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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SNX19-USP28 (FusionGDB2 ID:84332) |
Fusion Gene Summary for SNX19-USP28 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SNX19-USP28 | Fusion gene ID: 84332 | Hgene | Tgene | Gene symbol | SNX19 | USP28 | Gene ID | 399979 | 57646 |
Gene name | sorting nexin 19 | ubiquitin specific peptidase 28 | |
Synonyms | CHET8 | - | |
Cytomap | 11q24.3-q25 | 11q23.2 | |
Type of gene | protein-coding | protein-coding | |
Description | sorting nexin-19 | ubiquitin carboxyl-terminal hydrolase 28deubiquitinating enzyme 28ubiquitin carboxyl-terminal hydrolase 28 variant 1ubiquitin thioesterase 28ubiquitin thiolesterase 28ubiquitin-specific-processing protease 28 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000265909, ENST00000534726, ENST00000545537, ENST00000426933, ENST00000533318, ENST00000530356, ENST00000539184, ENST00000528555, ENST00000533214, | ENST00000003302, ENST00000260188, ENST00000544967, ENST00000545540, ENST00000537706, ENST00000542033, | |
Fusion gene scores | * DoF score | 6 X 7 X 3=126 | 8 X 8 X 6=384 |
# samples | 8 | 9 | |
** MAII score | log2(8/126*10)=-0.655351828612554 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/384*10)=-2.09310940439148 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SNX19 [Title/Abstract] AND USP28 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SNX19(130784161)-USP28(113675768), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | USP28 | GO:0006974 | cellular response to DNA damage stimulus | 17873522 |
Tgene | USP28 | GO:0010212 | response to ionizing radiation | 16901786 |
Tgene | USP28 | GO:0016579 | protein deubiquitination | 16901786|17558397|18662541 |
Tgene | USP28 | GO:0034644 | cellular response to UV | 17873522 |
Tgene | USP28 | GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | 16901786 |
Fusion gene breakpoints across SNX19 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across USP28 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-HC-7232-01A | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
ChimerDB4 | PRAD | TCGA-HC-7232 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
ChimerDB4 | PRAD | TCGA-HC-7232 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
ChimerDB4 | PRAD | TCGA-HC-7232-01A | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
ChimerDB4 | PRAD | TCGA-HC-7232-01A | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
Top |
Fusion Gene ORF analysis for SNX19-USP28 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000265909 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000265909 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000265909 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000265909 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
5CDS-intron | ENST00000265909 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
5CDS-intron | ENST00000265909 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000534726 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000534726 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000545537 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000545537 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000426933 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000426933 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533318 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533318 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533318 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533318 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000533318 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000533318 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000530356 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000530356 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000530356 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000530356 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000530356 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000530356 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000539184 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000539184 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000539184 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000539184 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000539184 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000539184 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000528555 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000528555 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000528555 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000528555 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000528555 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000528555 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000533214 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000533214 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000533214 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000533214 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
5CDS-intron | ENST00000533214 | ENST00000537706 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
5CDS-intron | ENST00000533214 | ENST00000542033 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000265909 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000265909 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000265909 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000265909 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000265909 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000265909 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000534726 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000534726 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000534726 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000545537 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000545537 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000545537 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000426933 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000426933 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000426933 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000533318 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000533318 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000533318 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000533318 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000533318 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000533318 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000530356 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000530356 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000530356 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000530356 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000530356 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000530356 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000539184 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000539184 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000539184 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000539184 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000539184 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000539184 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000528555 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000528555 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000528555 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-3CDS | ENST00000528555 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000528555 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
5UTR-intron | ENST00000528555 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533214 | ENST00000003302 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533214 | ENST00000260188 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533214 | ENST00000544967 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-3CDS | ENST00000533214 | ENST00000545540 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000533214 | ENST00000537706 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
intron-intron | ENST00000533214 | ENST00000542033 | SNX19 | chr11 | 130786175 | - | USP28 | chr11 | 113675768 | - |
In-frame | ENST00000265909 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000265909 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000265909 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000265909 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
5CDS-intron | ENST00000265909 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
5CDS-intron | ENST00000265909 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000534726 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000534726 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000534726 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000534726 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000534726 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000534726 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000545537 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000545537 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000545537 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000545537 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000545537 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000545537 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000426933 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000426933 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000426933 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000426933 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000426933 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000426933 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000533318 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000533318 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000533318 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000533318 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000533318 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000533318 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000530356 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000530356 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000530356 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000530356 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000530356 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000530356 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000539184 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000539184 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000539184 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000539184 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000539184 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000539184 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000528555 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000528555 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000528555 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-3CDS | ENST00000528555 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000528555 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
