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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SS18-SSX2 (FusionGDB2 ID:86073)

Fusion Gene Summary for SS18-SSX2

check button Fusion gene summary
Fusion gene informationFusion gene name: SS18-SSX2
Fusion gene ID: 86073
HgeneTgene
Gene symbol

SS18

SSX2

Gene ID

6760

6757

Gene nameSS18 subunit of BAF chromatin remodeling complexSSX family member 2
SynonymsSSXT|SYTCT5.2|CT5.2A|HD21|HOM-MEL-40|SSX
Cytomap

18q11.2

Xp11.22

Type of geneprotein-codingprotein-coding
Descriptionprotein SSXTSS18, nBAF chromatin remodeling complex subunitsynovial sarcoma translocated to X chromosome proteinsynovial sarcoma translocation, chromosome 18synovial sarcoma, translocated to X chromosomeprotein SSX2cancer/testis antigen 5.2cancer/testis antigen family 5, member 2asarcoma, synovial, X-chromosome-related 2synovial sarcoma, X breakpoint 2synovial sarcoma, X breakpoint 2Btumor antigen HOM-MEL-40
Modification date2020032920200313
UniProtAcc.

Q16385

Ensembl transtripts involved in fusion geneENST00000415083, ENST00000542420, 
ENST00000542743, ENST00000539849, 
ENST00000269137, ENST00000545952, 
ENST00000585241, 		ENST00000336777, 
ENST00000337502, ENST00000476392, 
Fusion gene scores* DoF score24 X 33 X 8=63363 X 17 X 5=255
# samples 3813
** MAII scorelog2(38/6336*10)=-4.05950101174866
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(13/255*10)=-0.971985623830404
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SS18 [Title/Abstract] AND SSX2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSS18(23612363)-SSX2(52729628), # samples:8
SSX2(52731210)-SS18(23610894), # samples:1
SSX2(52731351)-SS18(23610357), # samples:1
Anticipated loss of major functional domain due to fusion event.SS18-SSX2 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF.
SS18-SSX2 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSS18

GO:0045944

positive regulation of transcription by RNA polymerase II

15919756


check buttonFusion gene breakpoints across SS18 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SSX2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SARCTCGA-DX-A7EO-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-DX-A7ER-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-DX-AB3C-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-FX-A8OO-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-WK-A8XT-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-Z4-AAPF-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-FX-A8OOSS18chr18

23612362

-SSX2chrX

52789420

+
ChimerDB4SARCTCGA-DX-AB2Z-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4SARCTCGA-DX-AB2Z-01ASS18chr18

23612363

-SSX2chrX

52813117

-
ChimerDB4SARCTCGA-FX-A8OO-01ASS18chr18

23612363

-SSX2chrX

52729628

-
ChimerDB4synovial sarcomaAB012575SS18chr18

23615074

SSX2chrX

52729527

ChiTaRS5.0N/AAB300356SS18chr18

23612363

-SSX2chrX

52729630

-
ChiTaRS5.0N/AAF230662SS18chr18

23612363

-SSX2chrX

52729630

-
ChiTaRS5.0N/AAY138488SS18chr18

23610111

-SSX2chrX

52729933

-
ChiTaRS5.0N/AAY138489SS18chr18

23611274

-SSX2chrX

52731046

-
ChiTaRS5.0N/AAY138490SS18chr18

23610379

-SSX2chrX

52731318

-
ChiTaRS5.0N/AAY138491SS18chr18

22983419

-SSX2chrX

52731444

-
ChiTaRS5.0N/AAY138493SS18chr18

22983419

-SSX2chrX

52731097

-
ChiTaRS5.0N/AS79332SS18chr18

23612363

-SSX2chrX

52729630

-
ChiTaRS5.0N/AX79200SS18chr18

23612363

-SSX2chrX

52729630

-


Top

Fusion Gene ORF analysis for SS18-SSX2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000415083ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
In-frameENST00000415083ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-5UTRENST00000415083ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
Frame-shiftENST00000542420ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
Frame-shiftENST00000542420ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-5UTRENST00000542420ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
Frame-shiftENST00000542743ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
Frame-shiftENST00000542743ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-5UTRENST00000542743ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
Frame-shiftENST00000539849ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
Frame-shiftENST00000539849ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-5UTRENST00000539849ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
In-frameENST00000269137ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
In-frameENST00000269137ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-5UTRENST00000269137ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
In-frameENST00000545952ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
In-frameENST00000545952ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-5UTRENST00000545952ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
intron-3CDSENST00000585241ENST00000336777SS18chr18

