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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:STAG2-C16orf45 (FusionGDB2 ID:86492) |
Fusion Gene Summary for STAG2-C16orf45 |
Fusion gene summary |
Fusion gene information | Fusion gene name: STAG2-C16orf45 | Fusion gene ID: 86492 | Hgene | Tgene | Gene symbol | STAG2 | C16orf45 | Gene ID | 10735 | 89927 |
Gene name | stromal antigen 2 | bMERB domain containing 1 | |
Synonyms | MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1 | C16orf45|MINP | |
Cytomap | Xq25 | 16p13.11 | |
Type of gene | protein-coding | protein-coding | |
Description | cohesin subunit SA-2SCC3 homolog 2 | bMERB domain-containing protein 1migration inhibitory proteinuncharacterized protein C16orf45 | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000218089, ENST00000469481, ENST00000354548, ENST00000371160, ENST00000371157, ENST00000371145, ENST00000371144, | ENST00000300006, ENST00000566490, ENST00000452191, ENST00000561692, ENST00000565913, | |
Fusion gene scores | * DoF score | 14 X 16 X 7=1568 | 14 X 11 X 8=1232 |
# samples | 20 | 16 | |
** MAII score | log2(20/1568*10)=-2.97085365434048 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(16/1232*10)=-2.94485844580754 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: STAG2 [Title/Abstract] AND C16orf45 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | STAG2(123220620)-C16orf45(15609162), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across STAG2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across C16orf45 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-69-7979-01A | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
ChimerDB4 | LUAD | TCGA-69-7979-01A | STAG2 | chrX | 123220620 | - | C16orf45 | chr16 | 15609162 | + |
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Fusion Gene ORF analysis for STAG2-C16orf45 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000218089 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000218089 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000218089 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000218089 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000218089 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
intron-3CDS | ENST00000469481 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
intron-3CDS | ENST00000469481 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
intron-3CDS | ENST00000469481 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
intron-intron | ENST00000469481 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
intron-intron | ENST00000469481 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000354548 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000354548 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000354548 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000354548 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000354548 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371160 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371160 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371160 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371160 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371160 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371157 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371157 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371157 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371157 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371157 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371145 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371145 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371145 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371145 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371145 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371144 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371144 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
In-frame | ENST00000371144 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371144 | ENST00000561692 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
5CDS-intron | ENST00000371144 | ENST00000565913 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000218089 | STAG2 | chrX | 123220620 | + | ENST00000300006 | C16orf45 | chr16 | 15609162 | + | 5726 | 3787 | 510 | 4295 | 1261 |
ENST00000218089 | STAG2 | chrX | 123220620 | + | ENST00000566490 | C16orf45 | chr16 | 15609162 | + | 5356 | 3787 | 510 | 4136 | 1208 |
ENST00000218089 | STAG2 | chrX | 123220620 | + | ENST00000452191 | C16orf45 | chr16 | 15609162 | + | 5541 | 3787 | 510 | 4295 | 1261 |
ENST00000354548 | STAG2 | chrX | 123220620 | + | ENST00000300006 | C16orf45 | chr16 | 15609162 | + | 5358 | 3419 | 142 | 3927 | 1261 |
ENST00000354548 | STAG2 | chrX | 123220620 | + | ENST00000566490 | C16orf45 | chr16 | 15609162 | + | 4988 | 3419 | 142 | 3768 | 1208 |
ENST00000354548 | STAG2 | chrX | 123220620 | + | ENST00000452191 | C16orf45 | chr16 | 15609162 | + | 5173 | 3419 | 142 | 3927 | 1261 |
ENST00000371160 | STAG2 | chrX | 123220620 | + | ENST00000300006 | C16orf45 | chr16 | 15609162 | + | 5506 | 3567 | 290 | 4075 | 1261 |
ENST00000371160 | STAG2 | chrX | 123220620 | + | ENST00000566490 | C16orf45 | chr16 | 15609162 | + | 5136 | 3567 | 290 | 3916 | 1208 |
ENST00000371160 | STAG2 | chrX | 123220620 | + | ENST00000452191 | C16orf45 | chr16 | 15609162 | + | 5321 | 3567 | 290 | 4075 | 1261 |
ENST00000371157 | STAG2 | chrX | 123220620 | + | ENST00000300006 | C16orf45 | chr16 | 15609162 | + | 5452 | 3513 | 236 | 4021 | 1261 |
ENST00000371157 | STAG2 | chrX | 123220620 | + | ENST00000566490 | C16orf45 | chr16 | 15609162 | + | 5082 | 3513 | 236 | 3862 | 1208 |
ENST00000371157 | STAG2 | chrX | 123220620 | + | ENST00000452191 | C16orf45 | chr16 | 15609162 | + | 5267 | 3513 | 236 | 4021 | 1261 |
ENST00000371145 | STAG2 | chrX | 123220620 | + | ENST00000300006 | C16orf45 | chr16 | 15609162 | + | 5497 | 3558 | 281 | 4066 | 1261 |
ENST00000371145 | STAG2 | chrX | 123220620 | + | ENST00000566490 | C16orf45 | chr16 | 15609162 | + | 5127 | 3558 | 281 | 3907 | 1208 |
ENST00000371145 | STAG2 | chrX | 123220620 | + | ENST00000452191 | C16orf45 | chr16 | 15609162 | + | 5312 | 3558 | 281 | 4066 | 1261 |
ENST00000371144 | STAG2 | chrX | 123220620 | + | ENST00000300006 | C16orf45 | chr16 | 15609162 | + | 5496 | 3557 | 280 | 4065 | 1261 |
ENST00000371144 | STAG2 | chrX | 123220620 | + | ENST00000566490 | C16orf45 | chr16 | 15609162 | + | 5126 | 3557 | 280 | 3906 | 1208 |
ENST00000371144 | STAG2 | chrX | 123220620 | + | ENST00000452191 | C16orf45 | chr16 | 15609162 | + | 5311 | 3557 | 280 | 4065 | 1261 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000218089 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000345222 | 0.99965477 |
ENST00000218089 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000472449 | 0.9995276 |
ENST00000218089 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000380015 | 0.99961996 |
ENST00000354548 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000309273 | 0.9996908 |
ENST00000354548 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000470441 | 0.9995296 |
ENST00000354548 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000349145 | 0.99965084 |
ENST00000371160 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000401036 | 0.99959904 |
ENST00000371160 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000629853 | 0.99937016 |
ENST00000371160 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000454598 | 0.9995454 |
ENST00000371157 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000348891 | 0.9996511 |
ENST00000371157 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000531271 | 0.99946874 |
ENST00000371157 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000393229 | 0.9996068 |
ENST00000371145 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000318003 | 0.99968207 |
ENST00000371145 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000472523 | 0.99952745 |
ENST00000371145 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000352876 | 0.99964714 |
ENST00000371144 | ENST00000300006 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000316403 | 0.9996836 |
ENST00000371144 | ENST00000566490 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000469625 | 0.99953043 |
