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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SIL1-SLC23A1 (FusionGDB2 ID:81319) |
Fusion Gene Summary for SIL1-SLC23A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SIL1-SLC23A1 | Fusion gene ID: 81319 | Hgene | Tgene | Gene symbol | SIL1 | SLC23A1 | Gene ID | 64374 | 9963 |
Gene name | SIL1 nucleotide exchange factor | solute carrier family 23 member 1 | |
Synonyms | BAP|MSS|ULG5 | SLC23A2|SVCT1|YSPL3 | |
Cytomap | 5q31.2 | 5q31.2 | |
Type of gene | protein-coding | protein-coding | |
Description | nucleotide exchange factor SIL1BiP-associated proteinSIL1 homolog, endoplasmic reticulum chaperoneSIL1-like protein endoplasmic reticulum chaperone | solute carrier family 23 member 1Na(+)/L-ascorbic acid transporter 1hSVCT1sodium-dependent vitamin C transporter-1solute carrier family 23 (ascorbic acid transporter), member 1solute carrier family 23 (nucleobase transporters), member 1solute carrie | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000394817, ENST00000265195, ENST00000509534, ENST00000515008, | ENST00000353963, ENST00000348729, ENST00000503919, | |
Fusion gene scores | * DoF score | 14 X 11 X 10=1540 | 4 X 4 X 3=48 |
# samples | 17 | 4 | |
** MAII score | log2(17/1540*10)=-3.17932369944456 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SIL1 [Title/Abstract] AND SLC23A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SIL1(138456724)-SLC23A1(138716575), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | SIL1-SLC23A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. SIL1-SLC23A1 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. SIL1-SLC23A1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. SIL1-SLC23A1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | SLC23A1 | GO:0006814 | sodium ion transport | 18094143 |
Tgene | SLC23A1 | GO:0009636 | response to toxic substance | 17575980 |
Tgene | SLC23A1 | GO:0015882 | L-ascorbic acid transmembrane transport | 10631088|11895172|18247577|18417304|19216494 |
Tgene | SLC23A1 | GO:0070904 | transepithelial L-ascorbic acid transport | 18417304 |
Fusion gene breakpoints across SIL1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across SLC23A1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | UCEC | TCGA-2E-A9G8-01A | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
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Fusion Gene ORF analysis for SIL1-SLC23A1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000394817 | ENST00000353963 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
In-frame | ENST00000394817 | ENST00000348729 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
5CDS-5UTR | ENST00000394817 | ENST00000503919 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
Frame-shift | ENST00000265195 | ENST00000353963 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
Frame-shift | ENST00000265195 | ENST00000348729 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
5CDS-5UTR | ENST00000265195 | ENST00000503919 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
Frame-shift | ENST00000509534 | ENST00000353963 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
Frame-shift | ENST00000509534 | ENST00000348729 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
5CDS-5UTR | ENST00000509534 | ENST00000503919 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
intron-3CDS | ENST00000515008 | ENST00000353963 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
intron-3CDS | ENST00000515008 | ENST00000348729 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
intron-5UTR | ENST00000515008 | ENST00000503919 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000394817 | SIL1 | chr5 | 138456724 | - | ENST00000353963 | SLC23A1 | chr5 | 138716575 | - | 2340 | 384 | 385 | 1884 | 499 |
ENST00000394817 | SIL1 | chr5 | 138456724 | - | ENST00000348729 | SLC23A1 | chr5 | 138716575 | - | 2328 | 384 | 385 | 1872 | 495 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000394817 | ENST00000353963 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - | 0.005216655 | 0.99478334 |