23612363

-SSX2chrX

52729628

-
intron-3CDSENST00000585241ENST00000337502SS18chr18

23612363

-SSX2chrX

52729628

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23612363

-SSX2chrX

52729628

-
5CDS-intronENST00000415083ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000415083ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000415083ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000542420ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000542420ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000542420ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000542743ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000542743ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000542743ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000539849ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000539849ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000539849ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000269137ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000269137ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000269137ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000545952ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000545952ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000545952ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
intron-intronENST00000585241ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

+
intron-intronENST00000585241ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

+
intron-intronENST00000585241ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

+
5CDS-intronENST00000415083ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000415083ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000415083ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000542420ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000542420ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000542420ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000542743ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000542743ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000542743ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000539849ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000539849ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000539849ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000269137ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000269137ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000269137ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000545952ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000545952ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
5CDS-intronENST00000545952ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
intron-intronENST00000585241ENST00000336777SS18chr18

23612363

-SSX2chrX

52813117

-
intron-intronENST00000585241ENST00000337502SS18chr18

23612363

-SSX2chrX

52813117

-
intron-intronENST00000585241ENST00000476392SS18chr18

23612363

-SSX2chrX

52813117

-
intron-3CDSENST00000415083ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000415083ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000415083ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000542420ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000542420ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000542420ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000542743ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000542743ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000542743ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000539849ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000539849ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000539849ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000269137ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000269137ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000269137ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000545952ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000545952ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000545952ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000585241ENST00000336777SS18chr18

23615074

SSX2chrX

52729527

intron-3CDSENST00000585241ENST00000337502SS18chr18

23615074

SSX2chrX

52729527

intron-5UTRENST00000585241ENST00000476392SS18chr18

23615074

SSX2chrX

52729527

In-frameENST00000415083ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
In-frameENST00000415083ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
5CDS-5UTRENST00000415083ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
Frame-shiftENST00000542420ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
Frame-shiftENST00000542420ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
5CDS-5UTRENST00000542420ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
Frame-shiftENST00000542743ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
Frame-shiftENST00000542743ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
5CDS-5UTRENST00000542743ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
Frame-shiftENST00000539849ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
Frame-shiftENST00000539849ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
5CDS-5UTRENST00000539849ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
In-frameENST00000269137ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
In-frameENST00000269137ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
5CDS-5UTRENST00000269137ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
In-frameENST00000545952ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
In-frameENST00000545952ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
5CDS-5UTRENST00000545952ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
intron-3CDSENST00000585241ENST00000336777SS18chr18

23612363

-SSX2chrX

52729630

-
intron-3CDSENST00000585241ENST00000337502SS18chr18

23612363

-SSX2chrX

52729630

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23612363

-SSX2chrX

52729630

-
intron-intronENST00000415083ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000415083ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000415083ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000542420ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000542420ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000542420ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000542743ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000542743ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000542743ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000539849ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000539849ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000539849ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000269137ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000269137ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000269137ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000545952ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000545952ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000545952ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000585241ENST00000336777SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000585241ENST00000337502SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000585241ENST00000476392SS18chr18

23610111

-SSX2chrX

52729933

-
intron-intronENST00000415083ENST00000336777SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000415083ENST00000337502SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000415083ENST00000476392SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000542420ENST00000336777SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000542420ENST00000337502SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000542420ENST00000476392SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000542743ENST00000336777SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000542743ENST00000337502SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000542743ENST00000476392SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000539849ENST00000336777SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000539849ENST00000337502SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000539849ENST00000476392SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000269137ENST00000336777SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000269137ENST00000337502SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000269137ENST00000476392SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000545952ENST00000336777SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000545952ENST00000337502SS18chr18

23611274

-SSX2chrX

52731046

-
intron-intronENST00000545952ENST00000476392SS18chr18

23611274

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52731046

-
intron-intronENST00000585241ENST00000336777SS18chr18

23611274

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52731046

-
intron-intronENST00000585241ENST00000337502SS18chr18

23611274

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52731046

-
intron-intronENST00000585241ENST00000476392SS18chr18

23611274

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52731046

-
intron-intronENST00000415083ENST00000336777SS18chr18

23610379

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52731318

-
intron-intronENST00000415083ENST00000337502SS18chr18

23610379

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52731318

-
intron-intronENST00000415083ENST00000476392SS18chr18

23610379

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52731318

-
intron-intronENST00000542420ENST00000336777SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000542420ENST00000337502SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000542420ENST00000476392SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000542743ENST00000336777SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000542743ENST00000337502SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000542743ENST00000476392SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000539849ENST00000336777SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000539849ENST00000337502SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000539849ENST00000476392SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000269137ENST00000336777SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000269137ENST00000337502SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000269137ENST00000476392SS18chr18

