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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SF3B1-SATB2 (FusionGDB2 ID:80475)

Fusion Gene Summary for SF3B1-SATB2

check button Fusion gene summary
Fusion gene informationFusion gene name: SF3B1-SATB2
Fusion gene ID: 80475
HgeneTgene
Gene symbol

SF3B1

SATB2

Gene ID

23451

23314

Gene namesplicing factor 3b subunit 1SATB homeobox 2
SynonymsHsh155|MDS|PRP10|PRPF10|SAP155|SF3b155GLSS
Cytomap

2q33.1

2q33.1

Type of geneprotein-codingprotein-coding
Descriptionsplicing factor 3B subunit 1pre-mRNA processing 10pre-mRNA splicing factor SF3b, 155 kDa subunitspliceosome-associated protein 155splicing factor 3b, subunit 1, 155kDaDNA-binding protein SATB2SATB family member 2special AT-rich sequence-binding protein 2
Modification date2020032920200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000335508, ENST00000462613, 
ENST00000409915, ENST00000414963, 
ENST00000487698, 		ENST00000417098, 
ENST00000443023, ENST00000260926, 
ENST00000428695, ENST00000457245, 
ENST00000484124, 
Fusion gene scores* DoF score8 X 12 X 3=2884 X 6 X 3=72
# samples 137
** MAII scorelog2(13/288*10)=-1.14755718841386
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(7/72*10)=-0.0406419844973459
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SF3B1 [Title/Abstract] AND SATB2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSF3B1(198283233)-SATB2(200173680), # samples:1
SF3B1(198283232)-SATB2(200173680), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSF3B1

GO:0000398

mRNA splicing, via spliceosome

11252167|28781166|29360106


check buttonFusion gene breakpoints across SF3B1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SATB2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-VQ-A92D-01ASF3B1chr2

198283233

-SATB2chr2

200173680

-
ChimerDB4STADTCGA-VQ-A92DSF3B1chr2

198283232

-SATB2chr2

200173680

-


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Fusion Gene ORF analysis for SF3B1-SATB2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000335508ENST00000417098SF3B1chr2

198283233

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000443023SF3B1chr2

198283233

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000260926SF3B1chr2

198283233

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000428695SF3B1chr2

198283233

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000457245SF3B1chr2

198283233

-SATB2chr2

200173680

-
5CDS-intronENST00000335508ENST00000484124SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000417098SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000443023SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000260926SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000428695SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000457245SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-intronENST00000462613ENST00000484124SF3B1chr2

198283233

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000417098SF3B1chr2

198283233

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000443023SF3B1chr2

198283233

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000260926SF3B1chr2

198283233

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000428695SF3B1chr2

198283233

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000457245SF3B1chr2

198283233

-SATB2chr2

200173680

-
3UTR-intronENST00000409915ENST00000484124SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000417098SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000443023SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000260926SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000428695SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000457245SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-intronENST00000414963ENST00000484124SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000417098SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000443023SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000260926SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000428695SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000457245SF3B1chr2

198283233

-SATB2chr2

200173680

-
intron-intronENST00000487698ENST00000484124SF3B1chr2

198283233

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000417098SF3B1chr2

198283232

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000443023SF3B1chr2

198283232

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000260926SF3B1chr2

198283232

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000428695SF3B1chr2

198283232

-SATB2chr2

200173680

-
In-frameENST00000335508ENST00000457245SF3B1chr2

198283232

-SATB2chr2

200173680

-
5CDS-intronENST00000335508ENST00000484124SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000417098SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000443023SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000260926SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000428695SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000462613ENST00000457245SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-intronENST00000462613ENST00000484124SF3B1chr2

198283232

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000417098SF3B1chr2

198283232

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000443023SF3B1chr2

198283232

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000260926SF3B1chr2

198283232

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000428695SF3B1chr2

198283232

-SATB2chr2

200173680

-
3UTR-3CDSENST00000409915ENST00000457245SF3B1chr2

198283232

-SATB2chr2

200173680

-
3UTR-intronENST00000409915ENST00000484124SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000417098SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000443023SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000260926SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000428695SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000414963ENST00000457245SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-intronENST00000414963ENST00000484124SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000417098SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000443023SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000260926SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000428695SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-3CDSENST00000487698ENST00000457245SF3B1chr2

198283232

-SATB2chr2

200173680

-
intron-intronENST00000487698ENST00000484124SF3B1chr2

198283232

-SATB2chr2

200173680

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000335508SF3B1chr2198283233-ENST00000417098SATB2chr2200173680-3958587711246391
ENST00000335508SF3B1chr2198283233-ENST00000443023SATB2chr2200173680-3950587711246391
ENST00000335508SF3B1chr2198283233-ENST00000260926SATB2chr2200173680-3950587711246391
ENST00000335508SF3B1chr2198283233-ENST00000428695SATB2chr2200173680-1483587711246391
ENST00000335508SF3B1chr2198283233-ENST00000457245SATB2chr2200173680-1308587711246391
ENST00000335508SF3B1chr2198283232-ENST00000417098SATB2chr2200173680-3958587711246391
ENST00000335508SF3B1chr2198283232-ENST00000443023SATB2chr2200173680-3950587711246391
ENST00000335508SF3B1chr2198283232-ENST00000260926SATB2chr2200173680-3950587711246391
ENST00000335508SF3B1chr2198283232-ENST00000428695SATB2chr2200173680-1483587711246391
ENST00000335508SF3B1chr2198283232-ENST00000457245SATB2chr2200173680-1308587711246391

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000335508ENST00000417098SF3B1chr2198283233-SATB2chr2200173680-0.0001931980.9998068
ENST00000335508ENST00000443023SF3B1chr2198283233-SATB2chr2200173680-0.0001926980.9998073
ENST00000335508ENST00000260926SF3B1chr2198283233-SATB2chr2200173680-0.0001926980.9998073
ENST00000335508ENST00000428695SF3B1chr2198283233-SATB2chr2200173680-0.0022070710.99779296
ENST00000335508ENST00000457245SF3B1chr2198283233-SATB2chr2200173680-0.0037471720.9962528
ENST00000335508ENST00000417098SF3B1chr2198283232-SATB2chr2200173680-0.0001931980.9998068
ENST00000335508ENST00000443023SF3B1chr2198283232-SATB2chr2200173680-0.0001926980.9998073
ENST00000335508ENST00000260926SF3B1chr2198283232-SATB2chr2200173680-0.0001926980.9998073
ENST00000335508ENST00000428695SF3B1chr2198283232-SATB2chr2200173680-0.0022070710.99779296
ENST00000335508ENST00000457245SF3B1chr2198283232-SATB2chr2200173680-0.0037471720.9962528

