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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SLC2A11-LLPH (FusionGDB2 ID:82236) |
Fusion Gene Summary for SLC2A11-LLPH |
Fusion gene summary |
Fusion gene information | Fusion gene name: SLC2A11-LLPH | Fusion gene ID: 82236 | Hgene | Tgene | Gene symbol | SLC2A11 | LLPH | Gene ID | 66035 | 84298 |
Gene name | solute carrier family 2 member 11 | LLP homolog, long-term synaptic facilitation factor | |
Synonyms | GLUT10|GLUT11 | C12orf31|hLLP | |
Cytomap | 22q11.23 | 12q14.3 | |
Type of gene | protein-coding | protein-coding | |
Description | solute carrier family 2, facilitated glucose transporter member 11facilitative glucose transporter GLUT11glucose transporter protein 10glucose transporter protein 11glucose transporter type 10glucose transporter type 11glucose transporter-like prote | protein LLP homologLLP homolog, long-term synaptic facilitation (Aplysia)human LAPS18-like protein | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q9BRT6 | |
Ensembl transtripts involved in fusion gene | ENST00000345044, ENST00000403208, ENST00000398356, ENST00000405847, ENST00000467660, ENST00000316185, | ENST00000266604, ENST00000446587, | |
Fusion gene scores | * DoF score | 6 X 5 X 3=90 | 2 X 2 X 2=8 |
# samples | 6 | 2 | |
** MAII score | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: SLC2A11 [Title/Abstract] AND LLPH [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SLC2A11(24217428)-LLPH(66517798), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SLC2A11 | GO:1904659 | glucose transmembrane transport | 12175779 |
Fusion gene breakpoints across SLC2A11 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across LLPH (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | HNSC | TCGA-DQ-5624-01A | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
ChimerDB4 | HNSC | TCGA-DQ-5624 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
ChimerDB4 | HNSC | TCGA-DQ-5624 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
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Fusion Gene ORF analysis for SLC2A11-LLPH |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000345044 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000345044 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
intron-3CDS | ENST00000403208 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
intron-3CDS | ENST00000403208 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000398356 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000398356 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000405847 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000405847 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
3UTR-3CDS | ENST00000467660 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
3UTR-3CDS | ENST00000467660 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000316185 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
In-frame | ENST00000316185 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000345044 | SLC2A11 | chr22 | 24217428 | + | ENST00000266604 | LLPH | chr12 | 66517798 | - | 1631 | 674 | 97 | 852 | 251 |
ENST00000345044 | SLC2A11 | chr22 | 24217428 | + | ENST00000446587 | LLPH | chr12 | 66517798 | - | 1386 | 674 | 97 | 852 | 251 |
ENST00000398356 | SLC2A11 | chr22 | 24217428 | + | ENST00000266604 | LLPH | chr12 | 66517798 | - | 1573 | 616 | 174 | 794 | 206 |
ENST00000398356 | SLC2A11 | chr22 | 24217428 | + | ENST00000446587 | LLPH | chr12 | 66517798 | - | 1328 | 616 | 174 | 794 | 206 |
ENST00000405847 | SLC2A11 | chr22 | 24217428 | + | ENST00000266604 | LLPH | chr12 | 66517798 | - | 1400 | 443 | 37 | 621 | 194 |
ENST00000405847 | SLC2A11 | chr22 | 24217428 | + | ENST00000446587 | LLPH | chr12 | 66517798 | - | 1155 | 443 | 821 | 216 | 201 |
ENST00000316185 | SLC2A11 | chr22 | 24217428 | + | ENST00000266604 | LLPH | chr12 | 66517798 | - | 1409 | 452 | 37 | 630 | 197 |
ENST00000316185 | SLC2A11 | chr22 | 24217428 | + | ENST00000446587 | LLPH | chr12 | 66517798 | - | 1164 | 452 | 830 | 225 | 201 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000345044 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.002704231 | 0.9972958 |
ENST00000345044 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.003004486 | 0.99699557 |
ENST00000398356 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.005522457 | 0.99447757 |
ENST00000398356 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.006247988 | 0.99375206 |
ENST00000405847 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.002970144 | 0.9970298 |
ENST00000405847 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.002763913 | 0.9972361 |
ENST00000316185 | ENST00000266604 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.003907909 | 0.996092 |
ENST00000316185 | ENST00000446587 | SLC2A11 | chr22 | 24217428 | + | LLPH | chr12 | 66517798 | - | 0.003626553 | 0.9963735 |
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Fusion Genomic Features for SLC2A11-LLPH |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SLC2A11-LLPH |
