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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SS18-SSX1 (FusionGDB2 ID:86072)

Fusion Gene Summary for SS18-SSX1

check button Fusion gene summary
Fusion gene informationFusion gene name: SS18-SSX1
Fusion gene ID: 86072
HgeneTgene
Gene symbol

SS18

SSX1

Gene ID

6760

6756

Gene nameSS18 subunit of BAF chromatin remodeling complexSSX family member 1
SynonymsSSXT|SYTCT5.1|SSRC
Cytomap

18q11.2

Xp11.23

Type of geneprotein-codingprotein-coding
Descriptionprotein SSXTSS18, nBAF chromatin remodeling complex subunitsynovial sarcoma translocated to X chromosome proteinsynovial sarcoma translocation, chromosome 18synovial sarcoma, translocated to X chromosomeprotein SSX1cancer/testis antigen 5.1cancer/testis antigen family 5, member 1sarcoma, synovial, X-chromosome-related 1synovial sarcoma, X breakpoint 1
Modification date2020032920200313
UniProtAcc.

Q16384

Ensembl transtripts involved in fusion geneENST00000415083, ENST00000542420, 
ENST00000542743, ENST00000539849, 
ENST00000269137, ENST00000545952, 
ENST00000585241, 		ENST00000376919, 
Fusion gene scores* DoF score24 X 33 X 8=63364 X 10 X 3=120
# samples 389
** MAII scorelog2(38/6336*10)=-4.05950101174866
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(9/120*10)=-0.415037499278844
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SS18 [Title/Abstract] AND SSX1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSS18(23612363)-SSX1(48123217), # samples:7
SSX1(48121826)-SS18(23610363), # samples:1
Anticipated loss of major functional domain due to fusion event.SS18-SSX1 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF.
SS18-SSX1 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSS18

GO:0045944

positive regulation of transcription by RNA polymerase II

15919756


check buttonFusion gene breakpoints across SS18 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SSX1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SARCTCGA-DX-AB3B-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChimerDB4SARCTCGA-MJ-A850-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChimerDB4SARCTCGA-X6-A8C7-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChimerDB4SARCTCGA-X6-A8C7SS18chr18

23612362

-SSX1chrX

48123216

+
ChimerDB4SARCTCGA-FX-A8OOSS18chr18

23612362

-SSX1chrX

48123216

+
ChimerDB4SARCTCGA-DX-A7ERSS18chr18

23612362

-SSX1chrX

48123216

+
ChimerDB4SARCTCGA-MJ-A850SS18chr18

23612362

-SSX1chrX

48123216

+
ChimerDB4SARCTCGA-DX-A7EOSS18chr18

23612362

-SSX1chrX

48123216

+
ChimerDB4SARCTCGA-X6-A8C7-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChimerDB4SARCTCGA-DX-AB3B-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChimerDB4SARCTCGA-MJ-A850-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChimerDB4SARCTCGA-X6-A8C7-01ASS18chr18

23612363

-SSX1chrX

48123217

+
ChiTaRS5.0N/AAB300354SS18chr18

23612363

-SSX1chrX

48123215

+
ChiTaRS5.0N/AAB300355SS18chr18

23612363

-SSX1chrX

48123215

+
ChiTaRS5.0N/AAF402618SS18chr18

23603577

-SSX1chrX

48123278

+
ChiTaRS5.0N/AAF404831SS18chr18

23610422

-SSX1chrX

48121902

+
ChiTaRS5.0N/AAY138487SS18chr18

23320134

-SSX1chrX

48121364

+
ChiTaRS5.0N/AS79325SS18chr18

23612363

-SSX1chrX

48123215

+


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Fusion Gene ORF analysis for SS18-SSX1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000415083ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
Frame-shiftENST00000542420ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
Frame-shiftENST00000542743ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
Frame-shiftENST00000539849ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
In-frameENST00000269137ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
In-frameENST00000545952ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23612363

-SSX1chrX

48123217

+
In-frameENST00000415083ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
Frame-shiftENST00000542420ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
Frame-shiftENST00000542743ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
Frame-shiftENST00000539849ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
In-frameENST00000269137ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
In-frameENST00000545952ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23612362

-SSX1chrX

48123216

+
In-frameENST00000415083ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
Frame-shiftENST00000542420ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
Frame-shiftENST00000542743ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
Frame-shiftENST00000539849ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
In-frameENST00000269137ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
In-frameENST00000545952ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23612363