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Fusion Genomic Features for SF3B1-SATB2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SF3B1-SATB2


check button Go to

FGviewer for the breakpoints of chr2:198283233-chr2:200173680

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-671010_1048183.6666666666666688.0RepeatNote=HEAT 8
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-671052_1090183.6666666666666688.0RepeatNote=HEAT 9
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-671122_1160183.6666666666666688.0RepeatNote=HEAT 10
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-671163_1201183.6666666666666688.0RepeatNote=HEAT 11
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67569_603183.6666666666666688.0RepeatNote=HEAT 2
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67604_641183.6666666666666688.0RepeatNote=HEAT 3
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67643_677183.6666666666666688.0RepeatNote=HEAT 4
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67680_718183.6666666666666688.0RepeatNote=HEAT 5
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67763_801183.6666666666666688.0RepeatNote=HEAT 6
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67843_881183.6666666666666688.0RepeatNote=HEAT 7
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-671010_1048183.6666666666666688.0RepeatNote=HEAT 8
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-671052_1090183.6666666666666688.0RepeatNote=HEAT 9
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-671122_1160183.6666666666666688.0RepeatNote=HEAT 10
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-671163_1201183.6666666666666688.0RepeatNote=HEAT 11
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67569_603183.6666666666666688.0RepeatNote=HEAT 2
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67604_641183.6666666666666688.0RepeatNote=HEAT 3
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67643_677183.6666666666666688.0RepeatNote=HEAT 4
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67680_718183.6666666666666688.0RepeatNote=HEAT 5
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67763_801183.6666666666666688.0RepeatNote=HEAT 6
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67843_881183.6666666666666688.0RepeatNote=HEAT 7
TgeneSATB2chr2:198283232chr2:200173680ENST00000260926912615_674514.0734.0DNA bindingHomeobox
TgeneSATB2chr2:198283232chr2:200173680ENST00000417098811615_674514.0734.0DNA bindingHomeobox
TgeneSATB2chr2:198283232chr2:200173680ENST00000457245912615_674514.0734.0DNA bindingHomeobox
TgeneSATB2chr2:198283233chr2:200173680ENST00000260926912615_674514.0734.0DNA bindingHomeobox
TgeneSATB2chr2:198283233chr2:200173680ENST00000417098811615_674514.0734.0DNA bindingHomeobox
TgeneSATB2chr2:198283233chr2:200173680ENST00000457245912615_674514.0734.0DNA bindingHomeobox

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-5251010_1048165.01305.0RepeatNote=HEAT 8
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-5251052_1090165.01305.0RepeatNote=HEAT 9
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-5251122_1160165.01305.0RepeatNote=HEAT 10
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-5251163_1201165.01305.0RepeatNote=HEAT 11
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525569_603165.01305.0RepeatNote=HEAT 2
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525604_641165.01305.0RepeatNote=HEAT 3
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525643_677165.01305.0RepeatNote=HEAT 4
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525680_718165.01305.0RepeatNote=HEAT 5
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525763_801165.01305.0RepeatNote=HEAT 6
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525843_881165.01305.0RepeatNote=HEAT 7
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-151010_10480145.0RepeatNote=HEAT 8
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-151052_10900145.0RepeatNote=HEAT 9
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-151122_11600145.0RepeatNote=HEAT 10
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-151163_12010145.0RepeatNote=HEAT 11
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15569_6030145.0RepeatNote=HEAT 2
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15604_6410145.0RepeatNote=HEAT 3
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15643_6770145.0RepeatNote=HEAT 4
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15680_7180145.0RepeatNote=HEAT 5
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15763_8010145.0RepeatNote=HEAT 6
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15843_8810145.0RepeatNote=HEAT 7
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-5251010_1048165.01305.0RepeatNote=HEAT 8
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-5251052_1090165.01305.0RepeatNote=HEAT 9
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-5251122_1160165.01305.0RepeatNote=HEAT 10
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-5251163_1201165.01305.0RepeatNote=HEAT 11
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525569_603165.01305.0RepeatNote=HEAT 2
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525604_641165.01305.0RepeatNote=HEAT 3
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525643_677165.01305.0RepeatNote=HEAT 4
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525680_718165.01305.0RepeatNote=HEAT 5
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525763_801165.01305.0RepeatNote=HEAT 6
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525843_881165.01305.0RepeatNote=HEAT 7
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-151010_10480145.0RepeatNote=HEAT 8
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-151052_10900145.0RepeatNote=HEAT 9
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-151122_11600145.0RepeatNote=HEAT 10
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-151163_12010145.0RepeatNote=HEAT 11
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15569_6030145.0RepeatNote=HEAT 2
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15604_6410145.0RepeatNote=HEAT 3
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15643_6770145.0RepeatNote=HEAT 4
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15680_7180145.0RepeatNote=HEAT 5
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15763_8010145.0RepeatNote=HEAT 6
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15843_8810145.0RepeatNote=HEAT 7
TgeneSATB2chr2:198283232chr2:200173680ENST00000260926912350_437514.0734.0DNA bindingCUT 1
TgeneSATB2chr2:198283232chr2:200173680ENST00000260926912473_560514.0734.0DNA bindingCUT 2
TgeneSATB2chr2:198283232chr2:200173680ENST00000417098811350_437514.0734.0DNA bindingCUT 1
TgeneSATB2chr2:198283232chr2:200173680ENST00000417098811473_560514.0734.0DNA bindingCUT 2
TgeneSATB2chr2:198283232chr2:200173680ENST00000457245912350_437514.0734.0DNA bindingCUT 1
TgeneSATB2chr2:198283232chr2:200173680ENST00000457245912473_560514.0734.0DNA bindingCUT 2
TgeneSATB2chr2:198283233chr2:200173680ENST00000260926912350_437514.0734.0DNA bindingCUT 1
TgeneSATB2chr2:198283233chr2:200173680ENST00000260926912473_560514.0734.0DNA bindingCUT 2
TgeneSATB2chr2:198283233chr2:200173680ENST00000417098811350_437514.0734.0DNA bindingCUT 1
TgeneSATB2chr2:198283233chr2:200173680ENST00000417098811473_560514.0734.0DNA bindingCUT 2
TgeneSATB2chr2:198283233chr2:200173680ENST00000457245912350_437514.0734.0DNA bindingCUT 1
TgeneSATB2chr2:198283233chr2:200173680ENST00000457245912473_560514.0734.0DNA bindingCUT 2


