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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SF1-C11orf85 (FusionGDB2 ID:80429)

Fusion Gene Summary for SF1-C11orf85

check button Fusion gene summary
Fusion gene informationFusion gene name: SF1-C11orf85
Fusion gene ID: 80429
HgeneTgene
Gene symbol

SF1

C11orf85

Gene ID

7536

283129

Gene namesplicing factor 1membrane anchored junction protein
SynonymsBBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162C11orf85
Cytomap

11q13.1

11q13.1

Type of geneprotein-codingprotein-coding
Descriptionsplicing factor 1mammalian branch point-binding proteintranscription factor ZFM1zinc finger gene in MEN1 locuszinc finger protein 162membrane-anchored junction protein
Modification date2020031820200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000377387, ENST00000377390, 
ENST00000377394, ENST00000227503, 
ENST00000334944, ENST00000422298, 
ENST00000433274, ENST00000489544, 
ENST00000530444, ENST00000536065, 
ENST00000432175, ENST00000301896, 
Fusion gene scores* DoF score21 X 11 X 13=30035 X 6 X 4=120
# samples 268
** MAII scorelog2(26/3003*10)=-3.52982094652869
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/120*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SF1 [Title/Abstract] AND C11orf85 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSF1(64540901)-C11orf85(64706045), # samples:1
SF1(64540902)-C11orf85(64706045), # samples:1
Anticipated loss of major functional domain due to fusion event.SF1-C11orf85 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across SF1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across C11orf85 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-61-1917SF1chr11

64540901

-C11orf85chr11

64706045

-
ChimerDB4OVTCGA-61-1917-01ASF1chr11

64540902

-C11orf85chr11

64706045

-


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Fusion Gene ORF analysis for SF1-C11orf85

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000377387ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
Frame-shiftENST00000377387ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377387ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377387ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
In-frameENST00000377390ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
Frame-shiftENST00000377390ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377390ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377390ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
In-frameENST00000377394ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
Frame-shiftENST00000377394ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377394ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377394ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
In-frameENST00000227503ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
Frame-shiftENST00000227503ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000227503ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000227503ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
In-frameENST00000334944ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
Frame-shiftENST00000334944ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000334944ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000334944ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3CDSENST00000422298ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3CDSENST00000422298ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3UTRENST00000422298ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3UTRENST00000422298ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
Frame-shiftENST00000433274ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
In-frameENST00000433274ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000433274ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000433274ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3CDSENST00000489544ENST00000530444SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3CDSENST00000489544ENST00000536065SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3UTRENST00000489544ENST00000432175SF1chr11

64540901

-C11orf85chr11

64706045

-
intron-3UTRENST00000489544ENST00000301896SF1chr11

64540901

-C11orf85chr11

64706045

-
In-frameENST00000377387ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
Frame-shiftENST00000377387ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377387ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377387ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
In-frameENST00000377390ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
Frame-shiftENST00000377390ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377390ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377390ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
In-frameENST00000377394ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
Frame-shiftENST00000377394ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377394ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000377394ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
In-frameENST00000227503ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
Frame-shiftENST00000227503ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000227503ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000227503ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
In-frameENST00000334944ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
Frame-shiftENST00000334944ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000334944ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000334944ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3CDSENST00000422298ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3CDSENST00000422298ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3UTRENST00000422298ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3UTRENST00000422298ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
Frame-shiftENST00000433274ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
In-frameENST00000433274ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000433274ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
5CDS-3UTRENST00000433274ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3CDSENST00000489544ENST00000530444SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3CDSENST00000489544ENST00000536065SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3UTRENST00000489544ENST00000432175SF1chr11

