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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SETD5-LMCD1 (FusionGDB2 ID:80352) |
Fusion Gene Summary for SETD5-LMCD1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SETD5-LMCD1 | Fusion gene ID: 80352 | Hgene | Tgene | Gene symbol | SETD5 | LMCD1 | Gene ID | 55209 | 29995 |
Gene name | SET domain containing 5 | LIM and cysteine rich domains 1 | |
Synonyms | - | - | |
Cytomap | 3p25.3 | 3p25.3 | |
Type of gene | protein-coding | protein-coding | |
Description | histone-lysine N-methyltransferase SETD5SET domain-containing protein 5 | LIM and cysteine-rich domains protein 1dyxin | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q9NZU5 | |
Ensembl transtripts involved in fusion gene | ENST00000402198, ENST00000402466, ENST00000406341, ENST00000407969, ENST00000302463, ENST00000488236, | ENST00000157600, ENST00000535732, ENST00000454244, ENST00000397386, | |
Fusion gene scores | * DoF score | 19 X 16 X 7=2128 | 4 X 2 X 3=24 |
# samples | 23 | 4 | |
** MAII score | log2(23/2128*10)=-3.20979238455681 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SETD5 [Title/Abstract] AND LMCD1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SETD5(9483929)-LMCD1(8574423), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across SETD5 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across LMCD1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-LL-A8F5-01A | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
ChimerDB4 | BRCA | TCGA-LL-A8F5-01A | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
ChimerDB4 | BRCA | TCGA-LL-A8F5-01A | SETD5 | chr3 | 9483929 | - | LMCD1 | chr3 | 8574423 | + |
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Fusion Gene ORF analysis for SETD5-LMCD1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000402198 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000402198 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-intron | ENST00000402198 | ENST00000454244 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-5UTR | ENST00000402198 | ENST00000397386 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000402466 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000402466 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-intron | ENST00000402466 | ENST00000454244 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-5UTR | ENST00000402466 | ENST00000397386 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000406341 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000406341 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-intron | ENST00000406341 | ENST00000454244 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-5UTR | ENST00000406341 | ENST00000397386 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000407969 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000407969 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-intron | ENST00000407969 | ENST00000454244 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-5UTR | ENST00000407969 | ENST00000397386 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000302463 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
In-frame | ENST00000302463 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-intron | ENST00000302463 | ENST00000454244 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
5CDS-5UTR | ENST00000302463 | ENST00000397386 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
intron-3CDS | ENST00000488236 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
intron-3CDS | ENST00000488236 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
intron-intron | ENST00000488236 | ENST00000454244 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
intron-5UTR | ENST00000488236 | ENST00000397386 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000402198 | SETD5 | chr3 | 9483929 | + | ENST00000157600 | LMCD1 | chr3 | 8574423 | + | 3089 | 1512 | 426 | 2567 | 713 |
ENST00000402198 | SETD5 | chr3 | 9483929 | + | ENST00000535732 | LMCD1 | chr3 | 8574423 | + | 2214 | 1512 | 426 | 2213 | 595 |
ENST00000402466 | SETD5 | chr3 | 9483929 | + | ENST00000157600 | LMCD1 | chr3 | 8574423 | + | 3128 | 1551 | 426 | 2606 | 726 |
ENST00000402466 | SETD5 | chr3 | 9483929 | + | ENST00000535732 | LMCD1 | chr3 | 8574423 | + | 2253 | 1551 | 426 | 2252 | 608 |
ENST00000406341 | SETD5 | chr3 | 9483929 | + | ENST00000157600 | LMCD1 | chr3 | 8574423 | + | 2844 | 1267 | 181 | 2322 | 713 |
ENST00000406341 | SETD5 | chr3 | 9483929 | + | ENST00000535732 | LMCD1 | chr3 | 8574423 | + | 1969 | 1267 | 181 | 1968 | 596 |
ENST00000407969 | SETD5 | chr3 | 9483929 | + | ENST00000157600 | LMCD1 | chr3 | 8574423 | + | 2725 | 1148 | 5 | 2203 | 732 |
ENST00000407969 | SETD5 | chr3 | 9483929 | + | ENST00000535732 | LMCD1 | chr3 | 8574423 | + | 1850 | 1148 | 5 | 1849 | 615 |