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Fusion Gene Sequence for SF3B1-SATB2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000335508_ENST00000417098_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(transcript)=3958nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC
TGAATAAGTTCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGCGTTACACTTTATCCCGTCTCTATGACTGGATCATAG
TCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTAACGGAAGTTACATCAGGCAAGTACCAGGATGAAAAGAACTATGAA
ATAAATGAAGGAAGCTACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAAATTGCATGGGACAGAG
ACTTTGCAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAAAAGACTTGTTTATGTATTAAAAAAACCACTTCACAGTGAGTCGC
TTTGGCTTTTTGATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTTGAATTCCTATTTATTTTTTGTGTTTGTCCCTGATTTTT
TTTTTTTAATTCTATGGCTTCCTATCTGGCAGCTTAATGGGTAATTTTTGAGGTATGTATTTAACAAAATAAACGACACTGCCGAAAAAA
AAAAAAGTGAAGTGAAAACAATCAGGGCACATTAAAATGATACAAGTCAAATAAATCTTAAAGACACAATGCACACTTAAAATGACTCAA
TAAAATGACTTGCTACGTTCCGTTATTCAATTTGTCATTACTGTAGTGAACAGATGCATTTCTGTGGAATTCCAAATAAGTAAAACTGAA
ATTCAGTGCAGAGAAAACTTTGTCCACTAGTGCAAGTCTTGATCAAATGACATTTTGACATTGGACATATGGAATTCATAGTATGAGCCA
CATTTTGTTGTGAAATTTATTTACCTGCTTGTGGCTTCAAATCTGAAAATTAATAAGCCTGCTCGTTTAAAAGTTGTTTGTTGTTGCTGT
TTTTTTGTCTTTTTGTTTTTTACTAGAAAATAGTTCAGTGTAATATTAAGTTAGAAAAGAAGTTGCTGCCCAGTTAAAGGGGCTCCCTCT
CAAATAAATCTCCATCCTTCCCTCTCCCAAAAGACATTTCTGATTTCTGCTTCACTTTGGGCTTCCTCTTCTTCGTACACATTCCATCTA
CCTAATCAAACATTTTCAGTCCCTGATCTCTCCTGTCCCTTTTCCTGGGATGACAGCCCTAACAAGAACTGTTTTTGAATCGTTGTGCAG
CTCCAGGCAATAGAGTATGTGAAGCGATTTCAGTAGAATCACTTACTCATCCTAAAAGAAAACATTATCCCAGTTACCTACATCGCAATT
ACCTTATGTAAAGCAGAACTAATGCTGACTGGATGTTTAATGGGATGAGCATTAAAGCTGCAATCTACTATAGTACTCCAGATCTCTTTC
GGCTTCCTATGAGAAACACCAGAAGCATTACTTTCCACTTCTACTTACAGTAATTGCAAGAGGAGACCTCACATTCAGGACTGGCCTAGT
GAACGTAATCCATGCTTTAAACTGGCCATTAAACAGTCCCACATGGTTGGATTTTTTTTTTTTTTTTGAGTTGTGCTTTCACAAAACCTT
GTCAAAGACCTCATGCAATATCACTTTGAAAGTTATTTTCTGTTTACTACACAAACATTGTAATATAACTGTTAATACTATTTATATATT
TGAAAGGTATAAAAGGTAGGAGTTAAAAAAAAAACCTCTATGTGTAGATATTAACTCAGAACTTACAATATACAGGGAGAAGACATGTTG
CAATACAAGCTAATTCTAGCTGCTCAGTAACCTCTGGAGTTTTTAAAGGGACATTTTCCTGTACTTTTTCAAATAATGATGTTTAAAAAT
TATCTTGACATAAGCGTCATATACCTTTGCAAAAGGATGGTTGTTTGCAGTTAGCCCTGGCCCCATCCTTCCTATTTCTGTAGTATGCTG
CAGCTTTAATCAGAAAGTCCATGGTTGCTGCTTCCTGATCTCCGAGTTACTCTTTCCAAATTGTCTTCTTACACTGTTGCTGAAGGTCAC
TCTGTACACGTAATGGAAACTGATTTTGCCAAGCTCTTACAAGGTGGTTCATCTATCGATGGCATCCGCATTTGGTATCTTTTACACTTC
AACCAAAAATTTATTAGGTATTTTTCAATGCTAAGTCTTGCCTTTTATTTTTTAATTTCACTGCCAAGTTTGCAGTGGTTCTAAGTGAAT
CTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCGAATTACAATGCATATATGTCTATTTATTCAATATCTGTCATATAATATCT
ATTTGGAAGAAGAAACTTTCTCTTGTAGTGCCTCTTGACAAAGCACAATTTCCCGCCTTTTTTTTTTTTTGTGAAATGAAAAAAACAAAT
TGTGTTTTATTGCGGTATCAACAATGTGAATAAGGATTAACATATTGTAAATGTTCTTTTTTCCATGTAAATCAACTATCTTTGTTATCA