-SSX1chrX

48123215

+
intron-3CDSENST00000415083ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-3CDSENST00000542420ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-3CDSENST00000542743ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-3CDSENST00000539849ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-3CDSENST00000269137ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-3CDSENST00000545952ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23603577

-SSX1chrX

48123278

+
intron-intronENST00000415083ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000542420ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000542743ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000539849ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000269137ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000545952ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000585241ENST00000376919SS18chr18

23610422

-SSX1chrX

48121902

+
intron-intronENST00000415083ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
intron-intronENST00000542420ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
intron-intronENST00000542743ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
intron-intronENST00000539849ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
intron-intronENST00000269137ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
intron-intronENST00000545952ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
intron-intronENST00000585241ENST00000376919SS18chr18

23320134

-SSX1chrX

48121364

+
Frame-shiftENST00000269137ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
Frame-shiftENST00000415083ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
Frame-shiftENST00000539849ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
Frame-shiftENST00000542420ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
Frame-shiftENST00000542743ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
Frame-shiftENST00000542743ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
Frame-shiftENST00000545952ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
In-frameENST00000269137ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
In-frameENST00000415083ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
In-frameENST00000539849ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
In-frameENST00000542420ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
In-frameENST00000545952ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
intron-3CDSENST00000269137ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000269137ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000269137ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+
intron-3CDSENST00000415083ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000415083ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000415083ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+
intron-3CDSENST00000539849ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000539849ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000539849ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+
intron-3CDSENST00000542420ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000542420ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000542420ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+
intron-3CDSENST00000542743ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000542743ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000542743ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+
intron-3CDSENST00000545952ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000545952ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000545952ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23612362

-SSX1chrX

48121200

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23612362

-SSX1chrX

48123278

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23615029

-SSX1chrX

48123278

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23615074

-SSX1chrX

48123215

+
intron-3CDSENST00000585241ENST00000376919SS18chr18

23670542

-SSX1chrX

48123215

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000415083SS18chr1823612363-ENST00000376919SSX1chrX48123217+21181286561522488
ENST00000269137SS18chr1823612363-ENST00000376919SSX1chrX48123217+230114691611705514
ENST00000545952SS18chr1823612363-ENST00000376919SSX1chrX48123217+211612843031520405
ENST00000415083SS18chr1823612362-ENST00000376919SSX1chrX48123216+21181286561522488
ENST00000269137SS18chr1823612362-ENST00000376919SSX1chrX48123216+230114691611705514
ENST00000545952SS18chr1823612362-ENST00000376919SSX1chrX48123216+211612843031520405
ENST00000415083SS18chr1823612363-ENST00000376919SSX1chrX48123215+21181286561522488
ENST00000269137SS18chr1823612363-ENST00000376919SSX1chrX48123215+230114691611705514
ENST00000545952SS18chr1823612363-ENST00000376919SSX1chrX48123215+211612843031520405

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000415083ENST00000376919SS18chr1823612363-SSX1chrX48123217+0.0023013250.9976987
ENST00000269137ENST00000376919SS18chr1823612363-SSX1chrX48123217+0.0027727260.99722725
ENST00000545952ENST00000376919SS18chr1823612363-SSX1chrX48123217+0.0011157620.99888426
ENST00000415083ENST00000376919SS18chr1823612362-SSX1chrX48123216+0.0023013250.9976987
ENST00000269137ENST00000376919SS18chr1823612362-SSX1chrX48123216+0.0027727260.99722725
ENST00000545952ENST00000376919SS18chr1823612362-SSX1chrX48123216+0.0011157620.99888426
ENST00000415083ENST00000376919SS18chr1823612363-SSX1chrX48123215+0.0023013250.9976987
ENST00000269137ENST00000376919SS18chr1823612363-SSX1chrX48123215+0.0027727260.99722725
ENST00000545952ENST00000376919SS18chr1823612363-SSX1chrX48123215+0.0011157620.99888426

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Fusion Genomic Features for SS18-SSX1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
SS18chr1823612362-SSX1chrX48123216+1.68E-070.9999999
SS18chr1823612362-SSX1chrX48123216+1.68E-070.9999999
SS18chr1823612362-SSX1chrX48123216+1.68E-070.9999999
SS18chr1823612362-SSX1chrX48123216+1.68E-070.9999999
SS18chr1823612362-SSX1chrX48123216+1.68E-070.9999999
SS18chr1823612362-SSX1chrX48123216+1.68E-070.9999999

