 3 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 974_1068 | 99.33333333333333 | 2214.0 | Domain | Fibronectin type-III 4 |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 2207_2213 | 99.33333333333333 | 2214.0 | Motif | PDZ-binding |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 2031_2213 | 99.33333333333333 | 2214.0 | Topological domain | Cytoplasmic |
Hgene | SDK1 | chr7:3341516 | chr7:97949610 | ENST00000404826 | + | 1 | 45 | 2010_2030 | 99.33333333333333 | 2214.0 | Transmembrane | Helical |
Tgene | BAIAP2L1 | chr7:3341516 | chr7:97949610 | ENST00000005260 | 2 | 14 | 1_249 | 71.33333333333333 | 512.0 | Domain | IMD |
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Fusion Gene Sequence for SDK1-BAIAP2L1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000404826_ENST00000005260_TCGA-VQ-A927_SDK1_chr7_3341516_+_BAIAP2L1_chr7_97949610_length(transcript)=3629nt_BP=437nt CCTCAGCGCTGGGCGGCCGCTCACCTCGGGCCGGGGGGCGCCGCGCCTCCCGCGGAGTGGCCGCGCCCGCTCGGAGCCGTCCCGCCTGTC CTGCCCGCCCGTCCGTCCGGCGCGGCGCTCGGGGTGGCGGCTGCTCGGCATGGCCCGGGGCGCCCGGCCCTCGGCGGCCGGTGGCGGCGG CGGCGGCGCGGAGCCCCCTGAGCGCGCGGGCCCCGGGCGGCCGCGGGGATCCCCGCCCGGCCGCGCCCGCCCCTCGCTGGCGCCGCGCCC CGGCCCGGAGCCCTCGCGACCCCGGGCGGCGCCCGAGACCTCCGGCGGGGACACGGCGGGCGCGGGGCGGTGCGGCGGGCGGCGGGCGGC AAAGTTGGGGCCGGGCCGCCGCGGCTGGTGGGCGCTGCTGGCGCTGCAGCTGCACTTGCTCCGGGCGCTGGCGCAAGGACATGTCCTCAT AGAGATTTCAAGTACCCACAAGAAACTCAACGAGAGTCTTGATGAAAATTTTAAAAAATTCCACAAAGAGATTATCCATGAGCTGGAGAA GAAGATAGAACTTGACGTGAAATATATGAACGCAACTCTAAAAAGATACCAAACAGAACACAAGAATAAATTAGAGTCTTTGGAGAAATC CCAAGCTGAGTTGAAGAAGATCAGAAGGAAAAGCCAAGGAAGCCGAAACGCACTCAAATATGAACACAAAGAAATTGAGTATGTGGAGAC CGTTACTTCTCGTCAGAGTGAAATCCAGAAATTCATTGCAGATGGTTGCAAAGAGGCTCTGCTTGAAGAGAAGAGGCGCTTCTGCTTTCT GGTTGATAAGCACTGTGGCTTTGCAAACCACATACATTATTATCACTTACAGTCTGCAGAACTACTGAATTCCAAGCTGCCTCGGTGGCA GGAGACCTGTGTTGATGCCATCAAAGTGCCAGAGAAAATCATGAATATGATCGAAGAAATAAAGACCCCAGCCTCTACCCCCGTGTCTGG AACTCCTCAGGCTTCACCCATGATCGAGAGAAGCAATGTGGTTAGGAAAGATTACGACACCCTTTCTAAATGCTCACCAAAGATGCCCCC