>In-frame_ENST00000335508_ENST00000417098_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000443023_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(transcript)=3950nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC
TGAATAAGTTCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGCGTTACACTTTATCCCGTCTCTATGACTGGATCATAG
TCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTAACGGAAGTTACATCAGGCAAGTACCAGGATGAAAAGAACTATGAA
ATAAATGAAGGAAGCTACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAAATTGCATGGGACAGAG
ACTTTGCAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAAAAGACTTGTTTATGTATTAAAAAAACCACTTCACAGTGAGTCGC
TTTGGCTTTTTGATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTTGAATTCCTATTTATTTTTTGTGTTTGTCCCTGATTTTT
TTTTTTTAATTCTATGGCTTCCTATCTGGCAGCTTAATGGGTAATTTTTGAGGTATGTATTTAACAAAATAAACGACACTGCCGAAAAAA
AAAAAAGTGAAGTGAAAACAATCAGGGCACATTAAAATGATACAAGTCAAATAAATCTTAAAGACACAATGCACACTTAAAATGACTCAA
TAAAATGACTTGCTACGTTCCGTTATTCAATTTGTCATTACTGTAGTGAACAGATGCATTTCTGTGGAATTCCAAATAAGTAAAACTGAA
ATTCAGTGCAGAGAAAACTTTGTCCACTAGTGCAAGTCTTGATCAAATGACATTTTGACATTGGACATATGGAATTCATAGTATGAGCCA
CATTTTGTTGTGAAATTTATTTACCTGCTTGTGGCTTCAAATCTGAAAATTAATAAGCCTGCTCGTTTAAAAGTTGTTTGTTGTTGCTGT
TTTTTTGTCTTTTTGTTTTTTACTAGAAAATAGTTCAGTGTAATATTAAGTTAGAAAAGAAGTTGCTGCCCAGTTAAAGGGGCTCCCTCT
CAAATAAATCTCCATCCTTCCCTCTCCCAAAAGACATTTCTGATTTCTGCTTCACTTTGGGCTTCCTCTTCTTCGTACACATTCCATCTA
CCTAATCAAACATTTTCAGTCCCTGATCTCTCCTGTCCCTTTTCCTGGGATGACAGCCCTAACAAGAACTGTTTTTGAATCGTTGTGCAG
CTCCAGGCAATAGAGTATGTGAAGCGATTTCAGTAGAATCACTTACTCATCCTAAAAGAAAACATTATCCCAGTTACCTACATCGCAATT
ACCTTATGTAAAGCAGAACTAATGCTGACTGGATGTTTAATGGGATGAGCATTAAAGCTGCAATCTACTATAGTACTCCAGATCTCTTTC
GGCTTCCTATGAGAAACACCAGAAGCATTACTTTCCACTTCTACTTACAGTAATTGCAAGAGGAGACCTCACATTCAGGACTGGCCTAGT
GAACGTAATCCATGCTTTAAACTGGCCATTAAACAGTCCCACATGGTTGGATTTTTTTTTTTTTTTTGAGTTGTGCTTTCACAAAACCTT
GTCAAAGACCTCATGCAATATCACTTTGAAAGTTATTTTCTGTTTACTACACAAACATTGTAATATAACTGTTAATACTATTTATATATT
TGAAAGGTATAAAAGGTAGGAGTTAAAAAAAAAACCTCTATGTGTAGATATTAACTCAGAACTTACAATATACAGGGAGAAGACATGTTG
CAATACAAGCTAATTCTAGCTGCTCAGTAACCTCTGGAGTTTTTAAAGGGACATTTTCCTGTACTTTTTCAAATAATGATGTTTAAAAAT
TATCTTGACATAAGCGTCATATACCTTTGCAAAAGGATGGTTGTTTGCAGTTAGCCCTGGCCCCATCCTTCCTATTTCTGTAGTATGCTG
CAGCTTTAATCAGAAAGTCCATGGTTGCTGCTTCCTGATCTCCGAGTTACTCTTTCCAAATTGTCTTCTTACACTGTTGCTGAAGGTCAC
TCTGTACACGTAATGGAAACTGATTTTGCCAAGCTCTTACAAGGTGGTTCATCTATCGATGGCATCCGCATTTGGTATCTTTTACACTTC
AACCAAAAATTTATTAGGTATTTTTCAATGCTAAGTCTTGCCTTTTATTTTTTAATTTCACTGCCAAGTTTGCAGTGGTTCTAAGTGAAT
CTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCGAATTACAATGCATATATGTCTATTTATTCAATATCTGTCATATAATATCT
ATTTGGAAGAAGAAACTTTCTCTTGTAGTGCCTCTTGACAAAGCACAATTTCCCGCCTTTTTTTTTTTTTGTGAAATGAAAAAAACAAAT
TGTGTTTTATTGCGGTATCAACAATGTGAATAAGGATTAACATATTGTAAATGTTCTTTTTTCCATGTAAATCAACTATCTTTGTTATCA