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SS18-SSX1


check button Go to

FGviewer for the breakpoints of chr18:23612363-chrX:48123217

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.SSX1

Q16384

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Could act as a modulator of transcription.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-91095_99379.0388.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-101195_99410.0419.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-91095_99379.0388.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-101195_99410.0419.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-91095_99379.0388.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-101195_99410.0419.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910374_377379.0388.0MotifSH2-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-91050_53379.0388.0MotifSH2-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011374_377410.0419.0MotifSH2-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011392_401410.0419.0MotifSH3-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-101150_53410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910374_377379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-91050_53379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011374_377410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011392_401410.0419.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-101150_53410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910374_377379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-91050_53379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011374_377410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011392_401410.0419.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-101150_53410.0419.0MotifSH2-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-9102_186379.0388.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910344_369379.0388.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-10112_186410.0419.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011344_369410.0419.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-9102_186379.0388.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910344_369379.0388.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-10112_186410.0419.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011344_369410.0419.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-9102_186379.0388.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910344_369379.0388.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-10112_186410.0419.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011344_369410.0419.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910344_356379.0388.0RepeatNote=1
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910357_369379.0388.0RepeatNote=2
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011344_356410.0419.0RepeatNote=1
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011357_369410.0419.0RepeatNote=2
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910344_356379.0388.0RepeatNote=1
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910357_369379.0388.0RepeatNote=2
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011344_356410.0419.0RepeatNote=1
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011357_369410.0419.0RepeatNote=2
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910344_356379.0388.0RepeatNote=1
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910357_369379.0388.0RepeatNote=2
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011344_356410.0419.0RepeatNote=1
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011357_369410.0419.0RepeatNote=2

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910175_418379.0388.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011175_418410.0419.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910175_418379.0388.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011175_418410.0419.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910175_418379.0388.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011175_418410.0419.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910392_401379.0388.0MotifSH3-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000269137-910413_416379.0388.0MotifSH2-binding
HgeneSS18chr18:23612362chrX:48123216ENST00000415083-1011413_416410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910392_401379.0388.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000269137-910413_416379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123215ENST00000415083-1011413_416410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910392_401379.0388.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000269137-910413_416379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:48123217ENST00000415083-1011413_416410.0419.0MotifSH2-binding
TgeneSSX1chr18:23612362chrX:48123216ENST000003769194820_83110.0347.3333333333333DomainKRAB-related
TgeneSSX1chr18:23612363chrX:48123215ENST000003769194820_83110.0347.3333333333333DomainKRAB-related
TgeneSSX1chr18:23612363chrX:48123217ENST000003769194820_83110.0347.3333333333333DomainKRAB-related


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Fusion Gene Sequence for SS18-SSX1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000415083_ENST00000376919_TCGA-DX-AB3B-01A_SS18_chr18_23612363_-_SSX1_chrX_48123217_length(transcript)=2118nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCC
CACAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAAC
ATGCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCCCCT
GGGGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAGGTG
CATAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCATTG
TATTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTATCCA
TGCACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAGGGC
AGTTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTATA
AGCATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCATCCG

>In-frame_ENST00000415083_ENST00000376919_TCGA-DX-AB3B-01A_SS18_chr18_23612363_-_SSX1_chrX_48123217_length(amino acids)=488AA_start in transcript=56_stop in transcript=1522
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEK

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000376919_TCGA-DX-AB3B-01A_SS18_chr18_23612363_-_SSX1_chrX_48123217_length(transcript)=2301nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTG
GCCCACAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGA
AACATGCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCC
CCTGGGGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAG
GTGCATAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCA
TTGTATTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTAT
CCATGCACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAG
GGCAGTTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGT
ATAAGCATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCAT

>In-frame_ENST00000269137_ENST00000376919_TCGA-DX-AB3B-01A_SS18_chr18_23612363_-_SSX1_chrX_48123217_length(amino acids)=514AA_start in transcript=161_stop in transcript=1705
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSK

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000376919_TCGA-DX-AB3B-01A_SS18_chr18_23612363_-_SSX1_chrX_48123217_length(transcript)=2116nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCCCA
CAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAACAT
GCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCCCCTGG
GGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAGGTGCA
TAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCATTGTA
TTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTATCCATG
CACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAGGGCAG
TTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTATAAG
CATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCATCCGAT

>In-frame_ENST00000545952_ENST00000376919_TCGA-DX-AB3B-01A_SS18_chr18_23612363_-_SSX1_chrX_48123217_length(amino acids)=405AA_start in transcript=303_stop in transcript=1520
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPG

--------------------------------------------------------------
>In-frame_ENST00000415083_ENST00000376919_TCGA-X6-A8C7_SS18_chr18_23612362_-_SSX1_chrX_48123216_length(transcript)=2118nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCC
CACAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAAC
ATGCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCCCCT
GGGGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAGGTG
CATAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCATTG
TATTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTATCCA
TGCACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAGGGC
AGTTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTATA
AGCATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCATCCG

>In-frame_ENST00000415083_ENST00000376919_TCGA-X6-A8C7_SS18_chr18_23612362_-_SSX1_chrX_48123216_length(amino acids)=488AA_start in transcript=56_stop in transcript=1522
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEK

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000376919_TCGA-X6-A8C7_SS18_chr18_23612362_-_SSX1_chrX_48123216_length(transcript)=2301nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTG
GCCCACAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGA
AACATGCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCC
CCTGGGGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAG
GTGCATAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCA
TTGTATTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTAT
CCATGCACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAG
GGCAGTTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGT
ATAAGCATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCAT

>In-frame_ENST00000269137_ENST00000376919_TCGA-X6-A8C7_SS18_chr18_23612362_-_SSX1_chrX_48123216_length(amino acids)=514AA_start in transcript=161_stop in transcript=1705
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSK

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000376919_TCGA-X6-A8C7_SS18_chr18_23612362_-_SSX1_chrX_48123216_length(transcript)=2116nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCCCA
CAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAACAT
GCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCCCCTGG
GGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAGGTGCA
TAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCATTGTA
TTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTATCCATG
CACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAGGGCAG
TTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTATAAG
CATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCATCCGAT

>In-frame_ENST00000545952_ENST00000376919_TCGA-X6-A8C7_SS18_chr18_23612362_-_SSX1_chrX_48123216_length(amino acids)=405AA_start in transcript=303_stop in transcript=1520
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPG

--------------------------------------------------------------
>In-frame_ENST00000415083_ENST00000376919_AB300354_SS18_chr18_23612363_-_SSX1_chrX_48123215_length(transcript)=2118nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCC
CACAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAAC
ATGCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCCCCT
GGGGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAGGTG
CATAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCATTG
TATTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTATCCA
TGCACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAGGGC
AGTTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTATA
AGCATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCATCCG

>In-frame_ENST00000415083_ENST00000376919_AB300354_SS18_chr18_23612363_-_SSX1_chrX_48123215_length(amino acids)=488AA_start in transcript=56_stop in transcript=1522
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEK

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000376919_AB300354_SS18_chr18_23612363_-_SSX1_chrX_48123215_length(transcript)=2301nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTG
GCCCACAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGA
AACATGCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCC
CCTGGGGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAG
GTGCATAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCA
TTGTATTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTAT
CCATGCACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAG
GGCAGTTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGT
ATAAGCATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCAT

>In-frame_ENST00000269137_ENST00000376919_AB300354_SS18_chr18_23612363_-_SSX1_chrX_48123215_length(amino acids)=514AA_start in transcript=161_stop in transcript=1705
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSK

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000376919_AB300354_SS18_chr18_23612363_-_SSX1_chrX_48123215_length(transcript)=2116nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCCCA
CAAAACGATGGGAAACAACTGCACCCCCCAGGAAAAGCAAATATTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAAACAT
GCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAGTGACCCTGAGGAAGATGACGAGTAACTCCCCTGG
GGGATACGACACATGCCCTTGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGCTCCCTCGTCATCAGGTGCA
TAGCAAGTGAAAGCAAGTGTTCACAACGGTGAAACTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGTGTTTCCATTGTA
TTTTCTTACAGTGTGCCATTCTGTTAGATACTATCCTTATAATTGATGAGCAAGACATACTGAATGCATATTTCGGTTTGTGTATCCATG
CACCTACGTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTATCCTCATCTCTCCCCAGATGTGACTACTGAGGGCAG
TTCTGAGTGTTTAATTTCAGACTTTTTCCTCTGCATTTACACACACACACACACACACACGCACACACACACACCAAGTACCAGTATAAG
CATCTCCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCTCATCCGAT

>In-frame_ENST00000545952_ENST00000376919_AB300354_SS18_chr18_23612363_-_SSX1_chrX_48123215_length(amino acids)=405AA_start in transcript=303_stop in transcript=1520
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPG

--------------------------------------------------------------

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Fusion Gene PPI Analysis for SS18-SSX1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SS18-SSX1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SS18-SSX1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSS18C0039101synovial sarcoma2CTD_human;ORPHANET
TgeneSSX1C0039101synovial sarcoma2CTD_human;ORPHANET
TgeneSSX1C2239176Liver carcinoma1CTD_human