ENST00000394817 | ENST00000348729 | SIL1 | chr5 | 138456724 | - | SLC23A1 | chr5 | 138716575 | - | 0.005429373 | 0.99457055 |
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Fusion Genomic Features for SIL1-SLC23A1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SIL1-SLC23A1 |
Go to FGviewer for the breakpoints of chr5:138456724-chr5:138716575 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 230_243 | 102.66666666666667 | 767.6666666666666 | Intramembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 230_243 | 102.66666666666667 | 774.3333333333334 | Intramembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 103_103 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 125_159 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 181_207 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 226_229 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 244_250 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 272_312 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 334_358 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 380_402 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 424_426 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 448_457 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 479_490 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 512_598 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 103_103 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 125_159 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 181_207 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 226_229 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 244_250 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 272_312 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 334_358 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 380_402 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 424_426 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 448_457 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 479_490 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 512_598 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 104_124 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 160_180 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 208_225 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 251_271 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 313_333 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 359_379 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 403_423 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 427_447 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 458_478 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 491_511 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 104_124 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 160_180 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 208_225 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 251_271 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 313_333 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 359_379 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 403_423 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 427_447 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 458_478 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 491_511 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 1_52 | 102.66666666666667 | 767.6666666666666 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 74_81 | 102.66666666666667 | 767.6666666666666 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 1_52 | 102.66666666666667 | 774.3333333333334 | Topological domain | Cytoplasmic | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 74_81 | 102.66666666666667 | 774.3333333333334 | Topological domain | Extracellular | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 53_73 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000348729 | 2 | 15 | 82_102 | 102.66666666666667 | 767.6666666666666 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 53_73 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical | |
Tgene | SLC23A1 | chr5:138456724 | chr5:138716575 | ENST00000353963 | 2 | 15 | 82_102 | 102.66666666666667 | 774.3333333333334 | Transmembrane | Helical |
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Fusion Gene Sequence for SIL1-SLC23A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000394817_ENST00000353963_TCGA-2E-A9G8-01A_SIL1_chr5_138456724_-_SLC23A1_chr5_138716575_length(transcript)=2340nt_BP=384nt GCGGCGTGACAGCTGCCAGCTCACCGGCTCAGACGGTCGCCGCCGCGTTTGCGCAGGGGGAGCTGGTCGCCGCCGCGGCCGCCTGGAATT GTGGGAGTTGTGTCTGCCACTCGGCTGCCGGAGGCCGAAGGTCCCTGACTATGGCTCCCCAGAGCCTGCCTTCATCTAGGATGGCTCCTC TGGGCATGCTGCTTGGGCTGCTGATGGCCGCCTGCTTCACCTTCTGCCTCAGTCATCAGAACCTGAAGGAGTTTGCCCTGACCAACCCAG AGAAGAGCAGCACCAAAGAAACAGAGAGAAAAGAAACCAAAGCCGAGGAGGAGCTGGATGCCGAAGTCCTGGAGGTGTTCCACCCGACGC ATGAGTGGCAGGCCCTTCAGCCAGGCTGCCGCTGTTCCAGGCCAGTGCCTTTGCATTTCTGGTTCCAGCCAAAGCCATACTGGCTCTGGA GAGATGGAAATGCCCCCCGGAAGAGGAGATCTACGGTAACTGGAGTCTGCCCCTGAACACCTCTCATATTTGGCACCCACGGATACGGGA GGTGGGTTTGCATGTCCAGGGTGCAATCATGGTGTCCAGCGTGGTGGAGGTGGTGATTGGCCTGCTGGGGCTGCCTGGGGCCCTGCTCAA CTACATTGGGCCTCTCACAGTCACCCCCACTGTCTCCCTCATTGGCCTTTCTGTCTTCCAAGCTGCTGGCGACCGAGCTGGCTCCCACTG GGGCATCTCAGCTTGCTCCATTCTCCTGATCATCCTCTTCTCCCAGTACCTGCGCAACCTCACCTTCCTGCTGCCTGTCTACCGCTGGGG CAAGGGCCTCACTCTCCTCCGCATCCAGATCTTCAAAATGTTTCCTATCATGCTGGCCATCATGACCGTGTGGCTGCTCTGCTATGTCCT GACCTTGACAGACGTGCTGCCCACAGACCCAAAAGCCTATGGCTTCCAGGCACGAACCGATGCCCGTGGTGACATCATGGCTATTGCACC CTGGATCCGCATCCCCTACCCCTGTCAGTGGGGCCTGCCCACGGTGACTGCGGCTGCTGTCCTGGGAATGTTCAGCGCCACTCTGGCAGG CATCATTGAGTCCATCGGAGATTACTACGCCTGTGCCCGCCTGGCTGGTGCACCACCCCCTCCAGTACATGCTATCAACAGGGGCATCTT CACCGAAGGCATTTGCTGCATCATCGCGGGGCTATTGGGCACGGGCAACGGGTCCACCTCGTCCAGTCCCAACATTGGCGTCCTGGGAAT TACCAAGGTGGGCAGCCGGCGCGTGGTGCAGTATGGTGCGGCTATCATGCTGGTCCTGGGCACCATCGGCAAGTTCACGGCCCTCTTCTC CTCGCTCCCTGACCCCATCCTGGGGGGCATGTTCTGCACTCTCTTTGGCATGATTACAGCTGTGGGGCTGTCCAACCTGCAATTTGTGGA CATGAACTCCTCTCGCAACCTCTTCGTGCTGGGATTTTCCATGTTCTTCGGGCTCACGCTGCCCAATTACCTGGAGTCCAACCCTGGCGC CATCAATACAGGCATTCTTGAAGTGGATCAGATTCTGATTGTGCTGCTGACCACGGAGATGTTTGTGGGCGGGTGCCTTGCTTTCATACT TGACAACACAGTGCCAGGGAGCCCAGAGGAGCGTGGTCTGATACAGTGGAAAGCTGGGGCTCATGCCAACAGTGACATGTCTTCCAGCCT CAAGAGCTACGATTTCCCCATTGGGATGGGCATAGTAAAAAGAATTACCTTTCTGAAATACATTCCTATCTGCCCAGTCTTCAAAGGATT TTCTTCAAGTTCAAAAGATCAGATTGCAATTCCAGAAGACACTCCAGAAAATACAGAAACTGCATCTGTGTGCACCAAGGTCTGAAAAAT GACTTCCAGGAAAGGAAGCATGGTATATAACAGGAAAAGAAAACTACATGGGGAACCAGAAGACCTAAGCCTGAAATCCCAGCCCTGCCC CTAACTAACTTCTGTGTAAACTCAGATAAGTCACCTTTCTCTGGGATTCAAATTTTTGCATCAGTTAAAAAAAAAGGGGTGGGGGGGAAT GGGCCAAAGTCTGAGTCTTAGAGACTTGTACCAATGTTATGCTATGTCTCTAAATCTTTACTCTCCTAAGTAGACTTGTCAGCATCTAGG AAGAACAGCTAGAAATTTTCCTCTGTGATATTTTAGACTGCAAGTTGAAAAAAATAAAAAGAAATGAGGGCAGGTTCCAGGGCCTGAAAT GTAGGTATGCTGCAAGGCTTTTACATTGAATTTGACCCTACATCACTTCAAGACTAATGCATAATATTAAACATCATGTTGAAGAAATAA >In-frame_ENST00000394817_ENST00000353963_TCGA-2E-A9G8-01A_SIL1_chr5_138456724_-_SLC23A1_chr5_138716575_length(amino acids)=499AA_start in transcript=385_stop in transcript=1884 MPLFQASAFAFLVPAKAILALERWKCPPEEEIYGNWSLPLNTSHIWHPRIREVGLHVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVT PTVSLIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLLPVYRWGKGLTLLRIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPT DPKAYGFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCII AGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFSSLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLF VLGFSMFFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGAHANSDMSSSLKSYDFPIG -------------------------------------------------------------- >In-frame_ENST00000394817_ENST00000348729_TCGA-2E-A9G8-01A_SIL1_chr5_138456724_-_SLC23A1_chr5_138716575_length(transcript)=2328nt_BP=384nt GCGGCGTGACAGCTGCCAGCTCACCGGCTCAGACGGTCGCCGCCGCGTTTGCGCAGGGGGAGCTGGTCGCCGCCGCGGCCGCCTGGAATT GTGGGAGTTGTGTCTGCCACTCGGCTGCCGGAGGCCGAAGGTCCCTGACTATGGCTCCCCAGAGCCTGCCTTCATCTAGGATGGCTCCTC TGGGCATGCTGCTTGGGCTGCTGATGGCCGCCTGCTTCACCTTCTGCCTCAGTCATCAGAACCTGAAGGAGTTTGCCCTGACCAACCCAG AGAAGAGCAGCACCAAAGAAACAGAGAGAAAAGAAACCAAAGCCGAGGAGGAGCTGGATGCCGAAGTCCTGGAGGTGTTCCACCCGACGC