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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:SSBP3-DHCR24 (FusionGDB2 ID:86123)

Fusion Gene Summary for SSBP3-DHCR24

check button Fusion gene summary
Fusion gene informationFusion gene name: SSBP3-DHCR24
Fusion gene ID: 86123
HgeneTgene
Gene symbol

SSBP3

DHCR24

Gene ID

23648

1718

Gene namesingle stranded DNA binding protein 324-dehydrocholesterol reductase
SynonymsCSDP|SSDP|SSDP1DCE|Nbla03646|SELADIN1|seladin-1
Cytomap

1p32.3

1p32.3

Type of geneprotein-codingprotein-coding
Descriptionsingle-stranded DNA-binding protein 3sequence-specific single-stranded-DNA-binding proteindelta(24)-sterol reductase3 beta-hydroxysterol delta 24-reductasedesmosterol-to-cholesterol enzymediminuto/dwarf1 homologseladin 1selective AD indicator 1
Modification date2020031320200320
UniProtAcc.

Q15392

Ensembl transtripts involved in fusion geneENST00000326956, ENST00000417664, 
ENST00000371320, ENST00000371319, 
ENST00000357475, 
ENST00000371269, 
ENST00000537443, ENST00000535035, 
Fusion gene scores* DoF score13 X 9 X 6=7029 X 10 X 4=360
# samples 149
** MAII scorelog2(14/702*10)=-2.32604420335959
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/360*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SSBP3 [Title/Abstract] AND DHCR24 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSSBP3(54867534)-DHCR24(55341720), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneDHCR24

GO:0043066

negative regulation of apoptotic process

15688385

TgeneDHCR24

GO:0043154

negative regulation of cysteine-type endopeptidase activity involved in apoptotic process

11007892


check buttonFusion gene breakpoints across SSBP3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across DHCR24 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-24-1842-01ASSBP3chr1

54867534

-DHCR24chr1

55341720

-
ChimerDB4OVTCGA-24-1842-01ASSBP3chr1

54867534

-DHCR24chr1

55341720

-


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Fusion Gene ORF analysis for SSBP3-DHCR24

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000326956ENST00000371269SSBP3chr1

54867534

-DHCR24chr1

55341720

-
intron-intronENST00000326956ENST00000537443SSBP3chr1

54867534

-DHCR24chr1

55341720

-
intron-intronENST00000326956ENST00000535035SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5UTR-3CDSENST00000417664ENST00000371269SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5UTR-intronENST00000417664ENST00000537443SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5UTR-intronENST00000417664ENST00000535035SSBP3chr1

54867534

-DHCR24chr1

55341720

-
In-frameENST00000371320ENST00000371269SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5CDS-intronENST00000371320ENST00000537443SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5CDS-intronENST00000371320ENST00000535035SSBP3chr1

54867534

-DHCR24chr1

55341720

-
In-frameENST00000371319ENST00000371269SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5CDS-intronENST00000371319ENST00000537443SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5CDS-intronENST00000371319ENST00000535035SSBP3chr1

54867534

-DHCR24chr1

55341720

-
In-frameENST00000357475ENST00000371269SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5CDS-intronENST00000357475ENST00000537443SSBP3chr1

54867534

-DHCR24chr1

55341720

-
5CDS-intronENST00000357475ENST00000535035SSBP3chr1

54867534

-DHCR24chr1

55341720

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000371320SSBP3chr154867534-ENST00000371269DHCR24chr155341720-44516874021850482
ENST00000371319SSBP3chr154867534-ENST00000371269DHCR24chr155341720-404027601439479
ENST00000357475SSBP3chr154867534-ENST00000371269DHCR24chr155341720-42554912061654482

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000371320ENST00000371269SSBP3chr154867534-DHCR24chr155341720-0.002662770.99733716
ENST00000371319ENST00000371269SSBP3chr154867534-DHCR24chr155341720-0.0021721580.9978278
ENST00000357475ENST00000371269SSBP3chr154867534-DHCR24chr155341720-0.0023809940.997619

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Fusion Genomic Features for SSBP3-DHCR24


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for SSBP3-DHCR24


check button Go to

FGviewer for the breakpoints of chr1:54867534-chr1:55341720

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.DHCR24

Q15392

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Catalyzes the reduction of the delta-24 double bond of sterol intermediates during cholesterol biosynthesis (PubMed:11519011, PubMed:21671375, PubMed:25637936, PubMed:22178193). In addition to its cholesterol-synthesizing activity, can protect cells from oxidative stress by reducing caspase 3 activity during apoptosis induced by oxidative stress (PubMed:11007892, PubMed:22010141). Also protects against amyloid-beta peptide-induced apoptosis (PubMed:11007892). {ECO:0000269|PubMed:11007892, ECO:0000269|PubMed:11519011, ECO:0000269|PubMed:21671375, ECO:0000269|PubMed:22010141, ECO:0000269|PubMed:22178193, ECO:0000269|PubMed:25637936}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSSBP3chr1:54867534chr1:55341720ENST00000357475-41716_4892.0369.0DomainLisH
HgeneSSBP3chr1:54867534chr1:55341720ENST00000371319-41716_4892.0362.0DomainLisH
HgeneSSBP3chr1:54867534chr1:55341720ENST00000371320-41816_4892.0389.0DomainLisH
TgeneDHCR24chr1:54867534chr1:55341720ENST0000037126919163_175129.0517.0Nucleotide bindingFAD

