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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SORL1-CEP164 (FusionGDB2 ID:84646) |
Fusion Gene Summary for SORL1-CEP164 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SORL1-CEP164 | Fusion gene ID: 84646 | Hgene | Tgene | Gene symbol | SORL1 | CEP164 | Gene ID | 6653 | 22897 |
Gene name | sortilin related receptor 1 | centrosomal protein 164 | |
Synonyms | C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 | NPHP15 | |
Cytomap | 11q24.1 | 11q23.3 | |
Type of gene | protein-coding | protein-coding | |
Description | sortilin-related receptorLDLR relative with 11 ligand-binding repeatslow-density lipoprotein receptor relative with 11 ligand-binding repeatsmosaic protein LR11sortilin-related receptor, L(DLR class) A repeats containingsorting protein-related recept | centrosomal protein of 164 kDacentrosomal protein 164kDa | |
Modification date | 20200327 | 20200320 | |
UniProtAcc | . | Q9UPV0 | |
Ensembl transtripts involved in fusion gene | ENST00000260197, ENST00000532451, ENST00000525532, ENST00000532694, ENST00000534286, ENST00000527934, | ENST00000278935, ENST00000533706, | |
Fusion gene scores | * DoF score | 17 X 17 X 8=2312 | 4 X 5 X 4=80 |
# samples | 23 | 5 | |
** MAII score | log2(23/2312*10)=-3.3294356315563 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SORL1 [Title/Abstract] AND CEP164 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SORL1(121367758)-CEP164(117251330), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SORL1 | GO:0006605 | protein targeting | 16407538|21385844|27322061 |
Hgene | SORL1 | GO:0006622 | protein targeting to lysosome | 24523320 |
Hgene | SORL1 | GO:0006892 | post-Golgi vesicle-mediated transport | 17855360 |
Hgene | SORL1 | GO:0014910 | regulation of smooth muscle cell migration | 14764453 |
Hgene | SORL1 | GO:0032091 | negative regulation of protein binding | 16407538 |
Hgene | SORL1 | GO:0034067 | protein localization to Golgi apparatus | 17855360 |
Hgene | SORL1 | GO:0038020 | insulin receptor recycling | 27322061 |
Hgene | SORL1 | GO:0045053 | protein retention in Golgi apparatus | 17855360 |
Hgene | SORL1 | GO:0045732 | positive regulation of protein catabolic process | 24523320 |
Hgene | SORL1 | GO:0046628 | positive regulation of insulin receptor signaling pathway | 27322061 |
Hgene | SORL1 | GO:0051604 | protein maturation | 17855360 |
Hgene | SORL1 | GO:1900168 | positive regulation of glial cell-derived neurotrophic factor secretion | 21994944 |
Hgene | SORL1 | GO:1902430 | negative regulation of amyloid-beta formation | 16407538|22621900 |
Hgene | SORL1 | GO:1902960 | negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process | 16407538 |
Hgene | SORL1 | GO:1904179 | positive regulation of adipose tissue development | 27322061 |
Fusion gene breakpoints across SORL1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across CEP164 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-VG-A8LO-01A | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
ChimerDB4 | OV | TCGA-VG-A8LO | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
ChimerDB4 | OV | TCGA-VG-A8LO | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
ChimerDB4 | OV | TCGA-VG-A8LO-01A | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
ChimerDB4 | OV | TCGA-VG-A8LO-01A | SORL1 | chr11 | 121367758 | - | CEP164 | chr11 | 117251330 | + |
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Fusion Gene ORF analysis for SORL1-CEP164 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000260197 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
5CDS-3UTR | ENST00000260197 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
3UTR-3CDS | ENST00000532451 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