23610379

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52731318

-
intron-intronENST00000545952ENST00000336777SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000545952ENST00000337502SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000545952ENST00000476392SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000585241ENST00000336777SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000585241ENST00000337502SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000585241ENST00000476392SS18chr18

23610379

-SSX2chrX

52731318

-
intron-intronENST00000415083ENST00000336777SS18chr18

22983419

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52731444

-
intron-intronENST00000415083ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000415083ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000542420ENST00000336777SS18chr18

22983419

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52731444

-
intron-intronENST00000542420ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000542420ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000542743ENST00000336777SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000542743ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000542743ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000539849ENST00000336777SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000539849ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000539849ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000269137ENST00000336777SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000269137ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000269137ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000545952ENST00000336777SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000545952ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000545952ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000585241ENST00000336777SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000585241ENST00000337502SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000585241ENST00000476392SS18chr18

22983419

-SSX2chrX

52731444

-
intron-intronENST00000415083ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000415083ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000415083ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000542420ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000542420ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000542420ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000542743ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000542743ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000542743ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000539849ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000539849ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000539849ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000269137ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000269137ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000269137ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000545952ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000545952ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000545952ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000585241ENST00000336777SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000585241ENST00000337502SS18chr18

22983419

-SSX2chrX

52731097

-
intron-intronENST00000585241ENST00000476392SS18chr18

22983419

-SSX2chrX

52731097

-
5CDS-5UTRENST00000269137ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
5CDS-5UTRENST00000269137ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
5CDS-5UTRENST00000415083ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
5CDS-5UTRENST00000415083ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
5CDS-5UTRENST00000539849ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
5CDS-5UTRENST00000539849ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
5CDS-5UTRENST00000542420ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
5CDS-5UTRENST00000542420ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
5CDS-5UTRENST00000542743ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
5CDS-5UTRENST00000542743ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
5CDS-5UTRENST00000545952ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
5CDS-5UTRENST00000545952ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
5CDS-intronENST00000269137ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000269137ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000269137ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000269137ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000269137ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000269137ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000415083ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000415083ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000415083ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000415083ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000415083ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000415083ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000539849ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000539849ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000539849ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000539849ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000539849ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000539849ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000542420ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000542420ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000542420ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000542420ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000542420ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000542420ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000542743ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000542743ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000542743ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000542743ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000542743ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000542743ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000545952ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000545952ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000545952ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000545952ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
5CDS-intronENST00000545952ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
5CDS-intronENST00000545952ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
5UTR-3CDSENST00000585241ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
5UTR-3CDSENST00000585241ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
5UTR-5UTRENST00000585241ENST00000476392SS18chr18

23637552

-SSX2chrX

52731680

-
Frame-shiftENST00000539849ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
Frame-shiftENST00000539849ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
Frame-shiftENST00000539849ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
Frame-shiftENST00000539849ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
Frame-shiftENST00000542420ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
Frame-shiftENST00000542420ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
Frame-shiftENST00000542420ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
Frame-shiftENST00000542420ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
Frame-shiftENST00000542743ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
Frame-shiftENST00000542743ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
Frame-shiftENST00000542743ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
Frame-shiftENST00000542743ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
In-frameENST00000269137ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
In-frameENST00000269137ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
In-frameENST00000269137ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
In-frameENST00000269137ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
In-frameENST00000415083ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
In-frameENST00000415083ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
In-frameENST00000415083ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
In-frameENST00000415083ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
In-frameENST00000545952ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
In-frameENST00000545952ENST00000336777SS18chr18

23637552

-SSX2chrX

52731680

-
In-frameENST00000545952ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
In-frameENST00000545952ENST00000337502SS18chr18

23637552

-SSX2chrX

52731680

-
intron-3CDSENST00000269137ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000269137ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000269137ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000269137ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000415083ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000415083ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000415083ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000415083ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000539849ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000539849ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000539849ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000539849ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000542420ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000542420ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000542420ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000542420ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000542743ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000542743ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000542743ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000542743ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000545952ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000545952ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000545952ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000545952ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000585241ENST00000336777SS18chr18

23612362

-SSX2chrX

52729628

-
intron-3CDSENST00000585241ENST00000336777SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000585241ENST00000336777SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3CDSENST00000585241ENST00000337502SS18chr18