Go to FGviewer for the breakpoints of chr22:24217428-chr12:66517798 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | LLPH |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: In hippocampal neurons, regulates dendritic and spine growth and synaptic transmission. {ECO:0000250|UniProtKB:Q9D945}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 119_128 | 138.33333333333334 | 500.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 1_11 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 33_61 | 138.33333333333334 | 500.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 83_97 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 119_128 | 135.33333333333334 | 497.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 1_11 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 33_61 | 135.33333333333334 | 497.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 83_97 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 119_128 | 142.33333333333334 | 504.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 1_11 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 33_61 | 142.33333333333334 | 504.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 83_97 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 12_32 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 62_82 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 98_118 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 12_32 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 62_82 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 98_118 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 12_32 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 62_82 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 98_118 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D3 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 150_157 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 179_187 | 138.33333333333334 | 500.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 209_273 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 295_311 | 138.33333333333334 | 500.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 333_338 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 360_364 | 138.33333333333334 | 500.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 386_408 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 430_435 | 138.33333333333334 | 500.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 457_496 | 138.33333333333334 | 500.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 150_157 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 179_187 | 135.33333333333334 | 497.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 209_273 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 295_311 | 135.33333333333334 | 497.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 333_338 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 360_364 | 135.33333333333334 | 497.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 386_408 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 430_435 | 135.33333333333334 | 497.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 457_496 | 135.33333333333334 | 497.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 150_157 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 179_187 | 142.33333333333334 | 504.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 209_273 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 295_311 | 142.33333333333334 | 504.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 333_338 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 360_364 | 142.33333333333334 | 504.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 386_408 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 430_435 | 142.33333333333334 | 504.0 | Topological domain | Extracellular |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 457_496 | 142.33333333333334 | 504.0 | Topological domain | Cytoplasmic |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 129_149 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 158_178 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 188_208 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 274_294 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 312_332 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D8 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 339_359 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D9 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 365_385 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D10 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 409_429 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D11 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000316185 | + | 4 | 12 | 436_456 | 138.33333333333334 | 500.0 | Transmembrane | Helical%3B Name%3D12 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 129_149 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 158_178 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 188_208 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 274_294 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 312_332 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D8 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 339_359 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D9 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 365_385 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D10 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 409_429 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D11 