intron-intron | ENST00000528555 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000533214 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000533214 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000533214 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
In-frame | ENST00000533214 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
5CDS-intron | ENST00000533214 | ENST00000537706 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
5CDS-intron | ENST00000533214 | ENST00000542033 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000265909 | SNX19 | chr11 | 130784161 | - | ENST00000003302 | USP28 | chr11 | 113675768 | - | 4444 | 2244 | 528 | 3077 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784161 | - | ENST00000260188 | USP28 | chr11 | 113675768 | - | 4442 | 2244 | 528 | 3077 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784161 | - | ENST00000544967 | USP28 | chr11 | 113675768 | - | 4226 | 2244 | 528 | 3077 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784161 | - | ENST00000545540 | USP28 | chr11 | 113675768 | - | 3513 | 2244 | 528 | 3077 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784161 | - | ENST00000003302 | USP28 | chr11 | 113675768 | - | 4384 | 2184 | 468 | 3017 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784161 | - | ENST00000260188 | USP28 | chr11 | 113675768 | - | 4382 | 2184 | 468 | 3017 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784161 | - | ENST00000544967 | USP28 | chr11 | 113675768 | - | 4166 | 2184 | 468 | 3017 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784161 | - | ENST00000545540 | USP28 | chr11 | 113675768 | - | 3453 | 2184 | 468 | 3017 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784160 | - | ENST00000003302 | USP28 | chr11 | 113675767 | - | 4444 | 2244 | 528 | 3077 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784160 | - | ENST00000260188 | USP28 | chr11 | 113675767 | - | 4442 | 2244 | 528 | 3077 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784160 | - | ENST00000544967 | USP28 | chr11 | 113675767 | - | 4226 | 2244 | 528 | 3077 | 849 |
ENST00000265909 | SNX19 | chr11 | 130784160 | - | ENST00000545540 | USP28 | chr11 | 113675767 | - | 3513 | 2244 | 528 | 3077 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784160 | - | ENST00000003302 | USP28 | chr11 | 113675767 | - | 4384 | 2184 | 468 | 3017 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784160 | - | ENST00000260188 | USP28 | chr11 | 113675767 | - | 4382 | 2184 | 468 | 3017 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784160 | - | ENST00000544967 | USP28 | chr11 | 113675767 | - | 4166 | 2184 | 468 | 3017 | 849 |
ENST00000533214 | SNX19 | chr11 | 130784160 | - | ENST00000545540 | USP28 | chr11 | 113675767 | - | 3453 | 2184 | 468 | 3017 | 849 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000265909 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.002799376 | 0.9972006 |
ENST00000265909 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.002841312 | 0.99715865 |
ENST00000265909 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.004134648 | 0.99586535 |
ENST00000265909 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.006246899 | 0.99375314 |
ENST00000533214 | ENST00000003302 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.002682798 | 0.99731725 |
ENST00000533214 | ENST00000260188 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.00272633 | 0.9972736 |
ENST00000533214 | ENST00000544967 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.003911316 | 0.99608874 |
ENST00000533214 | ENST00000545540 | SNX19 | chr11 | 130784161 | - | USP28 | chr11 | 113675768 | - | 0.006087456 | 0.9939126 |
ENST00000265909 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.002799376 | 0.9972006 |
ENST00000265909 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.002841312 | 0.99715865 |
ENST00000265909 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.004134648 | 0.99586535 |
ENST00000265909 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.006246899 | 0.99375314 |
ENST00000533214 | ENST00000003302 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.002682798 | 0.99731725 |
ENST00000533214 | ENST00000260188 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.00272633 | 0.9972736 |
ENST00000533214 | ENST00000544967 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.003911316 | 0.99608874 |
ENST00000533214 | ENST00000545540 | SNX19 | chr11 | 130784160 | - | USP28 | chr11 | 113675767 | - | 0.006087456 | 0.9939126 |
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Fusion Genomic Features for SNX19-USP28 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SNX19-USP28 |