23612362

-SSX2chrX

52729628

-
intron-3CDSENST00000585241ENST00000337502SS18chr18

23612390

-SSX2chrX

52729539

-
intron-3CDSENST00000585241ENST00000337502SS18chr18

23615074

-SSX2chrX

52729527

-
intron-3UTRENST00000269137ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000269137ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000269137ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000269137ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000269137ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000269137ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000415083ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000415083ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000415083ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000415083ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000415083ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000415083ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000539849ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000539849ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000539849ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000539849ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000539849ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000539849ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000542420ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000542420ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000542420ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000542420ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000542420ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000542420ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000542743ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000542743ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000542743ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000542743ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000542743ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000542743ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000545952ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000545952ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000545952ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000545952ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000545952ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000545952ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000585241ENST00000336777SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000585241ENST00000336777SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000585241ENST00000336777SS18chr18

23670542

-SSX2chrX

52726465

-
intron-3UTRENST00000585241ENST00000337502SS18chr18

23612422

-SSX2chrX

52726158

-
intron-3UTRENST00000585241ENST00000337502SS18chr18

23615074

-SSX2chrX

52726465

-
intron-3UTRENST00000585241ENST00000337502SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000269137ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000269137ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000269137ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000269137ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000415083ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000415083ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000415083ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000415083ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000539849ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000539849ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000539849ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000539849ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000542420ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000542420ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000542420ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000542420ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000542743ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000542743ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000542743ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000542743ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000545952ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000545952ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000545952ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000545952ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23612362

-SSX2chrX

52729628

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23612390

-SSX2chrX

52729539

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23615074

-SSX2chrX

52726465

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23615074

-SSX2chrX

52729527

-
intron-5UTRENST00000585241ENST00000476392SS18chr18

23670542

-SSX2chrX

52726465

-
intron-intronENST00000269137ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000269137ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000269137ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000269137ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000415083ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000415083ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000415083ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000415083ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000539849ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000539849ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000539849ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000539849ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000542420ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000542420ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000542420ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000542420ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000542743ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000542743ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000542743ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000542743ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000545952ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000545952ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000545952ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000545952ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000585241ENST00000336777SS18chr18

23612362

-SSX2chrX

52789420

-
intron-intronENST00000585241ENST00000336777SS18chr18

23612363

-SSX2chrX

52786931

-
intron-intronENST00000585241ENST00000336777SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000585241ENST00000337502SS18chr18

23612362

-SSX2chrX

52789420

-
intron-intronENST00000585241ENST00000337502SS18chr18

23612363

-SSX2chrX

52786931

-
intron-intronENST00000585241ENST00000337502SS18chr18

23670542

-SSX2chrX

52727038

-
intron-intronENST00000585241ENST00000476392SS18chr18

23612362

-SSX2chrX

52789420

-
intron-intronENST00000585241ENST00000476392SS18chr18

23612363

-SSX2chrX

52786931

-
intron-intronENST00000585241ENST00000476392SS18chr18

23612422

-SSX2chrX

52726158

-
intron-intronENST00000585241ENST00000476392SS18chr18

23670542

-SSX2chrX

52727038

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000415083SS18chr1823612363-ENST00000336777SSX2chrX52729628-22961286561627523
ENST00000415083SS18chr1823612363-ENST00000337502SSX2chrX52729628-21501286561522488
ENST00000269137SS18chr1823612363-ENST00000336777SSX2chrX52729628-247914691611810549
ENST00000269137SS18chr1823612363-ENST00000337502SSX2chrX52729628-233314691611705514
ENST00000545952SS18chr1823612363-ENST00000336777SSX2chrX52729628-229412843031625440
ENST00000545952SS18chr1823612363-ENST00000337502SSX2chrX52729628-214812843031520405
ENST00000415083SS18chr1823612363-ENST00000336777SSX2chrX52729630-22961286561627523
ENST00000415083SS18chr1823612363-ENST00000337502SSX2chrX52729630-21501286561522488
ENST00000269137SS18chr1823612363-ENST00000336777SSX2chrX52729630-247914691611810549
ENST00000269137SS18chr1823612363-ENST00000337502SSX2chrX52729630-233314691611705514
ENST00000545952SS18chr1823612363-ENST00000336777SSX2chrX52729630-229412843031625440
ENST00000545952SS18chr1823612363-ENST00000337502SSX2chrX52729630-214812843031520405