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSSBP3chr1:54867534chr1:55341720ENST00000357475-417158_36992.0369.0Compositional biasNote=Gly-rich
HgeneSSBP3chr1:54867534chr1:55341720ENST00000357475-41798_31992.0369.0Compositional biasNote=Pro-rich
HgeneSSBP3chr1:54867534chr1:55341720ENST00000371319-417158_36992.0362.0Compositional biasNote=Gly-rich
HgeneSSBP3chr1:54867534chr1:55341720ENST00000371319-41798_31992.0362.0Compositional biasNote=Pro-rich
HgeneSSBP3chr1:54867534chr1:55341720ENST00000371320-418158_36992.0389.0Compositional biasNote=Gly-rich
HgeneSSBP3chr1:54867534chr1:55341720ENST00000371320-41898_31992.0389.0Compositional biasNote=Pro-rich
TgeneDHCR24chr1:54867534chr1:55341720ENST000003712691958_234129.0517.0DomainFAD-binding PCMH-type
TgeneDHCR24chr1:54867534chr1:55341720ENST000003712691923_31129.0517.0Topological domainLumenal
TgeneDHCR24chr1:54867534chr1:55341720ENST000003712691953_516129.0517.0Topological domainCytoplasmic
TgeneDHCR24chr1:54867534chr1:55341720ENST000003712691932_52129.0517.0TransmembraneHelical


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Fusion Gene Sequence for SSBP3-DHCR24