CGCTCCTTCAGGCAGAGCATATACCAGTCCCTTGATCGATATGTTTAATAACCCAGCCACGGCTGCCCCGAATTCACAAAGGGTAAATAA TTCAACAGGTACTTCCGAAGATCCCAGTTTACAGCGATCAGTTTCGGTTGCAACGGGACTGAACATGATGAAGAAGCAGAAAGTGAAGAC CATCTTCCCGCACACTGCGGGCTCCAACAAGACCTTACTCAGCTTTGCACAGGGAGATGTCATCACGCTGCTCATCCCCGAGGAGAAGGA TGGCTGGCTCTATGGAGAACACGACGTGTCCAAGGCGAGGGGTTGGTTCCCGTCGTCGTACACGAAGTTGCTGGAAGAAAATGAGACAGA AGCAGTGACCGTGCCCACGCCAAGCCCCACACCAGTGAGAAGCATCAGCACCGTGAACTTGTCTGAGAATAGCAGTGTTGTCATCCCCCC ACCCGACTACTTGGAATGCTTGTCCATGGGGGCAGCTGCCGACAGGAGAGCAGATTCGGCCAGGACGACATCCACCTTTAAGGCCCCAGC GTCCAAGCCCGAGACCGCGGCTCCTAACGATGCCAACGGGACTGCAAAGCCGCCTTTTCTCAGCGGAGAAAACCCCTTTGCCACTGTGAA ACTCCGCCCGACTGTGACGAATGATCGCTCGGCACCCATCATTCGATGAGAGGACAGCCAAGGACTCTCCCGGGCCTCTCCGGTTCTCCC TTGCGGAATGATGGGCGCATCCTGTCTGCCACGTGCTGACGGTCGGGAAGCTTCAGTGGAGAGGCCTAACTCTAATGTCGCCTGCTTAAG CAAATCATGCTTCTCTGTTTCACGTAGTTGGGTTGACAAGTTTCTGCCTTTAAGATAAATGAGTAATAGTCTAATGACCAGCTCAGCCAT TTAAAATATTTTCTTCCTATTCTGTTCAAGAAACAGTAAACTTGGTTTCAATCTTTACTGTATTTTTTAAATGAATTTTTTCCTTAATAA CAGCCAGAATAAGGGATAGTCTATGCTTTCAGGACTGGCTTTCTGCACCTGATATGAATGAGACCAGTTTTATTTTATAAAGCATGTGCT CTTAATAGCATTATGTCTAAAGAAGATATCACGTAAGTTTGCATCTTAGCATGCAAATCATAATTTTAAGCAATATAAATTATGAAAATA CTATATAAATGTAATTTAACTTAAAATGTTTAAGTGTAGAGCTTCCAGAGATGGAGAAACCCCCACCCTCCCTCCAACCACGCCAGAGCT GTAGAGTGCTAAGACGCTTTGCCTGCCCTTATCACAGCCACACGTAGCACTCGACGAAATCTCCTCCGAGAGCTCCTTTTCTTGGTAGTT AGGAGTCGCCAACGGATTCGCTGCACACGGCCCATCCAGGACACAGGCCTGGGCGTCGGAGTCACGGCTCCTTGTGTTCTCACTCAGCTA GTTGGCCAAAGCTGCATCCATTACCAGTACACTCAAACTGCTCGGGGTCCTGGTTTCTCCGTGTTTGAATCAGGTACAGACTCTCAAAGG ATACGTGTAAAGCCAGGATGACCTCTGGTGCCTGGAGAAGGGCGGGTTTTTCAGCCTAGCAGCCATGATGCCCTCGGAACCTGGCCCTAT GGTATGGATGTGAGGACTACGCACTGGCTGCCCTGAGCCCGGGGCTGGAAATCATCTTTGGCTGCCAAGGATCTGGACCTATTTTGGAGT GGAGAGTCATGGTTAAAATTCCCAGCCCGGCCCAGGTACGGGAATCCCAGCATTTTGTGAGGCCGAGGCAGGGGGATCACCTGAGGTCAG GAGTCTCTACTAAAAATACAAAAATTAGACAGGTGTGGTGGTGGGCGCCACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAG GCAGAGGTTGCAGTGAGCCAGATCATGCTGCTGCACTCCAGCCCGGCCGCTCACCGTGTGTGTTGCTGGGTGCTGGGGCTGTGACTTATC CCCTCTCCTTTAGCCTTGCCATAAGTGTAGTATCCTATGAGGCTGAGATTGGGAAAGGTTACATGCAGGTAAGCCAGTGGACGTGGCCGA TGCTTCAGGCTCCTTCCAGCCAGGTCCAGCAGTGTTACCATCTGCTTCTCCTGGGAGGACAAACCAGGCACCCCCACCATGAAGGGGCTG CAGGCACCATGAACTATGTTAACAACCCCAGTCTGTACTACAGAAAGGGCTGCAGCCACATGAGAATTCAGTCCACACAAGCCCCATGGC CGTGTTCCCCACTTCAGCCACAGGGCTCAGGGAGCCCCATCTGGCGCTAAGGGGAACTGCTGGGGTGTGGGTGACACCTGGCCTTTGGCG TTCTGCCTTGGGGAGGTTTCTGGTTTTGTTACGGGGTGGAAGAATAGGACCTGGGGGTCTCGGATGCAACCTGCAGACCCCGTGGCTCAC CCAACCCCAGGTTCTGCCTCCCAGACCAGAACGGGCATGGCCTGGTCCTTGGCACCGAGGTGCCTGCTCTGTAAATATCAAGGGATTACA >In-frame_ENST00000404826_ENST00000005260_TCGA-VQ-A927_SDK1_chr7_3341516_+_BAIAP2L1_chr7_97949610_length(amino acids)=557AA_start in transcript=85_stop in transcript=1758 MSCPPVRPARRSGWRLLGMARGARPSAAGGGGGGAEPPERAGPGRPRGSPPGRARPSLAPRPGPEPSRPRAAPETSGGDTAGAGRCGGRR AAKLGPGRRGWWALLALQLHLLRALAQGHVLIEISSTHKKLNESLDENFKKFHKEIIHELEKKIELDVKYMNATLKRYQTEHKNKLESLE KSQAELKKIRRKSQGSRNALKYEHKEIEYVETVTSRQSEIQKFIADGCKEALLEEKRRFCFLVDKHCGFANHIHYYHLQSAELLNSKLPR WQETCVDAIKVPEKIMNMIEEIKTPASTPVSGTPQASPMIERSNVVRKDYDTLSKCSPKMPPAPSGRAYTSPLIDMFNNPATAAPNSQRV NNSTGTSEDPSLQRSVSVATGLNMMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEENE TEAVTVPTPSPTPVRSISTVNLSENSSVVIPPPDYLECLSMGAAADRRADSARTTSTFKAPASKPETAAPNDANGTAKPPFLSGENPFAT -------------------------------------------------------------- >In-frame_ENST00000389531_ENST00000005260_TCGA-VQ-A927_SDK1_chr7_3341516_+_BAIAP2L1_chr7_97949610_length(transcript)=3490nt_BP=298nt ATGGCCCGGGGCGCCCGGCCCTCGGCGGCCGGTGGCGGCGGCGGCGGCGCGGAGCCCCCTGAGCGCGCGGGCCCCGGGCGGCCGCGGGGA TCCCCGCCCGGCCGCGCCCGCCCCTCGCTGGCGCCGCGCCCCGGCCCGGAGCCCTCGCGACCCCGGGCGGCGCCCGAGACCTCCGGCGGG GACACGGCGGGCGCGGGGCGGTGCGGCGGGCGGCGGGCGGCAAAGTTGGGGCCGGGCCGCCGCGGCTGGTGGGCGCTGCTGGCGCTGCAG CTGCACTTGCTCCGGGCGCTGGCGCAAGGACATGTCCTCATAGAGATTTCAAGTACCCACAAGAAACTCAACGAGAGTCTTGATGAAAAT TTTAAAAAATTCCACAAAGAGATTATCCATGAGCTGGAGAAGAAGATAGAACTTGACGTGAAATATATGAACGCAACTCTAAAAAGATAC