|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SPG11-TPCN1 (FusionGDB2 ID:85155) |
Fusion Gene Summary for SPG11-TPCN1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SPG11-TPCN1 | Fusion gene ID: 85155 | Hgene | Tgene | Gene symbol | SPG11 | TPCN1 | Gene ID | 80208 | 53373 |
Gene name | SPG11 vesicle trafficking associated, spatacsin | two pore segment channel 1 | |
Synonyms | ALS5|CMT2X|KIAA1840 | TPC1 | |
Cytomap | 15q21.1 | 12q24.13 | |
Type of gene | protein-coding | protein-coding | |
Description | spatacsinSPG11, spatacsin vesicle trafficking associatedamyotrophic lateral sclerosis 5colorectal carcinoma-associated proteinspastic paraplegia 11 (autosomal recessive)spastic paraplegia 11 protein | two pore calcium channel protein 1two-pore channel 1, homologvoltage-dependent calcium channel protein TPC1 | |
Modification date | 20200329 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000261866, ENST00000535302, ENST00000427534, ENST00000558319, ENST00000558253, ENST00000559193, | ENST00000335509, ENST00000550785, ENST00000541517, ENST00000392569, ENST00000546787, | |
Fusion gene scores | * DoF score | 11 X 11 X 7=847 | 7 X 7 X 3=147 |
# samples | 12 | 7 | |
** MAII score | log2(12/847*10)=-2.81932756372368 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/147*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SPG11 [Title/Abstract] AND TPCN1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SPG11(44925703)-TPCN1(113723694), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | TPCN1 | GO:0010508 | positive regulation of autophagy | 22012985 |
Fusion gene breakpoints across SPG11 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TPCN1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-8080-01A | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
Top |
Fusion Gene ORF analysis for SPG11-TPCN1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000261866 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000261866 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000261866 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000261866 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
5CDS-intron | ENST00000261866 | ENST00000546787 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000535302 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000535302 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000535302 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000535302 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
5CDS-intron | ENST00000535302 | ENST00000546787 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000427534 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000427534 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000427534 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000427534 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
5CDS-intron | ENST00000427534 | ENST00000546787 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000558319 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000558319 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000558319 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000558319 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
5CDS-intron | ENST00000558319 | ENST00000546787 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
intron-3CDS | ENST00000558253 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
intron-3CDS | ENST00000558253 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
intron-3CDS | ENST00000558253 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
intron-3CDS | ENST00000558253 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
intron-intron | ENST00000558253 | ENST00000546787 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000559193 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000559193 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000559193 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
In-frame | ENST00000559193 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
5CDS-intron | ENST00000559193 | ENST00000546787 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000261866 | SPG11 | chr15 | 44925703 | - | ENST00000335509 | TPCN1 | chr12 | 113723694 | + | 5259 | 1752 | 17 | 2749 | 910 |
ENST00000261866 | SPG11 | chr15 | 44925703 | - | ENST00000550785 | TPCN1 | chr12 | 113723694 | + | 5259 | 1752 | 17 | 2749 | 910 |
ENST00000261866 | SPG11 | chr15 | 44925703 | - | ENST00000541517 | TPCN1 | chr12 | 113723694 | + | 5256 | 1752 | 17 | 2749 | 910 |
ENST00000261866 | SPG11 | chr15 | 44925703 | - | ENST00000392569 | TPCN1 | chr12 | 113723694 | + | 2868 | 1752 | 17 | 2749 | 910 |
ENST00000535302 | SPG11 | chr15 | 44925703 | - | ENST00000335509 | TPCN1 | chr12 | 113723694 | + | 5270 | 1763 | 28 | 2760 | 910 |
ENST00000535302 | SPG11 | chr15 | 44925703 | - | ENST00000550785 | TPCN1 | chr12 | 113723694 | + | 5270 | 1763 | 28 | 2760 | 910 |
ENST00000535302 | SPG11 | chr15 | 44925703 | - | ENST00000541517 | TPCN1 | chr12 | 113723694 | + | 5267 | 1763 | 28 | 2760 | 910 |
ENST00000535302 | SPG11 | chr15 | 44925703 | - | ENST00000392569 | TPCN1 | chr12 | 113723694 | + | 2879 | 1763 | 28 | 2760 | 910 |
ENST00000427534 | SPG11 | chr15 | 44925703 | - | ENST00000335509 | TPCN1 | chr12 | 113723694 | + | 5242 | 1735 | 0 | 2732 | 910 |
ENST00000427534 | SPG11 | chr15 | 44925703 | - | ENST00000550785 | TPCN1 | chr12 | 113723694 | + | 5242 | 1735 | 0 | 2732 | 910 |
ENST00000427534 | SPG11 | chr15 | 44925703 | - | ENST00000541517 | TPCN1 | chr12 | 113723694 | + | 5239 | 1735 | 0 | 2732 | 910 |
ENST00000427534 | SPG11 | chr15 | 44925703 | - | ENST00000392569 | TPCN1 | chr12 | 113723694 | + | 2851 | 1735 | 0 | 2732 | 910 |
ENST00000558319 | SPG11 | chr15 | 44925703 | - | ENST00000335509 | TPCN1 | chr12 | 113723694 | + | 5273 | 1766 | 31 | 2763 | 910 |
ENST00000558319 | SPG11 | chr15 | 44925703 | - | ENST00000550785 | TPCN1 | chr12 | 113723694 | + | 5273 | 1766 | 31 | 2763 | 910 |
ENST00000558319 | SPG11 | chr15 | 44925703 | - | ENST00000541517 | TPCN1 | chr12 | 113723694 | + | 5270 | 1766 | 31 | 2763 | 910 |
ENST00000558319 | SPG11 | chr15 | 44925703 | - | ENST00000392569 | TPCN1 | chr12 | 113723694 | + | 2882 | 1766 | 31 | 2763 | 910 |
ENST00000559193 | SPG11 | chr15 | 44925703 | - | ENST00000335509 | TPCN1 | chr12 | 113723694 | + | 5253 | 1746 | 11 | 2743 | 910 |
ENST00000559193 | SPG11 | chr15 | 44925703 | - | ENST00000550785 | TPCN1 | chr12 | 113723694 | + | 5253 | 1746 | 11 | 2743 | 910 |
ENST00000559193 | SPG11 | chr15 | 44925703 | - | ENST00000541517 | TPCN1 | chr12 | 113723694 | + | 5250 | 1746 | 11 | 2743 | 910 |
ENST00000559193 | SPG11 | chr15 | 44925703 | - | ENST00000392569 | TPCN1 | chr12 | 113723694 | + | 2862 | 1746 | 11 | 2743 | 910 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000261866 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001175169 | 0.9988248 |
ENST00000261866 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001175169 | 0.9988248 |
ENST00000261866 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001201553 | 0.9987985 |
ENST00000261866 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.0018229 | 0.99817705 |
ENST00000535302 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001186831 | 0.99881315 |
ENST00000535302 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001186831 | 0.99881315 |
ENST00000535302 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001212559 | 0.99878746 |
ENST00000535302 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001846698 | 0.99815327 |
ENST00000427534 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001176992 | 0.998823 |
ENST00000427534 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001176992 | 0.998823 |
ENST00000427534 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001203507 | 0.99879646 |
ENST00000427534 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001828537 | 0.99817145 |
ENST00000558319 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.00118008 | 0.9988199 |
ENST00000558319 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.00118008 | 0.9988199 |
ENST00000558319 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001203517 | 0.99879646 |
ENST00000558319 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001830543 | 0.9981694 |
ENST00000559193 | ENST00000335509 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.00120141 | 0.9987986 |
ENST00000559193 | ENST00000550785 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.00120141 | 0.9987986 |
ENST00000559193 | ENST00000541517 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001227809 | 0.9987722 |
ENST00000559193 | ENST00000392569 | SPG11 | chr15 | 44925703 | - | TPCN1 | chr12 | 113723694 | + | 0.001886393 | 0.99811363 |
Top |
Fusion Genomic Features for SPG11-TPCN1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
SPG11 | chr15 | 44925702 | - | TPCN1 | chr12 | 113723693 | + | 0.000316876 | 0.99968314 |
SPG11 | chr15 | 44925702 | - | TPCN1 | chr12 | 113723693 | + | 0.000316876 | 0.99968314 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for SPG11-TPCN1 |
Go to FGviewer for the breakpoints of chr15:44925703-chr12:113723694 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 769_796 | 484.3333333333333 | 817.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 769_796 | 556.3333333333334 | 889.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 769_796 | 556.3333333333334 | 889.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 630_653 | 484.3333333333333 | 817.0 | Intramembrane | Helical%3B Pore-forming | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 630_653 | 556.3333333333334 | 889.0 | Intramembrane | Helical%3B Pore-forming | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 630_653 | 556.3333333333334 | 889.0 | Intramembrane | Helical%3B Pore-forming | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 501_503 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 527_534 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 550_573 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 595_629 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 654_670 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 692_816 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 595_629 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 654_670 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 692_816 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 595_629 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 654_670 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 692_816 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 504_526 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 535_549 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 574_594 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 671_691 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 574_594 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 671_691 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 574_594 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 671_691 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 263_286 | 484.3333333333333 | 817.0 | Intramembrane | Helical%3B Pore-forming | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 263_286 | 556.3333333333334 | 889.0 | Intramembrane | Helical%3B Pore-forming | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 263_286 | 556.3333333333334 | 889.0 | Intramembrane | Helical%3B Pore-forming | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 134_134 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 156_177 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 199_200 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 1_112 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 221_234 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 256_262 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 287_294 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 316_444 | 484.3333333333333 | 817.