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000371320_ENST00000371269_TCGA-24-1842-01A_SSBP3_chr1_54867534_-_DHCR24_chr1_55341720_length(transcript)=4451nt_BP=687nt
AGCCACGTTCGGTTGAGCTCCAAGTAGACCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGTGCTGGAGGCGCAGAGGGCGGCGCAGGC
GGAGCCGGGCGGGCGCGCGAGCGAGCGGAGAGCGGGCGGCCGTGCGGGCGGCGGCGGCGGCACCCCCAGGCCGAGCCGGCGCGGAAGGAG
TTCCAGGGCGATGGGGCCGCGGCCGGGGCTGACGCTTTGACAGCTGGAAAGAGCGCGGAGCCAGCGCCTGGGGGGGAGGGAGGGGAGCGC
GGCGAGGAGAGCGCCAGCGAGCGAGAGAGCGAGCGAGCGCCGGGGAGGGGGCCGGGAGCGAGGGGCAGCTCGGGAGAGCCGGAGCGGTAG
CGGCGGCGGCGGCGGCGGCGGCGAGGCTCGGCGCCCTCTTCCCTGCAAACCATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGAT
GGGCAGGCTCGGGAAAAGTTAGCTTTATACGTCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAG
ATTCGATGGGAAAAAAACATCACGTTGGGAGAACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCT
CCTGAAAGGAGAGACACTTGTGAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATATTGTCCGTGTGGAGCCCTTGGTGACCATGGGC
CAGGTGACTGCCCTGCTGACCTCCATTGGCTGGACTCTCCCCGTGTTGCCTGAGCTTGATGACCTCACAGTGGGGGGCTTGATCATGGGC
ACAGGCATCGAGTCATCATCCCACAAGTACGGCCTGTTCCAACACATCTGCACTGCTTACGAGCTGGTCCTGGCTGATGGCAGCTTTGTG
CGATGCACTCCGTCCGAAAACTCAGACCTGTTCTATGCCGTACCCTGGTCCTGTGGGACGCTGGGTTTCCTGGTGGCCGCTGAGATCCGC
ATCATCCCTGCCAAGAAGTACGTCAAGCTGCGTTTCGAGCCAGTGCGGGGCCTGGAGGCTATCTGTGCCAAGTTCACCCACGAGTCCCAG
CGGCAGGAGAACCACTTCGTGGAAGGGCTGCTCTACTCCCTGGATGAGGCTGTCATTATGACAGGGGTCATGACAGATGAGGCAGAGCCC
AGCAAGCTGAATAGCATTGGCAATTACTACAAGCCGTGGTTCTTTAAGCATGTGGAGAACTATCTGAAGACAAACCGAGAGGGCCTGGAG
TACATTCCCTTGAGACACTACTACCACCGCCACACGCGCAGCATCTTCTGGGAGCTCCAGGACATTATCCCCTTTGGCAACAACCCCATC
TTCCGCTACCTCTTTGGCTGGATGGTGCCTCCCAAGATCTCCCTCCTGAAGCTGACCCAGGGTGAGACCCTGCGCAAGCTGTACGAGCAG
CACCACGTGGTGCAGGACATGCTGGTGCCCATGAAGTGCCTGCAGCAGGCCCTGCACACCTTCCAAAACGACATCCACGTCTACCCCATC
TGGCTGTGTCCGTTCATCCTGCCCAGCCAGCCAGGCCTAGTGCACCCCAAAGGAAATGAGGCAGAGCTCTACATCGACATTGGAGCATAT
GGGGAGCCGCGTGTGAAACACTTTGAAGCCAGGTCCTGCATGAGGCAGCTGGAGAAGTTTGTCCGCAGCGTGCATGGCTTCCAGATGCTG
TATGCCGACTGCTACATGAACCGGGAGGAGTTCTGGGAGATGTTTGATGGCTCCTTGTACCACAAGCTGCGAGAGAAGCTGGGTTGCCAG
GACGCCTTCCCCGAGGTGTACGACAAGATCTGCAAGGCCGCCAGGCACTGAGCTGGAGCCCGCCTGGAGAGACAGACACGTGTGAGTGGT
CAGGCATCTTCCCTTCACTCAAGCTTGGCTGCTTTCCTAGATCCACACTTTCAAAGAGAAACCCCTCCAGAACTCCCACCCTGACAGCCC
AACACCACCTTCCTCCTGGCTTCCAGGGGGCAGCCCAGTGGAATGGAAAGAATGTGGGATTTGGAGTCAGACAAGCCTGAGTCCAGTTCC