>In-frame_ENST00000335508_ENST00000443023_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000260926_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(transcript)=3950nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC
TGAATAAGTTCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGCGTTACACTTTATCCCGTCTCTATGACTGGATCATAG
TCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTAACGGAAGTTACATCAGGCAAGTACCAGGATGAAAAGAACTATGAA
ATAAATGAAGGAAGCTACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAAATTGCATGGGACAGAG
ACTTTGCAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAAAAGACTTGTTTATGTATTAAAAAAACCACTTCACAGTGAGTCGC
TTTGGCTTTTTGATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTTGAATTCCTATTTATTTTTTGTGTTTGTCCCTGATTTTT
TTTTTTTAATTCTATGGCTTCCTATCTGGCAGCTTAATGGGTAATTTTTGAGGTATGTATTTAACAAAATAAACGACACTGCCGAAAAAA
AAAAAAGTGAAGTGAAAACAATCAGGGCACATTAAAATGATACAAGTCAAATAAATCTTAAAGACACAATGCACACTTAAAATGACTCAA
TAAAATGACTTGCTACGTTCCGTTATTCAATTTGTCATTACTGTAGTGAACAGATGCATTTCTGTGGAATTCCAAATAAGTAAAACTGAA
ATTCAGTGCAGAGAAAACTTTGTCCACTAGTGCAAGTCTTGATCAAATGACATTTTGACATTGGACATATGGAATTCATAGTATGAGCCA
CATTTTGTTGTGAAATTTATTTACCTGCTTGTGGCTTCAAATCTGAAAATTAATAAGCCTGCTCGTTTAAAAGTTGTTTGTTGTTGCTGT
TTTTTTGTCTTTTTGTTTTTTACTAGAAAATAGTTCAGTGTAATATTAAGTTAGAAAAGAAGTTGCTGCCCAGTTAAAGGGGCTCCCTCT
CAAATAAATCTCCATCCTTCCCTCTCCCAAAAGACATTTCTGATTTCTGCTTCACTTTGGGCTTCCTCTTCTTCGTACACATTCCATCTA
CCTAATCAAACATTTTCAGTCCCTGATCTCTCCTGTCCCTTTTCCTGGGATGACAGCCCTAACAAGAACTGTTTTTGAATCGTTGTGCAG
CTCCAGGCAATAGAGTATGTGAAGCGATTTCAGTAGAATCACTTACTCATCCTAAAAGAAAACATTATCCCAGTTACCTACATCGCAATT
ACCTTATGTAAAGCAGAACTAATGCTGACTGGATGTTTAATGGGATGAGCATTAAAGCTGCAATCTACTATAGTACTCCAGATCTCTTTC
GGCTTCCTATGAGAAACACCAGAAGCATTACTTTCCACTTCTACTTACAGTAATTGCAAGAGGAGACCTCACATTCAGGACTGGCCTAGT
GAACGTAATCCATGCTTTAAACTGGCCATTAAACAGTCCCACATGGTTGGATTTTTTTTTTTTTTTTGAGTTGTGCTTTCACAAAACCTT
GTCAAAGACCTCATGCAATATCACTTTGAAAGTTATTTTCTGTTTACTACACAAACATTGTAATATAACTGTTAATACTATTTATATATT
TGAAAGGTATAAAAGGTAGGAGTTAAAAAAAAAACCTCTATGTGTAGATATTAACTCAGAACTTACAATATACAGGGAGAAGACATGTTG
CAATACAAGCTAATTCTAGCTGCTCAGTAACCTCTGGAGTTTTTAAAGGGACATTTTCCTGTACTTTTTCAAATAATGATGTTTAAAAAT
TATCTTGACATAAGCGTCATATACCTTTGCAAAAGGATGGTTGTTTGCAGTTAGCCCTGGCCCCATCCTTCCTATTTCTGTAGTATGCTG
CAGCTTTAATCAGAAAGTCCATGGTTGCTGCTTCCTGATCTCCGAGTTACTCTTTCCAAATTGTCTTCTTACACTGTTGCTGAAGGTCAC
TCTGTACACGTAATGGAAACTGATTTTGCCAAGCTCTTACAAGGTGGTTCATCTATCGATGGCATCCGCATTTGGTATCTTTTACACTTC
AACCAAAAATTTATTAGGTATTTTTCAATGCTAAGTCTTGCCTTTTATTTTTTAATTTCACTGCCAAGTTTGCAGTGGTTCTAAGTGAAT
CTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCGAATTACAATGCATATATGTCTATTTATTCAATATCTGTCATATAATATCT
ATTTGGAAGAAGAAACTTTCTCTTGTAGTGCCTCTTGACAAAGCACAATTTCCCGCCTTTTTTTTTTTTTGTGAAATGAAAAAAACAAAT
TGTGTTTTATTGCGGTATCAACAATGTGAATAAGGATTAACATATTGTAAATGTTCTTTTTTCCATGTAAATCAACTATCTTTGTTATCA

>In-frame_ENST00000335508_ENST00000260926_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000428695_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(transcript)=1483nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC

>In-frame_ENST00000335508_ENST00000428695_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000457245_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(transcript)=1308nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC

>In-frame_ENST00000335508_ENST00000457245_TCGA-VQ-A92D-01A_SF3B1_chr2_198283233_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000417098_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(transcript)=3958nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC
TGAATAAGTTCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGCGTTACACTTTATCCCGTCTCTATGACTGGATCATAG
TCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTAACGGAAGTTACATCAGGCAAGTACCAGGATGAAAAGAACTATGAA
ATAAATGAAGGAAGCTACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAAATTGCATGGGACAGAG
ACTTTGCAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAAAAGACTTGTTTATGTATTAAAAAAACCACTTCACAGTGAGTCGC
TTTGGCTTTTTGATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTTGAATTCCTATTTATTTTTTGTGTTTGTCCCTGATTTTT
TTTTTTTAATTCTATGGCTTCCTATCTGGCAGCTTAATGGGTAATTTTTGAGGTATGTATTTAACAAAATAAACGACACTGCCGAAAAAA
AAAAAAGTGAAGTGAAAACAATCAGGGCACATTAAAATGATACAAGTCAAATAAATCTTAAAGACACAATGCACACTTAAAATGACTCAA
TAAAATGACTTGCTACGTTCCGTTATTCAATTTGTCATTACTGTAGTGAACAGATGCATTTCTGTGGAATTCCAAATAAGTAAAACTGAA
ATTCAGTGCAGAGAAAACTTTGTCCACTAGTGCAAGTCTTGATCAAATGACATTTTGACATTGGACATATGGAATTCATAGTATGAGCCA
CATTTTGTTGTGAAATTTATTTACCTGCTTGTGGCTTCAAATCTGAAAATTAATAAGCCTGCTCGTTTAAAAGTTGTTTGTTGTTGCTGT
TTTTTTGTCTTTTTGTTTTTTACTAGAAAATAGTTCAGTGTAATATTAAGTTAGAAAAGAAGTTGCTGCCCAGTTAAAGGGGCTCCCTCT
CAAATAAATCTCCATCCTTCCCTCTCCCAAAAGACATTTCTGATTTCTGCTTCACTTTGGGCTTCCTCTTCTTCGTACACATTCCATCTA
CCTAATCAAACATTTTCAGTCCCTGATCTCTCCTGTCCCTTTTCCTGGGATGACAGCCCTAACAAGAACTGTTTTTGAATCGTTGTGCAG
CTCCAGGCAATAGAGTATGTGAAGCGATTTCAGTAGAATCACTTACTCATCCTAAAAGAAAACATTATCCCAGTTACCTACATCGCAATT
ACCTTATGTAAAGCAGAACTAATGCTGACTGGATGTTTAATGGGATGAGCATTAAAGCTGCAATCTACTATAGTACTCCAGATCTCTTTC
GGCTTCCTATGAGAAACACCAGAAGCATTACTTTCCACTTCTACTTACAGTAATTGCAAGAGGAGACCTCACATTCAGGACTGGCCTAGT
GAACGTAATCCATGCTTTAAACTGGCCATTAAACAGTCCCACATGGTTGGATTTTTTTTTTTTTTTTGAGTTGTGCTTTCACAAAACCTT
GTCAAAGACCTCATGCAATATCACTTTGAAAGTTATTTTCTGTTTACTACACAAACATTGTAATATAACTGTTAATACTATTTATATATT
TGAAAGGTATAAAAGGTAGGAGTTAAAAAAAAAACCTCTATGTGTAGATATTAACTCAGAACTTACAATATACAGGGAGAAGACATGTTG
CAATACAAGCTAATTCTAGCTGCTCAGTAACCTCTGGAGTTTTTAAAGGGACATTTTCCTGTACTTTTTCAAATAATGATGTTTAAAAAT
TATCTTGACATAAGCGTCATATACCTTTGCAAAAGGATGGTTGTTTGCAGTTAGCCCTGGCCCCATCCTTCCTATTTCTGTAGTATGCTG
CAGCTTTAATCAGAAAGTCCATGGTTGCTGCTTCCTGATCTCCGAGTTACTCTTTCCAAATTGTCTTCTTACACTGTTGCTGAAGGTCAC
TCTGTACACGTAATGGAAACTGATTTTGCCAAGCTCTTACAAGGTGGTTCATCTATCGATGGCATCCGCATTTGGTATCTTTTACACTTC
AACCAAAAATTTATTAGGTATTTTTCAATGCTAAGTCTTGCCTTTTATTTTTTAATTTCACTGCCAAGTTTGCAGTGGTTCTAAGTGAAT
CTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCGAATTACAATGCATATATGTCTATTTATTCAATATCTGTCATATAATATCT
ATTTGGAAGAAGAAACTTTCTCTTGTAGTGCCTCTTGACAAAGCACAATTTCCCGCCTTTTTTTTTTTTTGTGAAATGAAAAAAACAAAT
TGTGTTTTATTGCGGTATCAACAATGTGAATAAGGATTAACATATTGTAAATGTTCTTTTTTCCATGTAAATCAACTATCTTTGTTATCA