64540902

-C11orf85chr11

64706045

-
intron-3UTRENST00000489544ENST00000301896SF1chr11

64540902

-C11orf85chr11

64706045

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000377387SF1chr1164540901-ENST00000530444C11orf85chr1164706045-10326887962265
ENST00000377390SF1chr1164540901-ENST00000530444C11orf85chr1164706045-91857468259207
ENST00000377394SF1chr1164540901-ENST00000530444C11orf85chr1164706045-93559169976207
ENST00000227503SF1chr1164540901-ENST00000530444C11orf85chr1164706045-93559169976207
ENST00000334944SF1chr1164540901-ENST00000530444C11orf85chr1164706045-974630738115207
ENST00000433274SF1chr1164540901-ENST00000536065C11orf85chr1164706045-810467575249108
ENST00000377387SF1chr1164540902-ENST00000530444C11orf85chr1164706045-10326887962265
ENST00000377390SF1chr1164540902-ENST00000530444C11orf85chr1164706045-91857468259207
ENST00000377394SF1chr1164540902-ENST00000530444C11orf85chr1164706045-93559169976207
ENST00000227503SF1chr1164540902-ENST00000530444C11orf85chr1164706045-93559169976207
ENST00000334944SF1chr1164540902-ENST00000530444C11orf85chr1164706045-974630738115207
ENST00000433274SF1chr1164540902-ENST00000536065C11orf85chr1164706045-810467575249108

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000377387ENST00000530444SF1chr1164540901-C11orf85chr1164706045-0.0506516360.94934833
ENST00000377390ENST00000530444SF1chr1164540901-C11orf85chr1164706045-0.289194730.71080524
ENST00000377394ENST00000530444SF1chr1164540901-C11orf85chr1164706045-0.385022370.6149776
ENST00000227503ENST00000530444SF1chr1164540901-C11orf85chr1164706045-0.385022370.6149776
ENST00000334944ENST00000530444SF1chr1164540901-C11orf85chr1164706045-0.353073630.6469264
ENST00000433274ENST00000536065SF1chr1164540901-C11orf85chr1164706045-0.54159580.45840415
ENST00000377387ENST00000530444SF1chr1164540902-C11orf85chr1164706045-0.0506516360.94934833
ENST00000377390ENST00000530444SF1chr1164540902-C11orf85chr1164706045-0.289194730.71080524
ENST00000377394ENST00000530444SF1chr1164540902-C11orf85chr1164706045-0.385022370.6149776
ENST00000227503ENST00000530444SF1chr1164540902-C11orf85chr1164706045-0.385022370.6149776
ENST00000334944ENST00000530444SF1chr1164540902-C11orf85chr1164706045-0.353073630.6469264
ENST00000433274ENST00000536065SF1chr1164540902-C11orf85chr1164706045-0.54159580.45840415

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Fusion Genomic Features for SF1-C11orf85


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SF1-C11orf85


check button Go to

FGviewer for the breakpoints of chr11:64540901-chr11:64706045

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSF1chr11:64540901chr11:64706045ENST00000227503-31315_1978.66666666666667549.0MotifNuclear localization signal
HgeneSF1chr11:64540901chr11:64706045ENST00000334944-31415_1978.66666666666667639.0MotifNuclear localization signal
HgeneSF1chr11:64540901chr11:64706045ENST00000377387-31315_19203.66666666666666674.0MotifNuclear localization signal
HgeneSF1chr11:64540901chr11:64706045ENST00000377390-31315_1978.66666666666667640.0MotifNuclear localization signal
HgeneSF1chr11:64540901chr11:64706045ENST00000377394-31315_1978.66666666666667572.0MotifNuclear localization signal
HgeneSF1chr11:64540901chr11:64706045ENST00000433274-31315_1952.666666666666664614.0MotifNuclear localization signal
HgeneSF1chr11:64540902chr11:64706045ENST00000227503-31315_1978.66666666666667549.0MotifNuclear localization signal
HgeneSF1chr11:64540902chr11:64706045ENST00000334944-31415_1978.66666666666667639.0MotifNuclear localization signal
HgeneSF1chr11:64540902chr11:64706045ENST00000377387-31315_19203.66666666666666674.0MotifNuclear localization signal
HgeneSF1chr11:64540902chr11:64706045ENST00000377390-31315_1978.66666666666667640.0MotifNuclear localization signal
HgeneSF1chr11:64540902chr11:64706045ENST00000377394-31315_1978.66666666666667572.0MotifNuclear localization signal
HgeneSF1chr11:64540902chr11:64706045ENST00000433274-31315_1952.666666666666664614.0MotifNuclear localization signal