CCGTTTAGAACTCATTAGCTGTGTGACTCTGGGTGAGTCCCTTAACCCCTCTGAGCCCGGGTCTCTTCATTAGTTGAAAGGGATAGTAAT
ACCTACTTGCAGGTTGTTGTCATCTGAGTTGAGCACTGGTCACATTGAAGGTGCTGGGTAAGTGGTAGCTCTTGTTGCTTCCCGTTCAGC
GTCACATCTGCAGTGGAGCCTGAAAAGGCTCCACATTAGGTCACCTGTGCACAGCCATGGCTGGAATGATGAAGGGGATACGCTGGAGTT
GCCCTGCCATCGCCTCCATCAGCCAGACGAGGTCCTCACAGGAGAAGGACAGCTCTTCCCCACCCTGGGATCTCAGGAGGGCAGCCACGG
AGTGGGGAGGCCCCAGATGCGCTGTGCCAAAGCCAGGTCCGAGGCCAAAGTTCTCCCTGCCATCCTTGGTGCCGTCCTGCCCCTTCCTCC
TTCATGCCTGGGCCTGCAGGCCCACCCCAGCCACCACTGAGTCCACTCGGAGTGCCCTGTGTTCCTGGAGAAGGCATTCCAGGGTTGAAT
CTTGTCCCAGCCTCAGCCTGGGACACCTAGGTGGAGAGAGTGGTCTCCGCTCTGAATTGGATCCAGGGGACCTGGGCTCATTCTTCTTGG
CTCACCAACCCTGCAGGCCTCATCTTTCCCAAAACCCACTTTGTCTTGGTGGGAGTGGGTCCGCGCTGCTCTGCAGCAGGGGCTGGGGAG
TGGACAGCATCAGGTGGGAAAGTGGAGTCCACCCTCATGTTTCTGTAGGATTCTCACCGTGGGGCTGGAAGAAAAGAGCATCGACTTGAT
TTCTCCAACCACTCATCCCTCTTTTTCTTTCTTCCACCACTCCCCACCCCAGCTGTAGTTAATTTCAGTGCCTTACAAATCCTAAGCTCA
GAGAAAGTTCCATTTCCGTTCCAGAGGGAAGGGAACCTCCCTAGGTCCTTCCCTGGCTTGTTATAACGCAAAGCTTGGTTGTTTATGCAA
CTCTATCTTAAGAACTGCCCAGCCTCAGCTGAAAACCCGAATCTGAGAAGGAATTGCGTCATGTAAGGGAAGCTGGAATTAAGGGAGCTG
AGCCAGTCATGGTTGTGGCGTGTGAGTCAGGAGACCTAGGTTTCAGCCCCTCTCTACTGTCAGCGAGCTGTGCAACGTGGGCAAGTCATT
GTCCTCTGAGCTGCAGTTTCCTCATCTGTCACATCGCTACAGACAAGACCTCCCTGGAACCCTTCTGATTGTCTTAGACACTGTGGTTGC
AAAACCCACGGAAAGCCTCATTTGTGTGGAAAGTCAGAGGAAAAATGATCCAGTGGACACTTGGGGATTATCTGTCATTCAAGATCCTTC
CTTCAACCCCAAGGTCAGCTCCCATCTCATTTCCAGAAAGGCTCATACCTGGCTTGCAGGGAAGCATCTGTCTTGTCATTCCAGGTGCCA
GAATCCTCTCAGAGTCATTGAAGGGTGTTCACCCATCCCACCCAAGGCTTGGCACACTGCCAGTGTCTTAGCAGGGTCTTGTGAGGGCTG
GGGGCATCCAGGCACTCAGAAGGCAAAGGAACCACCCTACCCATTTGGCCTCTGGAGGGGGCAGAAGAAAGAAATAAACCTCATCCTATA
TTTTACAAAGCATGTGAATTCTGGCATTAGCTCTCATAGGAGACCCATGTGCTTCCTTGCTCAGTGCAAAACTGATGATTCTACTTGCTG
TAGATGAATGGTTAACACGAGCTAGTTAAACAGTGCCATTGTTTTGCCAGTGAAGCCTCCAACCCTAAGCCACTGGGACGGTGGCCAGAG
ATGCCAGCAGCCTCTGTCGCCCTTAGTCATATAACCAAAATCCAGACCTTATCCACAACCCGGGGCTTGGAAAGGAAGGTATTTTGGAAT
CACACCCTCCGGTTATGTTGCTCCAGTAAAATCTTGCCTGGAAAGAGGCAGTCTTCTTAGCATGGTGAGCTGAGTTCATGGCTTTTTTTT
GTAGCCAGTCCTGTCCCTGGCCATCCATGTGATGGTTTTGGATGGAGTTAAACTTGATGCCAGTGGGCAGTGCATGTGGAAAGTATCAGA
GTAAGGCTCTCCCCTCCAGAGCCCTGAGTTTCTTGGCTGCATGAAGGTTTTCTTTAGAATCAGAATTGTAGCCAGTTTCTTTGGCCAGAA
GGATGAATACTTGGATATTACTGAAAGGGAGGGGTGGAGATGGGTGTGGCAGTGTATGGTGTGTGATTTTTATTTTCTTCTTTGGTCATG
GGGGCCAAGGAGAAAGGCATGAATCTTCCCTGTCAGGCTCTTACAGCCACAGGCACTGTGTCTACTGTCTGGAAGACATGTCCCCATGGC