ATGAGTGGCAGGCCCTTCAGCCAGGCTGCCGCTGTTCCAGGCCAGTGCCTTTGCATTTCTGGTTCCAGCCAAAGCCATACTGGCTCTGGA GAGATGGAAATGCCCCCCGGAAGAGGAGATCTACGGTAACTGGAGTCTGCCCCTGAACACCTCTCATATTTGGCACCCACGGATACGGGA GGTCCAGGGTGCAATCATGGTGTCCAGCGTGGTGGAGGTGGTGATTGGCCTGCTGGGGCTGCCTGGGGCCCTGCTCAACTACATTGGGCC TCTCACAGTCACCCCCACTGTCTCCCTCATTGGCCTTTCTGTCTTCCAAGCTGCTGGCGACCGAGCTGGCTCCCACTGGGGCATCTCAGC TTGCTCCATTCTCCTGATCATCCTCTTCTCCCAGTACCTGCGCAACCTCACCTTCCTGCTGCCTGTCTACCGCTGGGGCAAGGGCCTCAC TCTCCTCCGCATCCAGATCTTCAAAATGTTTCCTATCATGCTGGCCATCATGACCGTGTGGCTGCTCTGCTATGTCCTGACCTTGACAGA CGTGCTGCCCACAGACCCAAAAGCCTATGGCTTCCAGGCACGAACCGATGCCCGTGGTGACATCATGGCTATTGCACCCTGGATCCGCAT CCCCTACCCCTGTCAGTGGGGCCTGCCCACGGTGACTGCGGCTGCTGTCCTGGGAATGTTCAGCGCCACTCTGGCAGGCATCATTGAGTC CATCGGAGATTACTACGCCTGTGCCCGCCTGGCTGGTGCACCACCCCCTCCAGTACATGCTATCAACAGGGGCATCTTCACCGAAGGCAT TTGCTGCATCATCGCGGGGCTATTGGGCACGGGCAACGGGTCCACCTCGTCCAGTCCCAACATTGGCGTCCTGGGAATTACCAAGGTGGG CAGCCGGCGCGTGGTGCAGTATGGTGCGGCTATCATGCTGGTCCTGGGCACCATCGGCAAGTTCACGGCCCTCTTCTCCTCGCTCCCTGA CCCCATCCTGGGGGGCATGTTCTGCACTCTCTTTGGCATGATTACAGCTGTGGGGCTGTCCAACCTGCAATTTGTGGACATGAACTCCTC TCGCAACCTCTTCGTGCTGGGATTTTCCATGTTCTTCGGGCTCACGCTGCCCAATTACCTGGAGTCCAACCCTGGCGCCATCAATACAGG CATTCTTGAAGTGGATCAGATTCTGATTGTGCTGCTGACCACGGAGATGTTTGTGGGCGGGTGCCTTGCTTTCATACTTGACAACACAGT GCCAGGGAGCCCAGAGGAGCGTGGTCTGATACAGTGGAAAGCTGGGGCTCATGCCAACAGTGACATGTCTTCCAGCCTCAAGAGCTACGA TTTCCCCATTGGGATGGGCATAGTAAAAAGAATTACCTTTCTGAAATACATTCCTATCTGCCCAGTCTTCAAAGGATTTTCTTCAAGTTC AAAAGATCAGATTGCAATTCCAGAAGACACTCCAGAAAATACAGAAACTGCATCTGTGTGCACCAAGGTCTGAAAAATGACTTCCAGGAA AGGAAGCATGGTATATAACAGGAAAAGAAAACTACATGGGGAACCAGAAGACCTAAGCCTGAAATCCCAGCCCTGCCCCTAACTAACTTC TGTGTAAACTCAGATAAGTCACCTTTCTCTGGGATTCAAATTTTTGCATCAGTTAAAAAAAAAGGGGTGGGGGGGAATGGGCCAAAGTCT GAGTCTTAGAGACTTGTACCAATGTTATGCTATGTCTCTAAATCTTTACTCTCCTAAGTAGACTTGTCAGCATCTAGGAAGAACAGCTAG AAATTTTCCTCTGTGATATTTTAGACTGCAAGTTGAAAAAAATAAAAAGAAATGAGGGCAGGTTCCAGGGCCTGAAATGTAGGTATGCTG >In-frame_ENST00000394817_ENST00000348729_TCGA-2E-A9G8-01A_SIL1_chr5_138456724_-_SLC23A1_chr5_138716575_length(amino acids)=495AA_start in transcript=385_stop in transcript=1872 MPLFQASAFAFLVPAKAILALERWKCPPEEEIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTPTVS LIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLLPVYRWGKGLTLLRIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPTDPKA YGFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCIIAGLL GTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFSSLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGF SMFFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGAHANSDMSSSLKSYDFPIGMGIV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SIL1-SLC23A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | SIL1 | chr5:138456724 | chr5:138716575 | ENST00000265195 | - | 4 | 11 | 1_256 | 81.33333333333333 | 462.0 | HSPA5 and localization to the endoplasmic reticulum |
Hgene | SIL1 | chr5:138456724 | chr5:138716575 | ENST00000394817 | - | 3 | 10 | 1_256 | 81.33333333333333 | 462.0 | HSPA5 and localization to the endoplasmic reticulum |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SIL1-SLC23A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SIL1-SLC23A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SIL1 | C0024814 | Marinesco-Sjogren syndrome | 5 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
Hgene | SIL1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | SIL1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
Hgene | SIL1 | C3495676 | Anorectal Malformations | 1 | GENOMICS_ENGLAND |
Tgene | SLC23A1 | C0008370 | Cholestasis | 1 | CTD_human |
Tgene | SLC23A1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | SLC23A1 | C0035229 | Respiratory Insufficiency | 1 | CTD_human |
Tgene | SLC23A1 | C0151699 | Intracranial Hemorrhage | 1 | CTD_human |
Tgene | SLC23A1 | C0235063 | Respiratory Depression | 1 | CTD_human |
Tgene | SLC23A1 | C0553692 | Brain hemorrhage | 1 | CTD_human |
Tgene | SLC23A1 | C0751893 | Posterior Fossa Hemorrhage | 1 | CTD_human |
Tgene | SLC23A1 | C1145670 | Respiratory Failure | 1 | CTD_human |