ENST00000302463 | SETD5 | chr3 | 9483929 | + | ENST00000157600 | LMCD1 | chr3 | 8574423 | + | 2724 | 1147 | 196 | 2202 | 668 |
ENST00000302463 | SETD5 | chr3 | 9483929 | + | ENST00000535732 | LMCD1 | chr3 | 8574423 | + | 1849 | 1147 | 196 | 1848 | 551 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000402198 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.002262726 | 0.9977373 |
ENST00000402198 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.004256195 | 0.9957438 |
ENST00000402466 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.003131992 | 0.99686795 |
ENST00000402466 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.005210003 | 0.99478996 |
ENST00000406341 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.001994971 | 0.9980051 |
ENST00000406341 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.003684326 | 0.99631566 |
ENST00000407969 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.002849667 | 0.99715036 |
ENST00000407969 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.003789176 | 0.9962108 |
ENST00000302463 | ENST00000157600 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.005026999 | 0.99497294 |
ENST00000302463 | ENST00000535732 | SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574423 | + | 0.003901118 | 0.9960989 |
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Fusion Genomic Features for SETD5-LMCD1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574422 | + | 0.15257129 | 0.84742874 |
SETD5 | chr3 | 9483929 | + | LMCD1 | chr3 | 8574422 | + | 0.15257129 | 0.84742874 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SETD5-LMCD1 |
Go to FGviewer for the breakpoints of chr3:9483929-chr3:8574423 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | LMCD1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Transcriptional cofactor that restricts GATA6 function by inhibiting DNA-binding, resulting in repression of GATA6 transcriptional activation of downstream target genes. Represses GATA6-mediated trans activation of lung- and cardiac tissue-specific promoters. Inhibits DNA-binding by GATA4 and GATA1 to the cTNC promoter (By similarity). Plays a critical role in the development of cardiac hypertrophy via activation of calcineurin/nuclear factor of activated T-cells signaling pathway. {ECO:0000250, ECO:0000269|PubMed:20026769}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | LMCD1 | chr3:9483929 | chr3:8574423 | ENST00000157600 | 0 | 6 | 28_58 | 14.0 | 366.0 | Compositional bias | Note=Cys-rich | |
Tgene | LMCD1 | chr3:9483929 | chr3:8574423 | ENST00000157600 | 0 | 6 | 241_306 | 14.0 | 366.0 | Domain | LIM zinc-binding 1 | |
Tgene | LMCD1 | chr3:9483929 | chr3:8574423 | ENST00000157600 | 0 | 6 | 307_365 | 14.0 | 366.0 | Domain | LIM zinc-binding 2 | |
Tgene | LMCD1 | chr3:9483929 | chr3:8574423 | ENST00000157600 | 0 | 6 | 99_206 | 14.0 | 366.0 | Domain | PET |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000302463 | + | 9 | 22 | 1089_1411 | 261.0 | 1345.0 | Compositional bias | Note=Ser-rich |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000402198 | + | 10 | 23 | 1089_1411 | 359.0 | 1443.0 | Compositional bias | Note=Ser-rich |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000402466 | + | 11 | 24 | 1089_1411 | 261.0 | 1345.0 | Compositional bias | Note=Ser-rich |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000406341 | + | 9 | 22 | 1089_1411 | 359.0 | 1443.0 | Compositional bias | Note=Ser-rich |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000302463 | + | 9 | 22 | 269_390 | 261.0 | 1345.0 | Domain | SET |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000402198 | + | 10 | 23 | 269_390 | 359.0 | 1443.0 | Domain | SET |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000402466 | + | 11 | 24 | 269_390 | 261.0 | 1345.0 | Domain | SET |
Hgene | SETD5 | chr3:9483929 | chr3:8574423 | ENST00000406341 | + | 9 | 22 | 269_390 | 359.0 | 1443.0 | Domain | SET |
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Fusion Gene Sequence for SETD5-LMCD1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000402198_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=3089nt_BP=1512nt GCTCAGAGACTCACGCAGCCCCAGTCCCGCCAGTCCGCCAACACAGTAGTGCCGGCCCCCCTCTTTCCCTGGCCCTGCCCCCCCTCCCCG CCTTTGGCTCGCTCCGCCTTTCTGCCCCCCACCCCCACCTCACGGGTACGGGCCATTCCCGGCCAGGAAACGCCGTGGCGCCGCGTTGGG CCTAACTCGAGTCCTGCCGCCTCCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAGGTCTTCAGAAC TACTAGCAGATAATTTGGGGGGACTTCATATTCAGAAGTCTATATAAAGGATTCCTCATGTCCATAACATGTTGGATGAGGCTCTGCAGC TCACCCCCACTCTCAGAGTGGTCAGTCTCCATTAATTGGACCCCGTGATTTCCAATCTCTGCTGTGTTGGACGTCATGAGCATTGCAATC CCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAAT GAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCT GACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGT GGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAG GACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCAC ACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACG AAGAAAATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGAC CAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGC AAACCTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGA GTCACTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTC ATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAG ATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTG CAGTCAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGC AAATGCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACC CTCACTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGACCAACCCTATTGCTACTGGGAAAGAT CCCACTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAG AAGCAGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGC TGCCGTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCC CTCCCGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGC AGTCTCAGTGACCCGTCCAAAGAAGTGGAATACGTCTGCGAGCTCTGCAAGGGAGCGGCCCCTCCTGACAGCCCCGTGGTCTACTCGGAC AGGGCAGGCTACAACAAGCAGTGGCACCCCACCTGCTTTGTGTGTGCCAAGTGCTCCGAGCCGCTGGTGGACCTCATCTACTTCTGGAAG GATGGTGCACCCTGGTGCGGCCGCCATTACTGCGAGAGTCTGCGGCCCCGGTGCTCCGGCTGCGATGAGATAATATTCGCTGAGGACTAC CAGCGTGTGGAAGATCTGGCCTGGCACCGAAAGCACTTTGTCTGTGAGGGTTGTGAGCAGCTGCTGAGCGGCCGGGCGTACATCGTCACC AAGGGTCAGCTTCTGTGCCCAACTTGCAGCAAGTCCAAACGCTCCTGAAGGGCTGCCCACCCACAGCCAGAATCCACAGGATCCCACCGA GAAGGAGAGCCAGGTGTGCCGAGACCATCCTAAGGGTCCGATGTGACAGCAAGCAAGTGAAATAAACAATGATTTGCTTTTCAGTGAGAA TATATATATGAGATATATATAGATATATATTCTAGGTTGGGTGGTGGTAGATCCTTGAGGGTCAGTAGTTTCAAAACCAAAAATATTCTA AGAAGTCTTAGGATGGAGTTCCTTTTCTTTCTGTTGTTGTTTCCCAGCTACAACCAACTAAAGACACAAATGGCGTTCTGCAAGGGGACT CTGGGAGGAGTTTTCCAGAATGCAATTCCGAGTGAGCAAATCGCATAGCTGTAGAATGTGCGTGCTTTTTTGTGGACACAGGAGCTCCTC CAGGAGCAGGCTGGGATCCCAACTATCGCTTGTTGCCTCTTTTTCAAGTGGAATTTGAATTTTAAATAAACAACTTTTTTTGGCATGATA >In-frame_ENST00000402198_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=713AA_start in transcript=426_stop in transcript=2567 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGLPSPVEERCGDSPNSEGE TVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPE KGRAAPKTKKIKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGS QMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPN AEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMT NPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENELKLMEEFVKQYKSE ALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKCSEPL -------------------------------------------------------------- >In-frame_ENST00000402198_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=2214nt_BP=1512nt GCTCAGAGACTCACGCAGCCCCAGTCCCGCCAGTCCGCCAACACAGTAGTGCCGGCCCCCCTCTTTCCCTGGCCCTGCCCCCCCTCCCCG CCTTTGGCTCGCTCCGCCTTTCTGCCCCCCACCCCCACCTCACGGGTACGGGCCATTCCCGGCCAGGAAACGCCGTGGCGCCGCGTTGGG CCTAACTCGAGTCCTGCCGCCTCCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAGGTCTTCAGAAC TACTAGCAGATAATTTGGGGGGACTTCATATTCAGAAGTCTATATAAAGGATTCCTCATGTCCATAACATGTTGGATGAGGCTCTGCAGC TCACCCCCACTCTCAGAGTGGTCAGTCTCCATTAATTGGACCCCGTGATTTCCAATCTCTGCTGTGTTGGACGTCATGAGCATTGCAATC CCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAAT GAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCT GACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGT GGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAG GACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCAC ACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACG AAGAAAATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGAC CAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGC AAACCTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGA GTCACTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTC ATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAG ATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTG CAGTCAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGC AAATGCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACC CTCACTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGACCAACCCTATTGCTACTGGGAAAGAT CCCACTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAG AAGCAGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGC TGCCGTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCC CTCCCGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGC >In-frame_ENST00000402198_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=595AA_start in transcript=426_stop in transcript=2213 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGLPSPVEERCGDSPNSEGE TVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPE KGRAAPKTKKIKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGS QMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPN AEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMT NPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENELKLMEEFVKQYKSE -------------------------------------------------------------- >In-frame_ENST00000402466_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=3128nt_BP=1551nt GCTCAGAGACTCACGCAGCCCCAGTCCCGCCAGTCCGCCAACACAGTAGTGCCGGCCCCCCTCTTTCCCTGGCCCTGCCCCCCCTCCCCG CCTTTGGCTCGCTCCGCCTTTCTGCCCCCCACCCCCACCTCACGGGTACGGGCCATTCCCGGCCAGGAAACGCCGTGGCGCCGCGTTGGG CCTAACTCGAGTCCTGCCGCCTCCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAGGTCTTCAGAAC TACTAGCAGATAATTTGGGGGGACTTCATATTCAGAAGTCTATATAAAGGATTCCTCATGTCCATAACATGTTGGATGAGGCTCTGCAGC TCACCCCCACTCTCAGAGTGGTCAGTCTCCATTAATTGGACCCCGTGATTTCCAATCTCTGCTGTGTTGGACGTCATGAGCATTGCAATC CCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAAT GAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCT GACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGT GGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAG GACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCAC ACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACG AAGAAAATCAAGGCATTTCGAGAGGGATCCCGGAAGTCCTTGCGGATGAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACA ACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGACCAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCG CTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGCAAACCTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAAC ACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTG GCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTCATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATAC CCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGA TCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTGCAGTCAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGC TTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGCAAATGCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGG AAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCACTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAAC CGGATGATCATGACCAACCCTATTGCTACTGGGAAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAG AAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTC ATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGCCGTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAG CAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCCCTCCCGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAG CCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGCAGTCTCAGTGACCCGTCCAAAGAAGTGGAATACGTCTGCGAGCTCTGCAAG GGAGCGGCCCCTCCTGACAGCCCCGTGGTCTACTCGGACAGGGCAGGCTACAACAAGCAGTGGCACCCCACCTGCTTTGTGTGTGCCAAG TGCTCCGAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGCACCCTGGTGCGGCCGCCATTACTGCGAGAGTCTGCGGCCCCGG TGCTCCGGCTGCGATGAGATAATATTCGCTGAGGACTACCAGCGTGTGGAAGATCTGGCCTGGCACCGAAAGCACTTTGTCTGTGAGGGT TGTGAGCAGCTGCTGAGCGGCCGGGCGTACATCGTCACCAAGGGTCAGCTTCTGTGCCCAACTTGCAGCAAGTCCAAACGCTCCTGAAGG GCTGCCCACCCACAGCCAGAATCCACAGGATCCCACCGAGAAGGAGAGCCAGGTGTGCCGAGACCATCCTAAGGGTCCGATGTGACAGCA AGCAAGTGAAATAAACAATGATTTGCTTTTCAGTGAGAATATATATATGAGATATATATAGATATATATTCTAGGTTGGGTGGTGGTAGA TCCTTGAGGGTCAGTAGTTTCAAAACCAAAAATATTCTAAGAAGTCTTAGGATGGAGTTCCTTTTCTTTCTGTTGTTGTTTCCCAGCTAC AACCAACTAAAGACACAAATGGCGTTCTGCAAGGGGACTCTGGGAGGAGTTTTCCAGAATGCAATTCCGAGTGAGCAAATCGCATAGCTG TAGAATGTGCGTGCTTTTTTGTGGACACAGGAGCTCCTCCAGGAGCAGGCTGGGATCCCAACTATCGCTTGTTGCCTCTTTTTCAAGTGG >In-frame_ENST00000402466_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=726AA_start in transcript=426_stop in transcript=2606 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGLPSPVEERCGDSPNSEGE TVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPE KGRAAPKTKKIKAFREGSRKSLRMKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTIN KTELACNNTVIGSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFG NDARFIRRSCTPNAEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGD GIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENEL KLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAGYNKQWH PTCFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQRVEDLAWHRKHFVCEGCEQLLSGRAYIVTKGQLLCPTC -------------------------------------------------------------- >In-frame_ENST00000402466_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=2253nt_BP=1551nt GCTCAGAGACTCACGCAGCCCCAGTCCCGCCAGTCCGCCAACACAGTAGTGCCGGCCCCCCTCTTTCCCTGGCCCTGCCCCCCCTCCCCG CCTTTGGCTCGCTCCGCCTTTCTGCCCCCCACCCCCACCTCACGGGTACGGGCCATTCCCGGCCAGGAAACGCCGTGGCGCCGCGTTGGG CCTAACTCGAGTCCTGCCGCCTCCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAGGTCTTCAGAAC TACTAGCAGATAATTTGGGGGGACTTCATATTCAGAAGTCTATATAAAGGATTCCTCATGTCCATAACATGTTGGATGAGGCTCTGCAGC TCACCCCCACTCTCAGAGTGGTCAGTCTCCATTAATTGGACCCCGTGATTTCCAATCTCTGCTGTGTTGGACGTCATGAGCATTGCAATC CCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAAT GAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCT GACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGT GGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAG GACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCAC ACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACG AAGAAAATCAAGGCATTTCGAGAGGGATCCCGGAAGTCCTTGCGGATGAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACA ACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGACCAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCG CTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGCAAACCTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAAC ACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTG GCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTCATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATAC CCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGA TCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTGCAGTCAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGC TTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGCAAATGCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGG AAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCACTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAAC CGGATGATCATGACCAACCCTATTGCTACTGGGAAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAG AAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTC ATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGCCGTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAG CAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCCCTCCCGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAG CCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGCAGTCTCAGTGACCCGTCCAAAGAAGTGGAATACAAGCCAGTCCCACTCGTG >In-frame_ENST00000402466_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=608AA_start in transcript=426_stop in transcript=2252 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGLPSPVEERCGDSPNSEGE TVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPE KGRAAPKTKKIKAFREGSRKSLRMKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTIN KTELACNNTVIGSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFG NDARFIRRSCTPNAEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGD GIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENEL -------------------------------------------------------------- >In-frame_ENST00000406341_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=2844nt_BP=1267nt CTCGAGTCCTGCCGCCTCCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAGGATTCCTCATGTCCAT AACATGTTGGATGAGGCTCTGCAGCTCACCCCCACTCTCAGAGTGGTCAGTCTCCATTAATTGGACCCCGTGATTTCCAATCTCTGCTGT GTTGGACGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTGAATC TGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCC TTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGA AACTGTACCTACCTGGTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGT TATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCAC TGTGTTGTATACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGA AAAGGGTCGTGCAGCACCAAAGACGAAGAAAATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGA AAATCGGATAAGACTATGGACTGACCAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCT ACATTCTAGCAAGGAATTTGTGGGCAAACCTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTC CCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCT TATAATAGAGTATCGTGGGAAAGTCATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTT CTACTCAAAATTCAATGGTGTAGAGATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAA TGCAGAGATGTCCCTGGGCCAGCTGCAGTCAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTC ATGGAGGAAAATATGCAAGTCTTGCAAATGCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTT GCTGATGGACTCCAAGTATTCCACCCTCACTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGAC CAACCCTATTGCTACTGGGAAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCA GTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCC CATCTATGACCAGGATCCCTCGCGCTGCCGTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGA GGCCCTCGGCGTGGGAGAAGTGGCCCTCCCGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGA GACCACTGCTGCTACCACCAACGGCAGTCTCAGTGACCCGTCCAAAGAAGTGGAATACGTCTGCGAGCTCTGCAAGGGAGCGGCCCCTCC TGACAGCCCCGTGGTCTACTCGGACAGGGCAGGCTACAACAAGCAGTGGCACCCCACCTGCTTTGTGTGTGCCAAGTGCTCCGAGCCGCT GGTGGACCTCATCTACTTCTGGAAGGATGGTGCACCCTGGTGCGGCCGCCATTACTGCGAGAGTCTGCGGCCCCGGTGCTCCGGCTGCGA TGAGATAATATTCGCTGAGGACTACCAGCGTGTGGAAGATCTGGCCTGGCACCGAAAGCACTTTGTCTGTGAGGGTTGTGAGCAGCTGCT GAGCGGCCGGGCGTACATCGTCACCAAGGGTCAGCTTCTGTGCCCAACTTGCAGCAAGTCCAAACGCTCCTGAAGGGCTGCCCACCCACA GCCAGAATCCACAGGATCCCACCGAGAAGGAGAGCCAGGTGTGCCGAGACCATCCTAAGGGTCCGATGTGACAGCAAGCAAGTGAAATAA ACAATGATTTGCTTTTCAGTGAGAATATATATATGAGATATATATAGATATATATTCTAGGTTGGGTGGTGGTAGATCCTTGAGGGTCAG TAGTTTCAAAACCAAAAATATTCTAAGAAGTCTTAGGATGGAGTTCCTTTTCTTTCTGTTGTTGTTTCCCAGCTACAACCAACTAAAGAC ACAAATGGCGTTCTGCAAGGGGACTCTGGGAGGAGTTTTCCAGAATGCAATTCCGAGTGAGCAAATCGCATAGCTGTAGAATGTGCGTGC TTTTTTGTGGACACAGGAGCTCCTCCAGGAGCAGGCTGGGATCCCAACTATCGCTTGTTGCCTCTTTTTCAAGTGGAATTTGAATTTTAA >In-frame_ENST00000406341_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=713AA_start in transcript=181_stop in transcript=2322 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGLPSPVEERCGDSPNSEGE TVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPE KGRAAPKTKKIKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGS QMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPN AEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMT NPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENELKLMEEFVKQYKSE ALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKCSEPL -------------------------------------------------------------- >In-frame_ENST00000406341_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=1969nt_BP=1267nt CTCGAGTCCTGCCGCCTCCCGGGAGTGCCGTGCGCCGCAGCCCGGGCCCAGGCCCCGGCAGCGCCTGGGACAAGGATTCCTCATGTCCAT AACATGTTGGATGAGGCTCTGCAGCTCACCCCCACTCTCAGAGTGGTCAGTCTCCATTAATTGGACCCCGTGATTTCCAATCTCTGCTGT GTTGGACGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTGAATC TGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCC TTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGA AACTGTACCTACCTGGTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGT TATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCAC TGTGTTGTATACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGA AAAGGGTCGTGCAGCACCAAAGACGAAGAAAATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGA AAATCGGATAAGACTATGGACTGACCAGTATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCT ACATTCTAGCAAGGAATTTGTGGGCAAACCTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTC CCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCT TATAATAGAGTATCGTGGGAAAGTCATGTTACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTT CTACTCAAAATTCAATGGTGTAGAGATGTGTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAA TGCAGAGATGTCCCTGGGCCAGCTGCAGTCAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTC ATGGAGGAAAATATGCAAGTCTTGCAAATGCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTT GCTGATGGACTCCAAGTATTCCACCCTCACTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGAC CAACCCTATTGCTACTGGGAAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCA GTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCC CATCTATGACCAGGATCCCTCGCGCTGCCGTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGA GGCCCTCGGCGTGGGAGAAGTGGCCCTCCCGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGA >In-frame_ENST00000406341_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=596AA_start in transcript=181_stop in transcript=1968 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYATIIPRSDLNGLPSPVEERCGDSPNSEGE TVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPTSITLTVRRTKPKKRKKSPE KGRAAPKTKKIKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGS QMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPN AEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMT NPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENELKLMEEFVKQYKSE -------------------------------------------------------------- >In-frame_ENST00000407969_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=2725nt_BP=1148nt CTGTGTTGGACGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTG AATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGAC TGCCTTATGCTGATCATAATTACGGAGCCCCTCCTCCTCCGACACCTCCTGCTTCTCCCCCTGTCCAGACGATCATCCCTCGTTCTGACC TGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGTGGTC TTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACA ACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCACACAC CTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGA AAATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGACCAGT ATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGCAAAC CTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCA CTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTCATGT TACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGT GTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTGCAGT CAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGCAAAT GCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCA CTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGACCAACCCTATTGCTACTGGGAAAGATCCCA CTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAGAAGC AGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGCC GTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCCCTCC CGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGCAGTC TCAGTGACCCGTCCAAAGAAGTGGAATACGTCTGCGAGCTCTGCAAGGGAGCGGCCCCTCCTGACAGCCCCGTGGTCTACTCGGACAGGG CAGGCTACAACAAGCAGTGGCACCCCACCTGCTTTGTGTGTGCCAAGTGCTCCGAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATG GTGCACCCTGGTGCGGCCGCCATTACTGCGAGAGTCTGCGGCCCCGGTGCTCCGGCTGCGATGAGATAATATTCGCTGAGGACTACCAGC GTGTGGAAGATCTGGCCTGGCACCGAAAGCACTTTGTCTGTGAGGGTTGTGAGCAGCTGCTGAGCGGCCGGGCGTACATCGTCACCAAGG GTCAGCTTCTGTGCCCAACTTGCAGCAAGTCCAAACGCTCCTGAAGGGCTGCCCACCCACAGCCAGAATCCACAGGATCCCACCGAGAAG GAGAGCCAGGTGTGCCGAGACCATCCTAAGGGTCCGATGTGACAGCAAGCAAGTGAAATAAACAATGATTTGCTTTTCAGTGAGAATATA TATATGAGATATATATAGATATATATTCTAGGTTGGGTGGTGGTAGATCCTTGAGGGTCAGTAGTTTCAAAACCAAAAATATTCTAAGAA