3UTR-3UTR | ENST00000532451 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3CDS | ENST00000525532 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3UTR | ENST00000525532 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3CDS | ENST00000532694 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3UTR | ENST00000532694 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3CDS | ENST00000534286 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3UTR | ENST00000534286 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3CDS | ENST00000527934 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
intron-3UTR | ENST00000527934 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + |
In-frame | ENST00000260197 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
5CDS-3UTR | ENST00000260197 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
3UTR-3CDS | ENST00000532451 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
3UTR-3UTR | ENST00000532451 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3CDS | ENST00000525532 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3UTR | ENST00000525532 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3CDS | ENST00000532694 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3UTR | ENST00000532694 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3CDS | ENST00000534286 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3UTR | ENST00000534286 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3CDS | ENST00000527934 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
intron-3UTR | ENST00000527934 | ENST00000533706 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000260197 | SORL1 | chr11 | 121367758 | + | ENST00000278935 | CEP164 | chr11 | 117251330 | + | 5234 | 1068 | 66 | 4133 | 1355 |
ENST00000260197 | SORL1 | chr11 | 121367758 | + | ENST00000278935 | CEP164 | chr11 | 117251329 | + | 5234 | 1068 | 66 | 4133 | 1355 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000260197 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251330 | + | 0.008269466 | 0.9917305 |
ENST00000260197 | ENST00000278935 | SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + | 0.008269466 | 0.9917305 |
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Fusion Genomic Features for SORL1-CEP164 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + | 8.56E-09 | 1 |
SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + | 8.56E-09 | 1 |
SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + | 8.56E-09 | 1 |
SORL1 | chr11 | 121367758 | + | CEP164 | chr11 | 117251329 | + | 8.56E-09 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for SORL1-CEP164 |
Go to FGviewer for the breakpoints of chr11:121367758-chr11:117251330 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | CEP164 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Plays a role in microtubule organization and/or maintenance for the formation of primary cilia (PC), a microtubule-based structure that protrudes from the surface of epithelial cells. Plays a critical role in G2/M checkpoint and nuclear divisions. A key player in the DNA damage-activated ATR/ATM signaling cascade since it is required for the proper phosphorylation of H2AX, RPA, CHEK2 and CHEK1. Plays a critical role in chromosome segregation, acting as a mediator required for the maintenance of genomic stability through modulation of MDC1, RPA and CHEK1. {ECO:0000269|PubMed:17954613, ECO:0000269|PubMed:18283122, ECO:0000269|PubMed:23348840}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 63_65 | 313.0 | 2215.0 | Motif | Cell attachment site |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 63_65 | 313.0 | 2215.0 | Motif | Cell attachment site |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 136_147 | 313.0 | 2215.0 | Repeat | Note=BNR 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 232_243 | 313.0 | 2215.0 | Repeat | Note=BNR 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 136_147 | 313.0 | 2215.0 | Repeat | Note=BNR 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 232_243 | 313.0 | 2215.0 | Repeat | Note=BNR 2 |