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000345044 | + | 4 | 12 | 436_456 | 135.33333333333334 | 497.0 | Transmembrane | Helical%3B Name%3D12 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 129_149 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 158_178 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 188_208 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 274_294 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 312_332 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D8 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 339_359 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D9 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 365_385 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D10 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 409_429 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D11 |
Hgene | SLC2A11 | chr22:24217428 | chr12:66517798 | ENST00000398356 | + | 5 | 13 | 436_456 | 142.33333333333334 | 504.0 | Transmembrane | Helical%3B Name%3D12 |
Tgene | LLPH | chr22:24217428 | chr12:66517798 | ENST00000266604 | 1 | 3 | 3_125 | 70.33333333333333 | 130.0 | Compositional bias | Note=Lys-rich | |
Tgene | LLPH | chr22:24217428 | chr12:66517798 | ENST00000446587 | 1 | 3 | 3_125 | 70.33333333333333 | 130.0 | Compositional bias | Note=Lys-rich |
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Fusion Gene Sequence for SLC2A11-LLPH |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000345044_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1631nt_BP=674nt CTATGTTTCTGTGACCACAAATAGCATCTTTGGCAAGTCTAGTTTCAGTTGGTCTTTGTCCAGCTCCTGGATTCCTCCATGCAGGGCCTG AGAAGCCCTGAGGGATAAAAGATTAATCCGGTTCAGTGGACTCTGTGGTTCCTCAACTCCAAGTGCCCCCAGCATAAGTCGGACCTGCCT CTCACGCAATGGATCCCCTGGCGGCAACCCGAGACCGGTTCTCCTACCCGCATTCCGCCAAGTCTCTCGCTCTGCCCAGGACGCACAGAT GAGAGCGCTCCGAAGACTGATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAA CCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCA CCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCAC GCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAATCCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTT TGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCT TCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAGGCAAAGAAAAAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAG CAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAGACTCTTAAAACCTTGGAAAATGCCACATGGGATAGATGACGGATTAG AATGTATACACATGTATACTTTGATTTCAACTGCCACCAAATGAAAACCATTTGTTTTCCTATTTTAACTTGGCCTTTTTTCTTCAATTC AAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAATAAAATATTTTCTTTGATACATCCAAGCTCTACTGATACTTTAACTGGA TGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGTCAGGTATTAATATGGTTAGAATTGTTCTTACAACTGGTAATTATAGTC AATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAACTTAGATTTTAAAGAAAGTTGTTGTATAATCATATCATTTAAAAATAC TACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGTTCGAGACTA GCCTGGCTAATACAGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCGGGCATGGGGGCGCGCACCTGTAGTTCCAGCTACTCGGG AGGCTGAGGCAGGATAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCAAGATTGCCCCACTGCACTCCACCCTGGGCAATGGAG TAGGACTCTGTCTCAAAAAAAAAAAAAATAATGGATCTTATAAAGTACTTGTGTGGAGCTTTGATTCCACAGAATAAAAGATATTTTGTG >In-frame_ENST00000345044_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=251AA_start in transcript=97_stop in transcript=852 MRDKRLIRFSGLCGSSTPSAPSISRTCLSRNGSPGGNPRPVLLPAFRQVSRSAQDAQMRALRRLIQGRILLLTICAAGIGGTFQFGYNLS IINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEM -------------------------------------------------------------- >In-frame_ENST00000345044_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1386nt_BP=674nt CTATGTTTCTGTGACCACAAATAGCATCTTTGGCAAGTCTAGTTTCAGTTGGTCTTTGTCCAGCTCCTGGATTCCTCCATGCAGGGCCTG AGAAGCCCTGAGGGATAAAAGATTAATCCGGTTCAGTGGACTCTGTGGTTCCTCAACTCCAAGTGCCCCCAGCATAAGTCGGACCTGCCT CTCACGCAATGGATCCCCTGGCGGCAACCCGAGACCGGTTCTCCTACCCGCATTCCGCCAAGTCTCTCGCTCTGCCCAGGACGCACAGAT GAGAGCGCTCCGAAGACTGATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAA CCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCA CCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCAC GCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAATCCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTT TGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCT TCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAGGCAAAGAAAAAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAG CAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAGACTCTTAAAACCTTGGAAAATGCCACATGGGATAGATGACGGATTAG AATGTATACACATGTATACTTTGATTTCAACTGCCACCAAATGAAAACCATTTGTTTTCCTATTTTAACTTGGCCTTTTTTCTTCAATTC AAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAATAAAATATTTTCTTTGATACATCCAAGCTCTACTGATACTTTAACTGGA TGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGTCAGGTATTAATATGGTTAGAATTGTTCTTACAACTGGTAATTATAGTC AATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAACTTAGATTTTAAAGAAAGTTGTTGTATAATCATATCATTTAAAAATAC TACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGTTCGAGACTA >In-frame_ENST00000345044_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=251AA_start in transcript=97_stop in transcript=852 MRDKRLIRFSGLCGSSTPSAPSISRTCLSRNGSPGGNPRPVLLPAFRQVSRSAQDAQMRALRRLIQGRILLLTICAAGIGGTFQFGYNLS IINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEM -------------------------------------------------------------- >In-frame_ENST00000398356_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1573nt_BP=616nt CGGACCTGCCTCTCACGCAATGGATCCCCTGGCGGCAACCCGAGACCGGTTCTCCTACCCGCATTCCGCCAAGTCTCTCGCTCTGCCCAG GACGCACAGATGAGAGCGCTCCGAAGACTGAGATGAGCTTGGGGCTTAGCCGAGTAAGGAGTGAGCGGCTTTTCAGCCTCAGTGCTGCGG CAGAGGCGGATGGAGGATGAACTGGAGCCGTCCTTACGGCCTCGGACGCAGATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCC GGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAATGAGACATGG CAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTT GGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAATC CTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGATGACATGAAAATG GAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAGGCAAAGAAAAAGGCTG AAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAGACTCTTAAAACCTTG GAAAATGCCACATGGGATAGATGACGGATTAGAATGTATACACATGTATACTTTGATTTCAACTGCCACCAAATGAAAACCATTTGTTTT CCTATTTTAACTTGGCCTTTTTTCTTCAATTCAAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAATAAAATATTTTCTTTGA TACATCCAAGCTCTACTGATACTTTAACTGGATGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGTCAGGTATTAATATGGT TAGAATTGTTCTTACAACTGGTAATTATAGTCAATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAACTTAGATTTTAAAGAA AGTTGTTGTATAATCATATCATTTAAAAATACTACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGA GGCAGGTGGATCACGAGGTCAGTTCGAGACTAGCCTGGCTAATACAGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCGGGCATG GGGGCGCGCACCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGATAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCAAGAT TGCCCCACTGCACTCCACCCTGGGCAATGGAGTAGGACTCTGTCTCAAAAAAAAAAAAAATAATGGATCTTATAAAGTACTTGTGTGGAG >In-frame_ENST00000398356_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=206AA_start in transcript=174_stop in transcript=794 MRQRRMEDELEPSLRPRTQIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGG LFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNADDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRK -------------------------------------------------------------- >In-frame_ENST00000398356_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1328nt_BP=616nt CGGACCTGCCTCTCACGCAATGGATCCCCTGGCGGCAACCCGAGACCGGTTCTCCTACCCGCATTCCGCCAAGTCTCTCGCTCTGCCCAG GACGCACAGATGAGAGCGCTCCGAAGACTGAGATGAGCTTGGGGCTTAGCCGAGTAAGGAGTGAGCGGCTTTTCAGCCTCAGTGCTGCGG CAGAGGCGGATGGAGGATGAACTGGAGCCGTCCTTACGGCCTCGGACGCAGATTCAGGGCAGGATCCTGCTCCTGACCATCTGCGCTGCC GGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAATGAGACATGG CAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTT GGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAATC CTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGATGACATGAAAATG GAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAGGCAAAGAAAAAGGCTG AAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAGACTCTTAAAACCTTG GAAAATGCCACATGGGATAGATGACGGATTAGAATGTATACACATGTATACTTTGATTTCAACTGCCACCAAATGAAAACCATTTGTTTT CCTATTTTAACTTGGCCTTTTTTCTTCAATTCAAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAATAAAATATTTTCTTTGA TACATCCAAGCTCTACTGATACTTTAACTGGATGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGTCAGGTATTAATATGGT TAGAATTGTTCTTACAACTGGTAATTATAGTCAATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAACTTAGATTTTAAAGAA AGTTGTTGTATAATCATATCATTTAAAAATACTACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGA >In-frame_ENST00000398356_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=206AA_start in transcript=174_stop in transcript=794 MRQRRMEDELEPSLRPRTQIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGG LFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNADDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRK -------------------------------------------------------------- >In-frame_ENST00000405847_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1400nt_BP=443nt ATTCCGCCAAGTCTCTCGCTCTGCCCAGGACGCACAGATGAGAGCGCTCCGAAGACTGATTCAGGGCAGGATCCTGCTCCTGACCATCTG CGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAATGA GACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGG CCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGC AGCAATCCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGATGACAT GAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAGGCAAAGAAA AAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAGACTCTTAA AACCTTGGAAAATGCCACATGGGATAGATGACGGATTAGAATGTATACACATGTATACTTTGATTTCAACTGCCACCAAATGAAAACCAT TTGTTTTCCTATTTTAACTTGGCCTTTTTTCTTCAATTCAAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAATAAAATATTT TCTTTGATACATCCAAGCTCTACTGATACTTTAACTGGATGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGTCAGGTATTA ATATGGTTAGAATTGTTCTTACAACTGGTAATTATAGTCAATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAACTTAGATTT TAAAGAAAGTTGTTGTATAATCATATCATTTAAAAATACTACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGG AGGCCGAGGCAGGTGGATCACGAGGTCAGTTCGAGACTAGCCTGGCTAATACAGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCC GGGCATGGGGGCGCGCACCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGATAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAG CCAAGATTGCCCCACTGCACTCCACCCTGGGCAATGGAGTAGGACTCTGTCTCAAAAAAAAAAAAAATAATGGATCTTATAAAGTACTTG >In-frame_ENST00000405847_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=194AA_start in transcript=37_stop in transcript=621 MRALRRLIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGGLFGALLAGPLAI TLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNADDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGK -------------------------------------------------------------- >In-frame_ENST00000405847_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1155nt_BP=443nt ATTCCGCCAAGTCTCTCGCTCTGCCCAGGACGCACAGATGAGAGCGCTCCGAAGACTGATTCAGGGCAGGATCCTGCTCCTGACCATCTG CGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATTCACCAATGA GACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGG CCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGC AGCAATCCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGCAGATGACAT GAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAGGCAAAGAAA AAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTAGACTCTTAA AACCTTGGAAAATGCCACATGGGATAGATGACGGATTAGAATGTATACACATGTATACTTTGATTTCAACTGCCACCAAATGAAAACCAT TTGTTTTCCTATTTTAACTTGGCCTTTTTTCTTCAATTCAAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAATAAAATATTT TCTTTGATACATCCAAGCTCTACTGATACTTTAACTGGATGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGTCAGGTATTA ATATGGTTAGAATTGTTCTTACAACTGGTAATTATAGTCAATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAACTTAGATTT TAAAGAAAGTTGTTGTATAATCATATCATTTAAAAATACTACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGG >In-frame_ENST00000405847_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=201AA_start in transcript=821_stop in transcript=216 MYQRKYFIQVPKTNLRSYAGFELKKKGQVKIGKQMVFIWWQLKSKYTCVYILIRHLSHVAFSKVLRVYQAKPFATFTAFALLFPFLFSRF AFSLFLCLWFIHIGYCPCWSRRVFLFLLISVSIFMSSALTPTSSLPSMIISKEPALRLNPNRIAADTTKMLFTRRDFFLPSVMAKGPASS -------------------------------------------------------------- >In-frame_ENST00000316185_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1409nt_BP=452nt TGGGACAGCAAGACCTCCGCTCAGGCCCCTCTTTCGAATGCTCCACGCCCTCCTGCGATCTAGAATGATTCAGGGCAGGATCCTGCTCCT GACCATCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATT CACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCC CCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGT GGTGTCAGCAGCAATCCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGC AGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAG GCAAAGAAAAAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTA GACTCTTAAAACCTTGGAAAATGCCACATGGGATAGATGACGGATTAGAATGTATACACATGTATACTTTGATTTCAACTGCCACCAAAT GAAAACCATTTGTTTTCCTATTTTAACTTGGCCTTTTTTCTTCAATTCAAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAAT AAAATATTTTCTTTGATACATCCAAGCTCTACTGATACTTTAACTGGATGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGT CAGGTATTAATATGGTTAGAATTGTTCTTACAACTGGTAATTATAGTCAATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAA CTTAGATTTTAAAGAAAGTTGTTGTATAATCATATCATTTAAAAATACTACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAG CACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGTTCGAGACTAGCCTGGCTAATACAGTGAAACCCCATCTCTACTAAAAATACA AAATTAGCCGGGCATGGGGGCGCGCACCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGATAATTGCTTGAACCCAGGAGATGGAGGT TGCAGTGAGCCAAGATTGCCCCACTGCACTCCACCCTGGGCAATGGAGTAGGACTCTGTCTCAAAAAAAAAAAAAATAATGGATCTTATA >In-frame_ENST00000316185_ENST00000266604_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=197AA_start in transcript=37_stop in transcript=630 MLHALLRSRMIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLVLLMWSLIVSLYPLGGLFGALLAGP LAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGVNADDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKR -------------------------------------------------------------- >In-frame_ENST00000316185_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(transcript)=1164nt_BP=452nt TGGGACAGCAAGACCTCCGCTCAGGCCCCTCTTTCGAATGCTCCACGCCCTCCTGCGATCTAGAATGATTCAGGGCAGGATCCTGCTCCT GACCATCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTTGCACATTCAGGAATT CACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTCCTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCC CCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTCCCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGT GGTGTCAGCAGCAATCCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTCAATGC AGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCCAATATGGATGAACCAAAG GCAAAGAAAAAGGCTGAAGGCAAAGCGAGAGAAAAGAAAGGGGAAAAGCAAAGCAAAAGCAGTGAAAGTGGCAAAGGGTTTGGCCTGGTA GACTCTTAAAACCTTGGAAAATGCCACATGGGATAGATGACGGATTAGAATGTATACACATGTATACTTTGATTTCAACTGCCACCAAAT GAAAACCATTTGTTTTCCTATTTTAACTTGGCCTTTTTTCTTCAATTCAAACCCAGCATAACTCCTCAAGTTTGTTTTGGGAACTTGAAT AAAATATTTTCTTTGATACATCCAAGCTCTACTGATACTTTAACTGGATGCTACCCAATATCCAGTTATAATCAGGCCTCAACGTTCTGT CAGGTATTAATATGGTTAGAATTGTTCTTACAACTGGTAATTATAGTCAATAGAGATAAAACAGATGATGTACTGACAAATTTTTGTGAA CTTAGATTTTAAAGAAAGTTGTTGTATAATCATATCATTTAAAAATACTACATTAGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAG >In-frame_ENST00000316185_ENST00000446587_TCGA-DQ-5624-01A_SLC2A11_chr22_24217428_+_LLPH_chr12_66517798_length(amino acids)=201AA_start in transcript=830_stop in transcript=225 MYQRKYFIQVPKTNLRSYAGFELKKKGQVKIGKQMVFIWWQLKSKYTCVYILIRHLSHVAFSKVLRVYQAKPFATFTAFALLFPFLFSRF AFSLFLCLWFIHIGYCPCWSRRVFLFLLISVSIFMSSALTPTSSLPSMIISKEPALRLNPNRIAADTTKMLFTRRDFFLPSVMAKGPASS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SLC2A11-LLPH |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SLC2A11-LLPH |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SLC2A11-LLPH |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |