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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SNRNP40-EPB41 (FusionGDB2 ID:84143)

Fusion Gene Summary for SNRNP40-EPB41

check button Fusion gene summary
Fusion gene informationFusion gene name: SNRNP40-EPB41
Fusion gene ID: 84143
HgeneTgene
Gene symbol

SNRNP40

EPB41

Gene ID

9410

2035

Gene namesmall nuclear ribonucleoprotein U5 subunit 40erythrocyte membrane protein band 4.1
Synonyms40K|HPRP8BP|PRP8BP|PRPF8BP|SPF38|WDR574.1R|EL1|HE
Cytomap

1p35.2

1p35.3

Type of geneprotein-codingprotein-coding
DescriptionU5 small nuclear ribonucleoprotein 40 kDa protein38 kDa-splicing factorPrp8-binding proteinU5 snRNP 40 kDa proteinU5 snRNP-specific 40 kDa protein (hPrp8-binding)U5-40KU5-40kD proteinWD repeat domain 57 (U5 snRNP specific)WD repeat-containing protprotein 4.1EPB4.1P4.1band 4.1elliptocytosis 1, RH-linkederythrocyte surface protein band 4.1
Modification date2020031320200320
UniProtAcc.

Q9HCM4

Ensembl transtripts involved in fusion geneENST00000263694, ENST00000489853, 
ENST00000373720, ENST00000446633, 
ENST00000356093, ENST00000398863, 
ENST00000343067, ENST00000349460, 
ENST00000373800, ENST00000347529, 
ENST00000373798, ENST00000373797, 
ENST00000460378, 
Fusion gene scores* DoF score7 X 6 X 6=25213 X 13 X 6=1014
# samples 715
** MAII scorelog2(7/252*10)=-1.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(15/1014*10)=-2.75702324650746
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SNRNP40 [Title/Abstract] AND EPB41 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSNRNP40(31762101)-EPB41(29365766), # samples:2
Anticipated loss of major functional domain due to fusion event.SNRNP40-EPB41 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
SNRNP40-EPB41 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF.
SNRNP40-EPB41 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
SNRNP40-EPB41 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneEPB41

GO:0032092

positive regulation of protein binding

3693401


check buttonFusion gene breakpoints across SNRNP40 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across EPB41 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4HNSCTCGA-DQ-7591-01ASNRNP40chr1

31762101

-EPB41chr1

29365766

+
ChimerDB4HNSCTCGA-DQ-7591-01ASNRNP40chr1

31762101

-EPB41chr1

29365766

+


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Fusion Gene ORF analysis for SNRNP40-EPB41

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000263694ENST00000356093SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000398863SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000343067SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000349460SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000373800SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000347529SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000373798SNRNP40chr1

31762101

-EPB41chr1

29365766

+
Frame-shiftENST00000263694ENST00000373797SNRNP40chr1

31762101

-EPB41chr1

29365766

+
5CDS-intronENST00000263694ENST00000460378SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000356093SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000398863SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000343067SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000349460SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000373800SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000347529SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000373798SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000489853ENST00000373797SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-intronENST00000489853ENST00000460378SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000356093SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000398863SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000343067SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000349460SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000373800SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000347529SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000373798SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-3CDSENST00000373720ENST00000373797SNRNP40chr1

31762101

-EPB41chr1

29365766

+
intron-intronENST00000373720ENST00000460378SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000356093SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000398863SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000343067SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000349460SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000373800SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000347529SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000373798SNRNP40chr1

31762101

-EPB41chr1

29365766

+
In-frameENST00000446633ENST00000373797SNRNP40chr1

31762101

-EPB41chr1

29365766

+
5CDS-intronENST00000446633ENST00000460378SNRNP40chr1

31762101

-EPB41chr1

29365766

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000446633SNRNP40chr131762101-ENST00000356093EPB41chr129365766+48365955601627355
ENST00000446633SNRNP40chr131762101-ENST00000398863EPB41chr129365766+46445955601435291
ENST00000446633SNRNP40chr131762101-ENST00000343067EPB41chr129365766+49355955601726388
ENST00000446633SNRNP40chr131762101-ENST00000349460EPB41chr129365766+19875955601684374
ENST00000446633SNRNP40chr131762101-ENST00000373800EPB41chr129365766+18285955601525321
ENST00000446633SNRNP40chr131762101-ENST00000347529EPB41chr129365766+18675955601564334
ENST00000446633SNRNP40chr131762101-ENST00000373798EPB41chr129365766+49565955601726388
ENST00000446633SNRNP40chr131762101-ENST00000373797EPB41chr129365766+13375955601294244

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000446633ENST00000356093SNRNP40chr131762101-EPB41chr129365766+0.0019180240.99808204
ENST00000446633ENST00000398863SNRNP40chr131762101-EPB41chr129365766+0.0024886490.9975114
ENST00000446633ENST00000343067SNRNP40chr131762101-EPB41chr129365766+0.0011823650.9988176
ENST00000446633ENST00000349460SNRNP40chr131762101-EPB41chr129365766+0.0022883030.99771166
ENST00000446633ENST00000373800SNRNP40chr131762101-EPB41chr129365766+0.0024204660.9975795
ENST00000446633ENST00000347529SNRNP40chr131762101-EPB41chr129365766+0.0025804180.9974196
ENST00000446633ENST00000373798SNRNP40chr131762101-EPB41chr129365766+0.001128890.998871
ENST00000446633ENST00000373797SNRNP40chr131762101-EPB41chr129365766+0.0020055760.9979944

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Fusion Genomic Features for SNRNP40-EPB41


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
SNRNP40chr131762100-EPB41chr129365765+3.32E-060.99999666
SNRNP40chr131762100-EPB41chr129365765+3.32E-060.99999666

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SNRNP40-EPB41


check button Go to

FGviewer for the breakpoints of chr1:31762101-chr1:29365766

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.EPB41

Q9HCM4

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Plays a role in the formation and organization of tight junctions during the establishment of polarity in epithelial cells. {ECO:0000269|PubMed:17920587}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-410107_146177.0358.0RepeatNote=WD 2
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-41064_103177.0358.0RepeatNote=WD 1
TgeneEPB41chr1:31762101chr1:29365766ENST00000343067921494_614487.66666666666671892.3333333333333RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST00000343067921615_713487.66666666666671892.3333333333333RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST00000343067921714_864487.66666666666671892.3333333333333RegionNote=C-terminal (CTD)
TgeneEPB41chr1:31762101chr1:29365766ENST00000347529817494_614452.6666666666667861.6666666666666RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST00000347529817615_713452.6666666666667861.6666666666666RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST00000347529817714_864452.6666666666667861.6666666666666RegionNote=C-terminal (CTD)
TgeneEPB41chr1:31762101chr1:29365766ENST000003494601021494_614278.6666666666667711.6666666666666RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST000003494601021615_713278.6666666666667711.6666666666666RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST000003494601021714_864278.6666666666667711.6666666666666RegionNote=C-terminal (CTD)
TgeneEPB41chr1:31762101chr1:29365766ENST00000356093919494_614487.66666666666671859.3333333333333RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST00000356093919615_713487.66666666666671859.3333333333333RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST00000356093919714_864487.66666666666671859.3333333333333RegionNote=C-terminal (CTD)
TgeneEPB41chr1:31762101chr1:29365766ENST00000373797915494_614487.6666666666667721.0RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST00000373797915615_713487.6666666666667721.0RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST00000373797915714_864487.6666666666667721.0RegionNote=C-terminal (CTD)
TgeneEPB41chr1:31762101chr1:29365766ENST00000373798921494_614487.66666666666671907.0RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST00000373798921615_713487.66666666666671907.0RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST00000373798921714_864487.66666666666671907.0RegionNote=C-terminal (CTD)
TgeneEPB41chr1:31762101chr1:29365766ENST000003738001019494_614278.6666666666667658.6666666666666RegionNote=Hydrophilic
TgeneEPB41chr1:31762101chr1:29365766ENST000003738001019615_713278.6666666666667658.6666666666666RegionNote=Spectrin--actin-binding
TgeneEPB41chr1:31762101chr1:29365766ENST000003738001019714_864278.6666666666667658.6666666666666RegionNote=C-terminal (CTD)

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-410149_189177.0358.0RepeatNote=WD 3
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-410191_230177.0358.0RepeatNote=WD 4
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-410233_272177.0358.0RepeatNote=WD 5
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-410283_322177.0358.0RepeatNote=WD 6
HgeneSNRNP40chr1:31762101chr1:29365766ENST00000263694-410325_357177.0358.0RepeatNote=WD 7
TgeneEPB41chr1:31762101chr1:29365766ENST00000343067921210_491487.66666666666671892.3333333333333DomainFERM
TgeneEPB41chr1:31762101chr1:29365766ENST00000347529817210_491452.6666666666667861.6666666666666DomainFERM
TgeneEPB41chr1:31762101chr1:29365766ENST000003494601021210_491278.6666666666667711.6666666666666DomainFERM
TgeneEPB41chr1:31762101chr1:29365766ENST00000356093919210_491487.66666666666671859.3333333333333DomainFERM
TgeneEPB41chr1:31762101chr1:29365766ENST00000373797915210_491487.6666666666667721.0DomainFERM
TgeneEPB41chr1:31762101chr1:29365766ENST00000373798921210_491487.66666666666671907.0DomainFERM
TgeneEPB41chr1:31762101chr1:29365766ENST000003738001019210_491278.6666666666667658.6666666666666DomainFERM


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Fusion Gene Sequence for SNRNP40-EPB41


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000446633_ENST00000356093_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=4836nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAAA
GACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATG
CCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCAC
CCTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCTCAGATAATG
CCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGACTG
ACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAA
TTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGG
TCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTG
ATGAGTGAGCTCAGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTAACCTGCCAT
AGTCAGACTTCAGACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAGAGATTCTTCTAG
ATCTCATTGATCCTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCACTCTATAGACTGTTTTAAGAGTTTTGG
GGTTTTTTTAATTGGGTGGTTTGTAACCCCTTCAGCCTAGCCTCTCTGCCCATTTATTTCCAACCCCAACAGACACTGACAGGGTCCATG
GAATTCTTCGGGAAATCCTCCAAGGACTCTTGTCAGCTGTGTTGGAAGCCAAAGCCAGCTTAGTGGGACTTCCGCGTCTCTCCCTAGTCT
TATCCCCTTTGGATGATGGCAGAAACTTCATGAACCAGCCCTTTCTCAGAGCCAGTGATGTGAGTGTATCAGAATGCCAGGGAGGGCACC
AGCCCTGATCCACAGACCTCGGAAAGATGCCCCTGTTCCTTTGTTGCGGGTGGTTTTGGTAAGGCAGAGCCCTCTGCTGAGAATGTAGTA
TTGTTTTTCCCCTCTCCCTCCTGCTTTCTTTTTGGAGCTTCTTTGGGTCAAAGACATGGAAGTTGCTTCAGATATCTGATACTGTGAATG
TTTGAACATATCCGTGGCCTTCACCTCTCCAGCTACCCTTTTACCTCATCAGAAGCAGTGGCTCAGCTAAGTGCTCCCCCTAGCTCCCAT
CTCAGGAGACCAAATCTCACAGAAAAATAGGCACTTTGGGCCAAAAGCTCTAATGGAACATTTTTAGTGGTGATTTGGGGAAGGAAAGTT
AATGAGGTTTTTAAAATAAGGTTTTCTAGTTTTGAGAGTGTGCACTTCACACAGGGGAATGGGGTTACTTCTGTCTGATCCTGGGCCTTT
CTTTCATCCCAAATGACAAGGAATGTGGCTCAGAGAAGGGTTTTTCTTTTTTGACCTTTCTTCTCTCAACAGGAACCTGCCTGAGGACAC
CCTTCTAGAGCAAGGAATTGACTTTTAGGAGCCGTTCTCCCCACAAGACACCACATGACAAGGGGTATAAGCCCCAGCCCTGCTCATTCC
CACTCACCAGCTGAGGTCTGTCAGGTTTTGAAGGCTTGATTTTGTGGTGGGTTTGGGGCTTAGTTTTCCTTTTTTTCATTTTGATTTTTG
AAAGTGAAGATGATGCCCTAATTCCTGGTAAGGATTTGGGGCATAGTTTTTTGTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAAGC
TGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGA
TGACAGGCGCACACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAAACGGGATTTCACCTTGTTAGGCTGGTCTCGAACTCCTGA
CCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGGGCATTTTTATTT
AACAGAACTTCTCTAACCTTCCAACTGCTTCCCACAAACACATTGGCCTCAAGGCTCCTTAGAATCCCAGTTCCAGCTTCCTAAAATAGA
CAGTGGGTATCGGGCAGCAGTCACTGGGGCTCAAGGGCAGTGAGCAAGAGAAATGTCTAAAGCTGCTTCTCCCAACACCGTCCAAAGTCT
CCACTGCCTGAGTTTTGTTTCGGCTGGTTTGAACTCATTTCGGGTGTGTGCATTTTTCTTTTGGTACCCATGTGAGACATGAACAACAGG
AGGGAGGGAAAGAGCCCAGGTGGGACGTGGGACAGGCTTAGGGGAAAGAGCTTGTCCTATCTCAGGAACAAAATTATAGGCTGTGGGCAG
AGGGTCTGAAAGGTGGGCTTTGGGGTAGTGCCCAAGCCTGGTCGTGTTGCCAGGAGTGGTGACAAGAAATGCAGCTTACATCAAACGAAC
ATGTAGTGCATGCCCACTGCCTGATGGCCAGATGGCCTGTAGGAAGAGCTACCAGGGCTTCCAGACCTGTGGAACGAAGAGGATGGGGAA
AAGGCAGAGGGCACTGAGTGTCCCTTTAAAAACTAACCCACTGAATATTCCGTGTGATCTAGAACAGTGTGGCAGCTTTCACAGCACAGG
ACCGTTCATCGGGGGCCTAAACGTTTCCCTCAGCTCTGTCACCAACTCACTTCTCTCGGCTTCGTTGTCTGTAAATTGGATGAAAAGAGC
TCTAATGCCTTTCAGGCTCTTAGAAGCCATAGATTTGGACAAGCCCAGCAAGATGGGTGTCCTTCCAGGCCTCTTCCCCTTTCCTCCATC
TCTGGCAACAGTTCTTGGGGTTTGGCAATTGTTTGGATTTTTTTTCTTTCTGCAGTTGTGTGTATGTGTGTTTGTGTGAAGAAAAACAGA
CTCTGTCCAGGTAGAAATGGTGAGGAGGGGGAAGAGAATTACATTTCCAGGGTCAGAAACTTGGCAACAGTTTTCCTAGAGTGACTCAGA
CACACCACAGTAACAACTCTCGCTGCAATTTTATTTTAATTTGAGAAATAAAGATTTCCTCCAAGCCACATGAGGACTCTGGCACCCACC
CACAAAGCAAGACCTGTATTTATAAGCCGAGGGCTCAGGGAGCCTAACTGCGGGACCCGTCAGGGCCCCGTGACCCATCCCCGTCCCCAC
CCCCCCCTCCACCGCTGGGCCCATCAGTGTGTGTTGGGGGGATGCTTGGCAGCTGGGGGTGAGGAGACAACAAACCTCGGGAACTGGAGC
CAGAGCTGCGGCCTGACTGACGCCTTTTGATGCTCACGGGAAATTTCTGCCCAGGATCTCAGCCCCAGGCTGGTTGTTTCTACAAATCTC
TCTCAAATGTATTATTTTGGTGACAAAAATGAAGGAGCTTTGTAAATTTTTTTTAAAATTATGAATCATATCAAGTAGTTGTTTACATTT
CTTGAAAAAATAGGAACTCGGGCAGCAGAATCAGATTGGCAGAATCTTTAGACTACACAGGCAATAATCAAGTCTGCTGTTTTGGCCTTT

>In-frame_ENST00000446633_ENST00000356093_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=355AA_start in transcript=560_stop in transcript=1627
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELK
KNFMESVPEPRPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDNANAVKSEIPTKDVPIVHTETKTITYEAAQTDDNSGDL

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000398863_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=4644nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGATTTAGACAAGA
GTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAAT
GGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGAACTGACGACAACAGTG
GAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTG
TAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAG
CCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGATGAGTGAGCTC
AGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTAACCTGCCATAGTCAGACTTCA
GACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAGAGATTCTTCTAGATCTCATTGATC
CTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCACTCTATAGACTGTTTTAAGAGTTTTGGGGTTTTTTTAAT
TGGGTGGTTTGTAACCCCTTCAGCCTAGCCTCTCTGCCCATTTATTTCCAACCCCAACAGACACTGACAGGGTCCATGGAATTCTTCGGG
AAATCCTCCAAGGACTCTTGTCAGCTGTGTTGGAAGCCAAAGCCAGCTTAGTGGGACTTCCGCGTCTCTCCCTAGTCTTATCCCCTTTGG
ATGATGGCAGAAACTTCATGAACCAGCCCTTTCTCAGAGCCAGTGATGTGAGTGTATCAGAATGCCAGGGAGGGCACCAGCCCTGATCCA
CAGACCTCGGAAAGATGCCCCTGTTCCTTTGTTGCGGGTGGTTTTGGTAAGGCAGAGCCCTCTGCTGAGAATGTAGTATTGTTTTTCCCC
TCTCCCTCCTGCTTTCTTTTTGGAGCTTCTTTGGGTCAAAGACATGGAAGTTGCTTCAGATATCTGATACTGTGAATGTTTGAACATATC
CGTGGCCTTCACCTCTCCAGCTACCCTTTTACCTCATCAGAAGCAGTGGCTCAGCTAAGTGCTCCCCCTAGCTCCCATCTCAGGAGACCA
AATCTCACAGAAAAATAGGCACTTTGGGCCAAAAGCTCTAATGGAACATTTTTAGTGGTGATTTGGGGAAGGAAAGTTAATGAGGTTTTT
AAAATAAGGTTTTCTAGTTTTGAGAGTGTGCACTTCACACAGGGGAATGGGGTTACTTCTGTCTGATCCTGGGCCTTTCTTTCATCCCAA
ATGACAAGGAATGTGGCTCAGAGAAGGGTTTTTCTTTTTTGACCTTTCTTCTCTCAACAGGAACCTGCCTGAGGACACCCTTCTAGAGCA
AGGAATTGACTTTTAGGAGCCGTTCTCCCCACAAGACACCACATGACAAGGGGTATAAGCCCCAGCCCTGCTCATTCCCACTCACCAGCT
GAGGTCTGTCAGGTTTTGAAGGCTTGATTTTGTGGTGGGTTTGGGGCTTAGTTTTCCTTTTTTTCATTTTGATTTTTGAAAGTGAAGATG
ATGCCCTAATTCCTGGTAAGGATTTGGGGCATAGTTTTTTGTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAGTG
GCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGATGACAGGCGCAC
ACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAAACGGGATTTCACCTTGTTAGGCTGGTCTCGAACTCCTGACCTCAGGTGATC
CACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGGGCATTTTTATTTAACAGAACTTCT
CTAACCTTCCAACTGCTTCCCACAAACACATTGGCCTCAAGGCTCCTTAGAATCCCAGTTCCAGCTTCCTAAAATAGACAGTGGGTATCG
GGCAGCAGTCACTGGGGCTCAAGGGCAGTGAGCAAGAGAAATGTCTAAAGCTGCTTCTCCCAACACCGTCCAAAGTCTCCACTGCCTGAG
TTTTGTTTCGGCTGGTTTGAACTCATTTCGGGTGTGTGCATTTTTCTTTTGGTACCCATGTGAGACATGAACAACAGGAGGGAGGGAAAG
AGCCCAGGTGGGACGTGGGACAGGCTTAGGGGAAAGAGCTTGTCCTATCTCAGGAACAAAATTATAGGCTGTGGGCAGAGGGTCTGAAAG
GTGGGCTTTGGGGTAGTGCCCAAGCCTGGTCGTGTTGCCAGGAGTGGTGACAAGAAATGCAGCTTACATCAAACGAACATGTAGTGCATG
CCCACTGCCTGATGGCCAGATGGCCTGTAGGAAGAGCTACCAGGGCTTCCAGACCTGTGGAACGAAGAGGATGGGGAAAAGGCAGAGGGC
ACTGAGTGTCCCTTTAAAAACTAACCCACTGAATATTCCGTGTGATCTAGAACAGTGTGGCAGCTTTCACAGCACAGGACCGTTCATCGG
GGGCCTAAACGTTTCCCTCAGCTCTGTCACCAACTCACTTCTCTCGGCTTCGTTGTCTGTAAATTGGATGAAAAGAGCTCTAATGCCTTT
CAGGCTCTTAGAAGCCATAGATTTGGACAAGCCCAGCAAGATGGGTGTCCTTCCAGGCCTCTTCCCCTTTCCTCCATCTCTGGCAACAGT
TCTTGGGGTTTGGCAATTGTTTGGATTTTTTTTCTTTCTGCAGTTGTGTGTATGTGTGTTTGTGTGAAGAAAAACAGACTCTGTCCAGGT
AGAAATGGTGAGGAGGGGGAAGAGAATTACATTTCCAGGGTCAGAAACTTGGCAACAGTTTTCCTAGAGTGACTCAGACACACCACAGTA
ACAACTCTCGCTGCAATTTTATTTTAATTTGAGAAATAAAGATTTCCTCCAAGCCACATGAGGACTCTGGCACCCACCCACAAAGCAAGA
CCTGTATTTATAAGCCGAGGGCTCAGGGAGCCTAACTGCGGGACCCGTCAGGGCCCCGTGACCCATCCCCGTCCCCACCCCCCCCTCCAC
CGCTGGGCCCATCAGTGTGTGTTGGGGGGATGCTTGGCAGCTGGGGGTGAGGAGACAACAAACCTCGGGAACTGGAGCCAGAGCTGCGGC
CTGACTGACGCCTTTTGATGCTCACGGGAAATTTCTGCCCAGGATCTCAGCCCCAGGCTGGTTGTTTCTACAAATCTCTCTCAAATGTAT
TATTTTGGTGACAAAAATGAAGGAGCTTTGTAAATTTTTTTTAAAATTATGAATCATATCAAGTAGTTGTTTACATTTCTTGAAAAAATA
GGAACTCGGGCAGCAGAATCAGATTGGCAGAATCTTTAGACTACACAGGCAATAATCAAGTCTGCTGTTTTGGCCTTTCGTAGTAGAAGT

>In-frame_ENST00000446633_ENST00000398863_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=291AA_start in transcript=560_stop in transcript=1435
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKDLDKSQEEIKKHHASISELKKNFMESVPEPRPSEWDKRLST
HSPFRTLNINGQIPTGEGTDDNSGDLDPGVLLTAQTITSETPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKE

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000343067_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=4935nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCC
ACATCGAGGTGACAGTACCCACCTCAAATGGTGACCAAACACAGAAGCTTGCAGAAAAAACTGAAGATCTGATAAGAATGAGGAAGAAAA
AGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAA
AACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCA
CTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCT
CAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTG
CCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCA
CAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACC
ATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCG
AGATTGCTGATGAGTGAGCTCAGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTA
ACCTGCCATAGTCAGACTTCAGACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAGAGA
TTCTTCTAGATCTCATTGATCCTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCACTCTATAGACTGTTTTAA
GAGTTTTGGGGTTTTTTTAATTGGGTGGTTTGTAACCCCTTCAGCCTAGCCTCTCTGCCCATTTATTTCCAACCCCAACAGACACTGACA
GGGTCCATGGAATTCTTCGGGAAATCCTCCAAGGACTCTTGTCAGCTGTGTTGGAAGCCAAAGCCAGCTTAGTGGGACTTCCGCGTCTCT
CCCTAGTCTTATCCCCTTTGGATGATGGCAGAAACTTCATGAACCAGCCCTTTCTCAGAGCCAGTGATGTGAGTGTATCAGAATGCCAGG
GAGGGCACCAGCCCTGATCCACAGACCTCGGAAAGATGCCCCTGTTCCTTTGTTGCGGGTGGTTTTGGTAAGGCAGAGCCCTCTGCTGAG
AATGTAGTATTGTTTTTCCCCTCTCCCTCCTGCTTTCTTTTTGGAGCTTCTTTGGGTCAAAGACATGGAAGTTGCTTCAGATATCTGATA
CTGTGAATGTTTGAACATATCCGTGGCCTTCACCTCTCCAGCTACCCTTTTACCTCATCAGAAGCAGTGGCTCAGCTAAGTGCTCCCCCT
AGCTCCCATCTCAGGAGACCAAATCTCACAGAAAAATAGGCACTTTGGGCCAAAAGCTCTAATGGAACATTTTTAGTGGTGATTTGGGGA
AGGAAAGTTAATGAGGTTTTTAAAATAAGGTTTTCTAGTTTTGAGAGTGTGCACTTCACACAGGGGAATGGGGTTACTTCTGTCTGATCC
TGGGCCTTTCTTTCATCCCAAATGACAAGGAATGTGGCTCAGAGAAGGGTTTTTCTTTTTTGACCTTTCTTCTCTCAACAGGAACCTGCC
TGAGGACACCCTTCTAGAGCAAGGAATTGACTTTTAGGAGCCGTTCTCCCCACAAGACACCACATGACAAGGGGTATAAGCCCCAGCCCT
GCTCATTCCCACTCACCAGCTGAGGTCTGTCAGGTTTTGAAGGCTTGATTTTGTGGTGGGTTTGGGGCTTAGTTTTCCTTTTTTTCATTT
TGATTTTTGAAAGTGAAGATGATGCCCTAATTCCTGGTAAGGATTTGGGGCATAGTTTTTTGTTTTTTTGAGACGGAGTTTCGCTCTTGT
TGCCCAAGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTTGCCTCAGCCTCCCAAG
TAGCTGGGATGACAGGCGCACACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAAACGGGATTTCACCTTGTTAGGCTGGTCTCG
AACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGGGCA
TTTTTATTTAACAGAACTTCTCTAACCTTCCAACTGCTTCCCACAAACACATTGGCCTCAAGGCTCCTTAGAATCCCAGTTCCAGCTTCC
TAAAATAGACAGTGGGTATCGGGCAGCAGTCACTGGGGCTCAAGGGCAGTGAGCAAGAGAAATGTCTAAAGCTGCTTCTCCCAACACCGT
CCAAAGTCTCCACTGCCTGAGTTTTGTTTCGGCTGGTTTGAACTCATTTCGGGTGTGTGCATTTTTCTTTTGGTACCCATGTGAGACATG
AACAACAGGAGGGAGGGAAAGAGCCCAGGTGGGACGTGGGACAGGCTTAGGGGAAAGAGCTTGTCCTATCTCAGGAACAAAATTATAGGC
TGTGGGCAGAGGGTCTGAAAGGTGGGCTTTGGGGTAGTGCCCAAGCCTGGTCGTGTTGCCAGGAGTGGTGACAAGAAATGCAGCTTACAT
CAAACGAACATGTAGTGCATGCCCACTGCCTGATGGCCAGATGGCCTGTAGGAAGAGCTACCAGGGCTTCCAGACCTGTGGAACGAAGAG
GATGGGGAAAAGGCAGAGGGCACTGAGTGTCCCTTTAAAAACTAACCCACTGAATATTCCGTGTGATCTAGAACAGTGTGGCAGCTTTCA
CAGCACAGGACCGTTCATCGGGGGCCTAAACGTTTCCCTCAGCTCTGTCACCAACTCACTTCTCTCGGCTTCGTTGTCTGTAAATTGGAT
GAAAAGAGCTCTAATGCCTTTCAGGCTCTTAGAAGCCATAGATTTGGACAAGCCCAGCAAGATGGGTGTCCTTCCAGGCCTCTTCCCCTT
TCCTCCATCTCTGGCAACAGTTCTTGGGGTTTGGCAATTGTTTGGATTTTTTTTCTTTCTGCAGTTGTGTGTATGTGTGTTTGTGTGAAG
AAAAACAGACTCTGTCCAGGTAGAAATGGTGAGGAGGGGGAAGAGAATTACATTTCCAGGGTCAGAAACTTGGCAACAGTTTTCCTAGAG
TGACTCAGACACACCACAGTAACAACTCTCGCTGCAATTTTATTTTAATTTGAGAAATAAAGATTTCCTCCAAGCCACATGAGGACTCTG
GCACCCACCCACAAAGCAAGACCTGTATTTATAAGCCGAGGGCTCAGGGAGCCTAACTGCGGGACCCGTCAGGGCCCCGTGACCCATCCC
CGTCCCCACCCCCCCCTCCACCGCTGGGCCCATCAGTGTGTGTTGGGGGGATGCTTGGCAGCTGGGGGTGAGGAGACAACAAACCTCGGG
AACTGGAGCCAGAGCTGCGGCCTGACTGACGCCTTTTGATGCTCACGGGAAATTTCTGCCCAGGATCTCAGCCCCAGGCTGGTTGTTTCT
ACAAATCTCTCTCAAATGTATTATTTTGGTGACAAAAATGAAGGAGCTTTGTAAATTTTTTTTAAAATTATGAATCATATCAAGTAGTTG
TTTACATTTCTTGAAAAAATAGGAACTCGGGCAGCAGAATCAGATTGGCAGAATCTTTAGACTACACAGGCAATAATCAAGTCTGCTGTT

>In-frame_ENST00000446633_ENST00000343067_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=388AA_start in transcript=560_stop in transcript=1726
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKVEKTHIEVTVPTSNGDQTQKLAEKTEDLIRMRKKKRERLDG
ENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVPEPRPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDNANAV
KSEIPTKDVPIVHTETKTITYEAAQTDDNSGDLDPGVLLTAQTITSETPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQ

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000349460_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=1987nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCC
ACATCGAGGTGACAGTACCCACCTCAAATGGTGACCAAACACAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATA
GCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGG
AGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC
CCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCTCAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAG
ACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCT
TGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGA
CACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGC
AGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGATGAGTGAGCTCAGGAACTAACCTACCCCAACT
CTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTAACCTGCCATAGTCAGACTTCAGACTTTCAAGATTATTCTAAA
TCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAGAGATTCTTCTAGATCTCATTGATCCTTTTGAAGAGCTTTTTCTAT
ATTAGGATATCAGAATTGTTCAACTTTTCACTCTATAGACTGTTTTAAGAGTTTTGGGGTTTTTTTAATTGGGTGGTTTGTAACCCCTTC

>In-frame_ENST00000446633_ENST00000349460_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=374AA_start in transcript=560_stop in transcript=1684
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKVEKTHIEVTVPTSNGDQTQKKRERLDGENIYIRHSNLMLED
LDKSQEEIKKHHASISELKKNFMESVPEPRPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDNANAVKSEIPTKDVPIVHT
ETKTITYEAAQTDDNSGDLDPGVLLTAQTITSETPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHPDMSV

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000373800_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=1828nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGAAAAAGAGAGAAA
GACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATG
CCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCAC
CCTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCTCAGATAATG
CCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTGCCCAGACTG
TAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAG
CCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGATGAGTGAGCTC
AGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTAACCTGCCATAGTCAGACTTCA
GACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAGAGATTCTTCTAGATCTCATTGATC
CTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCACTCTATAGACTGTTTTAAGAGTTTTGGGGTTTTTTTAAT

>In-frame_ENST00000446633_ENST00000373800_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=321AA_start in transcript=560_stop in transcript=1525
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELK
KNFMESVPEPRPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDNANAVKSEIPTKDVPIVHTETKTITYEAAQTVKGGISE

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000347529_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=1867nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGATTTAGACAAGA
GTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAAT
GGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGA
CACAAACTGTCACCATCTCAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGA
CCATCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGA
CCCCAAGCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAG
GAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGG
TCGTCCACCAGGAGACCGAGATTGCTGATGAGTGAGCTCAGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGC
AAAATGATAAAGAAGCTAACCTGCCATAGTCAGACTTCAGACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTG
GGAGTTTATACCAAGAGATTCTTCTAGATCTCATTGATCCTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCA

>In-frame_ENST00000446633_ENST00000347529_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=334AA_start in transcript=560_stop in transcript=1564
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKDLDKSQEEIKKHHASISELKKNFMESVPEPRPSEWDKRLST
HSPFRTLNINGQIPTGEGPPLVKTQTVTISDNANAVKSEIPTKDVPIVHTETKTITYEAAQTDDNSGDLDPGVLLTAQTITSETPSSTTT