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 466_479 | 484.3333333333333 | 817.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 134_134 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 156_177 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 199_200 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 1_112 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 221_234 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 256_262 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 287_294 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 316_444 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 466_479 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 501_503 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 527_534 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 550_573 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 134_134 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 156_177 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 199_200 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 1_112 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 221_234 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 256_262 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 287_294 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 316_444 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 466_479 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 501_503 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 527_534 | 556.3333333333334 | 889.0 | Topological domain | Extracellular | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 550_573 | 556.3333333333334 | 889.0 | Topological domain | Cytoplasmic | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 113_133 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 135_155 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 178_198 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 201_220 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 235_255 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 295_315 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 445_465 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000335509 | 16 | 28 | 480_500 | 484.3333333333333 | 817.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 113_133 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 135_155 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 178_198 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 201_220 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 235_255 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 295_315 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 445_465 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 480_500 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 504_526 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000541517 | 16 | 28 | 535_549 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 113_133 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 135_155 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 178_198 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 201_220 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 235_255 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 295_315 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 445_465 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 480_500 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 504_526 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II | |
Tgene | TPCN1 | chr15:44925703 | chr12:113723694 | ENST00000550785 | 17 | 29 | 535_549 | 556.3333333333334 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II |
Top |
Fusion Gene Sequence for SPG11-TPCN1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000261866_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5259nt_BP=1752nt GTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGG TTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGG GGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCT GGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTA TCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATC AAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTAC ATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTG ACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTC ATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTT CTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGAC ACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACA TGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGG AGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGG CCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAA TAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAA GGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTA GTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGAC TCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGG CCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTAT CTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGG AGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGC CCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGT TCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCG GGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGG AGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACA TCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGA TCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCC TTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGC TGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGA AGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCG CCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAA TAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGAC AGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCA GGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCC TCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCC CCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGT GGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGC CCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCA GCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGG AAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAA CAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAG ACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGC AGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTA TGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCC GCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCA CTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTG TCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCA AGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTG TTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTC TCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCAC AATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACC TGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAG TCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCT GTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGC CCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTC TGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAG GGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGC GGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGG >In-frame_ENST00000261866_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=17_stop in transcript=2749 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000261866_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5259nt_BP=1752nt GTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGG TTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGG GGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCT GGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTA TCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATC AAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTAC ATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTG ACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTC ATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTT CTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGAC ACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACA TGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGG AGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGG CCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAA TAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAA GGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTA GTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGAC TCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGG CCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTAT CTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGG AGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGC CCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGT TCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCG GGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGG AGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACA TCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGA TCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCC TTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGC TGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGA AGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCG CCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAA TAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGAC AGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCA GGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCC TCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCC CCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGT GGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGC CCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCA GCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGG AAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAA CAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAG ACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGC AGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTA TGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCC GCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCA CTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTG TCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCA AGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTG TTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTC TCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCAC AATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACC TGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAG TCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCT GTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGC CCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTC TGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAG GGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGC GGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGG >In-frame_ENST00000261866_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=17_stop in transcript=2749 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000261866_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5256nt_BP=1752nt GTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGG TTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGG GGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCT GGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTA TCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATC AAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTAC ATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTG ACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTC ATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTT CTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGAC ACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACA TGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGG AGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGG CCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAA TAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAA GGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTA GTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGAC TCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGG CCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTAT CTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGG AGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGC CCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGT TCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCG GGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGG AGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACA TCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGA TCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCC TTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGC TGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGA AGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCG CCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAA TAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGAC AGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCA GGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCC TCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCC CCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGT GGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGC CCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCA GCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGG AAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAA CAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAG ACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGC AGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTA TGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCC GCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCA CTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTG TCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCA AGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTG TTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTC TCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCAC AATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACC TGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAG TCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCT GTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGC CCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTC TGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAG GGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGC GGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGG >In-frame_ENST00000261866_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=17_stop in transcript=2749 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000261866_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=2868nt_BP=1752nt GTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGG TTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGG GGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCT GGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTA TCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATC AAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTAC ATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTG ACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTC ATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTT CTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGAC ACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACA TGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGG AGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGG CCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAA TAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAA GGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTA GTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGAC TCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGG CCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTAT CTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGG AGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGC CCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGT TCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCG GGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGG AGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACA TCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGA TCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCC TTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGC TGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGA AGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCG CCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAA >In-frame_ENST00000261866_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=17_stop in transcript=2749 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000535302_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5270nt_BP=1763nt AGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGC CATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCC GGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGA GGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTA TGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCT CATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATG TGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGA CATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTAC ATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTC ACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCA ACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTC TGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAA CTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGT GCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAG ATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTG GGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCC TGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTT TTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACA TGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAA ATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCT GGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCT CAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCT GGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGA GTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAG GACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAA CAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGT GGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGG TGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGT CACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGA CCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAG TGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATG CAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGA AGAAAAAAGACAGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGG TGCGGCCACCAGGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCG GGGCTTGCCCCTCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATG GCGTGCCCGCCCCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCG GTCTCCAGGGTGGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGG GGCAACTGGGCCCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAG CCTCCCACCCAGCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGG CATGAGGCAGGAAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCG TTCAAGCAAAACAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAAC AGCACAGAGAGACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAG ATTTCCATAGCAGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTA GGAGCCCTGTATGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTC GCTTTGGTTCCGCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGG CAAGGAGTGCACTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCC CTCTGGCCTTGTCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCC AACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTA GCAGGTGTTTGTTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTG TCCTCTTCCTCTCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAA CTTTATTGCACAATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTG AGTCTCTGACCTGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCT GCCCAGGGGAGTCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATC TGCCCAACCCTGTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCC AGGGTGGGTGCCCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAG GCTGTGAGCTCTGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCA CTGGCGGCCAGGGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTA CTCCACCATGCGGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCAT >In-frame_ENST00000535302_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=28_stop in transcript=2760 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000535302_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5270nt_BP=1763nt AGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGC CATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCC GGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGA GGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTA TGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCT CATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATG TGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGA CATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTAC ATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTC ACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCA ACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTC TGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAA CTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGT GCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAG ATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTG GGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCC TGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTT TTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACA TGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAA ATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCT GGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCT CAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCT GGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGA GTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAG GACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAA CAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGT GGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGG TGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGT CACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGA CCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAG TGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATG CAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGA AGAAAAAAGACAGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGG TGCGGCCACCAGGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCG GGGCTTGCCCCTCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATG GCGTGCCCGCCCCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCG GTCTCCAGGGTGGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGG GGCAACTGGGCCCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAG CCTCCCACCCAGCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGG CATGAGGCAGGAAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCG TTCAAGCAAAACAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAAC AGCACAGAGAGACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAG ATTTCCATAGCAGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTA GGAGCCCTGTATGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTC GCTTTGGTTCCGCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGG CAAGGAGTGCACTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCC CTCTGGCCTTGTCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCC AACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTA GCAGGTGTTTGTTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTG TCCTCTTCCTCTCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAA CTTTATTGCACAATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTG AGTCTCTGACCTGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCT GCCCAGGGGAGTCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATC TGCCCAACCCTGTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCC AGGGTGGGTGCCCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAG GCTGTGAGCTCTGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCA CTGGCGGCCAGGGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTA CTCCACCATGCGGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCAT >In-frame_ENST00000535302_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=28_stop in transcript=2760 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000535302_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5267nt_BP=1763nt AGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGC CATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCC GGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGA GGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTA TGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCT CATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATG TGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGA CATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTAC ATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTC ACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCA ACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTC TGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAA CTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGT GCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAG ATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTG GGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCC TGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTT TTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACA TGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAA ATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCT GGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCT CAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCT GGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGA GTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAG GACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAA CAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGT GGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGG TGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGT CACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGA CCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAG TGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATG CAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGA AGAAAAAAGACAGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGG TGCGGCCACCAGGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCG GGGCTTGCCCCTCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATG GCGTGCCCGCCCCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCG GTCTCCAGGGTGGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGG GGCAACTGGGCCCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAG CCTCCCACCCAGCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGG CATGAGGCAGGAAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCG TTCAAGCAAAACAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAAC AGCACAGAGAGACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAG ATTTCCATAGCAGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTA GGAGCCCTGTATGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTC GCTTTGGTTCCGCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGG CAAGGAGTGCACTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCC CTCTGGCCTTGTCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCC AACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTA GCAGGTGTTTGTTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTG TCCTCTTCCTCTCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAA CTTTATTGCACAATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTG AGTCTCTGACCTGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCT GCCCAGGGGAGTCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATC TGCCCAACCCTGTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCC AGGGTGGGTGCCCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAG GCTGTGAGCTCTGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCA CTGGCGGCCAGGGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTA CTCCACCATGCGGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCAT >In-frame_ENST00000535302_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=28_stop in transcript=2760 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000535302_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=2879nt_BP=1763nt AGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGC CATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCC GGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGA GGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTA TGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCT CATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATG TGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGA CATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTAC ATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTC ACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCA ACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTC TGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAA CTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGT GCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAG ATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTG GGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCC TGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTT TTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACA TGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAA ATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCT GGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCT CAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCT GGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGA GTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAG GACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAA CAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGT GGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGG TGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGT CACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGA CCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAG TGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATG >In-frame_ENST00000535302_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=28_stop in transcript=2760 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000427534_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5242nt_BP=1735nt ATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTACCGATGCTGTTG GTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCCTGACGGCTGCG GGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACTTTCTATGGGAG GATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATGAATTTAATTTG AAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATATCAGTATTTCC TTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTATATTTCCTGAA AGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGCAGCTCTGCAGA GGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGGATTTAGCACTT CACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAGACCTCGATGTT GCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTACTGTGTGAAAGA ATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAACTGGCCAAGTTT TCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTTCCTGTTGTGCT CCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCATTCCACAGGAC ATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGCACATCAGTGAA CAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGGGCTATACCATT ACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAGACCAGCAGCTG TGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGT GCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGATAGAAAATCGT CAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATCAGTTTGATCAC TTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACTTGTCTTCCGGA TGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCATCGTG GTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGCTGCTGCCCCGG ATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCGTCTTCCCCAAC TGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAGGCTACTATTAT CTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCATGGAAGGCGTC ACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTGTCGCCTTTATC CTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGAAGGAAATCTCC AAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGACCCTCTCCCAG ATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGTACCAGGAGGAG ATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCCAGCAGCCCCCA GGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTATTACTCTACTGC GATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGACAGACAAGATGGGGCTTG GTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCAGGTCTGAGCTCTTCCTA CTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCCTCATGTGGGCTGGCCTC CATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCCCCCTCTCCCTGCGGCCC ATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGTGGTATTTCAGTGTCTGT GATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGCCCATGTGGCCAGAGCTC AGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCAGCCTTCTCTGGCTTAAC CCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGGAAGTGGGGCCGATGTCT GCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAACAACGTTTTGGTTAACT AAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAGACGCTCCCTGTGGGACG CAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGCAGGAGCGGTTGGTGCAG AAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTATGACATCTGAGCGTGGT GGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCCGCTTCCCTGGGCCACAG AACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCACTGCTGGGCATTCCTGG CCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTGTCCTCTTCCCAGCCACA GAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCAAGCTGGGTCCC ATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTGTTTTTAAAGCACAGCCC TTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTCTCTGGAGGGCCATGGGC CATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCACAATTGGGTGCCTTTTAG CTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACCTGAGCATCTGGGCCTCG CCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAGTCAAGGCCCCGAGGTGG GGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCTGTCCTGAGAAAGGACCT GGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGCCCTTGTCATTGAGGTTA GGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTCTGTGGGCCCTGGGATGT GATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAGGGGCACAGCCTGGTGGT GGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGCGGACAATCATTTTGTAC GGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGGATTTCTAGCACATTACT >In-frame_ENST00000427534_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=0_stop in transcript=2732 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000427534_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5242nt_BP=1735nt ATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTACCGATGCTGTTG GTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCCTGACGGCTGCG GGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACTTTCTATGGGAG GATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATGAATTTAATTTG AAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATATCAGTATTTCC TTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTATATTTCCTGAA AGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGCAGCTCTGCAGA GGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGGATTTAGCACTT CACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAGACCTCGATGTT GCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTACTGTGTGAAAGA ATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAACTGGCCAAGTTT TCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTTCCTGTTGTGCT CCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCATTCCACAGGAC ATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGCACATCAGTGAA CAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGGGCTATACCATT ACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAGACCAGCAGCTG TGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGT GCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGATAGAAAATCGT CAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATCAGTTTGATCAC TTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACTTGTCTTCCGGA TGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCATCGTG GTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGCTGCTGCCCCGG ATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCGTCTTCCCCAAC TGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAGGCTACTATTAT CTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCATGGAAGGCGTC ACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTGTCGCCTTTATC CTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGAAGGAAATCTCC AAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGACCCTCTCCCAG ATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGTACCAGGAGGAG ATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCCAGCAGCCCCCA GGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTATTACTCTACTGC GATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGACAGACAAGATGGGGCTTG GTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCAGGTCTGAGCTCTTCCTA CTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCCTCATGTGGGCTGGCCTC CATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCCCCCTCTCCCTGCGGCCC ATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGTGGTATTTCAGTGTCTGT GATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGCCCATGTGGCCAGAGCTC AGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCAGCCTTCTCTGGCTTAAC CCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGGAAGTGGGGCCGATGTCT GCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAACAACGTTTTGGTTAACT AAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAGACGCTCCCTGTGGGACG CAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGCAGGAGCGGTTGGTGCAG AAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTATGACATCTGAGCGTGGT GGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCCGCTTCCCTGGGCCACAG AACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCACTGCTGGGCATTCCTGG CCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTGTCCTCTTCCCAGCCACA GAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCAAGCTGGGTCCC ATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTGTTTTTAAAGCACAGCCC TTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTCTCTGGAGGGCCATGGGC CATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCACAATTGGGTGCCTTTTAG CTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACCTGAGCATCTGGGCCTCG CCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAGTCAAGGCCCCGAGGTGG GGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCTGTCCTGAGAAAGGACCT GGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGCCCTTGTCATTGAGGTTA GGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTCTGTGGGCCCTGGGATGT GATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAGGGGCACAGCCTGGTGGT GGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGCGGACAATCATTTTGTAC GGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGGATTTCTAGCACATTACT >In-frame_ENST00000427534_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=0_stop in transcript=2732 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000427534_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5239nt_BP=1735nt ATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTACCGATGCTGTTG GTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCCTGACGGCTGCG GGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACTTTCTATGGGAG GATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATGAATTTAATTTG AAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATATCAGTATTTCC TTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTATATTTCCTGAA AGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGCAGCTCTGCAGA GGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGGATTTAGCACTT CACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAGACCTCGATGTT GCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTACTGTGTGAAAGA ATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAACTGGCCAAGTTT TCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTTCCTGTTGTGCT CCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCATTCCACAGGAC ATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGCACATCAGTGAA CAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGGGCTATACCATT ACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAGACCAGCAGCTG TGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGT GCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGATAGAAAATCGT CAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATCAGTTTGATCAC TTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACTTGTCTTCCGGA TGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCATCGTG GTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGCTGCTGCCCCGG ATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCGTCTTCCCCAAC TGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAGGCTACTATTAT CTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCATGGAAGGCGTC ACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTGTCGCCTTTATC CTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGAAGGAAATCTCC AAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGACCCTCTCCCAG ATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGTACCAGGAGGAG ATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCCAGCAGCCCCCA GGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTATTACTCTACTGC GATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGACAGACAAGATGGGGCTTG GTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCAGGTCTGAGCTCTTCCTA CTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCCTCATGTGGGCTGGCCTC CATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCCCCCTCTCCCTGCGGCCC ATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGTGGTATTTCAGTGTCTGT GATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGCCCATGTGGCCAGAGCTC AGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCAGCCTTCTCTGGCTTAAC CCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGGAAGTGGGGCCGATGTCT GCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAACAACGTTTTGGTTAACT AAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAGACGCTCCCTGTGGGACG CAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGCAGGAGCGGTTGGTGCAG AAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTATGACATCTGAGCGTGGT GGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCCGCTTCCCTGGGCCACAG AACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCACTGCTGGGCATTCCTGG CCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTGTCCTCTTCCCAGCCACA GAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCAAGCTGGGTCCC ATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTGTTTTTAAAGCACAGCCC TTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTCTCTGGAGGGCCATGGGC CATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCACAATTGGGTGCCTTTTAG CTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACCTGAGCATCTGGGCCTCG CCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAGTCAAGGCCCCGAGGTGG GGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCTGTCCTGAGAAAGGACCT GGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGCCCTTGTCATTGAGGTTA GGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTCTGTGGGCCCTGGGATGT GATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAGGGGCACAGCCTGGTGGT GGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGCGGACAATCATTTTGTAC GGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGGATTTCTAGCACATTACT >In-frame_ENST00000427534_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=0_stop in transcript=2732 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000427534_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=2851nt_BP=1735nt ATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTACCGATGCTGTTG GTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCCTGACGGCTGCG GGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACTTTCTATGGGAG GATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATGAATTTAATTTG AAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATATCAGTATTTCC TTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTATATTTCCTGAA AGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGCAGCTCTGCAGA GGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGGATTTAGCACTT CACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAGACCTCGATGTT GCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTACTGTGTGAAAGA ATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAACTGGCCAAGTTT TCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTTCCTGTTGTGCT CCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCATTCCACAGGAC ATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGCACATCAGTGAA CAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGGGCTATACCATT ACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAGACCAGCAGCTG TGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGT GCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGATAGAAAATCGT CAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATCAGTTTGATCAC TTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACTTGTCTTCCGGA TGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCATCGTG GTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGCTGCTGCCCCGG ATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCGTCTTCCCCAAC TGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAGGCTACTATTAT CTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCATGGAAGGCGTC ACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTGTCGCCTTTATC CTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGAAGGAAATCTCC AAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGACCCTCTCCCAG ATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGTACCAGGAGGAG ATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCCAGCAGCCCCCA GGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTATTACTCTACTGC >In-frame_ENST00000427534_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=0_stop in transcript=2732 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000558319_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5273nt_BP=1766nt GAAAGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGC GGCCATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACA GCCGGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCT GGAGGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAA TTATGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAA GCTCATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAA ATGTGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGT GGACATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGG TACATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTAC TTCACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAG GCAACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAA CTCTGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAA GAACTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAG TGTGCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGG AAGATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTAC TTGGGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTAT TCCTGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGA GTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCAT ACATGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTC AAAATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGG CCTGGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGC CCTCAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGT GCTGGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCAT GGAGTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAA CAGGACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGT CAACAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCAT GGTGGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGA TGGTGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGA TGTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAG CGACCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAG CAGTGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCT ATGCAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACA GGAAGAAAAAAGACAGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGG GGGTGCGGCCACCAGGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACT GCGGGGCTTGCCCCTCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTG ATGGCGTGCCCGCCCCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTC CCGGTCTCCAGGGTGGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAAT TGGGGCAACTGGGCCCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGC AAGCCTCCCACCCAGCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAG GGGCATGAGGCAGGAAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTAC CCGTTCAAGCAAAACAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCG AACAGCACAGAGAGACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCA GAGATTTCCATAGCAGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCT GTAGGAGCCCTGTATGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAG GTCGCTTTGGTTCCGCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAA GGGCAAGGAGTGCACTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCC TCCCTCTGGCCTTGTCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCT CCCAACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAA GTAGCAGGTGTTTGTTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCT TTGTCCTCTTCCTCTCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGG GAACTTTATTGCACAATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGT GTGAGTCTCTGACCTGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGG TCTGCCCAGGGGAGTCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCC ATCTGCCCAACCCTGTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCA GCCAGGGTGGGTGCCCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCA CAGGCTGTGAGCTCTGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCAC CCACTGGCGGCCAGGGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCC TTACTCCACCATGCGGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACC >In-frame_ENST00000558319_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=31_stop in transcript=2763 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000558319_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5273nt_BP=1766nt GAAAGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGC GGCCATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACA GCCGGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCT GGAGGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAA TTATGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAA GCTCATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAA ATGTGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGT GGACATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGG TACATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTAC TTCACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAG GCAACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAA CTCTGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAA GAACTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAG TGTGCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGG AAGATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTAC TTGGGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTAT TCCTGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGA GTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCAT ACATGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTC AAAATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGG CCTGGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGC CCTCAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGT GCTGGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCAT GGAGTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAA CAGGACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGT CAACAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCAT GGTGGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGA TGGTGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGA TGTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAG CGACCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAG CAGTGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCT ATGCAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACA GGAAGAAAAAAGACAGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGG GGGTGCGGCCACCAGGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACT GCGGGGCTTGCCCCTCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTG ATGGCGTGCCCGCCCCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTC CCGGTCTCCAGGGTGGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAAT TGGGGCAACTGGGCCCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGC AAGCCTCCCACCCAGCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAG GGGCATGAGGCAGGAAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTAC CCGTTCAAGCAAAACAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCG AACAGCACAGAGAGACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCA GAGATTTCCATAGCAGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCT GTAGGAGCCCTGTATGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAG GTCGCTTTGGTTCCGCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAA GGGCAAGGAGTGCACTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCC TCCCTCTGGCCTTGTCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCT CCCAACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAA GTAGCAGGTGTTTGTTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCT TTGTCCTCTTCCTCTCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGG GAACTTTATTGCACAATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGT GTGAGTCTCTGACCTGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGG TCTGCCCAGGGGAGTCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCC ATCTGCCCAACCCTGTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCA GCCAGGGTGGGTGCCCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCA CAGGCTGTGAGCTCTGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCAC CCACTGGCGGCCAGGGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCC TTACTCCACCATGCGGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACC >In-frame_ENST00000558319_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=31_stop in transcript=2763 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000558319_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5270nt_BP=1766nt GAAAGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGC GGCCATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACA GCCGGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCT GGAGGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAA TTATGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAA GCTCATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAA ATGTGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGT GGACATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGG TACATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTAC TTCACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAG GCAACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAA CTCTGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAA GAACTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAG TGTGCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGG AAGATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTAC TTGGGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTAT TCCTGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGA GTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCAT ACATGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTC AAAATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGG CCTGGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGC CCTCAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGT GCTGGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCAT GGAGTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAA CAGGACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGT CAACAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCAT GGTGGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGA TGGTGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGA TGTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAG CGACCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAG CAGTGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCT ATGCAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACA GGAAGAAAAAAGACAGACAAGATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGG GGGTGCGGCCACCAGGTCTGAGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACT GCGGGGCTTGCCCCTCATGTGGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTG ATGGCGTGCCCGCCCCCTCTCCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTC CCGGTCTCCAGGGTGGTATTTCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAAT TGGGGCAACTGGGCCCATGTGGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGC AAGCCTCCCACCCAGCCTTCTCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAG GGGCATGAGGCAGGAAGTGGGGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTAC CCGTTCAAGCAAAACAACGTTTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCG AACAGCACAGAGAGACGCTCCCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCA GAGATTTCCATAGCAGGAGCGGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCT GTAGGAGCCCTGTATGACATCTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAG GTCGCTTTGGTTCCGCTTCCCTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAA GGGCAAGGAGTGCACTGCTGGGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCC TCCCTCTGGCCTTGTCCTCTTCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCT CCCAACCACCTCCAAGGCCAAGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAA GTAGCAGGTGTTTGTTTTTAAAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCT TTGTCCTCTTCCTCTCTGGAGGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGG GAACTTTATTGCACAATTGGGTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGT GTGAGTCTCTGACCTGAGCATCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGG TCTGCCCAGGGGAGTCAAGGCCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCC ATCTGCCCAACCCTGTCCTGAGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCA GCCAGGGTGGGTGCCCTTGTCATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCA CAGGCTGTGAGCTCTGTGGGCCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCAC CCACTGGCGGCCAGGGGCACAGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCC TTACTCCACCATGCGGACAATCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACC >In-frame_ENST00000558319_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=31_stop in transcript=2763 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000558319_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=2882nt_BP=1766nt GAAAGTGACCGGAAGTAACCGCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGC GGCCATGGGGCGGGTTCTACCGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACA GCCGGAGGCTCTGGGGAGCCTGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCT GGAGGGCCCCTTCTGGCACTTTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAA TTATGAACTGCTTATCTATGAATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAA GCTCATTGACGATCAAGATATCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAA ATGTGTCATCCTACATATTATATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGT GGACATGATTATTGACACGCAGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGG TACATATGTAGCTCATGTGGATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTAC TTCACTGAAAGTTTCTCAAGACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAG GCAACACCCAGGACACCTACTGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAA CTCTGCCTACAACATGAAACTGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAA GAACTCCAAACTGGAGGTTTCCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAG TGTGCAGAGCTGGGCCTTCATTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGG AAGATCATGGAAAATAATGCACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTAC TTGGGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTAT TCCTGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGA GTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCAT ACATGCACTAGAGGCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTC AAAATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGG CCTGGGCCCTGTGGAGTACTTGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGC CCTCAACATGGAGCCCTTCTATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGT GCTGGACACCATGTTCGAGCTGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCAT GGAGTTCTTCTGCGGGATCGTCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAA CAGGACCGTGGTGGAGGAAGGCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGT CAACAACTGGTACATCATCATGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCAT GGTGGTGATGACGATCATTGTCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGA TGGTGGCATCACCCTTGAGAAGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGA TGTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAG CGACCTGAGCCTGAAGATGTACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAG CAGTGCAGCCCCCGCCGCCCAGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCT ATGCAATAACACAATAGTATTACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACA >In-frame_ENST00000558319_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=31_stop in transcript=2763 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000559193_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5253nt_BP=1746nt GCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTAC CGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCC TGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACT TTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATG AATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATA TCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTA TATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGC AGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGG ATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAG ACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTAC TGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAAC TGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTT CCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCA TTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGC ACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGG GCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAG ACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGA TCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGA TAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATC AGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACT TGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCT ATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGC TGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCG TCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAG GCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCA TGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTG TCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGA AGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGA CCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGT ACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCC AGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTAT TACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGACAGACAA GATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCAGGTCTG AGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCCTCATGT GGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCCCCCTCT CCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGTGGTATT TCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGCCCATGT GGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCAGCCTTC TCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGGAAGTGG GGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAACAACGT TTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAGACGCTC CCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGCAGGAGC GGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTATGACAT CTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCCGCTTCC CTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCACTGCTG GGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTGTCCTCT TCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCA AGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTGTTTTTA AAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTCTCTGGA GGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCACAATTGG GTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACCTGAGCA TCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAGTCAAGG CCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCTGTCCTG AGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGCCCTTGT CATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTCTGTGGG CCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAGGGGCAC AGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGCGGACAA TCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGGATTTCT >In-frame_ENST00000559193_ENST00000335509_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=11_stop in transcript=2743 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000559193_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5253nt_BP=1746nt GCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTAC CGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCC TGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACT TTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATG AATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATA TCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTA TATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGC AGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGG ATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAG ACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTAC TGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAAC TGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTT CCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCA TTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGC ACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGG GCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAG ACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGA TCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGA TAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATC AGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACT TGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCT ATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGC TGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCG TCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAG GCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCA TGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTG TCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGA AGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGA CCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGT ACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCC AGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTAT TACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGACAGACAA GATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCAGGTCTG AGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCCTCATGT GGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCCCCCTCT CCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGTGGTATT TCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGCCCATGT GGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCAGCCTTC TCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGGAAGTGG GGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAACAACGT TTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAGACGCTC CCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGCAGGAGC GGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTATGACAT CTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCCGCTTCC CTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCACTGCTG GGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTGTCCTCT TCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCA AGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTGTTTTTA AAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTCTCTGGA GGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCACAATTGG GTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACCTGAGCA TCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAGTCAAGG CCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCTGTCCTG AGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGCCCTTGT CATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTCTGTGGG CCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAGGGGCAC AGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGCGGACAA TCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGGATTTCT >In-frame_ENST00000559193_ENST00000550785_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=11_stop in transcript=2743 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000559193_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=5250nt_BP=1746nt GCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTAC CGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCC TGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACT TTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATG AATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATA TCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTA TATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGC AGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGG ATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAG ACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTAC TGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAAC TGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTT CCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCA TTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGC ACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGG GCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAG ACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGA TCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGA TAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATC AGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACT TGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCT ATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGC TGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCG TCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAG GCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCA TGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTG TCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGA AGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGA CCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGT ACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCC AGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTAT TACTCTACTGCGATGTACGGAACTGCGGTGTGTGTACACATACTCACGTATATGCACATATTTATATACAGGAAGAAAAAAGACAGACAA GATGGGGCTTGGTTTATAACCACCTTGCCCTGTCTTCCTTAACTCCAGAAGCCAGTTTGGTGAGGGGTGGGGGTGCGGCCACCAGGTCTG AGCTCTTCCTACTGTGGAAGGCTCCAGAAGGCCCTTCACAAGGAGACCCCTCACCTGGATCCAGTCGACTGCGGGGCTTGCCCCTCATGT GGGCTGGCCTCCATCGGCCACGTCCAAAGCTGTCACTGCTACTGCTTCAGGCTCACATCCCCCCGACCTGATGGCGTGCCCGCCCCCTCT CCCTGCGGCCCATGCCACAGGTTTCTGTGTTTTGCTTTAGGGACAGAACCACTTAGGAAGGAAAGAACTCCCGGTCTCCAGGGTGGTATT TCAGTGTCTGTGATAATGTCACGCAACACCTCTTCGGGGACCAGTGCCCAGGATCTAATGGAAGCGGAATTGGGGCAACTGGGCCCATGT GGCCAGAGCTCAGTTAGCCAGTGCCGGGCGGCCACAGATTACACTGACCAATCTCCTCCCTTGGCTCTGCAAGCCTCCCACCCAGCCTTC TCTGGCTTAACCCTTGTTGGCGAAAACTCTTCCACAGTGGCCTCCTTGGGGACCCAGAACCCGGAGGAAGGGGCATGAGGCAGGAAGTGG GGCCGATGTCTGCAACCCAGACCACTTCGTGGAATGGGCTCTTGACCAAATCCCTTTTTTTGCGATTTACCCGTTCAAGCAAAACAACGT TTTGGTTAACTAAGGATTGTGCTAAAGCCGATACCAGGTCCTTCACACGTGTGCACTAGGAACAGGAGCGAACAGCACAGAGAGACGCTC CCTGTGGGACGCAGCAGCCCCGTGGCCCCGGCCCAGTTCCCAGCCACCCTCCCTGGCTCTGCTCACACCAGAGATTTCCATAGCAGGAGC GGTTGGTGCAGAAGTAGGTTCAGATGAACCTCAGTTAACGTCGCCACCCCTCCTCCCACCATGGTACCCTGTAGGAGCCCTGTATGACAT CTGAGCGTGGTGGAGGTAGGAGGGTTGCCAGCTGCAGTGACCCTGCCACAGAGGCAGGGTCAGTGCAGAGGTCGCTTTGGTTCCGCTTCC CTGGGCCACAGAACGGAACACAGCATAGGTTCTGCAGCAGGAGCCGCAGTGGCAGGATGGAGGGTGCGAAGGGCAAGGAGTGCACTGCTG GGCATTCCTGGCCAGCCCCGGCCCTCTGGTGCCTGCTTCCTGTGACTTCAGAAGGCAGGTGGACAGAGCCTCCCTCTGGCCTTGTCCTCT TCCCAGCCACAGAACGGGCAGGGTGGCACCCGACCCCAGGGGAGCAGTACCTGGTCCCCCACCCCCTCCTCCCAACCACCTCCAAGGCCA AGCTGGGTCCCATAGCCAGCACGGCATGGTTCTCCCCTTCCCCCCTTCCCAGGTCAGGGGAGTTGGACAAGTAGCAGGTGTTTGTTTTTA AAGCACAGCCCTTTGGGAAAGCAACACATTATTGAGACTCACTGTGATTCCCCCGGGAGTCAGACTGGCTTTGTCCTCTTCCTCTCTGGA GGGCCATGGGCCATCAGCAGGAGCTCCACATCGAGCCCCAGGCCAGAACCCCCTCCCTTTCACAGAGAGGGAACTTTATTGCACAATTGG GTGCCTTTTAGCTTTTGTGTGTTGAAATGGGCGTTTTGGAAGCAAGGGTCAGGGGACAGCTTCTAAAGGTGTGAGTCTCTGACCTGAGCA TCTGGGCCTCGCCTGGGCCCTTCTTCCTCCCCAGGGGTGGAAACGTGGAGGGGCCAGCAGCACCCCGGGGTCTGCCCAGGGGAGTCAAGG CCCCGAGGTGGGGGGGCCTATTCCAGGAGGAGTGGGATCTCGGCCCTGTCCAGAGCGAGTTAATGTGTCCATCTGCCCAACCCTGTCCTG AGAAAGGACCTGGTTTTGGCCAGGACCTGACAAATACCCAATGGCAGCAGTGTCAACAGACGGGAGTCCAGCCAGGGTGGGTGCCCTTGT CATTGAGGTTAGGGACAGCTATCCCCAGGTTATGCCTGGCCCCACCCAGCAGGGAGTTGGGGTCCCCCCACAGGCTGTGAGCTCTGTGGG CCCTGGGATGTGATCTAGCTCAGATGCCCTCTCATCCTTGATGTCATAGTTGAGTGCACCCAAGTGGCACCCACTGGCGGCCAGGGGCAC AGCCTGGTGGTGGTGGCAATAGAACTGTGCCCCTCCTCAGCTCCTCGCTTCCCCTCCCACAGCCCCAGCCTTACTCCACCATGCGGACAA TCATTTTGTACGGATCACGGGAGCAATGCTGTACGGTTTTGTACACTGGTGGTTTGTTTCCTAGAAAACCCATTGTGTCTCTGGATTTCT >In-frame_ENST00000559193_ENST00000541517_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=11_stop in transcript=2743 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- >In-frame_ENST00000559193_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(transcript)=2862nt_BP=1746nt GCCGGGCCAAGATGGCTGCAGAGGAAGGGGTCGCGAGTGCTGCTTCCGCCGGCGGTAGCTGGGGCACCGCGGCCATGGGGCGGGTTCTAC CGATGCTGTTGGTGCCAGTCCCCGCCGAGGCGATGGGGCAGCTCGGCTCCCGGGCGCAGCTGCGCACACAGCCGGAGGCTCTGGGGAGCC TGACGGCTGCGGGCAGCCTCCAAGTGCTTTCTTTGACGCCTGGCAGCCGGGGCGGGGGTCGCTGCTGCCTGGAGGGCCCCTTCTGGCACT TTCTATGGGAGGATTCTCGTAACAGCAGCACACCAACTGAAAAGCCCAAACTGCTCGCTCTTGGTGAAAATTATGAACTGCTTATCTATG AATTTAATTTGAAAGATGGAAGATGTGATGCAACCATTTTGTATAGCTGTAGTAGGGAGGCATTGCAAAAGCTCATTGACGATCAAGATA TCAGTATTTCCTTATTGTCTTTGAGAATCCTGTCATTTCACAATAACACATCATTACTGTTCATCAACAAATGTGTCATCCTACATATTA TATTTCCTGAAAGAGATGCTGCAATTAGAGTACTCAACTGTTTCACACTTCCCTTGCCTGCACAGGCAGTGGACATGATTATTGACACGC AGCTCTGCAGAGGAATTCTTTTTGTTTTGAGTAGTTTAGGCTGGATCTACATTTTTGATGTTGTGGATGGTACATATGTAGCTCATGTGG ATTTAGCACTTCACAAAGAAGACATGTGTAATGAGCAGCAACAGGAGCCAGCCAAGATTTCTTCATTTACTTCACTGAAAGTTTCTCAAG ACCTCGATGTTGCAGTGATTGTCAGCTCCTCCAACTCCGCAGTTGCTCTTAACTTAAATTTGTATTTCAGGCAACACCCAGGACACCTAC TGTGTGAAAGAATACTAGAAGATCTTCCTATTCAAGGACCTAAGGGCGTAGATGAAGATGATCCTGTTAACTCTGCCTACAACATGAAAC TGGCCAAGTTTTCCTTCCAAATTGATAGGTCTTGGAAAGCCCAGCTATCATCATTGAATGAAACAATAAAGAACTCCAAACTGGAGGTTT CCTGTTGTGCTCCATGGTTCCAGGATATTTTGCATTTGGAGTCACCTGAATCTGGTAACCACAGTACAAGTGTGCAGAGCTGGGCCTTCA TTCCACAGGACATAATGCATGGGCAATATAATGTTCTACAGAAAGATCATGCCAAGACCAGTGATCCAGGAAGATCATGGAAAATAATGC ACATCAGTGAACAAGAGGAACCCATAGAGCTTAAATGTGTGTCTGTGACAGGATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGG GCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTTTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAG ACCAGCAGCTGTGCTTTGTTTTGACAGAGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGA TCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAGGCCGGGA TAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATC AGTTTGATCACTTGTCATCCCATTTATATTTAAGAATCTATGGGGTGGAGCTGTTCCTGAAGGTTGCCGGCCTGGGCCCTGTGGAGTACT TGTCTTCCGGATGGAACTTGTTTGACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCT ATTTCATCGTGGTCCTGCGCCCCCTCCAGCTGCTGAGGTTGTTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCATGTTCGAGC TGCTGCCCCGGATGGCCAGCCTGGGCCTCACCCTGCTCATCTTTTACTACTCCTTCGCCATCGTGGGCATGGAGTTCTTCTGCGGGATCG TCTTCCCCAACTGCTGCAACACGAGTACAGTGGCAGATGCCTACCGCTGGCGCAACCACACCGTGGGCAACAGGACCGTGGTGGAGGAAG GCTACTATTATCTCAATAATTTTGACAACATCCTCAACAGCTTTGTGACCCTGTTTGAGCTCACAGTTGTCAACAACTGGTACATCATCA TGGAAGGCGTCACCTCTCAGACCTCCCACTGGAGCCGCCTCTACTTCATGACCTTTTACATTGTGACCATGGTGGTGATGACGATCATTG TCGCCTTTATCCTCGAGGCCTTCGTCTTCCGAATGAACTACAGCCGCAAGAACCAGGACTCGGAAGTTGATGGTGGCATCACCCTTGAGA AGGAAATCTCCAAAGAAGAGCTGGTTGCCGTCCTGGAGCTCTACCGGGAGGCACGGGGGGCCTCCTCGGATGTCACCAGGCTGCTGGAGA CCCTCTCCCAGATGGAGAGATACCAGCAACATTCCATGGTGTTTCTGGGACGGCGATCAAGGACCAAGAGCGACCTGAGCCTGAAGATGT ACCAGGAGGAGATCCAGGAGTGGTATGAGGAGCATGCCAGGGAGCAAGAGCAGCAGCGACAACTCAGCAGCAGTGCAGCCCCCGCCGCCC AGCAGCCCCCAGGCAGCCGCCAGCGCTCCCAGACCGTTACCTAGCCCAGCGCCCGAAAGCCGTCTCTTCTATGCAATAACACAATAGTAT >In-frame_ENST00000559193_ENST00000392569_TCGA-BR-8080-01A_SPG11_chr15_44925703_-_TPCN1_chr12_113723694_length(amino acids)=910AA_start in transcript=11_stop in transcript=2743 MAAEEGVASAASAGGSWGTAAMGRVLPMLLVPVPAEAMGQLGSRAQLRTQPEALGSLTAAGSLQVLSLTPGSRGGGRCCLEGPFWHFLWE DSRNSSTPTEKPKLLALGENYELLIYEFNLKDGRCDATILYSCSREALQKLIDDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLALHKEDMCNEQQQEPAKISSFTSLKVSQDLDV AVIVSSSNSAVALNLNLYFRQHPGHLLCERILEDLPIQGPKGVDEDDPVNSAYNMKLAKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCA PWFQDILHLESPESGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISEQEEPIELKCVSVTGFTALFTWEVERMGYTI TLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRIYGVELFLKVAGLGPVEYLSSGWNLFDFSVTVFAFLGLLALALNMEPFYFIV VLRPLQLLRLFKLKERYRNVLDTMFELLPRMASLGLTLLIFYYSFAIVGMEFFCGIVFPNCCNTSTVADAYRWRNHTVGNRTVVEEGYYY LNNFDNILNSFVTLFELTVVNNWYIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKNQDSEVDGGITLEKEIS KEELVAVLELYREARGASSDVTRLLETLSQMERYQQHSMVFLGRRSRTKSDLSLKMYQEEIQEWYEEHAREQEQQRQLSSSAAPAAQQPP -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for SPG11-TPCN1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for SPG11-TPCN1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for SPG11-TPCN1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SPG11 | C1858479 | Spastic paraplegia 11, autosomal recessive | 8 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | SPG11 | C3468114 | Juvenile amyotrophic lateral sclerosis | 3 | ORPHANET |
Hgene | SPG11 | C4225253 | CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2X | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
Hgene | SPG11 | C1865864 | AMYOTROPHIC LATERAL SCLEROSIS 5 | 2 | CTD_human;GENOMICS_ENGLAND |
Hgene | SPG11 | C2931821 | Nakamura Osame syndrome | 2 | ORPHANET |
Hgene | SPG11 | C0598589 | Inherited neuropathies | 1 | GENOMICS_ENGLAND |
Tgene | TPCN1 | C0028960 | Oligospermia | 1 | CTD_human |