>In-frame_ENST00000335508_ENST00000417098_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000443023_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(transcript)=3950nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC
TGAATAAGTTCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGCGTTACACTTTATCCCGTCTCTATGACTGGATCATAG
TCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTAACGGAAGTTACATCAGGCAAGTACCAGGATGAAAAGAACTATGAA
ATAAATGAAGGAAGCTACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAAATTGCATGGGACAGAG
ACTTTGCAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAAAAGACTTGTTTATGTATTAAAAAAACCACTTCACAGTGAGTCGC
TTTGGCTTTTTGATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTTGAATTCCTATTTATTTTTTGTGTTTGTCCCTGATTTTT
TTTTTTTAATTCTATGGCTTCCTATCTGGCAGCTTAATGGGTAATTTTTGAGGTATGTATTTAACAAAATAAACGACACTGCCGAAAAAA
AAAAAAGTGAAGTGAAAACAATCAGGGCACATTAAAATGATACAAGTCAAATAAATCTTAAAGACACAATGCACACTTAAAATGACTCAA
TAAAATGACTTGCTACGTTCCGTTATTCAATTTGTCATTACTGTAGTGAACAGATGCATTTCTGTGGAATTCCAAATAAGTAAAACTGAA
ATTCAGTGCAGAGAAAACTTTGTCCACTAGTGCAAGTCTTGATCAAATGACATTTTGACATTGGACATATGGAATTCATAGTATGAGCCA
CATTTTGTTGTGAAATTTATTTACCTGCTTGTGGCTTCAAATCTGAAAATTAATAAGCCTGCTCGTTTAAAAGTTGTTTGTTGTTGCTGT
TTTTTTGTCTTTTTGTTTTTTACTAGAAAATAGTTCAGTGTAATATTAAGTTAGAAAAGAAGTTGCTGCCCAGTTAAAGGGGCTCCCTCT
CAAATAAATCTCCATCCTTCCCTCTCCCAAAAGACATTTCTGATTTCTGCTTCACTTTGGGCTTCCTCTTCTTCGTACACATTCCATCTA
CCTAATCAAACATTTTCAGTCCCTGATCTCTCCTGTCCCTTTTCCTGGGATGACAGCCCTAACAAGAACTGTTTTTGAATCGTTGTGCAG
CTCCAGGCAATAGAGTATGTGAAGCGATTTCAGTAGAATCACTTACTCATCCTAAAAGAAAACATTATCCCAGTTACCTACATCGCAATT
ACCTTATGTAAAGCAGAACTAATGCTGACTGGATGTTTAATGGGATGAGCATTAAAGCTGCAATCTACTATAGTACTCCAGATCTCTTTC
GGCTTCCTATGAGAAACACCAGAAGCATTACTTTCCACTTCTACTTACAGTAATTGCAAGAGGAGACCTCACATTCAGGACTGGCCTAGT
GAACGTAATCCATGCTTTAAACTGGCCATTAAACAGTCCCACATGGTTGGATTTTTTTTTTTTTTTTGAGTTGTGCTTTCACAAAACCTT
GTCAAAGACCTCATGCAATATCACTTTGAAAGTTATTTTCTGTTTACTACACAAACATTGTAATATAACTGTTAATACTATTTATATATT
TGAAAGGTATAAAAGGTAGGAGTTAAAAAAAAAACCTCTATGTGTAGATATTAACTCAGAACTTACAATATACAGGGAGAAGACATGTTG
CAATACAAGCTAATTCTAGCTGCTCAGTAACCTCTGGAGTTTTTAAAGGGACATTTTCCTGTACTTTTTCAAATAATGATGTTTAAAAAT
TATCTTGACATAAGCGTCATATACCTTTGCAAAAGGATGGTTGTTTGCAGTTAGCCCTGGCCCCATCCTTCCTATTTCTGTAGTATGCTG
CAGCTTTAATCAGAAAGTCCATGGTTGCTGCTTCCTGATCTCCGAGTTACTCTTTCCAAATTGTCTTCTTACACTGTTGCTGAAGGTCAC
TCTGTACACGTAATGGAAACTGATTTTGCCAAGCTCTTACAAGGTGGTTCATCTATCGATGGCATCCGCATTTGGTATCTTTTACACTTC
AACCAAAAATTTATTAGGTATTTTTCAATGCTAAGTCTTGCCTTTTATTTTTTAATTTCACTGCCAAGTTTGCAGTGGTTCTAAGTGAAT
CTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCGAATTACAATGCATATATGTCTATTTATTCAATATCTGTCATATAATATCT
ATTTGGAAGAAGAAACTTTCTCTTGTAGTGCCTCTTGACAAAGCACAATTTCCCGCCTTTTTTTTTTTTTGTGAAATGAAAAAAACAAAT
TGTGTTTTATTGCGGTATCAACAATGTGAATAAGGATTAACATATTGTAAATGTTCTTTTTTCCATGTAAATCAACTATCTTTGTTATCA