CAAACAGAACACAAGAATAAATTAGAGTCTTTGGAGAAATCCCAAGCTGAGTTGAAGAAGATCAGAAGGAAAAGCCAAGGAAGCCGAAAC GCACTCAAATATGAACACAAAGAAATTGAGTATGTGGAGACCGTTACTTCTCGTCAGAGTGAAATCCAGAAATTCATTGCAGATGGTTGC AAAGAGGCTCTGCTTGAAGAGAAGAGGCGCTTCTGCTTTCTGGTTGATAAGCACTGTGGCTTTGCAAACCACATACATTATTATCACTTA CAGTCTGCAGAACTACTGAATTCCAAGCTGCCTCGGTGGCAGGAGACCTGTGTTGATGCCATCAAAGTGCCAGAGAAAATCATGAATATG ATCGAAGAAATAAAGACCCCAGCCTCTACCCCCGTGTCTGGAACTCCTCAGGCTTCACCCATGATCGAGAGAAGCAATGTGGTTAGGAAA GATTACGACACCCTTTCTAAATGCTCACCAAAGATGCCCCCCGCTCCTTCAGGCAGAGCATATACCAGTCCCTTGATCGATATGTTTAAT AACCCAGCCACGGCTGCCCCGAATTCACAAAGGGTAAATAATTCAACAGGTACTTCCGAAGATCCCAGTTTACAGCGATCAGTTTCGGTT GCAACGGGACTGAACATGATGAAGAAGCAGAAAGTGAAGACCATCTTCCCGCACACTGCGGGCTCCAACAAGACCTTACTCAGCTTTGCA CAGGGAGATGTCATCACGCTGCTCATCCCCGAGGAGAAGGATGGCTGGCTCTATGGAGAACACGACGTGTCCAAGGCGAGGGGTTGGTTC CCGTCGTCGTACACGAAGTTGCTGGAAGAAAATGAGACAGAAGCAGTGACCGTGCCCACGCCAAGCCCCACACCAGTGAGAAGCATCAGC ACCGTGAACTTGTCTGAGAATAGCAGTGTTGTCATCCCCCCACCCGACTACTTGGAATGCTTGTCCATGGGGGCAGCTGCCGACAGGAGA GCAGATTCGGCCAGGACGACATCCACCTTTAAGGCCCCAGCGTCCAAGCCCGAGACCGCGGCTCCTAACGATGCCAACGGGACTGCAAAG CCGCCTTTTCTCAGCGGAGAAAACCCCTTTGCCACTGTGAAACTCCGCCCGACTGTGACGAATGATCGCTCGGCACCCATCATTCGATGA GAGGACAGCCAAGGACTCTCCCGGGCCTCTCCGGTTCTCCCTTGCGGAATGATGGGCGCATCCTGTCTGCCACGTGCTGACGGTCGGGAA GCTTCAGTGGAGAGGCCTAACTCTAATGTCGCCTGCTTAAGCAAATCATGCTTCTCTGTTTCACGTAGTTGGGTTGACAAGTTTCTGCCT TTAAGATAAATGAGTAATAGTCTAATGACCAGCTCAGCCATTTAAAATATTTTCTTCCTATTCTGTTCAAGAAACAGTAAACTTGGTTTC AATCTTTACTGTATTTTTTAAATGAATTTTTTCCTTAATAACAGCCAGAATAAGGGATAGTCTATGCTTTCAGGACTGGCTTTCTGCACC TGATATGAATGAGACCAGTTTTATTTTATAAAGCATGTGCTCTTAATAGCATTATGTCTAAAGAAGATATCACGTAAGTTTGCATCTTAG CATGCAAATCATAATTTTAAGCAATATAAATTATGAAAATACTATATAAATGTAATTTAACTTAAAATGTTTAAGTGTAGAGCTTCCAGA GATGGAGAAACCCCCACCCTCCCTCCAACCACGCCAGAGCTGTAGAGTGCTAAGACGCTTTGCCTGCCCTTATCACAGCCACACGTAGCA CTCGACGAAATCTCCTCCGAGAGCTCCTTTTCTTGGTAGTTAGGAGTCGCCAACGGATTCGCTGCACACGGCCCATCCAGGACACAGGCC TGGGCGTCGGAGTCACGGCTCCTTGTGTTCTCACTCAGCTAGTTGGCCAAAGCTGCATCCATTACCAGTACACTCAAACTGCTCGGGGTC