>In-frame_ENST00000371320_ENST00000371269_TCGA-24-1842-01A_SSBP3_chr1_54867534_-_DHCR24_chr1_55341720_length(amino acids)=482AA_start in transcript=402_stop in transcript=1850
MQTMFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAK
AFHDYIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCTPSENSDLFYAV
PWSCGTLGFLVAAEIRIIPAKKYVKLRFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYYKPWF
FKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCL
QQALHTFQNDIHVYPIWLCPFILPSQPGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEM

--------------------------------------------------------------
>In-frame_ENST00000371319_ENST00000371269_TCGA-24-1842-01A_SSBP3_chr1_54867534_-_DHCR24_chr1_55341720_length(transcript)=4040nt_BP=276nt
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAAAGTTAGCTTTATACGTCTACGAATATTTACTGCAC
GTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGAAAAAAACATCACGTTGGGAGAACCGCCTGGGTTTTTGCAC
TCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGTGAACATTCAAGTGAAGCAAAAGCCTTTCAT
GATTATATTGTCCGTGTGGAGCCCTTGGTGACCATGGGCCAGGTGACTGCCCTGCTGACCTCCATTGGCTGGACTCTCCCCGTGTTGCCT
GAGCTTGATGACCTCACAGTGGGGGGCTTGATCATGGGCACAGGCATCGAGTCATCATCCCACAAGTACGGCCTGTTCCAACACATCTGC
ACTGCTTACGAGCTGGTCCTGGCTGATGGCAGCTTTGTGCGATGCACTCCGTCCGAAAACTCAGACCTGTTCTATGCCGTACCCTGGTCC
TGTGGGACGCTGGGTTTCCTGGTGGCCGCTGAGATCCGCATCATCCCTGCCAAGAAGTACGTCAAGCTGCGTTTCGAGCCAGTGCGGGGC
CTGGAGGCTATCTGTGCCAAGTTCACCCACGAGTCCCAGCGGCAGGAGAACCACTTCGTGGAAGGGCTGCTCTACTCCCTGGATGAGGCT
GTCATTATGACAGGGGTCATGACAGATGAGGCAGAGCCCAGCAAGCTGAATAGCATTGGCAATTACTACAAGCCGTGGTTCTTTAAGCAT
GTGGAGAACTATCTGAAGACAAACCGAGAGGGCCTGGAGTACATTCCCTTGAGACACTACTACCACCGCCACACGCGCAGCATCTTCTGG
GAGCTCCAGGACATTATCCCCTTTGGCAACAACCCCATCTTCCGCTACCTCTTTGGCTGGATGGTGCCTCCCAAGATCTCCCTCCTGAAG
CTGACCCAGGGTGAGACCCTGCGCAAGCTGTACGAGCAGCACCACGTGGTGCAGGACATGCTGGTGCCCATGAAGTGCCTGCAGCAGGCC
CTGCACACCTTCCAAAACGACATCCACGTCTACCCCATCTGGCTGTGTCCGTTCATCCTGCCCAGCCAGCCAGGCCTAGTGCACCCCAAA
GGAAATGAGGCAGAGCTCTACATCGACATTGGAGCATATGGGGAGCCGCGTGTGAAACACTTTGAAGCCAGGTCCTGCATGAGGCAGCTG
GAGAAGTTTGTCCGCAGCGTGCATGGCTTCCAGATGCTGTATGCCGACTGCTACATGAACCGGGAGGAGTTCTGGGAGATGTTTGATGGC
TCCTTGTACCACAAGCTGCGAGAGAAGCTGGGTTGCCAGGACGCCTTCCCCGAGGTGTACGACAAGATCTGCAAGGCCGCCAGGCACTGA
GCTGGAGCCCGCCTGGAGAGACAGACACGTGTGAGTGGTCAGGCATCTTCCCTTCACTCAAGCTTGGCTGCTTTCCTAGATCCACACTTT
CAAAGAGAAACCCCTCCAGAACTCCCACCCTGACAGCCCAACACCACCTTCCTCCTGGCTTCCAGGGGGCAGCCCAGTGGAATGGAAAGA
ATGTGGGATTTGGAGTCAGACAAGCCTGAGTCCAGTTCCCCGTTTAGAACTCATTAGCTGTGTGACTCTGGGTGAGTCCCTTAACCCCTC
TGAGCCCGGGTCTCTTCATTAGTTGAAAGGGATAGTAATACCTACTTGCAGGTTGTTGTCATCTGAGTTGAGCACTGGTCACATTGAAGG
TGCTGGGTAAGTGGTAGCTCTTGTTGCTTCCCGTTCAGCGTCACATCTGCAGTGGAGCCTGAAAAGGCTCCACATTAGGTCACCTGTGCA
CAGCCATGGCTGGAATGATGAAGGGGATACGCTGGAGTTGCCCTGCCATCGCCTCCATCAGCCAGACGAGGTCCTCACAGGAGAAGGACA
GCTCTTCCCCACCCTGGGATCTCAGGAGGGCAGCCACGGAGTGGGGAGGCCCCAGATGCGCTGTGCCAAAGCCAGGTCCGAGGCCAAAGT
TCTCCCTGCCATCCTTGGTGCCGTCCTGCCCCTTCCTCCTTCATGCCTGGGCCTGCAGGCCCACCCCAGCCACCACTGAGTCCACTCGGA
GTGCCCTGTGTTCCTGGAGAAGGCATTCCAGGGTTGAATCTTGTCCCAGCCTCAGCCTGGGACACCTAGGTGGAGAGAGTGGTCTCCGCT
CTGAATTGGATCCAGGGGACCTGGGCTCATTCTTCTTGGCTCACCAACCCTGCAGGCCTCATCTTTCCCAAAACCCACTTTGTCTTGGTG
GGAGTGGGTCCGCGCTGCTCTGCAGCAGGGGCTGGGGAGTGGACAGCATCAGGTGGGAAAGTGGAGTCCACCCTCATGTTTCTGTAGGAT
TCTCACCGTGGGGCTGGAAGAAAAGAGCATCGACTTGATTTCTCCAACCACTCATCCCTCTTTTTCTTTCTTCCACCACTCCCCACCCCA
GCTGTAGTTAATTTCAGTGCCTTACAAATCCTAAGCTCAGAGAAAGTTCCATTTCCGTTCCAGAGGGAAGGGAACCTCCCTAGGTCCTTC
CCTGGCTTGTTATAACGCAAAGCTTGGTTGTTTATGCAACTCTATCTTAAGAACTGCCCAGCCTCAGCTGAAAACCCGAATCTGAGAAGG
AATTGCGTCATGTAAGGGAAGCTGGAATTAAGGGAGCTGAGCCAGTCATGGTTGTGGCGTGTGAGTCAGGAGACCTAGGTTTCAGCCCCT
CTCTACTGTCAGCGAGCTGTGCAACGTGGGCAAGTCATTGTCCTCTGAGCTGCAGTTTCCTCATCTGTCACATCGCTACAGACAAGACCT
CCCTGGAACCCTTCTGATTGTCTTAGACACTGTGGTTGCAAAACCCACGGAAAGCCTCATTTGTGTGGAAAGTCAGAGGAAAAATGATCC
AGTGGACACTTGGGGATTATCTGTCATTCAAGATCCTTCCTTCAACCCCAAGGTCAGCTCCCATCTCATTTCCAGAAAGGCTCATACCTG
GCTTGCAGGGAAGCATCTGTCTTGTCATTCCAGGTGCCAGAATCCTCTCAGAGTCATTGAAGGGTGTTCACCCATCCCACCCAAGGCTTG
GCACACTGCCAGTGTCTTAGCAGGGTCTTGTGAGGGCTGGGGGCATCCAGGCACTCAGAAGGCAAAGGAACCACCCTACCCATTTGGCCT
CTGGAGGGGGCAGAAGAAAGAAATAAACCTCATCCTATATTTTACAAAGCATGTGAATTCTGGCATTAGCTCTCATAGGAGACCCATGTG
CTTCCTTGCTCAGTGCAAAACTGATGATTCTACTTGCTGTAGATGAATGGTTAACACGAGCTAGTTAAACAGTGCCATTGTTTTGCCAGT
GAAGCCTCCAACCCTAAGCCACTGGGACGGTGGCCAGAGATGCCAGCAGCCTCTGTCGCCCTTAGTCATATAACCAAAATCCAGACCTTA
TCCACAACCCGGGGCTTGGAAAGGAAGGTATTTTGGAATCACACCCTCCGGTTATGTTGCTCCAGTAAAATCTTGCCTGGAAAGAGGCAG
TCTTCTTAGCATGGTGAGCTGAGTTCATGGCTTTTTTTTGTAGCCAGTCCTGTCCCTGGCCATCCATGTGATGGTTTTGGATGGAGTTAA
ACTTGATGCCAGTGGGCAGTGCATGTGGAAAGTATCAGAGTAAGGCTCTCCCCTCCAGAGCCCTGAGTTTCTTGGCTGCATGAAGGTTTT
CTTTAGAATCAGAATTGTAGCCAGTTTCTTTGGCCAGAAGGATGAATACTTGGATATTACTGAAAGGGAGGGGTGGAGATGGGTGTGGCA
GTGTATGGTGTGTGATTTTTATTTTCTTCTTTGGTCATGGGGGCCAAGGAGAAAGGCATGAATCTTCCCTGTCAGGCTCTTACAGCCACA