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000373798_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=4956nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCC
ACATCGAGGTGACAGTACCCACCTCAAATGGTGACCAAACACAGAAGCTTGCAGAAAAAACTGAAGATCTGATAAGAATGAGGAAGAAAA
AGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAA
AACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCA
CTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCT
CAGATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCCACACTGAGACCAAGACCATCACTTATGAGGCTG
CCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACTATCACATCTGAGACCCCAAGCAGCACCACCA
CAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACC
ATGATCAGGTCCTTGTACAAGCCATCAAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCG
AGATTGCTGATGAGTGAGCTCAGGAACTAACCTACCCCAACTCTGCCCTTCTCCCATCCAAGAGAAACCAGCAAAATGATAAAGAAGCTA
ACCTGCCATAGTCAGACTTCAGACTTTCAAGATTATTCTAAATCACCAGAAAATTAATTTCAGTTTCTATTGGGAGTTTATACCAAGAGA
TTCTTCTAGATCTCATTGATCCTTTTGAAGAGCTTTTTCTATATTAGGATATCAGAATTGTTCAACTTTTCACTCTATAGACTGTTTTAA
GAGTTTTGGGGTTTTTTTAATTGGGTGGTTTGTAACCCCTTCAGCCTAGCCTCTCTGCCCATTTATTTCCAACCCCAACAGACACTGACA
GGGTCCATGGAATTCTTCGGGAAATCCTCCAAGGACTCTTGTCAGCTGTGTTGGAAGCCAAAGCCAGCTTAGTGGGACTTCCGCGTCTCT
CCCTAGTCTTATCCCCTTTGGATGATGGCAGAAACTTCATGAACCAGCCCTTTCTCAGAGCCAGTGATGTGAGTGTATCAGAATGCCAGG
GAGGGCACCAGCCCTGATCCACAGACCTCGGAAAGATGCCCCTGTTCCTTTGTTGCGGGTGGTTTTGGTAAGGCAGAGCCCTCTGCTGAG
AATGTAGTATTGTTTTTCCCCTCTCCCTCCTGCTTTCTTTTTGGAGCTTCTTTGGGTCAAAGACATGGAAGTTGCTTCAGATATCTGATA
CTGTGAATGTTTGAACATATCCGTGGCCTTCACCTCTCCAGCTACCCTTTTACCTCATCAGAAGCAGTGGCTCAGCTAAGTGCTCCCCCT
AGCTCCCATCTCAGGAGACCAAATCTCACAGAAAAATAGGCACTTTGGGCCAAAAGCTCTAATGGAACATTTTTAGTGGTGATTTGGGGA
AGGAAAGTTAATGAGGTTTTTAAAATAAGGTTTTCTAGTTTTGAGAGTGTGCACTTCACACAGGGGAATGGGGTTACTTCTGTCTGATCC
TGGGCCTTTCTTTCATCCCAAATGACAAGGAATGTGGCTCAGAGAAGGGTTTTTCTTTTTTGACCTTTCTTCTCTCAACAGGAACCTGCC
TGAGGACACCCTTCTAGAGCAAGGAATTGACTTTTAGGAGCCGTTCTCCCCACAAGACACCACATGACAAGGGGTATAAGCCCCAGCCCT
GCTCATTCCCACTCACCAGCTGAGGTCTGTCAGGTTTTGAAGGCTTGATTTTGTGGTGGGTTTGGGGCTTAGTTTTCCTTTTTTTCATTT
TGATTTTTGAAAGTGAAGATGATGCCCTAATTCCTGGTAAGGATTTGGGGCATAGTTTTTTGTTTTTTTGAGACGGAGTTTCGCTCTTGT
TGCCCAAGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAGTTCTCTTGCCTCAGCCTCCCAAG
TAGCTGGGATGACAGGCGCACACCACCACGCCCAGCAAATTTTTTGTATTTTTAGTAGAAACGGGATTTCACCTTGTTAGGCTGGTCTCG
AACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGGGCA
TTTTTATTTAACAGAACTTCTCTAACCTTCCAACTGCTTCCCACAAACACATTGGCCTCAAGGCTCCTTAGAATCCCAGTTCCAGCTTCC
TAAAATAGACAGTGGGTATCGGGCAGCAGTCACTGGGGCTCAAGGGCAGTGAGCAAGAGAAATGTCTAAAGCTGCTTCTCCCAACACCGT
CCAAAGTCTCCACTGCCTGAGTTTTGTTTCGGCTGGTTTGAACTCATTTCGGGTGTGTGCATTTTTCTTTTGGTACCCATGTGAGACATG
AACAACAGGAGGGAGGGAAAGAGCCCAGGTGGGACGTGGGACAGGCTTAGGGGAAAGAGCTTGTCCTATCTCAGGAACAAAATTATAGGC
TGTGGGCAGAGGGTCTGAAAGGTGGGCTTTGGGGTAGTGCCCAAGCCTGGTCGTGTTGCCAGGAGTGGTGACAAGAAATGCAGCTTACAT
CAAACGAACATGTAGTGCATGCCCACTGCCTGATGGCCAGATGGCCTGTAGGAAGAGCTACCAGGGCTTCCAGACCTGTGGAACGAAGAG
GATGGGGAAAAGGCAGAGGGCACTGAGTGTCCCTTTAAAAACTAACCCACTGAATATTCCGTGTGATCTAGAACAGTGTGGCAGCTTTCA
CAGCACAGGACCGTTCATCGGGGGCCTAAACGTTTCCCTCAGCTCTGTCACCAACTCACTTCTCTCGGCTTCGTTGTCTGTAAATTGGAT
GAAAAGAGCTCTAATGCCTTTCAGGCTCTTAGAAGCCATAGATTTGGACAAGCCCAGCAAGATGGGTGTCCTTCCAGGCCTCTTCCCCTT
TCCTCCATCTCTGGCAACAGTTCTTGGGGTTTGGCAATTGTTTGGATTTTTTTTCTTTCTGCAGTTGTGTGTATGTGTGTTTGTGTGAAG
AAAAACAGACTCTGTCCAGGTAGAAATGGTGAGGAGGGGGAAGAGAATTACATTTCCAGGGTCAGAAACTTGGCAACAGTTTTCCTAGAG
TGACTCAGACACACCACAGTAACAACTCTCGCTGCAATTTTATTTTAATTTGAGAAATAAAGATTTCCTCCAAGCCACATGAGGACTCTG
GCACCCACCCACAAAGCAAGACCTGTATTTATAAGCCGAGGGCTCAGGGAGCCTAACTGCGGGACCCGTCAGGGCCCCGTGACCCATCCC
CGTCCCCACCCCCCCCTCCACCGCTGGGCCCATCAGTGTGTGTTGGGGGGATGCTTGGCAGCTGGGGGTGAGGAGACAACAAACCTCGGG
AACTGGAGCCAGAGCTGCGGCCTGACTGACGCCTTTTGATGCTCACGGGAAATTTCTGCCCAGGATCTCAGCCCCAGGCTGGTTGTTTCT
ACAAATCTCTCTCAAATGTATTATTTTGGTGACAAAAATGAAGGAGCTTTGTAAATTTTTTTTAAAATTATGAATCATATCAAGTAGTTG
TTTACATTTCTTGAAAAAATAGGAACTCGGGCAGCAGAATCAGATTGGCAGAATCTTTAGACTACACAGGCAATAATCAAGTCTGCTGTT
TTGGCCTTTCGTAGTAGAAGTGGTTGTAGTGTTTAGATATCTGTTTGGTCTTGCTTCTTGTATTGCATTTTTTTCAATAAACAACAACAA