Tgene | CEP164 | chr11:121367758 | chr11:117251329 | ENST00000278935 | 10 | 33 | 1154_1206 | 439.0 | 1461.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CEP164 | chr11:121367758 | chr11:117251330 | ENST00000278935 | 10 | 33 | 1154_1206 | 439.0 | 1461.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CEP164 | chr11:121367758 | chr11:117251329 | ENST00000278935 | 10 | 33 | 468_955 | 439.0 | 1461.0 | Compositional bias | Note=Glu-rich | |
Tgene | CEP164 | chr11:121367758 | chr11:117251330 | ENST00000278935 | 10 | 33 | 468_955 | 439.0 | 1461.0 | Compositional bias | Note=Glu-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1026_1072 | 313.0 | 2215.0 | Domain | Note=EGF-like |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1076_1114 | 313.0 | 2215.0 | Domain | LDL-receptor class A 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1115_1155 | 313.0 | 2215.0 | Domain | LDL-receptor class A 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1156_1194 | 313.0 | 2215.0 | Domain | LDL-receptor class A 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1198_1236 | 313.0 | 2215.0 | Domain | LDL-receptor class A 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1238_1272 | 313.0 | 2215.0 | Domain | LDL-receptor class A 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1273_1317 | 313.0 | 2215.0 | Domain | LDL-receptor class A 6 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1323_1361 | 313.0 | 2215.0 | Domain | LDL-receptor class A 7 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1366_1405 | 313.0 | 2215.0 | Domain | LDL-receptor class A 8 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1417_1455 | 313.0 | 2215.0 | Domain | LDL-receptor class A 9 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1469_1508 | 313.0 | 2215.0 | Domain | LDL-receptor class A 10 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1512_1551 | 313.0 | 2215.0 | Domain | LDL-receptor class A 11 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1557_1649 | 313.0 | 2215.0 | Domain | Fibronectin type-III 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1653_1745 | 313.0 | 2215.0 | Domain | Fibronectin type-III 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1749_1844 | 313.0 | 2215.0 | Domain | Fibronectin type-III 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1843_1927 | 313.0 | 2215.0 | Domain | Fibronectin type-III 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 1934_2029 | 313.0 | 2215.0 | Domain | Fibronectin type-III 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 2030_2118 | 313.0 | 2215.0 | Domain | Fibronectin type-III 6 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1026_1072 | 313.0 | 2215.0 | Domain | Note=EGF-like |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1076_1114 | 313.0 | 2215.0 | Domain | LDL-receptor class A 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1115_1155 | 313.0 | 2215.0 | Domain | LDL-receptor class A 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1156_1194 | 313.0 | 2215.0 | Domain | LDL-receptor class A 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1198_1236 | 313.0 | 2215.0 | Domain | LDL-receptor class A 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1238_1272 | 313.0 | 2215.0 | Domain | LDL-receptor class A 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1273_1317 | 313.0 | 2215.0 | Domain | LDL-receptor class A 6 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1323_1361 | 313.0 | 2215.0 | Domain | LDL-receptor class A 7 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1366_1405 | 313.0 | 2215.0 | Domain | LDL-receptor class A 8 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1417_1455 | 313.0 | 2215.0 | Domain | LDL-receptor class A 9 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1469_1508 | 313.0 | 2215.0 | Domain | LDL-receptor class A 10 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1512_1551 | 313.0 | 2215.0 | Domain | LDL-receptor class A 11 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1557_1649 | 313.0 | 2215.0 | Domain | Fibronectin type-III 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1653_1745 | 313.0 | 2215.0 | Domain | Fibronectin type-III 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1749_1844 | 313.0 | 2215.0 | Domain | Fibronectin type-III 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1843_1927 | 313.0 | 2215.0 | Domain | Fibronectin type-III 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 1934_2029 | 313.0 | 2215.0 | Domain | Fibronectin type-III 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 2030_2118 | 313.0 | 2215.0 | Domain | Fibronectin type-III 6 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 2161_2164 | 313.0 | 2215.0 | Motif | Potential nuclear localization signal for the C-terminal fragment generated by PSEN1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 2161_2164 | 313.0 | 2215.0 | Motif | Potential nuclear localization signal for the C-terminal fragment generated by PSEN1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 441_452 | 313.0 | 2215.0 | Repeat | Note=BNR 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 521_532 | 313.0 | 2215.0 | Repeat | Note=BNR 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 562_573 | 313.0 | 2215.0 | Repeat | Note=BNR 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 800_843 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 844_887 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 888_932 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 933_970 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 971_1013 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 441_452 | 313.0 | 2215.0 | Repeat | Note=BNR 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 521_532 | 313.0 | 2215.0 | Repeat | Note=BNR 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 562_573 | 313.0 | 2215.0 | Repeat | Note=BNR 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 800_843 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 1 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 844_887 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 2 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 888_932 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 3 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 933_970 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 4 |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 971_1013 | 313.0 | 2215.0 | Repeat | Note=LDL-receptor class B 5 |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 2159_2214 | 313.0 | 2215.0 | Topological domain | Cytoplasmic |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 82_2137 | 313.0 | 2215.0 | Topological domain | Lumenal |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 2159_2214 | 313.0 | 2215.0 | Topological domain | Cytoplasmic |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 82_2137 | 313.0 | 2215.0 | Topological domain | Lumenal |
Hgene | SORL1 | chr11:121367758 | chr11:117251329 | ENST00000260197 | + | 6 | 48 | 2138_2158 | 313.0 | 2215.0 | Transmembrane | Helical |
Hgene | SORL1 | chr11:121367758 | chr11:117251330 | ENST00000260197 | + | 6 | 48 | 2138_2158 | 313.0 | 2215.0 | Transmembrane | Helical |
Tgene | CEP164 | chr11:121367758 | chr11:117251329 | ENST00000278935 | 10 | 33 | 110_122 | 439.0 | 1461.0 | Compositional bias | Note=Lys-rich | |
Tgene | CEP164 | chr11:121367758 | chr11:117251330 | ENST00000278935 | 10 | 33 | 110_122 | 439.0 | 1461.0 | Compositional bias | Note=Lys-rich | |
Tgene | CEP164 | chr11:121367758 | chr11:117251329 | ENST00000278935 | 10 | 33 | 56_89 | 439.0 | 1461.0 | Domain | WW | |
Tgene | CEP164 | chr11:121367758 | chr11:117251330 | ENST00000278935 | 10 | 33 | 56_89 | 439.0 | 1461.0 | Domain | WW |