>In-frame_ENST00000335508_ENST00000443023_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000260926_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(transcript)=3950nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC
TGAATAAGTTCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGCGTTACACTTTATCCCGTCTCTATGACTGGATCATAG
TCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTAACGGAAGTTACATCAGGCAAGTACCAGGATGAAAAGAACTATGAA
ATAAATGAAGGAAGCTACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAAATTGCATGGGACAGAG
ACTTTGCAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAAAAGACTTGTTTATGTATTAAAAAAACCACTTCACAGTGAGTCGC
TTTGGCTTTTTGATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTTGAATTCCTATTTATTTTTTGTGTTTGTCCCTGATTTTT
TTTTTTTAATTCTATGGCTTCCTATCTGGCAGCTTAATGGGTAATTTTTGAGGTATGTATTTAACAAAATAAACGACACTGCCGAAAAAA
AAAAAAGTGAAGTGAAAACAATCAGGGCACATTAAAATGATACAAGTCAAATAAATCTTAAAGACACAATGCACACTTAAAATGACTCAA
TAAAATGACTTGCTACGTTCCGTTATTCAATTTGTCATTACTGTAGTGAACAGATGCATTTCTGTGGAATTCCAAATAAGTAAAACTGAA
ATTCAGTGCAGAGAAAACTTTGTCCACTAGTGCAAGTCTTGATCAAATGACATTTTGACATTGGACATATGGAATTCATAGTATGAGCCA
CATTTTGTTGTGAAATTTATTTACCTGCTTGTGGCTTCAAATCTGAAAATTAATAAGCCTGCTCGTTTAAAAGTTGTTTGTTGTTGCTGT
TTTTTTGTCTTTTTGTTTTTTACTAGAAAATAGTTCAGTGTAATATTAAGTTAGAAAAGAAGTTGCTGCCCAGTTAAAGGGGCTCCCTCT
CAAATAAATCTCCATCCTTCCCTCTCCCAAAAGACATTTCTGATTTCTGCTTCACTTTGGGCTTCCTCTTCTTCGTACACATTCCATCTA
CCTAATCAAACATTTTCAGTCCCTGATCTCTCCTGTCCCTTTTCCTGGGATGACAGCCCTAACAAGAACTGTTTTTGAATCGTTGTGCAG
CTCCAGGCAATAGAGTATGTGAAGCGATTTCAGTAGAATCACTTACTCATCCTAAAAGAAAACATTATCCCAGTTACCTACATCGCAATT
ACCTTATGTAAAGCAGAACTAATGCTGACTGGATGTTTAATGGGATGAGCATTAAAGCTGCAATCTACTATAGTACTCCAGATCTCTTTC
GGCTTCCTATGAGAAACACCAGAAGCATTACTTTCCACTTCTACTTACAGTAATTGCAAGAGGAGACCTCACATTCAGGACTGGCCTAGT
GAACGTAATCCATGCTTTAAACTGGCCATTAAACAGTCCCACATGGTTGGATTTTTTTTTTTTTTTTGAGTTGTGCTTTCACAAAACCTT
GTCAAAGACCTCATGCAATATCACTTTGAAAGTTATTTTCTGTTTACTACACAAACATTGTAATATAACTGTTAATACTATTTATATATT
TGAAAGGTATAAAAGGTAGGAGTTAAAAAAAAAACCTCTATGTGTAGATATTAACTCAGAACTTACAATATACAGGGAGAAGACATGTTG
CAATACAAGCTAATTCTAGCTGCTCAGTAACCTCTGGAGTTTTTAAAGGGACATTTTCCTGTACTTTTTCAAATAATGATGTTTAAAAAT
TATCTTGACATAAGCGTCATATACCTTTGCAAAAGGATGGTTGTTTGCAGTTAGCCCTGGCCCCATCCTTCCTATTTCTGTAGTATGCTG
CAGCTTTAATCAGAAAGTCCATGGTTGCTGCTTCCTGATCTCCGAGTTACTCTTTCCAAATTGTCTTCTTACACTGTTGCTGAAGGTCAC
TCTGTACACGTAATGGAAACTGATTTTGCCAAGCTCTTACAAGGTGGTTCATCTATCGATGGCATCCGCATTTGGTATCTTTTACACTTC
AACCAAAAATTTATTAGGTATTTTTCAATGCTAAGTCTTGCCTTTTATTTTTTAATTTCACTGCCAAGTTTGCAGTGGTTCTAAGTGAAT
CTGTGGGCATTTTAGCCTGTGGTCTTGCCAGATCTTTGCGAATTACAATGCATATATGTCTATTTATTCAATATCTGTCATATAATATCT
ATTTGGAAGAAGAAACTTTCTCTTGTAGTGCCTCTTGACAAAGCACAATTTCCCGCCTTTTTTTTTTTTTGTGAAATGAAAAAAACAAAT
TGTGTTTTATTGCGGTATCAACAATGTGAATAAGGATTAACATATTGTAAATGTTCTTTTTTCCATGTAAATCAACTATCTTTGTTATCA

>In-frame_ENST00000335508_ENST00000260926_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

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>In-frame_ENST00000335508_ENST00000428695_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(transcript)=1483nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC
TAGGCAAAGCAATACATCGGTCCAAGGATTTTCTGCTTTCATTTCTTTAAAAGTTTTTTGTTAGTTTGTTTTTTGTTTTTGTTTTTGGGT
TTTTTTGGCTTTATTTTTGTCTTTTTATGTCTGTTTTGTTTTTCTTACCCTTTTGGACATTTCTTTGTTGCACAGGATACACCTATAGAC