>In-frame_ENST00000371319_ENST00000371269_TCGA-24-1842-01A_SSBP3_chr1_54867534_-_DHCR24_chr1_55341720_length(amino acids)=479AA_start in transcript=0_stop in transcript=1439
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH
DYIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCTPSENSDLFYAVPWS
CGTLGFLVAAEIRIIPAKKYVKLRFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYYKPWFFKH
VENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQA
LHTFQNDIHVYPIWLCPFILPSQPGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDG

--------------------------------------------------------------
>In-frame_ENST00000357475_ENST00000371269_TCGA-24-1842-01A_SSBP3_chr1_54867534_-_DHCR24_chr1_55341720_length(transcript)=4255nt_BP=491nt
CCGCGGCCGGGGCTGACGCTTTGACAGCTGGAAAGAGCGCGGAGCCAGCGCCTGGGGGGGAGGGAGGGGAGCGCGGCGAGGAGAGCGCCA
GCGAGCGAGAGAGCGAGCGAGCGCCGGGGAGGGGGCCGGGAGCGAGGGGCAGCTCGGGAGAGCCGGAGCGGTAGCGGCGGCGGCGGCGGC
GGCGGCGAGGCTCGGCGCCCTCTTCCCTGCAAACCATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAA
AGTTAGCTTTATACGTCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGAAAAAA
ACATCACGTTGGGAGAACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACA
CTTGTGAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATATTGTCCGTGTGGAGCCCTTGGTGACCATGGGCCAGGTGACTGCCCTGC
TGACCTCCATTGGCTGGACTCTCCCCGTGTTGCCTGAGCTTGATGACCTCACAGTGGGGGGCTTGATCATGGGCACAGGCATCGAGTCAT
CATCCCACAAGTACGGCCTGTTCCAACACATCTGCACTGCTTACGAGCTGGTCCTGGCTGATGGCAGCTTTGTGCGATGCACTCCGTCCG
AAAACTCAGACCTGTTCTATGCCGTACCCTGGTCCTGTGGGACGCTGGGTTTCCTGGTGGCCGCTGAGATCCGCATCATCCCTGCCAAGA
AGTACGTCAAGCTGCGTTTCGAGCCAGTGCGGGGCCTGGAGGCTATCTGTGCCAAGTTCACCCACGAGTCCCAGCGGCAGGAGAACCACT
TCGTGGAAGGGCTGCTCTACTCCCTGGATGAGGCTGTCATTATGACAGGGGTCATGACAGATGAGGCAGAGCCCAGCAAGCTGAATAGCA
TTGGCAATTACTACAAGCCGTGGTTCTTTAAGCATGTGGAGAACTATCTGAAGACAAACCGAGAGGGCCTGGAGTACATTCCCTTGAGAC
ACTACTACCACCGCCACACGCGCAGCATCTTCTGGGAGCTCCAGGACATTATCCCCTTTGGCAACAACCCCATCTTCCGCTACCTCTTTG
GCTGGATGGTGCCTCCCAAGATCTCCCTCCTGAAGCTGACCCAGGGTGAGACCCTGCGCAAGCTGTACGAGCAGCACCACGTGGTGCAGG
ACATGCTGGTGCCCATGAAGTGCCTGCAGCAGGCCCTGCACACCTTCCAAAACGACATCCACGTCTACCCCATCTGGCTGTGTCCGTTCA
TCCTGCCCAGCCAGCCAGGCCTAGTGCACCCCAAAGGAAATGAGGCAGAGCTCTACATCGACATTGGAGCATATGGGGAGCCGCGTGTGA
AACACTTTGAAGCCAGGTCCTGCATGAGGCAGCTGGAGAAGTTTGTCCGCAGCGTGCATGGCTTCCAGATGCTGTATGCCGACTGCTACA
TGAACCGGGAGGAGTTCTGGGAGATGTTTGATGGCTCCTTGTACCACAAGCTGCGAGAGAAGCTGGGTTGCCAGGACGCCTTCCCCGAGG
TGTACGACAAGATCTGCAAGGCCGCCAGGCACTGAGCTGGAGCCCGCCTGGAGAGACAGACACGTGTGAGTGGTCAGGCATCTTCCCTTC
ACTCAAGCTTGGCTGCTTTCCTAGATCCACACTTTCAAAGAGAAACCCCTCCAGAACTCCCACCCTGACAGCCCAACACCACCTTCCTCC