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Fusion Gene Sequence for SORL1-CEP164 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000260197_ENST00000278935_TCGA-VG-A8LO-01A_SORL1_chr11_121367758_+_CEP164_chr11_117251330_length(transcript)=5234nt_BP=1068nt CCCGGAGCGGCGCGGGCGGCCTGGAGCCCCGGGAGCGGCGCGCGCGGTCCCGGCCCAGCGGCTCTCCTGGCCTCGCGCTGCACATTCTCT CCTGGCGGCGGCGCCACCTGCAGTAGCGTTCGCCCGAACATGGCGACACGGAGCAGCAGGAGGGAGTCGCGACTCCCGTTCCTATTCACC CTGGTCGCACTGCTGCCGCCCGGAGCTCTCTGCGAAGTCTGGACGCAGAGGCTGCACGGCGGCAGCGCGCCCTTGCCCCAGGACCGGGGC TTCCTCGTGGTGCAGGGCGACCCGCGCGAGCTGCGGCTGTGGGCGCGCGGGGATGCCAGGGGGGCGAGCCGCGCGGACGAGAAGCCGCTC CGGAGGAAACGGAGCGCTGCCCTGCAGCCCGAGCCCATCAAGGTGTACGGACAGGTTAGTCTGAATGATTCCCACAATCAGATGGTGGTG CACTGGGCTGGAGAGAAAAGCAACGTGATCGTGGCCTTGGCCCGAGATAGCCTGGCATTGGCGAGGCCCAAGAGCAGTGATGTGTACGTG TCTTACGACTATGGAAAATCATTCAAGAAAATTTCAGACAAGTTAAACTTTGGCTTGGGAAATAGGAGTGAAGCTGTTATCGCCCAGTTC TACCACAGCCCTGCGGACAACAAGCGGTACATCTTTGCAGACGCTTATGCCCAGTACCTCTGGATCACGTTTGACTTCTGCAACACTCTT CAAGGCTTTTCCATCCCATTTCGGGCAGCTGATCTCCTCCTACACAGTAAGGCCTCCAACCTTCTCTTGGGCTTTGACAGGTCCCACCCC AACAAGCAGCTGTGGAAGTCAGATGACTTTGGCCAGACCTGGATCATGATTCAGGAACATGTCAAGTCCTTTTCTTGGGGAATTGATCCC TATGACAAACCAAATACCATCTACATTGAACGACATGAACCCTCTGGCTACTCCACTGTCTTCCGAAGTACAGATTTCTTCCAGTCCCGG GAAAACCAGGAAGTGATCCTTGAGGAAGTGAGAGATTTTCAGCTTCGGGACAAGTACATGTTTGCTACAAAGGTGGTGGCCCAGCAACCA CTGGGAATAGAAGACAAGGATGACAGCCAGTCCAGCCAAGATGAGCTGCAGAGCAAGCAGTCCAAAGGCCTGGAGGAGAGGTTATCTCCT CCACTTCCACACGAGGAGCGGGCCCAGAGTCCCCCTCGCAGCCTGGCCACTGAAGAAGAGCCTCCCCAGGGCCCCGAGGGGCAGCCCGAG TGGAAGGAGGCAGAGGAGCTTGGGGAGGACTCTGCAGCCAGCCTCAGCCTGCAGCTGTCCCTCCAGAGGGAGCAGGCCCCAAGCCCACCT GCTGCCTGTGAGAAGGGCAAGGAGCAGCATTCCCAGGCCGAGGAGCTGGGCCCTGGGCAGGAAGAGGCAGAGGATCCTGAGGAGAAGGTG GCGGTCAGCCCCACCCCGCCAGTCTCTCCAGAGGTGCGATCCACAGAGCCTGTGGCTCCCCCAGAGCAGCTCTCAGAGGCTGCACTAAAG GCCATGGAAGAGGCAGTGGCCCAAGTACTCGAGCAAGACCAGAGGCACCTGCTGGAATCCAAGCAAGAGAAGATGCAGCAACTGCGGGAG AAGCTGTGCCAAGAGGAGGAAGAGGAGATCCTCCGGCTTCACCAGCAGAAAGAGCAATCTCTCAGTTCCTTGAGGGAGCGGCTGCAGAAA GCCATTGAGGAGGAGGAGGCCCGGATGAGAGAGGAGGAAAGCCAGAGGCTATCCTGGCTCCGAGCTCAGGTCCAGTCCAGCACACAAGCA GATGAGGACCAAATCAGGGCTGAGCAAGAGGCTTCCCTGCAGAAACTGAGAGAAGAGTTGGAGTCTCAACAGAAGGCTGAGAGGGCCAGC TTGGAACAGAAAAATAGGCAAATGCTGGAGCAGCTCAAGGAAGAGATAGAGGCTTCGGAGAAGAGCGAGCAGGCTGCCCTGAATGCTGCA AAGGAGAAGGCTCTGCAGCAGCTGAGGGAGCAGCTGGAAGGGGAGAGGAAAGAAGCTGTGGCAACGCTGGAGAAGGAGCACAGTGCTGAG CTGGAGCGGCTCTGCTCCTCATTGGAGGCCAAGCACCGGGAGGTGGTCTCCAGCCTCCAGAAGAAGATACAGGAAGCTCAACAGAAAGAG GAGGCCCAGCTGCAGAAGTGCCTTGGGCAAGTGGAGCACAGAGTTCACCAGAAGTCTTATCACGTGGCTGGGTATGAGCACGAGCTCAGC AGTCTCCTGCGAGAGAAGCGCCAGGAAGTGGAAGGGGAGCATGAGAGGAGGTTGGACAAGATGAAGGAGGAGCACCAGCAAGTGATGGCT AAGGCCAGAGAGCAGTATGAAGCTGAGGAGAGGAAGCAGCGGGCTGAGCTTCTGGGGCACCTGACCGGAGAGCTGGAGCGCCTGCAGAGG GCCCATGAACGAGAACTGGAGACTGTGAGGCAGGAGCAACACAAGCGTCTTGAGGACTTGCGGCGCCGGCACAGGGAGCAGGAAAGGAAG CTCCAGGATTTAGAGTTGGACCTTGAAACCAGAGCTAAAGATGTCAAGGCCAGATTGGCTCTGCTGGAGGTCCAGGAGGAGACCGCCCGG AGGGAGAAGCAGCAGCTGCTTGATGTGCAGAGGCAGGTTGCTCTGAAGAGTGAGGAAGCCACAGCCACCCATCAGCAGCTGGAGGAGGCA CAGAAGGAGCACACCCACCTGTTGCAGTCAAACCAGCAGCTCCGAGAAATTCTTGATGAGCTGCAGGCCCGCAAGCTGAAGCTGGAGTCC CAAGTGGATCTGCTGCAGGCTCAGAGCCAGCAACTGCAGAAACACTTCAGCAGCCTGGAGGCTGAAGCTCAAAAGAAGCAGCACCTGTTG AGAGAAGTGACAGTTGAGGAAAATAATGCTTCCCCACATTTTGAGCCAGATCTCCATATTGAGGACCTGAGGAAATCCCTTGGAACAAAC CAGACCAAAGAGGTGTCTTCTTCTCTCTCCCAGAGCAAGGAGGACTTATACTTGGACAGCCTGTCCTCCCACAATGTCTGGCACCTCCTC TCTGCTGAGGGGGTAGCCCTCCGTAGTGCCAAGGAGTTCCTTGTGCAGCAGACACGCTCCATGCGGAGGCGGCAGACAGCTCTGAAAGCT GCCCAGCAGCATTGGCGCCATGAGCTGGCCAGTGCGCAGGAGGTGGCCAAAGACCCACCAGGCATCAAGGCCCTGGAAGATATGCGCAAG AACCTGGAGAAGGAGACCAGGCACCTGGATGAGATGAAGTCGGCCATGCGGAAAGGCCACAACCTGCTGAAGAAGAAAGAGGAGAAGCTG AATCAGTTGGAGTCCTCTCTTTGGGAAGAGGCCTCAGATGAGGGCACTCTGGGAGGATCCCCCACCAAGAAGGCAGTAACCTTCGACCTC AGTGACATGGACAGCCTGAGCAGTGAAAGTTCTGAATCTTTTTCCCCGCCTCACCGTGAGTGGTGGCGGCAGCAGAGGATCGACTCAACC CCGAGTCTCACCTCCCGCAAGATCCACGGGCTTAGCCACTCCCTCCGGCAGATCAGCAGCCAGCTGAGCAGTGTCCTCAGCATCCTGGAC AGCCTCAACCCTCAGTCGCCGCCGCCGCTCCTCGCCTCCATGCCAGCCCAGCTCCCTCCCCGGGACCCTAAGAGCACCCCCACCCCCACC TACTATGGCTCCCTGGCCAGGTTCTCAGCCTTATCATCTGCTACACCCACGTCCACCCAATGGGCCTGGGATTCAGGGCAGGGGCCCAGG CTCCCCTCCTCTGTGGCTCAAACGGTGGACGACTTCCTGTTGGAGAAGTGGCGCAAGTATTTTCCATCTGGCATCCCGCTGCTCAGCAAC