>In-frame_ENST00000335508_ENST00000428695_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------
>In-frame_ENST00000335508_ENST00000457245_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(transcript)=1308nt_BP=587nt
AGTGCAGCCCCCAGCTATTTTTCTCCGTGGCGGCGGCGACGAGCGGAAGTTCTTGGGAGCGCCAGTTCCGTCTGTGTGTTCGAGTGGACA
AAATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGAAGCTCAAG
GAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAGTGACAGCAGATTTGCTGGATACGTGACATCAATTGCTG
CAACTGAACTTGAAGATGATGACGATGACTATTCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCAT
TGCTTAATGATATACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGATGAATACA
AAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGGAAAACCCCTGATCCTAAAATGAATGCTA
GGACTTACATGGATGTAATGCGAGAACAACACTTGACTAAAGAAGAAGGCTGGCTGTGTGAACTGCTCCGCTGGAAGGAGAACCCAAGCC
CAGAAAACCGCACCCTCTGGGAAAACCTCTGTACCATCCGTCGCTTCCTGAACCTTCCCCAGCATGAGAGGGATGTCATCTATGAGGAGG
AGTCAAGGCATCACCACAGCGAACGCATGCAACACGTGGTCCAGCTTCCCCCTGAGCCGGTGCAGGTACTTCATAGACAGCAGTCTCAGC
CAGCCAAGGAGAGTTCCCCTCCCAGAGAAGAAGCGCCTCCCCCACCTCCTCCGACTGAAGACAGTTGTGCCAAAAAGCCCCGGTCTCGCA
CAAAGATCTCCTTAGAAGCCCTGGGGATCCTCCAAAGCTTTATTCATGATGTAGGCCTGTACCCAGACCAGGAAGCCATCCACACTCTTT
CGGCTCAGCTGGATCTCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGCGGTACCACGTGAAGCACCACGGGAAGCTGAAAGAGC
ACCTGGGCTCCGCGGTGGACGTGGCTGAATATAAGGACGAGGAGCTGCTGACCGAGTCAGAGGAGAACGACAGCGAGGAAGGCTCCGAGG
AGATGTACAAAGTGGAGGCTGAGGAGGAAAATGCTGACAAAAGCAAGGCAGCACCTGCCGAAATTGACCAGAGATAATGTGAACTTCTAC

>In-frame_ENST00000335508_ENST00000457245_TCGA-VQ-A92D_SF3B1_chr2_198283232_-_SATB2_chr2_200173680_length(amino acids)=391AA_start in transcript=71_stop in transcript=1246
MCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPG
YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEGWLCELLR
WKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEESRHHHSERMQHVVQLPPEPVQVLHRQQSQPAKESSPPREEAPPPPPPTEDSCA
KKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEEND

--------------------------------------------------------------

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Fusion Gene PPI Analysis for SF3B1-SATB2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-671156_1157183.6666666666666688.0PHF5A
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67547_550183.6666666666666688.0PHF5A
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-671156_1157183.6666666666666688.0PHF5A
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67547_550183.6666666666666688.0PHF5A
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67223_491183.6666666666666688.0PPP1R8
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67223_491183.6666666666666688.0PPP1R8
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-67529_568183.6666666666666688.0SF3B14
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-67529_568183.6666666666666688.0SF3B14
HgeneSF3B1chr2:198283232chr2:200173680ENST00000409915-671248_1304183.6666666666666688.0SF3B3 and SF3B5
HgeneSF3B1chr2:198283233chr2:200173680ENST00000409915-671248_1304183.6666666666666688.0SF3B3 and SF3B5


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-5251156_1157165.01305.0PHF5A
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525547_550165.01305.0PHF5A
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-151156_11570145.0PHF5A
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15547_5500145.0PHF5A
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-5251156_1157165.01305.0PHF5A
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525547_550165.01305.0PHF5A
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-151156_11570145.0PHF5A
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15547_5500145.0PHF5A
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525223_491165.01305.0PPP1R8
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15223_4910145.0PPP1R8
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525223_491165.01305.0PPP1R8
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15223_4910145.0PPP1R8
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-525529_568165.01305.0SF3B14
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-15529_5680145.0SF3B14
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-525529_568165.01305.0SF3B14
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-15529_5680145.0SF3B14
HgeneSF3B1chr2:198283232chr2:200173680ENST00000335508-5251248_1304165.01305.0SF3B3 and SF3B5
HgeneSF3B1chr2:198283232chr2:200173680ENST00000414963-151248_13040145.0SF3B3 and SF3B5
HgeneSF3B1chr2:198283233chr2:200173680ENST00000335508-5251248_1304165.01305.0SF3B3 and SF3B5
HgeneSF3B1chr2:198283233chr2:200173680ENST00000414963-151248_13040145.0SF3B3 and SF3B5


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SF3B1-SATB2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SF3B1-SATB2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSF3B1C0220633Uveal melanoma4CTD_human;ORPHANET
HgeneSF3B1C0346373Malignant melanoma of iris2ORPHANET
HgeneSF3B1C0346388Malignant melanoma of choroid2ORPHANET
HgeneSF3B1C0023434Chronic Lymphocytic Leukemia1CTD_human
HgeneSF3B1C0033578Prostatic Neoplasms1CTD_human
HgeneSF3B1C0345967Malignant mesothelioma1CTD_human
HgeneSF3B1C0376358Malignant neoplasm of prostate1CTD_human
HgeneSF3B1C1264195Refractory anemia with ringed sideroblasts1ORPHANET
TgeneSATB2C0008925Cleft Palate3CTD_human;GENOMICS_ENGLAND
TgeneSATB2C1837218Cleft palate, isolated3CTD_human;GENOMICS_ENGLAND
TgeneSATB2C47062582q33.1 microdeletion syndrome2ORPHANET
TgeneSATB2C0007621Neoplastic Cell Transformation1CTD_human
TgeneSATB2C0009402Colorectal Carcinoma1CTD_human
TgeneSATB2C0009404Colorectal Neoplasms1CTD_human
TgeneSATB2C0149925Small cell carcinoma of lung1CTD_human
TgeneSATB2C0376634Craniofacial Abnormalities1CTD_human
TgeneSATB2C2676739Chromosome 2q32-Q33 Deletion Syndrome1CTD_human;GENOMICS_ENGLAND;ORPHANET