GTCTTAGGATGGAGTTCCTTTTCTTTCTGTTGTTGTTTCCCAGCTACAACCAACTAAAGACACAAATGGCGTTCTGCAAGGGGACTCTGG GAGGAGTTTTCCAGAATGCAATTCCGAGTGAGCAAATCGCATAGCTGTAGAATGTGCGTGCTTTTTTGTGGACACAGGAGCTCCTCCAGG AGCAGGCTGGGATCCCAACTATCGCTTGTTGCCTCTTTTTCAAGTGGAATTTGAATTTTAAATAAACAACTTTTTTTGGCATGATAAACA >In-frame_ENST00000407969_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=732AA_start in transcript=5_stop in transcript=2203 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYADHNYGAPPPPTPPASPPVQTIIPRSDLN GLPSPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPT SITLTVRRTKPKKRKKSPEKGRAAPKTKKIKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPT ILDTINKTELACNNTVIGSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCV DARTFGNDARFIRRSCTPNAEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTA RVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRG LLENELKLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAG YNKQWHPTCFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQRVEDLAWHRKHFVCEGCEQLLSGRAYIVTKGQ -------------------------------------------------------------- >In-frame_ENST00000407969_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=1850nt_BP=1148nt CTGTGTTGGACGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGACCCTG AATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGAC TGCCTTATGCTGATCATAATTACGGAGCCCCTCCTCCTCCGACACCTCCTGCTTCTCCCCCTGTCCAGACGATCATCCCTCGTTCTGACC TGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGACAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGTGGTC TTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACA ACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCACACAC CTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGA AAATCAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGACCAGT ATGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGCAAAC CTACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCA CTCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTCATGT TACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGT GTGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTGCAGT CAGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGCAAAT GCAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCA CTGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGACCAACCCTATTGCTACTGGGAAAGATCCCA CTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAGAAGC AGCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGCC GTGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCCCTCC CGGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGCAGTC >In-frame_ENST00000407969_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=615AA_start in transcript=5_stop in transcript=1849 MDVMSIAIPLGVTTSDTSYSDMAAGSDPESVEASPAVNEKSVYSTHNYGTTQRHGCRGLPYADHNYGAPPPPTPPASPPVQTIIPRSDLN GLPSPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSPSTVLYTATQHTPT SITLTVRRTKPKKRKKSPEKGRAAPKTKKIKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFTNQYSADVQNALEQHLHSSKEFVGKPT ILDTINKTELACNNTVIGSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKKPYPFVLFYSKFNGVEMCV DARTFGNDARFIRRSCTPNAEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTA RVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRG -------------------------------------------------------------- >In-frame_ENST00000302463_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=2724nt_BP=1147nt GGCAGTACCAGGGATTAGGGTCTGGGCTGGAAAAATCCTGGTGTTTTGAATATGTTCAGGTCCAGTTCAGACTCTTGATCCCACAGCCAC TTCTTGAGTGAGCCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAG GCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGA CAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAG GGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGA TGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAA GAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAAATCAAGGCATTTCGAGAGGGATCCCGGAAGTCCTTGCG GATGAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGACCAGTA TGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGCAAACC TACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCAC TCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTCATGTT ACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTG TGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTGCAGTC AGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGCAAATG CAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCAC TGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGACCAACCCTATTGCTACTGGGAAAGATCCCAC TTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAGAAGCA GCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGCCG TGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCCCTCCC GGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGCAGTCT CAGTGACCCGTCCAAAGAAGTGGAATACGTCTGCGAGCTCTGCAAGGGAGCGGCCCCTCCTGACAGCCCCGTGGTCTACTCGGACAGGGC AGGCTACAACAAGCAGTGGCACCCCACCTGCTTTGTGTGTGCCAAGTGCTCCGAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGG TGCACCCTGGTGCGGCCGCCATTACTGCGAGAGTCTGCGGCCCCGGTGCTCCGGCTGCGATGAGATAATATTCGCTGAGGACTACCAGCG TGTGGAAGATCTGGCCTGGCACCGAAAGCACTTTGTCTGTGAGGGTTGTGAGCAGCTGCTGAGCGGCCGGGCGTACATCGTCACCAAGGG TCAGCTTCTGTGCCCAACTTGCAGCAAGTCCAAACGCTCCTGAAGGGCTGCCCACCCACAGCCAGAATCCACAGGATCCCACCGAGAAGG AGAGCCAGGTGTGCCGAGACCATCCTAAGGGTCCGATGTGACAGCAAGCAAGTGAAATAAACAATGATTTGCTTTTCAGTGAGAATATAT ATATGAGATATATATAGATATATATTCTAGGTTGGGTGGTGGTAGATCCTTGAGGGTCAGTAGTTTCAAAACCAAAAATATTCTAAGAAG TCTTAGGATGGAGTTCCTTTTCTTTCTGTTGTTGTTTCCCAGCTACAACCAACTAAAGACACAAATGGCGTTCTGCAAGGGGACTCTGGG AGGAGTTTTCCAGAATGCAATTCCGAGTGAGCAAATCGCATAGCTGTAGAATGTGCGTGCTTTTTTGTGGACACAGGAGCTCCTCCAGGA GCAGGCTGGGATCCCAACTATCGCTTGTTGCCTCTTTTTCAAGTGGAATTTGAATTTTAAATAAACAACTTTTTTTGGCATGATAAACAG >In-frame_ENST00000302463_ENST00000157600_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=668AA_start in transcript=196_stop in transcript=2202 MPYATIIPRSDLNGLPSPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSP STVLYTATQHTPTSITLTVRRTKPKKRKKSPEKGRAAPKTKKIKAFREGSRKSLRMKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFT NQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFE VNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPNAEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDH CLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGT EGAFYRRRQLMHQLPIYDQDPSRCRGLLENELKLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSK EVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQRVEDLA -------------------------------------------------------------- >In-frame_ENST00000302463_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(transcript)=1849nt_BP=1147nt GGCAGTACCAGGGATTAGGGTCTGGGCTGGAAAAATCCTGGTGTTTTGAATATGTTCAGGTCCAGTTCAGACTCTTGATCCCACAGCCAC TTCTTGAGTGAGCCCTGAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAG GCATGGGTGTCGAGGACTGCCTTATGCTACGATCATCCCTCGTTCTGACCTGAATGGCCTGCCGTCGCCTGTAGAGGAACGCTGTGGAGA CAGCCCGAACTCTGAAGGAGAAACTGTACCTACCTGGTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAG GGGAATGAGCAGGGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGA TGAGGAGCTTTCTCCTTCCACTGTGTTGTATACAGCAACACAGCACACACCTACAAGCATCACCTTAACTGTTAGAAGAACCAAACCCAA GAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAAATCAAGGCATTTCGAGAGGGATCCCGGAAGTCCTTGCG GATGAAGAATTCTCCCTCTGAAGCACAGAATTTAGATGAGAATACAACTGAGGGCTGGGAAAATCGGATAAGACTATGGACTGACCAGTA TGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGTACAGAACGCGCTTGAACAACACCTACATTCTAGCAAGGAATTTGTGGGCAAACC TACTATTTTAGACACTATTAATAAGACTGAATTGGCCTGTAATAACACAGTTATTGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCAC TCGTGTTCAAAAGCACCGGAAGATCCTGAGGGCTGCAAGAGATTTGGCTTTGGACACTCTTATAATAGAGTATCGTGGGAAAGTCATGTT ACGACAGCAATTTGAGGTCAATGGGCATTTCTTCAAAAAACCATACCCCTTTGTGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGTG TGTGGATGCCCGTACTTTCGGTAATGATGCTCGGTTCATCAGAAGATCATGTACACCAAATGCAGAGATGTCCCTGGGCCAGCTGCAGTC AGCAAGAGGTGTGGCATGTTTGGGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAGTCTTGCAAATG CAGCCAAGAGGACCACTGCCTAACATCTGACCTAGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCAC TGCTCGGGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGGATGATCATGACCAACCCTATTGCTACTGGGAAAGATCCCAC TTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGACTGCAGTACATGGAGCTCATCCCCAAGGAGAAGCA GCCAGTGACAGGCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGCCG TGGACTTTTGGAGAATGAGTTGAAACTGATGGAAGAATTTGTCAAGCAATATAAGAGCGAGGCCCTCGGCGTGGGAGAAGTGGCCCTCCC GGGGCAGGGTGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAAAAGCCAGAGGGGGCAGAGACCACTGCTGCTACCACCAACGGCAGTCT >In-frame_ENST00000302463_ENST00000535732_TCGA-LL-A8F5-01A_SETD5_chr3_9483929_+_LMCD1_chr3_8574423_length(amino acids)=551AA_start in transcript=196_stop in transcript=1848 MPYATIIPRSDLNGLPSPVEERCGDSPNSEGETVPTWCPCGLSQDGFLLNCDKCRGMSRGKVIRLHRRKQDNISGGDSSATESWDEELSP STVLYTATQHTPTSITLTVRRTKPKKRKKSPEKGRAAPKTKKIKAFREGSRKSLRMKNSPSEAQNLDENTTEGWENRIRLWTDQYEEAFT NQYSADVQNALEQHLHSSKEFVGKPTILDTINKTELACNNTVIGSQMQLQLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMLRQQFE VNGHFFKKPYPFVLFYSKFNGVEMCVDARTFGNDARFIRRSCTPNAEMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDH CLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGT EGAFYRRRQLMHQLPIYDQDPSRCRGLLENELKLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SETD5-LMCD1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SETD5-LMCD1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SETD5-LMCD1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SETD5 | C3810406 | MENTAL RETARDATION, AUTOSOMAL DOMINANT 23 | 5 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | SETD5 | C0270972 | Cornelia De Lange Syndrome | 1 | ORPHANET |
Hgene | SETD5 | C1535926 | Neurodevelopmental Disorders | 1 | CTD_human |
Tgene | LMCD1 | C0026266 | Mitral Valve Insufficiency | 1 | CTD_human |
Tgene | LMCD1 | C0026267 | Mitral Valve Prolapse Syndrome | 1 | CTD_human |