AGCCCCACCCCGCTGGAGAGCAGGCTGGGTTACATGTCTGCCAGTGAGCAGCTCCGGCTCCTACAGCACTCCCATTCGCAAGTCCCTGAG GCGGGCAGCACCACCTTTCAGGGCATAATTGAGGCCAACCGGAGGTGGCTGGAACGTGTCAAGAATGACCCCAGGTTACCTCTCTTCTCG TCAACACCCAAGCCAAAAGCTACTTTGAGCCTCCTGCAGCTGGGCCTTGATGAGCACAACAGAGTGAAGGTGTATCGCTTCTGAGGCCCT GAGCAGGGGCTTGGGGCAGCCCAGCCTCTCCTCCACCCAGACCAAGTGCCTGAGGAGCTGCCTGCCTTCTTCCATCTGAGAAAGCACCCT CCTTCCCCCTTTGACTTGCAGGAGCCACCAGGGACCAGGGGGTTGAGTGGAACAGTAAAGCCACACATTCTGTGACTATATAACCTATCT CAGGCTAAAATGTGTGGACTCGTACGAGCTCTTGTCATTGACATGGCAAGCTGATGGCGTGCGGTGGCTGCGGGGTATCAGGGCCGGGAG CCCTTTGGGAGGAAGGGAGGCGTTAGAGGAGCTGCCTTCGGAGGCTCAGGGAGTCCCTTTGGAGCTGGTTGTTTCCTTGGCCCTGCAGCG CACTGCTCGGGGCTCCCAAGGAGGTTGTGTGTATGGTTCTTAATTCATCAGGACAAAGACCCCCAGCATGTGTGTACCCTGGGACCCGAT TTCTCTGGGCCCACATCTATCTCCAATACCTCAGCCTCAGATCAGACCCTTTCTTTTTTGTCTTTCTTCTCTTAATTTTTAAATGCCTCT TTTCTTGAGCATTCCATCTCTCTTTTTGACCCTCTCAGGACTGGGCTTAGCTGTCCAGAGCCCTGCCGGAGGGTGCTGGGGGCTGTCCCT CTGCAGGCACTGTGTTTTCCTCAGGGGCTGTCCTCAGAACACCCCTCCTGCTCCCTGGGGCTCCTCAGGGAGCCATTTCAGCTGGAGTCT CAGGTCTCAAAAACAACTTCTCCAGGAGGCCAAAAAAAGACTGGGTTGGCTTCTGGTCCTCATGATGGCTTTTATCCTCCTGGGACACTT TGGGTATATTCATGGGCATTGTTTCCATCTGTCTTTTCTACCTGTGCCACCCCTGCCCTGATTCCACGGCTGCCTCAGGCAGGCAGGCAA GGAGCTAGGCCGGTGCCCGGCCCTGGCAGCAAGGGGTCTTTGTGCAGTTGGAGATGCTGCCGTTGTGGCAGAGCGTCCTGCAGCCCCGCT TCCATCAGCAGGCTCTGGGGTGGGGGCTTTGCAGGGGATGCTCTCTGATGTTTGTTCCGTTGTTTAAATAAAATGCACTTATTTTTGTTT >In-frame_ENST00000260197_ENST00000278935_TCGA-VG-A8LO-01A_SORL1_chr11_121367758_+_CEP164_chr11_117251330_length(amino acids)=1355AA_start in transcript=66_stop in transcript=4133 MASRCTFSPGGGATCSSVRPNMATRSSRRESRLPFLFTLVALLPPGALCEVWTQRLHGGSAPLPQDRGFLVVQGDPRELRLWARGDARGA SRADEKPLRRKRSAALQPEPIKVYGQVSLNDSHNQMVVHWAGEKSNVIVALARDSLALARPKSSDVYVSYDYGKSFKKISDKLNFGLGNR SEAVIAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFSIPFRAADLLLHSKASNLLLGFDRSHPNKQLWKSDDFGQTWIMIQEHVK SFSWGIDPYDKPNTIYIERHEPSGYSTVFRSTDFFQSRENQEVILEEVRDFQLRDKYMFATKVVAQQPLGIEDKDDSQSSQDELQSKQSK GLEERLSPPLPHEERAQSPPRSLATEEEPPQGPEGQPEWKEAEELGEDSAASLSLQLSLQREQAPSPPAACEKGKEQHSQAEELGPGQEE AEDPEEKVAVSPTPPVSPEVRSTEPVAPPEQLSEAALKAMEEAVAQVLEQDQRHLLESKQEKMQQLREKLCQEEEEEILRLHQQKEQSLS SLRERLQKAIEEEEARMREEESQRLSWLRAQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQKNRQMLEQLKEEIEASEKS EQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAELERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV AGYEHELSSLLREKRQEVEGEHERRLDKMKEEHQQVMAKAREQYEAEERKQRAELLGHLTGELERLQRAHERELETVRQEQHKRLEDLRR RHREQERKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQ ARKLKLESQVDLLQAQSQQLQKHFSSLEAEAQKKQHLLREVTVEENNASPHFEPDLHIEDLRKSLGTNQTKEVSSSLSQSKEDLYLDSLS SHNVWHLLSAEGVALRSAKEFLVQQTRSMRRRQTALKAAQQHWRHELASAQEVAKDPPGIKALEDMRKNLEKETRHLDEMKSAMRKGHNL LKKKEEKLNQLESSLWEEASDEGTLGGSPTKKAVTFDLSDMDSLSSESSESFSPPHREWWRQQRIDSTPSLTSRKIHGLSHSLRQISSQL SSVLSILDSLNPQSPPPLLASMPAQLPPRDPKSTPTPTYYGSLARFSALSSATPTSTQWAWDSGQGPRLPSSVAQTVDDFLLEKWRKYFP SGIPLLSNSPTPLESRLGYMSASEQLRLLQHSHSQVPEAGSTTFQGIIEANRRWLERVKNDPRLPLFSSTPKPKATLSLLQLGLDEHNRV -------------------------------------------------------------- >In-frame_ENST00000260197_ENST00000278935_TCGA-VG-A8LO_SORL1_chr11_121367758_+_CEP164_chr11_117251329_length(transcript)=5234nt_BP=1068nt CCCGGAGCGGCGCGGGCGGCCTGGAGCCCCGGGAGCGGCGCGCGCGGTCCCGGCCCAGCGGCTCTCCTGGCCTCGCGCTGCACATTCTCT CCTGGCGGCGGCGCCACCTGCAGTAGCGTTCGCCCGAACATGGCGACACGGAGCAGCAGGAGGGAGTCGCGACTCCCGTTCCTATTCACC CTGGTCGCACTGCTGCCGCCCGGAGCTCTCTGCGAAGTCTGGACGCAGAGGCTGCACGGCGGCAGCGCGCCCTTGCCCCAGGACCGGGGC TTCCTCGTGGTGCAGGGCGACCCGCGCGAGCTGCGGCTGTGGGCGCGCGGGGATGCCAGGGGGGCGAGCCGCGCGGACGAGAAGCCGCTC CGGAGGAAACGGAGCGCTGCCCTGCAGCCCGAGCCCATCAAGGTGTACGGACAGGTTAGTCTGAATGATTCCCACAATCAGATGGTGGTG CACTGGGCTGGAGAGAAAAGCAACGTGATCGTGGCCTTGGCCCGAGATAGCCTGGCATTGGCGAGGCCCAAGAGCAGTGATGTGTACGTG TCTTACGACTATGGAAAATCATTCAAGAAAATTTCAGACAAGTTAAACTTTGGCTTGGGAAATAGGAGTGAAGCTGTTATCGCCCAGTTC TACCACAGCCCTGCGGACAACAAGCGGTACATCTTTGCAGACGCTTATGCCCAGTACCTCTGGATCACGTTTGACTTCTGCAACACTCTT CAAGGCTTTTCCATCCCATTTCGGGCAGCTGATCTCCTCCTACACAGTAAGGCCTCCAACCTTCTCTTGGGCTTTGACAGGTCCCACCCC