CTGGTTTCTCCGTGTTTGAATCAGGTACAGACTCTCAAAGGATACGTGTAAAGCCAGGATGACCTCTGGTGCCTGGAGAAGGGCGGGTTT TTCAGCCTAGCAGCCATGATGCCCTCGGAACCTGGCCCTATGGTATGGATGTGAGGACTACGCACTGGCTGCCCTGAGCCCGGGGCTGGA AATCATCTTTGGCTGCCAAGGATCTGGACCTATTTTGGAGTGGAGAGTCATGGTTAAAATTCCCAGCCCGGCCCAGGTACGGGAATCCCA GCATTTTGTGAGGCCGAGGCAGGGGGATCACCTGAGGTCAGGAGTCTCTACTAAAAATACAAAAATTAGACAGGTGTGGTGGTGGGCGCC ACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAGATCATGCTGCTGCACTCCAGCCCGGCCG CTCACCGTGTGTGTTGCTGGGTGCTGGGGCTGTGACTTATCCCCTCTCCTTTAGCCTTGCCATAAGTGTAGTATCCTATGAGGCTGAGAT TGGGAAAGGTTACATGCAGGTAAGCCAGTGGACGTGGCCGATGCTTCAGGCTCCTTCCAGCCAGGTCCAGCAGTGTTACCATCTGCTTCT CCTGGGAGGACAAACCAGGCACCCCCACCATGAAGGGGCTGCAGGCACCATGAACTATGTTAACAACCCCAGTCTGTACTACAGAAAGGG CTGCAGCCACATGAGAATTCAGTCCACACAAGCCCCATGGCCGTGTTCCCCACTTCAGCCACAGGGCTCAGGGAGCCCCATCTGGCGCTA AGGGGAACTGCTGGGGTGTGGGTGACACCTGGCCTTTGGCGTTCTGCCTTGGGGAGGTTTCTGGTTTTGTTACGGGGTGGAAGAATAGGA CCTGGGGGTCTCGGATGCAACCTGCAGACCCCGTGGCTCACCCAACCCCAGGTTCTGCCTCCCAGACCAGAACGGGCATGGCCTGGTCCT >In-frame_ENST00000389531_ENST00000005260_TCGA-VQ-A927_SDK1_chr7_3341516_+_BAIAP2L1_chr7_97949610_length(amino acids)=539AA_start in transcript=0_stop in transcript=1619 MARGARPSAAGGGGGGAEPPERAGPGRPRGSPPGRARPSLAPRPGPEPSRPRAAPETSGGDTAGAGRCGGRRAAKLGPGRRGWWALLALQ LHLLRALAQGHVLIEISSTHKKLNESLDENFKKFHKEIIHELEKKIELDVKYMNATLKRYQTEHKNKLESLEKSQAELKKIRRKSQGSRN ALKYEHKEIEYVETVTSRQSEIQKFIADGCKEALLEEKRRFCFLVDKHCGFANHIHYYHLQSAELLNSKLPRWQETCVDAIKVPEKIMNM IEEIKTPASTPVSGTPQASPMIERSNVVRKDYDTLSKCSPKMPPAPSGRAYTSPLIDMFNNPATAAPNSQRVNNSTGTSEDPSLQRSVSV ATGLNMMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEENETEAVTVPTPSPTPVRSIS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SDK1-BAIAP2L1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SDK1-BAIAP2L1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SDK1-BAIAP2L1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | BAIAP2L1 | C0003873 | Rheumatoid Arthritis | 1 | CTD_human |