TGGCTTCCAGGGGGCAGCCCAGTGGAATGGAAAGAATGTGGGATTTGGAGTCAGACAAGCCTGAGTCCAGTTCCCCGTTTAGAACTCATT
AGCTGTGTGACTCTGGGTGAGTCCCTTAACCCCTCTGAGCCCGGGTCTCTTCATTAGTTGAAAGGGATAGTAATACCTACTTGCAGGTTG
TTGTCATCTGAGTTGAGCACTGGTCACATTGAAGGTGCTGGGTAAGTGGTAGCTCTTGTTGCTTCCCGTTCAGCGTCACATCTGCAGTGG
AGCCTGAAAAGGCTCCACATTAGGTCACCTGTGCACAGCCATGGCTGGAATGATGAAGGGGATACGCTGGAGTTGCCCTGCCATCGCCTC
CATCAGCCAGACGAGGTCCTCACAGGAGAAGGACAGCTCTTCCCCACCCTGGGATCTCAGGAGGGCAGCCACGGAGTGGGGAGGCCCCAG
ATGCGCTGTGCCAAAGCCAGGTCCGAGGCCAAAGTTCTCCCTGCCATCCTTGGTGCCGTCCTGCCCCTTCCTCCTTCATGCCTGGGCCTG
CAGGCCCACCCCAGCCACCACTGAGTCCACTCGGAGTGCCCTGTGTTCCTGGAGAAGGCATTCCAGGGTTGAATCTTGTCCCAGCCTCAG
CCTGGGACACCTAGGTGGAGAGAGTGGTCTCCGCTCTGAATTGGATCCAGGGGACCTGGGCTCATTCTTCTTGGCTCACCAACCCTGCAG
GCCTCATCTTTCCCAAAACCCACTTTGTCTTGGTGGGAGTGGGTCCGCGCTGCTCTGCAGCAGGGGCTGGGGAGTGGACAGCATCAGGTG
GGAAAGTGGAGTCCACCCTCATGTTTCTGTAGGATTCTCACCGTGGGGCTGGAAGAAAAGAGCATCGACTTGATTTCTCCAACCACTCAT
CCCTCTTTTTCTTTCTTCCACCACTCCCCACCCCAGCTGTAGTTAATTTCAGTGCCTTACAAATCCTAAGCTCAGAGAAAGTTCCATTTC
CGTTCCAGAGGGAAGGGAACCTCCCTAGGTCCTTCCCTGGCTTGTTATAACGCAAAGCTTGGTTGTTTATGCAACTCTATCTTAAGAACT
GCCCAGCCTCAGCTGAAAACCCGAATCTGAGAAGGAATTGCGTCATGTAAGGGAAGCTGGAATTAAGGGAGCTGAGCCAGTCATGGTTGT
GGCGTGTGAGTCAGGAGACCTAGGTTTCAGCCCCTCTCTACTGTCAGCGAGCTGTGCAACGTGGGCAAGTCATTGTCCTCTGAGCTGCAG
TTTCCTCATCTGTCACATCGCTACAGACAAGACCTCCCTGGAACCCTTCTGATTGTCTTAGACACTGTGGTTGCAAAACCCACGGAAAGC
CTCATTTGTGTGGAAAGTCAGAGGAAAAATGATCCAGTGGACACTTGGGGATTATCTGTCATTCAAGATCCTTCCTTCAACCCCAAGGTC
AGCTCCCATCTCATTTCCAGAAAGGCTCATACCTGGCTTGCAGGGAAGCATCTGTCTTGTCATTCCAGGTGCCAGAATCCTCTCAGAGTC
ATTGAAGGGTGTTCACCCATCCCACCCAAGGCTTGGCACACTGCCAGTGTCTTAGCAGGGTCTTGTGAGGGCTGGGGGCATCCAGGCACT
CAGAAGGCAAAGGAACCACCCTACCCATTTGGCCTCTGGAGGGGGCAGAAGAAAGAAATAAACCTCATCCTATATTTTACAAAGCATGTG
AATTCTGGCATTAGCTCTCATAGGAGACCCATGTGCTTCCTTGCTCAGTGCAAAACTGATGATTCTACTTGCTGTAGATGAATGGTTAAC
ACGAGCTAGTTAAACAGTGCCATTGTTTTGCCAGTGAAGCCTCCAACCCTAAGCCACTGGGACGGTGGCCAGAGATGCCAGCAGCCTCTG
TCGCCCTTAGTCATATAACCAAAATCCAGACCTTATCCACAACCCGGGGCTTGGAAAGGAAGGTATTTTGGAATCACACCCTCCGGTTAT
GTTGCTCCAGTAAAATCTTGCCTGGAAAGAGGCAGTCTTCTTAGCATGGTGAGCTGAGTTCATGGCTTTTTTTTGTAGCCAGTCCTGTCC
CTGGCCATCCATGTGATGGTTTTGGATGGAGTTAAACTTGATGCCAGTGGGCAGTGCATGTGGAAAGTATCAGAGTAAGGCTCTCCCCTC
CAGAGCCCTGAGTTTCTTGGCTGCATGAAGGTTTTCTTTAGAATCAGAATTGTAGCCAGTTTCTTTGGCCAGAAGGATGAATACTTGGAT
ATTACTGAAAGGGAGGGGTGGAGATGGGTGTGGCAGTGTATGGTGTGTGATTTTTATTTTCTTCTTTGGTCATGGGGGCCAAGGAGAAAG
GCATGAATCTTCCCTGTCAGGCTCTTACAGCCACAGGCACTGTGTCTACTGTCTGGAAGACATGTCCCCATGGCTGTGGGGCCGCTGCTT