AACAAGCAGCTGTGGAAGTCAGATGACTTTGGCCAGACCTGGATCATGATTCAGGAACATGTCAAGTCCTTTTCTTGGGGAATTGATCCC TATGACAAACCAAATACCATCTACATTGAACGACATGAACCCTCTGGCTACTCCACTGTCTTCCGAAGTACAGATTTCTTCCAGTCCCGG GAAAACCAGGAAGTGATCCTTGAGGAAGTGAGAGATTTTCAGCTTCGGGACAAGTACATGTTTGCTACAAAGGTGGTGGCCCAGCAACCA CTGGGAATAGAAGACAAGGATGACAGCCAGTCCAGCCAAGATGAGCTGCAGAGCAAGCAGTCCAAAGGCCTGGAGGAGAGGTTATCTCCT CCACTTCCACACGAGGAGCGGGCCCAGAGTCCCCCTCGCAGCCTGGCCACTGAAGAAGAGCCTCCCCAGGGCCCCGAGGGGCAGCCCGAG TGGAAGGAGGCAGAGGAGCTTGGGGAGGACTCTGCAGCCAGCCTCAGCCTGCAGCTGTCCCTCCAGAGGGAGCAGGCCCCAAGCCCACCT GCTGCCTGTGAGAAGGGCAAGGAGCAGCATTCCCAGGCCGAGGAGCTGGGCCCTGGGCAGGAAGAGGCAGAGGATCCTGAGGAGAAGGTG GCGGTCAGCCCCACCCCGCCAGTCTCTCCAGAGGTGCGATCCACAGAGCCTGTGGCTCCCCCAGAGCAGCTCTCAGAGGCTGCACTAAAG GCCATGGAAGAGGCAGTGGCCCAAGTACTCGAGCAAGACCAGAGGCACCTGCTGGAATCCAAGCAAGAGAAGATGCAGCAACTGCGGGAG AAGCTGTGCCAAGAGGAGGAAGAGGAGATCCTCCGGCTTCACCAGCAGAAAGAGCAATCTCTCAGTTCCTTGAGGGAGCGGCTGCAGAAA GCCATTGAGGAGGAGGAGGCCCGGATGAGAGAGGAGGAAAGCCAGAGGCTATCCTGGCTCCGAGCTCAGGTCCAGTCCAGCACACAAGCA GATGAGGACCAAATCAGGGCTGAGCAAGAGGCTTCCCTGCAGAAACTGAGAGAAGAGTTGGAGTCTCAACAGAAGGCTGAGAGGGCCAGC TTGGAACAGAAAAATAGGCAAATGCTGGAGCAGCTCAAGGAAGAGATAGAGGCTTCGGAGAAGAGCGAGCAGGCTGCCCTGAATGCTGCA AAGGAGAAGGCTCTGCAGCAGCTGAGGGAGCAGCTGGAAGGGGAGAGGAAAGAAGCTGTGGCAACGCTGGAGAAGGAGCACAGTGCTGAG CTGGAGCGGCTCTGCTCCTCATTGGAGGCCAAGCACCGGGAGGTGGTCTCCAGCCTCCAGAAGAAGATACAGGAAGCTCAACAGAAAGAG GAGGCCCAGCTGCAGAAGTGCCTTGGGCAAGTGGAGCACAGAGTTCACCAGAAGTCTTATCACGTGGCTGGGTATGAGCACGAGCTCAGC AGTCTCCTGCGAGAGAAGCGCCAGGAAGTGGAAGGGGAGCATGAGAGGAGGTTGGACAAGATGAAGGAGGAGCACCAGCAAGTGATGGCT AAGGCCAGAGAGCAGTATGAAGCTGAGGAGAGGAAGCAGCGGGCTGAGCTTCTGGGGCACCTGACCGGAGAGCTGGAGCGCCTGCAGAGG GCCCATGAACGAGAACTGGAGACTGTGAGGCAGGAGCAACACAAGCGTCTTGAGGACTTGCGGCGCCGGCACAGGGAGCAGGAAAGGAAG CTCCAGGATTTAGAGTTGGACCTTGAAACCAGAGCTAAAGATGTCAAGGCCAGATTGGCTCTGCTGGAGGTCCAGGAGGAGACCGCCCGG AGGGAGAAGCAGCAGCTGCTTGATGTGCAGAGGCAGGTTGCTCTGAAGAGTGAGGAAGCCACAGCCACCCATCAGCAGCTGGAGGAGGCA CAGAAGGAGCACACCCACCTGTTGCAGTCAAACCAGCAGCTCCGAGAAATTCTTGATGAGCTGCAGGCCCGCAAGCTGAAGCTGGAGTCC CAAGTGGATCTGCTGCAGGCTCAGAGCCAGCAACTGCAGAAACACTTCAGCAGCCTGGAGGCTGAAGCTCAAAAGAAGCAGCACCTGTTG AGAGAAGTGACAGTTGAGGAAAATAATGCTTCCCCACATTTTGAGCCAGATCTCCATATTGAGGACCTGAGGAAATCCCTTGGAACAAAC CAGACCAAAGAGGTGTCTTCTTCTCTCTCCCAGAGCAAGGAGGACTTATACTTGGACAGCCTGTCCTCCCACAATGTCTGGCACCTCCTC TCTGCTGAGGGGGTAGCCCTCCGTAGTGCCAAGGAGTTCCTTGTGCAGCAGACACGCTCCATGCGGAGGCGGCAGACAGCTCTGAAAGCT GCCCAGCAGCATTGGCGCCATGAGCTGGCCAGTGCGCAGGAGGTGGCCAAAGACCCACCAGGCATCAAGGCCCTGGAAGATATGCGCAAG AACCTGGAGAAGGAGACCAGGCACCTGGATGAGATGAAGTCGGCCATGCGGAAAGGCCACAACCTGCTGAAGAAGAAAGAGGAGAAGCTG AATCAGTTGGAGTCCTCTCTTTGGGAAGAGGCCTCAGATGAGGGCACTCTGGGAGGATCCCCCACCAAGAAGGCAGTAACCTTCGACCTC AGTGACATGGACAGCCTGAGCAGTGAAAGTTCTGAATCTTTTTCCCCGCCTCACCGTGAGTGGTGGCGGCAGCAGAGGATCGACTCAACC CCGAGTCTCACCTCCCGCAAGATCCACGGGCTTAGCCACTCCCTCCGGCAGATCAGCAGCCAGCTGAGCAGTGTCCTCAGCATCCTGGAC AGCCTCAACCCTCAGTCGCCGCCGCCGCTCCTCGCCTCCATGCCAGCCCAGCTCCCTCCCCGGGACCCTAAGAGCACCCCCACCCCCACC TACTATGGCTCCCTGGCCAGGTTCTCAGCCTTATCATCTGCTACACCCACGTCCACCCAATGGGCCTGGGATTCAGGGCAGGGGCCCAGG CTCCCCTCCTCTGTGGCTCAAACGGTGGACGACTTCCTGTTGGAGAAGTGGCGCAAGTATTTTCCATCTGGCATCCCGCTGCTCAGCAAC AGCCCCACCCCGCTGGAGAGCAGGCTGGGTTACATGTCTGCCAGTGAGCAGCTCCGGCTCCTACAGCACTCCCATTCGCAAGTCCCTGAG GCGGGCAGCACCACCTTTCAGGGCATAATTGAGGCCAACCGGAGGTGGCTGGAACGTGTCAAGAATGACCCCAGGTTACCTCTCTTCTCG TCAACACCCAAGCCAAAAGCTACTTTGAGCCTCCTGCAGCTGGGCCTTGATGAGCACAACAGAGTGAAGGTGTATCGCTTCTGAGGCCCT GAGCAGGGGCTTGGGGCAGCCCAGCCTCTCCTCCACCCAGACCAAGTGCCTGAGGAGCTGCCTGCCTTCTTCCATCTGAGAAAGCACCCT CCTTCCCCCTTTGACTTGCAGGAGCCACCAGGGACCAGGGGGTTGAGTGGAACAGTAAAGCCACACATTCTGTGACTATATAACCTATCT CAGGCTAAAATGTGTGGACTCGTACGAGCTCTTGTCATTGACATGGCAAGCTGATGGCGTGCGGTGGCTGCGGGGTATCAGGGCCGGGAG CCCTTTGGGAGGAAGGGAGGCGTTAGAGGAGCTGCCTTCGGAGGCTCAGGGAGTCCCTTTGGAGCTGGTTGTTTCCTTGGCCCTGCAGCG CACTGCTCGGGGCTCCCAAGGAGGTTGTGTGTATGGTTCTTAATTCATCAGGACAAAGACCCCCAGCATGTGTGTACCCTGGGACCCGAT TTCTCTGGGCCCACATCTATCTCCAATACCTCAGCCTCAGATCAGACCCTTTCTTTTTTGTCTTTCTTCTCTTAATTTTTAAATGCCTCT TTTCTTGAGCATTCCATCTCTCTTTTTGACCCTCTCAGGACTGGGCTTAGCTGTCCAGAGCCCTGCCGGAGGGTGCTGGGGGCTGTCCCT