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSF1chr11:64540901chr11:64706045ENST00000227503-313324_63778.66666666666667549.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540901chr11:64706045ENST00000334944-314324_63778.66666666666667639.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540901chr11:64706045ENST00000377387-313324_637203.66666666666666674.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540901chr11:64706045ENST00000377390-313324_63778.66666666666667640.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540901chr11:64706045ENST00000377394-313324_63778.66666666666667572.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540901chr11:64706045ENST00000433274-313324_63752.666666666666664614.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540902chr11:64706045ENST00000227503-313324_63778.66666666666667549.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540902chr11:64706045ENST00000334944-314324_63778.66666666666667639.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540902chr11:64706045ENST00000377387-313324_637203.66666666666666674.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540902chr11:64706045ENST00000377390-313324_63778.66666666666667640.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540902chr11:64706045ENST00000377394-313324_63778.66666666666667572.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540902chr11:64706045ENST00000433274-313324_63752.666666666666664614.0Compositional biasNote=Pro-rich
HgeneSF1chr11:64540901chr11:64706045ENST00000227503-313141_22278.66666666666667549.0DomainKH
HgeneSF1chr11:64540901chr11:64706045ENST00000334944-314141_22278.66666666666667639.0DomainKH
HgeneSF1chr11:64540901chr11:64706045ENST00000377387-313141_222203.66666666666666674.0DomainKH
HgeneSF1chr11:64540901chr11:64706045ENST00000377390-313141_22278.66666666666667640.0DomainKH
HgeneSF1chr11:64540901chr11:64706045ENST00000377394-313141_22278.66666666666667572.0DomainKH
HgeneSF1chr11:64540901chr11:64706045ENST00000433274-313141_22252.666666666666664614.0DomainKH
HgeneSF1chr11:64540902chr11:64706045ENST00000227503-313141_22278.66666666666667549.0DomainKH
HgeneSF1chr11:64540902chr11:64706045ENST00000334944-314141_22278.66666666666667639.0DomainKH
HgeneSF1chr11:64540902chr11:64706045ENST00000377387-313141_222203.66666666666666674.0DomainKH
HgeneSF1chr11:64540902chr11:64706045ENST00000377390-313141_22278.66666666666667640.0DomainKH
HgeneSF1chr11:64540902chr11:64706045ENST00000377394-313141_22278.66666666666667572.0DomainKH
HgeneSF1chr11:64540902chr11:64706045ENST00000433274-313141_22252.666666666666664614.0DomainKH
HgeneSF1chr11:64540901chr11:64706045ENST00000227503-313277_29678.66666666666667549.0Zinc fingerCCHC-type
HgeneSF1chr11:64540901chr11:64706045ENST00000334944-314277_29678.66666666666667639.0Zinc fingerCCHC-type
HgeneSF1chr11:64540901chr11:64706045ENST00000377387-313277_296203.66666666666666674.0Zinc fingerCCHC-type
HgeneSF1chr11:64540901chr11:64706045ENST00000377390-313277_29678.66666666666667640.0Zinc fingerCCHC-type
HgeneSF1chr11:64540901chr11:64706045ENST00000377394-313277_29678.66666666666667572.0Zinc fingerCCHC-type
HgeneSF1chr11:64540901chr11:64706045ENST00000433274-313277_29652.666666666666664614.0Zinc fingerCCHC-type
HgeneSF1chr11:64540902chr11:64706045ENST00000227503-313277_29678.66666666666667549.0Zinc fingerCCHC-type
HgeneSF1chr11:64540902chr11:64706045ENST00000334944-314277_29678.66666666666667639.0Zinc fingerCCHC-type
HgeneSF1chr11:64540902chr11:64706045ENST00000377387-313277_296203.66666666666666674.0Zinc fingerCCHC-type
HgeneSF1chr11:64540902chr11:64706045ENST00000377390-313277_29678.66666666666667640.0Zinc fingerCCHC-type
HgeneSF1chr11:64540902chr11:64706045ENST00000377394-313277_29678.66666666666667572.0Zinc fingerCCHC-type
HgeneSF1chr11:64540902chr11:64706045ENST00000433274-313277_29652.666666666666664614.0Zinc fingerCCHC-type
TgeneC11orf85chr11:64540901chr11:64706045ENST00000301896911171_176217.33333333333334272.3333333333333Topological domainPerinuclear space
TgeneC11orf85chr11:64540901chr11:64706045ENST000003018969111_151217.33333333333334272.3333333333333Topological domainNuclear
TgeneC11orf85chr11:64540901chr11:64706045ENST00000432175810171_176217.33333333333334235.66666666666666Topological domainPerinuclear space
TgeneC11orf85chr11:64540901chr11:64706045ENST000004321758101_151217.33333333333334235.66666666666666Topological domainNuclear
TgeneC11orf85chr11:64540902chr11:64706045ENST00000301896911171_176217.33333333333334272.3333333333333Topological domainPerinuclear space
TgeneC11orf85chr11:64540902chr11:64706045ENST000003018969111_151217.33333333333334272.3333333333333Topological domainNuclear
TgeneC11orf85chr11:64540902chr11:64706045ENST00000432175810171_176217.33333333333334235.66666666666666Topological domainPerinuclear space
TgeneC11orf85chr11:64540902chr11:64706045ENST000004321758101_151217.33333333333334235.66666666666666Topological domainNuclear
TgeneC11orf85chr11:64540901chr11:64706045ENST00000301896911152_170217.33333333333334272.3333333333333TransmembraneHelical
TgeneC11orf85chr11:64540901chr11:64706045ENST00000432175810152_170217.33333333333334235.66666666666666TransmembraneHelical
TgeneC11orf85chr11:64540902chr11:64706045ENST00000301896911152_170217.33333333333334272.3333333333333TransmembraneHelical
TgeneC11orf85chr11:64540902chr11:64706045ENST00000432175810152_170217.33333333333334235.66666666666666TransmembraneHelical