>In-frame_ENST00000357475_ENST00000371269_TCGA-24-1842-01A_SSBP3_chr1_54867534_-_DHCR24_chr1_55341720_length(amino acids)=482AA_start in transcript=206_stop in transcript=1654
MQTMFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAK
AFHDYIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCTPSENSDLFYAV
PWSCGTLGFLVAAEIRIIPAKKYVKLRFEPVRGLEAICAKFTHESQRQENHFVEGLLYSLDEAVIMTGVMTDEAEPSKLNSIGNYYKPWF
FKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCL
QQALHTFQNDIHVYPIWLCPFILPSQPGLVHPKGNEAELYIDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEM

--------------------------------------------------------------

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Fusion Gene PPI Analysis for SSBP3-DHCR24


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for SSBP3-DHCR24


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for SSBP3-DHCR24


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneDHCR24C1865596Desmosterolosis5CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
TgeneDHCR24C0002395Alzheimer's Disease1CTD_human
TgeneDHCR24C0011265Presenile dementia1CTD_human
TgeneDHCR24C0034362Q Fever1CTD_human
TgeneDHCR24C0276496Familial Alzheimer Disease (FAD)1CTD_human
TgeneDHCR24C0494463Alzheimer Disease, Late Onset1CTD_human
TgeneDHCR24C0519066Acute Q fever1CTD_human
TgeneDHCR24C0546126Acute Confusional Senile Dementia1CTD_human
TgeneDHCR24C0750900Alzheimer's Disease, Focal Onset1CTD_human
TgeneDHCR24C0750901Alzheimer Disease, Early Onset1CTD_human
TgeneDHCR24C1443892Chronic Q Fever1CTD_human
TgeneDHCR24C1510586Autism Spectrum Disorders1CTD_human
TgeneDHCR24C2973787Coxiella burnetii Infection1CTD_human