Go to FGviewer for the breakpoints of chr11:130784161-chr11:113675768 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SNX19 | chr11:130784160 | chr11:113675767 | ENST00000265909 | - | 1 | 11 | 95_272 | 558.0 | 993.0 | Domain | PXA |
Hgene | SNX19 | chr11:130784161 | chr11:113675768 | ENST00000265909 | - | 1 | 11 | 95_272 | 558.0 | 993.0 | Domain | PXA |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SNX19 | chr11:130784160 | chr11:113675767 | ENST00000265909 | - | 1 | 11 | 533_663 | 558.0 | 993.0 | Domain | PX |
Hgene | SNX19 | chr11:130784161 | chr11:113675768 | ENST00000265909 | - | 1 | 11 | 533_663 | 558.0 | 993.0 | Domain | PX |
Tgene | USP28 | chr11:130784160 | chr11:113675767 | ENST00000003302 | 18 | 25 | 162_650 | 800.0 | 1078.0 | Domain | Note=USP | |
Tgene | USP28 | chr11:130784160 | chr11:113675767 | ENST00000003302 | 18 | 25 | 97_116 | 800.0 | 1078.0 | Domain | UIM | |
Tgene | USP28 | chr11:130784160 | chr11:113675767 | ENST00000260188 | 17 | 24 | 162_650 | 768.0 | 1046.0 | Domain | Note=USP | |
Tgene | USP28 | chr11:130784160 | chr11:113675767 | ENST00000260188 | 17 | 24 | 97_116 | 768.0 | 1046.0 | Domain | UIM | |
Tgene | USP28 | chr11:130784161 | chr11:113675768 | ENST00000003302 | 18 | 25 | 162_650 | 800.0 | 1078.0 | Domain | Note=USP | |
Tgene | USP28 | chr11:130784161 | chr11:113675768 | ENST00000003302 | 18 | 25 | 97_116 | 800.0 | 1078.0 | Domain | UIM | |
Tgene | USP28 | chr11:130784161 | chr11:113675768 | ENST00000260188 | 17 | 24 | 162_650 | 768.0 | 1046.0 | Domain | Note=USP | |
Tgene | USP28 | chr11:130784161 | chr11:113675768 | ENST00000260188 | 17 | 24 | 97_116 | 768.0 | 1046.0 | Domain | UIM |
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Fusion Gene Sequence for SNX19-USP28 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000265909_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=4444nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA CTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGTTGCTGATGAACTGCACCCTTTTACATGTGG GTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCTCCTTTCTTTTCTATCTTTAAACCAGAAAAC CTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCATTGTGTAACTTGACTGAAGATCATCCATTAA TAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAATAGGGCTACTGCTGGCCCAAAGACCATTTAG GTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAGGCTGGCGTTCAGTGGTGCAATCTCAGCTCA CTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGGAATTACGGGCATGCACCACCACACCTGGCT AATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACTCCTGGCCTCAAGTGATCTATCTGCCTCCCT CAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCTTAAAAGTAAGGGATGTGGGTTTGTACAAAA AAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGTAGAGAAAAATACTTCCCATTGATCATTTTT AAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGAAAGGGAAAAAAATTGATACAACTATGCAGA >In-frame_ENST00000265909_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=4442nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA CTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGTTGCTGATGAACTGCACCCTTTTACATGTGG GTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCTCCTTTCTTTTCTATCTTTAAACCAGAAAAC CTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCATTGTGTAACTTGACTGAAGATCATCCATTAA TAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAATAGGGCTACTGCTGGCCCAAAGACCATTTAG GTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAGGCTGGCGTTCAGTGGTGCAATCTCAGCTCA CTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGGAATTACGGGCATGCACCACCACACCTGGCT AATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACTCCTGGCCTCAAGTGATCTATCTGCCTCCCT CAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCTTAAAAGTAAGGGATGTGGGTTTGTACAAAA AAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGTAGAGAAAAATACTTCCCATTGATCATTTTT AAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGAAAGGGAAAAAAATTGATACAACTATGCAGA >In-frame_ENST00000265909_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=4226nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA CTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGTTGCTGATGAACTGCACCCTTTTACATGTGG GTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCTCCTTTCTTTTCTATCTTTAAACCAGAAAAC CTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCATTGTGTAACTTGACTGAAGATCATCCATTAA TAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAATAGGGCTACTGCTGGCCCAAAGACCATTTAG GTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAGGCTGGCGTTCAGTGGTGCAATCTCAGCTCA CTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGGAATTACGGGCATGCACCACCACACCTGGCT AATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACTCCTGGCCTCAAGTGATCTATCTGCCTCCCT >In-frame_ENST00000265909_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=3513nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA >In-frame_ENST00000265909_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=4384nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT CAAATACAGATGACATTTAAAAATTCTTAACTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGT TGCTGATGAACTGCACCCTTTTACATGTGGGTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCT CCTTTCTTTTCTATCTTTAAACCAGAAAACCTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCAT TGTGTAACTTGACTGAAGATCATCCATTAATAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAAT AGGGCTACTGCTGGCCCAAAGACCATTTAGGTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAG GCTGGCGTTCAGTGGTGCAATCTCAGCTCACTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGG AATTACGGGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACT CCTGGCCTCAAGTGATCTATCTGCCTCCCTCAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCT TAAAAGTAAGGGATGTGGGTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGT AGAGAAAAATACTTCCCATTGATCATTTTTAAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGA >In-frame_ENST00000533214_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=4382nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT CAAATACAGATGACATTTAAAAATTCTTAACTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGT TGCTGATGAACTGCACCCTTTTACATGTGGGTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCT CCTTTCTTTTCTATCTTTAAACCAGAAAACCTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCAT TGTGTAACTTGACTGAAGATCATCCATTAATAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAAT AGGGCTACTGCTGGCCCAAAGACCATTTAGGTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAG GCTGGCGTTCAGTGGTGCAATCTCAGCTCACTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGG AATTACGGGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACT CCTGGCCTCAAGTGATCTATCTGCCTCCCTCAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCT TAAAAGTAAGGGATGTGGGTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGT AGAGAAAAATACTTCCCATTGATCATTTTTAAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGA >In-frame_ENST00000533214_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=4166nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT CAAATACAGATGACATTTAAAAATTCTTAACTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGT TGCTGATGAACTGCACCCTTTTACATGTGGGTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCT CCTTTCTTTTCTATCTTTAAACCAGAAAACCTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCAT TGTGTAACTTGACTGAAGATCATCCATTAATAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAAT AGGGCTACTGCTGGCCCAAAGACCATTTAGGTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAG GCTGGCGTTCAGTGGTGCAATCTCAGCTCACTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGG AATTACGGGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACT CCTGGCCTCAAGTGATCTATCTGCCTCCCTCAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCT >In-frame_ENST00000533214_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(transcript)=3453nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT >In-frame_ENST00000533214_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784161_-_USP28_chr11_113675768_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=4444nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA CTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGTTGCTGATGAACTGCACCCTTTTACATGTGG GTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCTCCTTTCTTTTCTATCTTTAAACCAGAAAAC CTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCATTGTGTAACTTGACTGAAGATCATCCATTAA TAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAATAGGGCTACTGCTGGCCCAAAGACCATTTAG GTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAGGCTGGCGTTCAGTGGTGCAATCTCAGCTCA CTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGGAATTACGGGCATGCACCACCACACCTGGCT AATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACTCCTGGCCTCAAGTGATCTATCTGCCTCCCT CAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCTTAAAAGTAAGGGATGTGGGTTTGTACAAAA AAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGTAGAGAAAAATACTTCCCATTGATCATTTTT AAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGAAAGGGAAAAAAATTGATACAACTATGCAGA >In-frame_ENST00000265909_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=4442nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA CTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGTTGCTGATGAACTGCACCCTTTTACATGTGG GTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCTCCTTTCTTTTCTATCTTTAAACCAGAAAAC CTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCATTGTGTAACTTGACTGAAGATCATCCATTAA TAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAATAGGGCTACTGCTGGCCCAAAGACCATTTAG GTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAGGCTGGCGTTCAGTGGTGCAATCTCAGCTCA CTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGGAATTACGGGCATGCACCACCACACCTGGCT AATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACTCCTGGCCTCAAGTGATCTATCTGCCTCCCT CAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCTTAAAAGTAAGGGATGTGGGTTTGTACAAAA AAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGTAGAGAAAAATACTTCCCATTGATCATTTTT AAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGAAAGGGAAAAAAATTGATACAACTATGCAGA >In-frame_ENST00000265909_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=4226nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA CTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGTTGCTGATGAACTGCACCCTTTTACATGTGG GTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCTCCTTTCTTTTCTATCTTTAAACCAGAAAAC CTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCATTGTGTAACTTGACTGAAGATCATCCATTAA TAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAATAGGGCTACTGCTGGCCCAAAGACCATTTAG GTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAGGCTGGCGTTCAGTGGTGCAATCTCAGCTCA CTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGGAATTACGGGCATGCACCACCACACCTGGCT AATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACTCCTGGCCTCAAGTGATCTATCTGCCTCCCT >In-frame_ENST00000265909_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000265909_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=3513nt_BP=2244nt