CTGCAGGCACTGTGTTTTCCTCAGGGGCTGTCCTCAGAACACCCCTCCTGCTCCCTGGGGCTCCTCAGGGAGCCATTTCAGCTGGAGTCT CAGGTCTCAAAAACAACTTCTCCAGGAGGCCAAAAAAAGACTGGGTTGGCTTCTGGTCCTCATGATGGCTTTTATCCTCCTGGGACACTT TGGGTATATTCATGGGCATTGTTTCCATCTGTCTTTTCTACCTGTGCCACCCCTGCCCTGATTCCACGGCTGCCTCAGGCAGGCAGGCAA GGAGCTAGGCCGGTGCCCGGCCCTGGCAGCAAGGGGTCTTTGTGCAGTTGGAGATGCTGCCGTTGTGGCAGAGCGTCCTGCAGCCCCGCT TCCATCAGCAGGCTCTGGGGTGGGGGCTTTGCAGGGGATGCTCTCTGATGTTTGTTCCGTTGTTTAAATAAAATGCACTTATTTTTGTTT >In-frame_ENST00000260197_ENST00000278935_TCGA-VG-A8LO_SORL1_chr11_121367758_+_CEP164_chr11_117251329_length(amino acids)=1355AA_start in transcript=66_stop in transcript=4133 MASRCTFSPGGGATCSSVRPNMATRSSRRESRLPFLFTLVALLPPGALCEVWTQRLHGGSAPLPQDRGFLVVQGDPRELRLWARGDARGA SRADEKPLRRKRSAALQPEPIKVYGQVSLNDSHNQMVVHWAGEKSNVIVALARDSLALARPKSSDVYVSYDYGKSFKKISDKLNFGLGNR SEAVIAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFSIPFRAADLLLHSKASNLLLGFDRSHPNKQLWKSDDFGQTWIMIQEHVK SFSWGIDPYDKPNTIYIERHEPSGYSTVFRSTDFFQSRENQEVILEEVRDFQLRDKYMFATKVVAQQPLGIEDKDDSQSSQDELQSKQSK GLEERLSPPLPHEERAQSPPRSLATEEEPPQGPEGQPEWKEAEELGEDSAASLSLQLSLQREQAPSPPAACEKGKEQHSQAEELGPGQEE AEDPEEKVAVSPTPPVSPEVRSTEPVAPPEQLSEAALKAMEEAVAQVLEQDQRHLLESKQEKMQQLREKLCQEEEEEILRLHQQKEQSLS SLRERLQKAIEEEEARMREEESQRLSWLRAQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQKNRQMLEQLKEEIEASEKS EQAALNAAKEKALQQLREQLEGERKEAVATLEKEHSAELERLCSSLEAKHREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHV AGYEHELSSLLREKRQEVEGEHERRLDKMKEEHQQVMAKAREQYEAEERKQRAELLGHLTGELERLQRAHERELETVRQEQHKRLEDLRR RHREQERKLQDLELDLETRAKDVKARLALLEVQEETARREKQQLLDVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQ ARKLKLESQVDLLQAQSQQLQKHFSSLEAEAQKKQHLLREVTVEENNASPHFEPDLHIEDLRKSLGTNQTKEVSSSLSQSKEDLYLDSLS SHNVWHLLSAEGVALRSAKEFLVQQTRSMRRRQTALKAAQQHWRHELASAQEVAKDPPGIKALEDMRKNLEKETRHLDEMKSAMRKGHNL LKKKEEKLNQLESSLWEEASDEGTLGGSPTKKAVTFDLSDMDSLSSESSESFSPPHREWWRQQRIDSTPSLTSRKIHGLSHSLRQISSQL SSVLSILDSLNPQSPPPLLASMPAQLPPRDPKSTPTPTYYGSLARFSALSSATPTSTQWAWDSGQGPRLPSSVAQTVDDFLLEKWRKYFP SGIPLLSNSPTPLESRLGYMSASEQLRLLQHSHSQVPEAGSTTFQGIIEANRRWLERVKNDPRLPLFSSTPKPKATLSLLQLGLDEHNRV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SORL1-CEP164 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | CEP164 | chr11:121367758 | chr11:117251329 | ENST00000278935 | 10 | 33 | 1_194 | 439.0 | 1461.0 | ATRIP | |
Tgene | CEP164 | chr11:121367758 | chr11:117251330 | ENST00000278935 | 10 | 33 | 1_194 | 439.0 | 1461.0 | ATRIP |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SORL1-CEP164 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SORL1-CEP164 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SORL1 | C0002395 | Alzheimer's Disease | 4 | UNIPROT |
Hgene | SORL1 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
Hgene | SORL1 | C0008370 | Cholestasis | 1 | CTD_human |
Hgene | SORL1 | C0019193 | Hepatitis, Toxic | 1 | CTD_human |
Hgene | SORL1 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Hgene | SORL1 | C0234985 | Mental deterioration | 1 | CTD_human |
Hgene | SORL1 | C0235480 | Paroxysmal atrial fibrillation | 1 | CTD_human |
Hgene | SORL1 | C0276496 | Familial Alzheimer Disease (FAD) | 1 | ORPHANET |
Hgene | SORL1 | C0338656 | Impaired cognition | 1 | CTD_human |
Hgene | SORL1 | C0860207 | Drug-Induced Liver Disease | 1 | CTD_human |
Hgene | SORL1 | C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human |
Hgene | SORL1 | C1270972 | Mild cognitive disorder | 1 | CTD_human |
Hgene | SORL1 | C2585653 | Persistent atrial fibrillation | 1 | CTD_human |
Hgene | SORL1 | C3468561 | familial atrial fibrillation | 1 | CTD_human |
Hgene | SORL1 | C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human |
Hgene | SORL1 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
Hgene | SORL1 | C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |
Tgene | CEP164 | C0403553 | Renal dysplasia and retinal aplasia (disorder) | 1 | GENOMICS_ENGLAND;ORPHANET |
Tgene | CEP164 | C3541853 | NEPHRONOPHTHISIS 15 | 1 | CTD_human;GENOMICS_ENGLAND;UNIPROT |