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000415083ENST00000336777SS18chr1823612363-SSX2chrX52729628-0.0068168910.9931831
ENST00000415083ENST00000337502SS18chr1823612363-SSX2chrX52729628-0.0035131920.9964868
ENST00000269137ENST00000336777SS18chr1823612363-SSX2chrX52729628-0.0067176810.9932823
ENST00000269137ENST00000337502SS18chr1823612363-SSX2chrX52729628-0.003668230.99633175
ENST00000545952ENST00000336777SS18chr1823612363-SSX2chrX52729628-0.0030936630.99690634
ENST00000545952ENST00000337502SS18chr1823612363-SSX2chrX52729628-0.0015456190.99845433
ENST00000415083ENST00000336777SS18chr1823612363-SSX2chrX52729630-0.0068168910.9931831
ENST00000415083ENST00000337502SS18chr1823612363-SSX2chrX52729630-0.0035131920.9964868
ENST00000269137ENST00000336777SS18chr1823612363-SSX2chrX52729630-0.0067176810.9932823
ENST00000269137ENST00000337502SS18chr1823612363-SSX2chrX52729630-0.003668230.99633175
ENST00000545952ENST00000336777SS18chr1823612363-SSX2chrX52729630-0.0030936630.99690634
ENST00000545952ENST00000337502SS18chr1823612363-SSX2chrX52729630-0.0015456190.99845433

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Fusion Genomic Features for SS18-SSX2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SS18-SSX2


check button Go to

FGviewer for the breakpoints of chr18:23612363-chrX:52729628

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.SSX2

Q16385

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Could act as a modulator of transcription.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-91095_99379.0388.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-101195_99410.0419.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-91095_99379.0388.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-101195_99410.0419.0Compositional biasNote=Poly-Pro
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910374_377379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-91050_53379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011374_377410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011392_401410.0419.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-101150_53410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910374_377379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-91050_53379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011374_377410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011392_401410.0419.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-101150_53410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-9102_186379.0388.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910344_369379.0388.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-10112_186410.0419.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011344_369410.0419.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-9102_186379.0388.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910344_369379.0388.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-10112_186410.0419.0RegionNote=Transcriptional activation
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011344_369410.0419.0RegionNote=2 X 13 AA imperfect tandem repeats
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910344_356379.0388.0RepeatNote=1
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910357_369379.0388.0RepeatNote=2
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011344_356410.0419.0RepeatNote=1
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011357_369410.0419.0RepeatNote=2
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910344_356379.0388.0RepeatNote=1
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910357_369379.0388.0RepeatNote=2
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011344_356410.0419.0RepeatNote=1
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011357_369410.0419.0RepeatNote=2

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910175_418379.0388.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011175_418410.0419.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910175_418379.0388.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011175_418410.0419.0Compositional biasNote=Gln-rich
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910392_401379.0388.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000269137-910413_416379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729628ENST00000415083-1011413_416410.0419.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910392_401379.0388.0MotifSH3-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000269137-910413_416379.0388.0MotifSH2-binding
HgeneSS18chr18:23612363chrX:52729630ENST00000415083-1011413_416410.0419.0MotifSH2-binding
TgeneSSX2chr18:23612363chrX:52729628ENST000003367774920_83110.0420.3333333333333DomainKRAB-related
TgeneSSX2chr18:23612363chrX:52729628ENST000003375024820_83110.0376.0DomainKRAB-related
TgeneSSX2chr18:23612363chrX:52729630ENST000003367774920_83110.0420.3333333333333DomainKRAB-related
TgeneSSX2chr18:23612363chrX:52729630ENST000003375024820_83110.0376.0DomainKRAB-related


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Fusion Gene Sequence for SS18-SSX2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000415083_ENST00000336777_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(transcript)=2296nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCC
CACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGAAATAGGGAGGCCCAAG
AAAAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAACACACACAACATTGGTCGATTCAGTTTGTCAACTTCTATGGGTG
CAGTTCATGGTACCCCCAAAACAATTACACACAACAGGGACCCAAAAGGGGGGAACATGCCTGGACCCACAGACTGCGTGAGAGAAAACA
GCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCAGGGATACGACACATGCCCATGATGAGAAGCAG
AACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGA
AAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGTATTTTCTTACACTGTGTCATTCTGTTAGATAC
TAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCATGCACCTACCTTAGAAAACAAGTATTGTCGGTT
ACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCT
GCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATAAG
CATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCTCATCCGAT

>In-frame_ENST00000415083_ENST00000336777_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(amino acids)=523AA_start in transcript=56_stop in transcript=1627
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEK

--------------------------------------------------------------
>In-frame_ENST00000415083_ENST00000337502_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(transcript)=2150nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCC
CACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGACCCAAAAGGGGGGAAC
ATGCCTGGACCCACAGACTGCGTGAGAGAAAACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCT
CAGGGATACGACACATGCCCATGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTG
CATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTT
GTATTTTCTTACACTGTGTCATTCTGTTAGATACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCC
ATGCACCTACCTTAGAAAACAAGTATTGTCGGTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGC
AGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACAC
ACACACACACACACACACCAAGTACCAGTATAAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCT

>In-frame_ENST00000415083_ENST00000337502_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(amino acids)=488AA_start in transcript=56_stop in transcript=1522
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEK

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000336777_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(transcript)=2479nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTG
GCCCACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGAAATAGGGAGGCCC
AAGAAAAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAACACACACAACATTGGTCGATTCAGTTTGTCAACTTCTATGG
GTGCAGTTCATGGTACCCCCAAAACAATTACACACAACAGGGACCCAAAAGGGGGGAACATGCCTGGACCCACAGACTGCGTGAGAGAAA
ACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCAGGGATACGACACATGCCCATGATGAGAAG
CAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAG
TGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGTATTTTCTTACACTGTGTCATTCTGTTAGA
TACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCATGCACCTACCTTAGAAAACAAGTATTGTCG
GTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCC
TCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT
AAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCTCATCC

>In-frame_ENST00000269137_ENST00000336777_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(amino acids)=549AA_start in transcript=161_stop in transcript=1810
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE
EVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGP

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000337502_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(transcript)=2333nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTG
GCCCACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGACCCAAAAGGGGGG
AACATGCCTGGACCCACAGACTGCGTGAGAGAAAACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCC
CCTCAGGGATACGACACATGCCCATGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAG
GTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTAC
GTTGTATTTTCTTACACTGTGTCATTCTGTTAGATACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTA
TCCATGCACCTACCTTAGAAAACAAGTATTGTCGGTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAG
GGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACA
CACACACACACACACACACACCAAGTACCAGTATAAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCAC

>In-frame_ENST00000269137_ENST00000337502_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(amino acids)=514AA_start in transcript=161_stop in transcript=1705
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000336777_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(transcript)=2294nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCCCA
CAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGAAATAGGGAGGCCCAAGAA
AAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAACACACACAACATTGGTCGATTCAGTTTGTCAACTTCTATGGGTGCA
GTTCATGGTACCCCCAAAACAATTACACACAACAGGGACCCAAAAGGGGGGAACATGCCTGGACCCACAGACTGCGTGAGAGAAAACAGC
TGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCAGGGATACGACACATGCCCATGATGAGAAGCAGAA
CGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAA
AGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGTATTTTCTTACACTGTGTCATTCTGTTAGATACTA
ACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCATGCACCTACCTTAGAAAACAAGTATTGTCGGTTAC
CTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGC
ATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATAAGCA
TCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCTCATCCGATTC

>In-frame_ENST00000545952_ENST00000336777_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(amino acids)=440AA_start in transcript=303_stop in transcript=1625
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPG

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000337502_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(transcript)=2148nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCCCA
CAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGACCCAAAAGGGGGGAACAT
GCCTGGACCCACAGACTGCGTGAGAGAAAACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCA
GGGATACGACACATGCCCATGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCA
TAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGT
ATTTTCTTACACTGTGTCATTCTGTTAGATACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCAT
GCACCTACCTTAGAAAACAAGTATTGTCGGTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAG
TTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACAC
ACACACACACACACACCAAGTACCAGTATAAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGT

>In-frame_ENST00000545952_ENST00000337502_TCGA-DX-A7EO-01A_SS18_chr18_23612363_-_SSX2_chrX_52729628_length(amino acids)=405AA_start in transcript=303_stop in transcript=1520
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPG

--------------------------------------------------------------
>In-frame_ENST00000415083_ENST00000336777_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(transcript)=2296nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCC
CACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGAAATAGGGAGGCCCAAG
AAAAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAACACACACAACATTGGTCGATTCAGTTTGTCAACTTCTATGGGTG
CAGTTCATGGTACCCCCAAAACAATTACACACAACAGGGACCCAAAAGGGGGGAACATGCCTGGACCCACAGACTGCGTGAGAGAAAACA
GCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCAGGGATACGACACATGCCCATGATGAGAAGCAG
AACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGA
AAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGTATTTTCTTACACTGTGTCATTCTGTTAGATAC
TAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCATGCACCTACCTTAGAAAACAAGTATTGTCGGTT
ACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCT
GCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATAAG
CATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCTCATCCGAT

>In-frame_ENST00000415083_ENST00000336777_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(amino acids)=523AA_start in transcript=56_stop in transcript=1627
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEK

--------------------------------------------------------------
>In-frame_ENST00000415083_ENST00000337502_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(transcript)=2150nt_BP=1286nt
AGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAG
GCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAG
GAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGC
AGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTC
ACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACC
ATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAG
GTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTC
CCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCG
GACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTC
CCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTC
CTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATA
GGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCAC
AACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTC
CAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCC
AGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCC
CACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGACCCAAAAGGGGGGAAC
ATGCCTGGACCCACAGACTGCGTGAGAGAAAACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCT
CAGGGATACGACACATGCCCATGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTG
CATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTT
GTATTTTCTTACACTGTGTCATTCTGTTAGATACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCC
ATGCACCTACCTTAGAAAACAAGTATTGTCGGTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGC
AGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACAC
ACACACACACACACACACCAAGTACCAGTATAAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCT

>In-frame_ENST00000415083_ENST00000337502_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(amino acids)=488AA_start in transcript=56_stop in transcript=1522
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEK

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000336777_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(transcript)=2479nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTG
GCCCACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGAAATAGGGAGGCCC
AAGAAAAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAACACACACAACATTGGTCGATTCAGTTTGTCAACTTCTATGG
GTGCAGTTCATGGTACCCCCAAAACAATTACACACAACAGGGACCCAAAAGGGGGGAACATGCCTGGACCCACAGACTGCGTGAGAGAAA
ACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCAGGGATACGACACATGCCCATGATGAGAAG
CAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAG
TGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGTATTTTCTTACACTGTGTCATTCTGTTAGA
TACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCATGCACCTACCTTAGAAAACAAGTATTGTCG
GTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCC
TCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTAT
AAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCTCATCC

>In-frame_ENST00000269137_ENST00000336777_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(amino acids)=549AA_start in transcript=161_stop in transcript=1810
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE
EVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGP

--------------------------------------------------------------
>In-frame_ENST00000269137_ENST00000337502_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(transcript)=2333nt_BP=1469nt
TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCAGGGGGTGCCCATAAGGAGAGCTCGGG
GGATGCAGGGACGGTCAAGAAAGTTCGGCCAGGGCTAGGGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGCCAGAGTGCCTCCTT
CAGGCCTGCCCCGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCGAGAGGCCGGCGTCTC
TCCCCCAGTTTGCCGTTCACCCGGAGCGCTCGGGACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGC
AGCGAGGCAAGGGGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGA
ATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAA
ATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCAC
GCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGC
CTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCA
TGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACT
ATGGTCCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGG
GAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGA
TTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGAC
AAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTC
CACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTG
GTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCAC
CCCAGCAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTG
GCCCACAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGACCCAAAAGGGGGG
AACATGCCTGGACCCACAGACTGCGTGAGAGAAAACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCC
CCTCAGGGATACGACACATGCCCATGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAG
GTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTAC
GTTGTATTTTCTTACACTGTGTCATTCTGTTAGATACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTA
TCCATGCACCTACCTTAGAAAACAAGTATTGTCGGTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAG
GGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACA
CACACACACACACACACACACCAAGTACCAGTATAAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCAC

>In-frame_ENST00000269137_ENST00000337502_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(amino acids)=514AA_start in transcript=161_stop in transcript=1705
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000336777_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(transcript)=2294nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCCCA
CAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGAAATAGGGAGGCCCAAGAA
AAGGAAGAGAGACGCGGAACAGCTCATCGGTGGAGCAGTCAGAACACACACAACATTGGTCGATTCAGTTTGTCAACTTCTATGGGTGCA
GTTCATGGTACCCCCAAAACAATTACACACAACAGGGACCCAAAAGGGGGGAACATGCCTGGACCCACAGACTGCGTGAGAGAAAACAGC
TGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCAGGGATACGACACATGCCCATGATGAGAAGCAGAA
CGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAA
AGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGTATTTTCTTACACTGTGTCATTCTGTTAGATACTA
ACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCATGCACCTACCTTAGAAAACAAGTATTGTCGGTTAC
CTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAGTTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGC
ATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACACACACACACACACACACCAAGTACCAGTATAAGCA
TCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCTCATCCGATTC

>In-frame_ENST00000545952_ENST00000336777_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(amino acids)=440AA_start in transcript=303_stop in transcript=1625
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPG

--------------------------------------------------------------
>In-frame_ENST00000545952_ENST00000337502_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(transcript)=2148nt_BP=1284nt
ACTTGCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACTCCCGCTGCGAT
TCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGGTCAT
GAATAAACCACATCTGTTAGTATGGTTTGGTCAGTGGTCCTCAGAAAATCTCATGTCGTGCAACCATACTAATACTCAAGCAAAGGAAAA
CTTGAAGGCCTAGACTGAAACAGGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATG
CAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCT
CACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAAC
CATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGA
GGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGT
CCCAGACCAAATATGAGTATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGC
GGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCT
CCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGT
CCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAA
CAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCA
GGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAG
CAGAGGCCTTATGGATATGACCAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGGAGGAAGTGCCAGAAGCATCTGGCCCA
CAAAATGATGGGAAAGAGCTGTGCCCCCCGGGAAAACCAACTACCTCTGAGAAGATTCACGAGAGATCTGGACCCAAAAGGGGGGAACAT
GCCTGGACCCACAGACTGCGTGAGAGAAAACAGCTGGTGATTTATGAAGAGATCAGCGACCCTGAGGAAGATGACGAGTAACTCCCCTCA
GGGATACGACACATGCCCATGATGAGAAGCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCGTCATCAGGTGCA
TAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTTGAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTAGCGTTTACGTTGT
ATTTTCTTACACTGTGTCATTCTGTTAGATACTAACATTTTCATTGATGAGCAAGACATACTTAATGCATATTTTGGTTTGTGTATCCAT
GCACCTACCTTAGAAAACAAGTATTGTCGGTTACCTCTGCATGGAACAGCATTACCCTCCTCTCTCCCCAGATGTGACTACTGAGGGCAG
TTCTGAGTGTTTAATTTCAGATTTTTTCCTCTGCATTTACACACACACGCACACAAACCACACCACACACACACACACACACACACACAC
ACACACACACACACACCAAGTACCAGTATAAGCATCTGCCATCTGCTTTTCCCATTGCCATGCGTCCTGGTCAAGCTCCCCTCACTCTGT

>In-frame_ENST00000545952_ENST00000337502_AB300356_SS18_chr18_23612363_-_SSX2_chrX_52729630_length(amino acids)=405AA_start in transcript=303_stop in transcript=1520
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPG

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Fusion Gene PPI Analysis for SS18-SSX2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneSSX2chr18:23612363chrX:52729628ENST000003367774925_80110.0420.3333333333333RAB3IP
TgeneSSX2chr18:23612363chrX:52729628ENST000003375024825_80110.0376.0RAB3IP
TgeneSSX2chr18:23612363chrX:52729630ENST000003367774925_80110.0420.3333333333333RAB3IP
TgeneSSX2chr18:23612363chrX:52729630ENST000003375024825_80110.0376.0RAB3IP
TgeneSSX2chr18:23612363chrX:52729628ENST00000336777491_80110.0420.3333333333333SSX2IP
TgeneSSX2chr18:23612363chrX:52729628ENST00000337502481_80110.0376.0SSX2IP
TgeneSSX2chr18:23612363chrX:52729630ENST00000336777491_80110.0420.3333333333333SSX2IP
TgeneSSX2chr18:23612363chrX:52729630ENST00000337502481_80110.0376.0SSX2IP


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SS18-SSX2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SS18-SSX2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSS18C0039101synovial sarcoma2CTD_human;ORPHANET
TgeneSSX2C0033578Prostatic Neoplasms1CTD_human
TgeneSSX2C0039101synovial sarcoma1CTD_human;ORPHANET
TgeneSSX2C0376358Malignant neoplasm of prostate1CTD_human