ATGCCTCGCTCCCGTCGACGTCGACCCGGAAGCTGTCGCCGGCGGCCGGCCGGCGGTCAGCCTTCACACAGGCCCGGCTGCGGAGCGCAG TCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCACTTCAGGTCGGGGCTGAGTGTGGGCGCGCGG TTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCCGTGGGCCCCAGGGCCTTGCAGCGCCCGCCC CGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAAAGCCACACCTCAGCTGGAAGGGGCGAGTTG GAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTGCCTGTAGGACTTTGAGGGCCTGGAGCCCCG GTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCCTAACTCTGAAGTAAAATCTTGAGGGCTGTC ATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTC AATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTG CTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA CGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGGGAGATCAACCGCACCATCCAGATGATTATT CGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAGCCATGAAAGGGTTGGTCCAG GAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACTCTCTGCGGTTGTCACCTGCAGAGCTACATT CAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCT GCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAG ACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATC CACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCAGTGCCGACATCT CTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAGAAAAGTAGGA AACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGGAGTCTCCGCTGTCTGAACTG GGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGATGCCCTGTGTGCCCTAGAGAGTTCCCAGGCT CTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACA CTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGATGTTACCGCCTCTGTTACAGCTTTGCTGGAG GGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCA GTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATC CAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGGCATTC CATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGATCCTCGACTTCAGCATGTCCTTGTCTACTTT TTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGATAAAAATCTTAGCTATGATGAAAGATCAATC AGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATGGAAGAGTACAAGAAGTGGCATGAAGATTAT AGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTA TATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGC CTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTG ATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCT TACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTC TTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCA ACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTG CTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCTGCATGTGTAAAGAAGGATTGAAAATAAAAT TGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGTATTAAGGTGTTGAATTACGCCAGAAGACCT GAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAATTATCCTTCAGGCATAAATATTTTTGACAG CAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATACAGATGACATTTAAAAATTCTTAA >In-frame_ENST00000265909_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=528_stop in transcript=3077 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=4384nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT CAAATACAGATGACATTTAAAAATTCTTAACTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGT TGCTGATGAACTGCACCCTTTTACATGTGGGTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCT CCTTTCTTTTCTATCTTTAAACCAGAAAACCTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCAT TGTGTAACTTGACTGAAGATCATCCATTAATAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAAT AGGGCTACTGCTGGCCCAAAGACCATTTAGGTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAG GCTGGCGTTCAGTGGTGCAATCTCAGCTCACTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGG AATTACGGGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACT CCTGGCCTCAAGTGATCTATCTGCCTCCCTCAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCT TAAAAGTAAGGGATGTGGGTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGT AGAGAAAAATACTTCCCATTGATCATTTTTAAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGA >In-frame_ENST00000533214_ENST00000003302_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=4382nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT CAAATACAGATGACATTTAAAAATTCTTAACTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGT TGCTGATGAACTGCACCCTTTTACATGTGGGTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCT CCTTTCTTTTCTATCTTTAAACCAGAAAACCTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCAT TGTGTAACTTGACTGAAGATCATCCATTAATAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAAT AGGGCTACTGCTGGCCCAAAGACCATTTAGGTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAG GCTGGCGTTCAGTGGTGCAATCTCAGCTCACTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGG AATTACGGGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACT CCTGGCCTCAAGTGATCTATCTGCCTCCCTCAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCT TAAAAGTAAGGGATGTGGGTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAACCAGCATACATATGCAAAACTATATATATATGTATATGT AGAGAAAAATACTTCCCATTGATCATTTTTAAAAGGCTTCTGATTGGATATTGTGTTTTAACCAAATTTTAAAGATTAATGGAATCATGA >In-frame_ENST00000533214_ENST00000260188_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=4166nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT CAAATACAGATGACATTTAAAAATTCTTAACTACAAGAGATTAGAAATATAAACCTTGCCTGGCTCTTGCCAGGAGATAACAAAATGGGT TGCTGATGAACTGCACCCTTTTACATGTGGGTAGAATATAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCTGTCTCTCT CCTTTCTTTTCTATCTTTAAACCAGAAAACCTCATACTCAGTCCTCAGTGAAAGAAAGTAAAGTATTAAGGACTTTAGACAGAAGAGCAT TGTGTAACTTGACTGAAGATCATCCATTAATAGTTATTAGGCATTTAGGTAAAATTTTCTAATACCTAAAAATTGTCAAAAACAGTCAAT AGGGCTACTGCTGGCCCAAAGACCATTTAGGTCCACCTCCTCTTTTTTGCTCTTTTTTTTTTTCTGTGACAGTTTCACTGTGTCGCCCAG GCTGGCGTTCAGTGGTGCAATCTCAGCTCACTGCAAACTCTGTCTCCTGGGCTCAAGTGATTCTCGTGCCTCAGCCTCCCGAATAGCTGG AATTACGGGCATGCACCACCACACCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATATTGGCCAGGCTGATCTCTAACT CCTGGCCTCAAGTGATCTATCTGCCTCCCTCAGCCTCCCAAAGTCTGGGATTGCAGACAAGTCATCGTACCCGGCCTTCTTTTTTGCCCT >In-frame_ENST00000533214_ENST00000544967_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- >In-frame_ENST00000533214_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(transcript)=3453nt_BP=2184nt CCTTCACACAGGCCCGGCTGCGGAGCGCAGTCGCCCAGGTTTACGGCGGCAGAGGGCCGAGGCTCCCGGAGAGGACCGCGATGAGTCCAC TTCAGGTCGGGGCTGAGTGTGGGCGCGCGGTTCCCGGCGGCGTGTGACCCAGTCTTCGCCGGCCGCTGCCCGCTGCGTGTGTAAGTGTCC GTGGGCCCCAGGGCCTTGCAGCGCCCGCCCCGAGGCCCCGAAGAGGCCTTCCGCCTGGGGCAGTGTGAAGGCCACAGAGTTTTCCTCCAA AGCCACACCTCAGCTGGAAGGGGCGAGTTGGAGGGCTCTGTTAGTGGTAGCCATGGGGAGACGCGGAGCTGCAGCTGTCGCTTTGCAGTG CCTGTAGGACTTTGAGGGCCTGGAGCCCCGGTTCCCTGAACAGCACCCAGATCGCCCCATATCTGAGACACAGTTCATGCCCCCCTTCCC TAACTCTGAAGTAAAATCTTGAGGGCTGTCATCTGGGGAAGCCACCTTGTCCGTTCAGCCATGAAGACAGAAACAGTGCCACCGTTCCAG GAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCGGAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTG GTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTCTGTCGGCATTGCTAGTGGTGCTGGGAGGATGGCTGGGCTCCAGCCTCGCT GGAGTGGCTTCAGGTCGACTGCATCTGGAACGCTTCATCCCGTTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACGG GAGATCAACCGCACCATCCAGATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAA ATGGAGGCAGCCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTGTTGCCCAGAGTGTTCTGACT CTCTGCGGTTGTCACCTGCAGAGCTACATTCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCACCTCTGGGAG GCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTGGCGTTGTGAATTTGTTGCTT CAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTAGTGGTCGAACTCATCACATGCAATGTAATCTTACCACTG ATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTATCTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGT GCCCCCGAACAGCCCTCAGTGCCGACATCTCTGCCACTGATTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCC CCAGTATTCCTAAGTTACAGTGAGCCAGAGGGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTG GGTGGGATGTGTGAAGAAAGAAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATGTTCGAGGTCCCCTGTTCTTATGTGAAGAC TCAGAGCTGGAGTCTCCGCTGTCTGAACTGGGCAAAGAAACCATCATGCTCATGACTCCAGGCAGCTTTCTCTCTGACAGGATTCAGGAT GCCCTGTGTGCCCTAGAGAGTTCCCAGGCTCTGGAACCCAAAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGGTCCAGGGACA GAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCATATTGACACAGCAGACAAGGAGATAGAACAAGGAGAT GTTACCGCCTCTGTTACAGCTTTGCTGGAGGGGCCAGAAAAGACCTGCCCCTCACGGCCGTCATGCTTAGAGAAGGATCTCACCAATGAT GTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCCACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCC CTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTCGTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCAC CCATACACACTCTATACTGTGAAGGCATTCCATGAAGAATACTCCAGGCTCTATCAGCTTGCCAAAGAGACCCCCACCTCTCACAGTGAT CCTCGACTTCAGCATGTCCTTGTCTACTTTTTCCAAAATGAAGCACCCAAAAGGGTAGTAGAACGAACCCTTCTGGAACAGTTTGCAGAT AAAAATCTTAGCTATGATGAAAGATCAATCAGCATTATGAAGGTGGCTCAAGCGAAACTGAAGGAAATTGGTCCAGATGACATGAATATG GAAGAGTACAAGAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGA AAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAA TCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTA ACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCC ATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGA CTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACAATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCA GCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTG CCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACCCCAACCATGCT GCATGTGTAAAGAAGGATTGAAAATAAAATTGCACTTTTTAGGTACAAAATCATAAAAGCTGTTTCACTAGAAAAGGCAGAAAGCAGTGT ATTAAGGTGTTGAATTACGCCAGAAGACCTGAAATGCCTTGTACCTACAACAATGCTTAGGCTTTTCTAAGCCTCTTGCCACTTTTAAAA TTATCCTTCAGGCATAAATATTTTTGACAGCAGAATAGAAGAATGATTCATGAGAACCTGAACCAGATGAACAGCTACTAGTTATTTTAT >In-frame_ENST00000533214_ENST00000545540_TCGA-HC-7232-01A_SNX19_chr11_130784160_-_USP28_chr11_113675767_length(amino acids)=849AA_start in transcript=468_stop in transcript=3017 MRAVIWGSHLVRSAMKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGR LHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHL QSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSD PDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEE RKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGL PVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDG PVIIQNLRITGTITAREHSGTGFHPYTLYTVKAFHEEYSRLYQLAKETPTSHSDPRLQHVLVYFFQNEAPKRVVERTLLEQFADKNLSYD ERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQKGKYQEALSYLVYAYQSNAALLMKGPRRGVKESVIALY RRKCLLELNAKAASLFETNDDHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCLGEFLPRLLDPSA -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SNX19-USP28 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SNX19-USP28 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SNX19-USP28 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | USP28 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | USP28 | C0376358 | Malignant neoplasm of prostate | 2 | CTD_human |