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Fusion Gene Sequence for SF1-C11orf85


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000377387_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(transcript)=1032nt_BP=688nt
CCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAG
CGAACGCCACGCCGTTGGGTAAGCTGGGCCCCCCCGGGCTGCCCCCGCTCCCCGGGCCCAAAGGAGGCTTCGAGCCGGGCCCTCCGCCTG
CACCCGGGCCTGGGGCGGGGCTGCTGGCTCCCGGGCCGCCGCCGCCCCCGCCCGTGGGCTCGATGGGGGCCCTGACCGCGGCCTTCCCCT
TCGCGGCGCTGCCTCCGCCGCCTCCGCCGCCGCCCCCTCCGCCTCCCCAGCAGCCGCCGCCGCCTCCACCGCCACCGTCCCCCGGCGCCT
CGTACCCGCCGCCGCAGCCGCCCCCTCCGCCGCCGCTCTACCAGCGCGTGTCGCCGCCGCAGCCGCCGCCACCCCAGCCGCCGCGTAAGG
ACCAGCAGCCGGGCCCGGCCGGCGGCGGAGGAGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGA
AGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAG
ACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGA
AGAGCAGCCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACT
CTATCCTTTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATA
ATAGATTTTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGG

>In-frame_ENST00000377387_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(amino acids)=265AA_start in transcript=796_stop in transcript=2
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVSSAAGRARLLVLTRRLGWRRLRRRHALVERRRRGRLRRRVRGAGGRWRWRRRRLLGRRRGRRRRRRRQRREGEGR

--------------------------------------------------------------
>In-frame_ENST00000377390_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(transcript)=918nt_BP=574nt
ACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAG
GCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCCGCGGTGCCCTCTCTCCT
CCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGCCGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCC
GGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCA
CGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTA
CAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAG
GAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAGCCACTCTTGAGCCTTCC
AAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCTTTTCTTATGACACTTCA
GTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATTTTTTCCCCCAATTTAAA
ACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAGGATCCTAATGACAATAA

>In-frame_ENST00000377390_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=682_stop in transcript=59
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000377394_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(transcript)=935nt_BP=591nt
GCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGA
GGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCC
GCGGTGCCCTCTCTCCTCCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGCCGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCAT
TCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGC
GACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGT
GATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGAC
TCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAG
CCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCT
TTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATT
TTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAG

>In-frame_ENST00000377394_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=699_stop in transcript=76
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000227503_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(transcript)=935nt_BP=591nt
GCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGA
GGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCC
GCGGTGCCCTCTCTCCTCCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGCCGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCAT
TCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGC
GACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGT
GATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGAC
TCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAG
CCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCT
TTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATT
TTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAG

>In-frame_ENST00000227503_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=699_stop in transcript=76
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000334944_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(transcript)=974nt_BP=630nt
CGGAGCTCAGTTCACGCAGTAACAAATGAAGTGCGCGCTGCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTA
ACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCC
CAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCCGCGGTGCCCTCTCTCCTCCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGC
CGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGA
AAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAG
GAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGA
AAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG
CTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAGCCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTA
GTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCTTTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTC
TGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATTTTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGT

>In-frame_ENST00000334944_ENST00000530444_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=738_stop in transcript=115
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000433274_ENST00000536065_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(transcript)=810nt_BP=467nt
GACGCAGTGAGGTGGCCGGGCTGTGCGGCGCAACTGTATAGACTGGGGGCCCACTATTGCTGTCCAGTCCGCTGGTGTCGGGAACAGGGG
TGGCGGGTGTTCAGCGCTGGACGGGGTGCTAGCTGTGAATGCCAGCAGGGCGTGAAAGCCTCACCTGATGACGTGCAGCGACTCCCTTCT
GGTCTTGAGGAACCAGAATGGGAACCGTACCAAGGATAGCTCCTCTGCTTCTACAGCAAGGCAGGGTTTTCATCCGGGAGAGACTTCCCA
AGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGA
CTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCC
CCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAGCCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAA
GAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCTTTTCTTATGACACTTCAGTCGTGGGGAATGAGGT
CCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATTTTTTCCCCCAATTTAAAACATTAAGAATGGAACT
TTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAGGATCCTAATGACAATAAATTATTTATGAAGAGTT

>In-frame_ENST00000433274_ENST00000536065_TCGA-61-1917_SF1_chr11_64540901_-_C11orf85_chr11_64706045_length(amino acids)=108AA_start in transcript=575_stop in transcript=249
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC

--------------------------------------------------------------
>In-frame_ENST00000377387_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(transcript)=1032nt_BP=688nt
CCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAG
CGAACGCCACGCCGTTGGGTAAGCTGGGCCCCCCCGGGCTGCCCCCGCTCCCCGGGCCCAAAGGAGGCTTCGAGCCGGGCCCTCCGCCTG
CACCCGGGCCTGGGGCGGGGCTGCTGGCTCCCGGGCCGCCGCCGCCCCCGCCCGTGGGCTCGATGGGGGCCCTGACCGCGGCCTTCCCCT
TCGCGGCGCTGCCTCCGCCGCCTCCGCCGCCGCCCCCTCCGCCTCCCCAGCAGCCGCCGCCGCCTCCACCGCCACCGTCCCCCGGCGCCT
CGTACCCGCCGCCGCAGCCGCCCCCTCCGCCGCCGCTCTACCAGCGCGTGTCGCCGCCGCAGCCGCCGCCACCCCAGCCGCCGCGTAAGG
ACCAGCAGCCGGGCCCGGCCGGCGGCGGAGGAGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGA
AGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAG
ACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGA
AGAGCAGCCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACT
CTATCCTTTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATA
ATAGATTTTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGG

>In-frame_ENST00000377387_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(amino acids)=265AA_start in transcript=796_stop in transcript=2
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVSSAAGRARLLVLTRRLGWRRLRRRHALVERRRRGRLRRRVRGAGGRWRWRRRRLLGRRRGRRRRRRRQRREGEGR

--------------------------------------------------------------
>In-frame_ENST00000377390_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(transcript)=918nt_BP=574nt
ACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAG
GCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCCGCGGTGCCCTCTCTCCT
CCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGCCGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCC
GGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCA
CGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTA
CAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAG
GAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAGCCACTCTTGAGCCTTCC
AAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCTTTTCTTATGACACTTCA
GTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATTTTTTCCCCCAATTTAAA
ACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAGGATCCTAATGACAATAA

>In-frame_ENST00000377390_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=682_stop in transcript=59
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000377394_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(transcript)=935nt_BP=591nt
GCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGA
GGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCC
GCGGTGCCCTCTCTCCTCCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGCCGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCAT
TCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGC
GACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGT
GATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGAC
TCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAG
CCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCT
TTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATT
TTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAG

>In-frame_ENST00000377394_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=699_stop in transcript=76
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000227503_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(transcript)=935nt_BP=591nt
GCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGA
GGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCC
GCGGTGCCCTCTCTCCTCCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGCCGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCAT
TCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGC
GACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGT
GATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGAC
TCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAG
CCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCT
TTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATT
TTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAG

>In-frame_ENST00000227503_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=699_stop in transcript=76
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000334944_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(transcript)=974nt_BP=630nt
CGGAGCTCAGTTCACGCAGTAACAAATGAAGTGCGCGCTGCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTA
ACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCC
CAATCCAGGCCCCGGCCCCGCCGCCCCCGGCCCGCCCCCGCGGTGCCCTCTCTCCTCCCTCTTTGTGCGTCTCGCGCCGCCGCCGCCCGC
CGCGTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGA
AAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAG
GAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGA
AAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG
CTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAGCCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAAGAGGATCATCTCTTGTA
GTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCTTTTCTTATGACACTTCAGTCGTGGGGAATGAGGTCCCCATGCTGAGTCCTC
TGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATTTTTTCCCCCAATTTAAAACATTAAGAATGGAACTTTCTAAAATGTTCATGT

>In-frame_ENST00000334944_ENST00000530444_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(amino acids)=207AA_start in transcript=738_stop in transcript=115
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC
VLVPAAPLPLLTWEVQRRGVRSGRHGAPGDRHRHLLFLCGGFSFASLPGGGDPNALPERAEPVLSRGGRRRRETHKEGGERAPRGRAGGG

--------------------------------------------------------------
>In-frame_ENST00000433274_ENST00000536065_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(transcript)=810nt_BP=467nt
GACGCAGTGAGGTGGCCGGGCTGTGCGGCGCAACTGTATAGACTGGGGGCCCACTATTGCTGTCCAGTCCGCTGGTGTCGGGAACAGGGG
TGGCGGGTGTTCAGCGCTGGACGGGGTGCTAGCTGTGAATGCCAGCAGGGCGTGAAAGCCTCACCTGATGACGTGCAGCGACTCCCTTCT
GGTCTTGAGGAACCAGAATGGGAACCGTACCAAGGATAGCTCCTCTGCTTCTACAGCAAGGCAGGGTTTTCATCCGGGAGAGACTTCCCA
AGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGA
CTTACTCGAGAACAAGAAAGAGCTTATATAGTGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCC
CCTAACCCTGAGGACAGCTCTCTCTTCCCGTTTCGATATTTCTTCAGGAAGAGCAGCCACTCTTGAGCCTTCCAAATGCAGCGCTGGAAA
GAGGATCATCTCTTGTAGTGACTCCTCCCGAGCCATTCTTCCTCCAACTCTATCCTTTTCTTATGACACTTCAGTCGTGGGGAATGAGGT
CCCCATGCTGAGTCCTCTGTGGTTTTATCGTGTCCTTTGCCCCTTTATAATAGATTTTTTCCCCCAATTTAAAACATTAAGAATGGAACT
TTCTAAAATGTTCATGTCCTGAGGGCCGGTTTAGGCCTTTTGTCTTCGGCACTTAGGATCCTAATGACAATAAATTATTTATGAAGAGTT

>In-frame_ENST00000433274_ENST00000536065_TCGA-61-1917-01A_SF1_chr11_64540902_-_C11orf85_chr11_64706045_length(amino acids)=108AA_start in transcript=575_stop in transcript=249
MAREESLQEMILFPALHLEGSRVAALPEEISKREERAVLRVRGDAQVSCAQFTSQVFYLQLHYISSFLFSSKSRGNNCRHSWNHCLLFHC

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Fusion Gene PPI Analysis for SF1-C11orf85


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SF1-C11orf85


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SF1-C11orf85


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSF1C0025202melanoma1CTD_human