>In-frame_ENST00000446633_ENST00000373798_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=388AA_start in transcript=560_stop in transcript=1726
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKVEKTHIEVTVPTSNGDQTQKLAEKTEDLIRMRKKKRERLDG
ENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVPEPRPSEWDKRLSTHSPFRTLNINGQIPTGEGPPLVKTQTVTISDNANAV
KSEIPTKDVPIVHTETKTITYEAAQTDDNSGDLDPGVLLTAQTITSETPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQ

--------------------------------------------------------------
>In-frame_ENST00000446633_ENST00000373797_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(transcript)=1337nt_BP=595nt
AATTGCGTGGCGCCTGAGAGCGGCAGCGCGGTCAGTGGCGGCGCTGAAGAGACCGGTTGCCGCCATGATAGAACAGCAGAAGCGTAAGGG
CCCAGAGTTGCCGCTGGTTCCAGTCAAGCGGCAGCGGCATGAGTTGCTGTTGGGAGCGGGGTCTGGCCCAGGAGCCGGGCAGCAGCAGGC
GACGCCGGGAGCCTTGCTGCAAGCGGGACCTCCAAGATGTTCCTCCCTTCAAGCCCCAATCATGCTGCTCTCTGGACATGAAGGGGAAGT
CTACTGCTGCAAGTTCCACCCCAACGGATCCACCTTAGCATCTGCAGGATTTGACCGACTGATATTACTGTGGAATGTCTATGGTGACTG
TGATAACTATGCCACACTGAAGGGACACAGTGGAGCAGTGATGGAATTGCATTACAACACAGATGGCAGTATGCTTTTCTCAGCATCCAC
AGATAAAACCGTGGCTGTGTGGGATAGTGAAACAGGTGAGAGGGTTAAAAGGCTAAAGGGACATACTTCCTTTGTGAATTCCTGTTATCC
AGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAGATTGACATCTACAGACACCATTCCCAAAAGCAAAT
TTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGGCAAGCTAGTGCTCTAATTGACAGGCCTGCCCCAC
ACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCTCGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTT
CTGCACCTGCCATTACTCAGGGTCAGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGG
AAACAGTGAAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGTGGAAAAAACCC
ACATCGAGGTGACAGTACCCACCTCAAATGGTGACCAAACACAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATA
GCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAACTTCATGG
AGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAACTCTTAACATCAATGGGCAAATCC

>In-frame_ENST00000446633_ENST00000373797_TCGA-DQ-7591-01A_SNRNP40_chr1_31762101_-_EPB41_chr1_29365766_length(amino acids)=244AA_start in transcript=560_stop in transcript=1294
MSALAVTMAQLRLTSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQ
GQVAEGGVLDASAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKVEKTHIEVTVPTSNGDQTQKKRERLDGENIYIRHSNLMLED

--------------------------------------------------------------

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Fusion Gene PPI Analysis for SNRNP40-EPB41


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SNRNP40-EPB41


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SNRNP40-EPB41


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneEPB41C0013902Elliptocytosis, Hereditary3GENOMICS_ENGLAND;ORPHANET
TgeneEPB41C0427480Elliptocytosis found2GENOMICS_ENGLAND
TgeneEPB41C2678497Elliptocytosis 12CTD_human;GENOMICS_ENGLAND
TgeneEPB41C0025202melanoma1CTD_human