ENST00000371144 | ENST00000452191 | STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609162 | + | 0.000351007 | 0.99964905 |
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Fusion Genomic Features for STAG2-C16orf45 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609161 | + | 8.07E-05 | 0.9999193 |
STAG2 | chrX | 123220620 | + | C16orf45 | chr16 | 15609161 | + | 8.07E-05 | 0.9999193 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for STAG2-C16orf45 |
Go to FGviewer for the breakpoints of chrX:123220620-chr16:15609162 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000218089 | + | 30 | 35 | 293_378 | 1092.3333333333333 | 1269.0 | Domain | SCD |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371144 | + | 30 | 34 | 293_378 | 1092.3333333333333 | 1232.0 | Domain | SCD |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371145 | + | 30 | 35 | 293_378 | 1092.3333333333333 | 1269.0 | Domain | SCD |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371157 | + | 29 | 33 | 293_378 | 1092.3333333333333 | 1232.0 | Domain | SCD |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371160 | + | 30 | 34 | 293_378 | 1092.3333333333333 | 1232.0 | Domain | SCD |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000218089 | + | 30 | 35 | 1096_1101 | 1092.3333333333333 | 1269.0 | Compositional bias | Note=Poly-Ser |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371144 | + | 30 | 34 | 1096_1101 | 1092.3333333333333 | 1232.0 | Compositional bias | Note=Poly-Ser |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371145 | + | 30 | 35 | 1096_1101 | 1092.3333333333333 | 1269.0 | Compositional bias | Note=Poly-Ser |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371157 | + | 29 | 33 | 1096_1101 | 1092.3333333333333 | 1232.0 | Compositional bias | Note=Poly-Ser |
Hgene | STAG2 | chrX:123220620 | chr16:15609162 | ENST00000371160 | + | 30 | 34 | 1096_1101 | 1092.3333333333333 | 1232.0 | Compositional bias | Note=Poly-Ser |
Tgene | C16orf45 | chrX:123220620 | chr16:15609162 | ENST00000300006 | 0 | 6 | 3_150 | 35.333333333333336 | 205.0 | Domain | bMERB | |
Tgene | C16orf45 | chrX:123220620 | chr16:15609162 | ENST00000452191 | 0 | 6 | 3_150 | 18.333333333333332 | 188.0 | Domain | bMERB |
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Fusion Gene Sequence for STAG2-C16orf45 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000218089_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5726nt_BP=3787nt GTGGCCGACAGATGGCGCCTGCGCGTTCCATTCGCCTCCAAGTCGCCGAAGAGCGAACACCCCAAACAATCCCGAAGCGCCACCAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAACCCCGCCGGATCCGACCGCCACTTTCAAAACCCCCCACCGCTCTAG AACCGCGGGAGCTTCCGTCCCTGAGTAGAATTCGAGGGTGTAAAGAAGAGGAAGGGGAAAAATATCTTGTACCAGCCCAGGGGTGAAGAA GCCCCCGGCCTGAGAAAGAAGGAGGAGTGGGGGAGGCGAACAGTCTCGTTGCTGCCTCTGTGTACGCTGAGGGGGGAGGTGGCCACCGAG TACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAGAAAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTT ACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGAT TTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGC AAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATG AATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGAT GATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTT GTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCA CTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATC ATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACC CTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCA GAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAA ATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAA GAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAA GGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGG TTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGT AGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAA TTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTT GTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAG CTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCT CTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCA AAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTA GATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGAT GCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGT AATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAA GATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCC CATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTT ATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGT TTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATT CTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCA TTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGAT GAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAAT ACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATA GACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGA TCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATT GCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTT GATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATG TCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATT AGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTT TCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTC CGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAG CTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTG GTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGA ATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACG GTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCC ATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGC CCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCAT GGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCC ACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAA TCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTC CTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGT AAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCA TTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAA GCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGAT GCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGT CCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGC CTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGA GAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATC ATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGT TTTAAAAAAGTCTTTTTTTGTGCATTTTTTCATCGTTGACATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCA >In-frame_ENST00000218089_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=510_stop in transcript=4295 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000218089_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5356nt_BP=3787nt GTGGCCGACAGATGGCGCCTGCGCGTTCCATTCGCCTCCAAGTCGCCGAAGAGCGAACACCCCAAACAATCCCGAAGCGCCACCAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAACCCCGCCGGATCCGACCGCCACTTTCAAAACCCCCCACCGCTCTAG AACCGCGGGAGCTTCCGTCCCTGAGTAGAATTCGAGGGTGTAAAGAAGAGGAAGGGGAAAAATATCTTGTACCAGCCCAGGGGTGAAGAA GCCCCCGGCCTGAGAAAGAAGGAGGAGTGGGGGAGGCGAACAGTCTCGTTGCTGCCTCTGTGTACGCTGAGGGGGGAGGTGGCCACCGAG TACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAGAAAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTT ACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGAT TTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGC AAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATG AATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGAT GATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTT GTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCA CTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATC ATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACC CTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCA GAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAA ATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAA GAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAA GGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGG TTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGT AGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAA TTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTT GTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAG CTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCT CTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCA AAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTA GATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGAT GCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGT AATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAA GATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCC CATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTT ATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGT TTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATT CTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCA TTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGAT GAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAAT ACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATA GACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGA TCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATT GCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTT GATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATG TCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATT AGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTT TCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTC CGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAG CTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTG GTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAA GCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCC CTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAA GGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACC GTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCA TATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTC TCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCC GTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCC CATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACA GCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGA ACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCA CAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAG ATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCG GTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACC >In-frame_ENST00000218089_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1208AA_start in transcript=510_stop in transcript=4136 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE -------------------------------------------------------------- >In-frame_ENST00000218089_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5541nt_BP=3787nt GTGGCCGACAGATGGCGCCTGCGCGTTCCATTCGCCTCCAAGTCGCCGAAGAGCGAACACCCCAAACAATCCCGAAGCGCCACCAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAACCCCGCCGGATCCGACCGCCACTTTCAAAACCCCCCACCGCTCTAG AACCGCGGGAGCTTCCGTCCCTGAGTAGAATTCGAGGGTGTAAAGAAGAGGAAGGGGAAAAATATCTTGTACCAGCCCAGGGGTGAAGAA GCCCCCGGCCTGAGAAAGAAGGAGGAGTGGGGGAGGCGAACAGTCTCGTTGCTGCCTCTGTGTACGCTGAGGGGGGAGGTGGCCACCGAG TACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAGAAAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTT ACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGAT TTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGC AAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATG AATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGAT GATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTT GTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCA CTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATC ATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACC CTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCA GAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAA ATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAA GAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAA GGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGG TTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGT AGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAA TTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTT GTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAG CTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCT CTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCA AAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTA GATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGAT GCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGT AATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAA GATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCC CATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTT ATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGT TTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATT CTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCA TTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGAT GAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAAT ACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATA GACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGA TCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATT GCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTT GATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATG TCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATT AGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTT TCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTC CGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAG CTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTG GTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGA ATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACG GTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCC ATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGC CCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCAT GGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCC ACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAA TCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTC CTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGT AAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCA TTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAA GCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGAT GCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGT CCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGC CTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGA GAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATC >In-frame_ENST00000218089_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=510_stop in transcript=4295 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000354548_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5358nt_BP=3419nt AGGCGAACAGTCTCGTTGCTGCCTCTGTGTACGCTGAGGGGGGAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGT AAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCT ACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTG TAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCA TCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGAT AGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGC AGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCAT GGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGA TGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGC TATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAA TAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAA TATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGG CATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGT AAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGA TAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGA AGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTA CAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGAC ATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAA AGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGA AATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAA GAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGA AAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATT GCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGA GTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCT GCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCT TTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGC ACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAA ACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGA TATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTC TGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAG TAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGC AGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAAT TCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTC TACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCT ACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCT GAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCG AAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAAT CAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAA TCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGT CTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAA CTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAA GAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTT AAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAA GACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGAC CCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACT GTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCC CCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCT CTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCAC CATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCA GCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCG AGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTC TCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGAT GTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAG GATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCAT TGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGA CTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAA AAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAA AGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTAAAAA AGTCTTTTTTTGTGCATTTTTTCATCGTTGACATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCATCTTC >In-frame_ENST00000354548_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=142_stop in transcript=3927 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000354548_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=4988nt_BP=3419nt AGGCGAACAGTCTCGTTGCTGCCTCTGTGTACGCTGAGGGGGGAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGT AAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCT ACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTG TAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCA TCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGAT AGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGC AGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCAT GGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGA TGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGC TATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAA TAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAA TATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGG CATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGT AAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGA TAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGA AGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTA CAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGAC ATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAA AGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGA AATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAA GAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGA AAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATT GCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGA GTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCT GCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCT TTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGC ACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAA ACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGA TATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTC TGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAG TAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGC AGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAAT TCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTC TACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCT ACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCT GAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCG AAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAAT CAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAA TCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGT CTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAA CTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAA GAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGG TGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCA TGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCC CGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATG GTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCA CTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAAT CTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCC TCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTA AAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCAT TGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAG CTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATG CCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTC CCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCC TGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAG >In-frame_ENST00000354548_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1208AA_start in transcript=142_stop in transcript=3768 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE -------------------------------------------------------------- >In-frame_ENST00000354548_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5173nt_BP=3419nt AGGCGAACAGTCTCGTTGCTGCCTCTGTGTACGCTGAGGGGGGAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGT AAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCT ACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTG TAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCA TCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGAT AGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGC AGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCAT GGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGA TGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGC TATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAA TAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAA TATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGG CATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGT AAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGA TAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGA AGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTA CAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGAC ATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAA AGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGA AATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAA GAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGA AAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATT GCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGA GTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCT GCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCT TTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGC ACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAA ACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGA TATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTC TGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAG TAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGC AGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAAT TCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTC TACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCT ACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCT GAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCG AAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAAT CAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAA TCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGT CTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAA CTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAA GAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTT AAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAA GACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGAC CCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACT GTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCC CCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCT CTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCAC CATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCA GCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCG AGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTC TCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGAT GTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAG GATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCAT TGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGA CTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAA AAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAA >In-frame_ENST00000354548_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=142_stop in transcript=3927 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371160_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5506nt_BP=3567nt GGGTGGCCCAAAATGGAGAACGCGGAGCAGCGCAAGATGGAGGCTCCGCTTCTCTGTGTAGCAGTAGATTTAGGTTCCTTTTCTCCGGCA GGCTCCTAAGCCTAGGAGAGCCCGAACTGGAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCG AGGCCCGACTTCGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTG TTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTG ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGG GCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGT TGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCAC TTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGA TAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCA GTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTC TTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGG CACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGC TAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTG TACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTC TTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGC TTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAAT ATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCT ATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGG AGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTAC ATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGG AAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTG AATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCA CTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGT ACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACA CAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAA GAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATG CATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACA AACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGC AACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAAC ATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGT CAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCT TCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATT TACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATA ATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGC AACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGAC GTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAG AGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAG ACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTT ACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAA AATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAA CCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCA TGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCA AACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCG AGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAG CCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCG GGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCA TTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGC CTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCA CTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAAC TGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTA GCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCC CCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCC GCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGG CCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCA GAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCT TTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAA CTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAG CCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAG TTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAA AAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTAAAAAAGTCTTTTTTTGTGCATTTTTTCATCGTTGAC ATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCATCTTCCACATCATTAAAAGCTCTTTGTAAACATTAAA >In-frame_ENST00000371160_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=290_stop in transcript=4075 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371160_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5136nt_BP=3567nt GGGTGGCCCAAAATGGAGAACGCGGAGCAGCGCAAGATGGAGGCTCCGCTTCTCTGTGTAGCAGTAGATTTAGGTTCCTTTTCTCCGGCA GGCTCCTAAGCCTAGGAGAGCCCGAACTGGAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCG AGGCCCGACTTCGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTG TTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTG ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGG GCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGT TGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCAC TTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGA TAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCA GTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTC TTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGG CACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGC TAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTG TACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTC TTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGC TTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAAT ATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCT ATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGG AGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTAC ATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGG AAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTG AATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCA CTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGT ACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACA CAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAA GAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATG CATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACA AACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGC AACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAAC ATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGT CAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCT TCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATT TACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATA ATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGC AACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGAC GTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAG AGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAG ACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTT ACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAA AATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAA CCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCA TGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCA AACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCG AGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGAT TGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATA GCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCA GGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTC TGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTG AATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCAC CCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCAC ATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCAC ATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTG GAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATG GGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACA CGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGC CAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCG TGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATT >In-frame_ENST00000371160_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1208AA_start in transcript=290_stop in transcript=3916 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE -------------------------------------------------------------- >In-frame_ENST00000371160_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5321nt_BP=3567nt GGGTGGCCCAAAATGGAGAACGCGGAGCAGCGCAAGATGGAGGCTCCGCTTCTCTGTGTAGCAGTAGATTTAGGTTCCTTTTCTCCGGCA GGCTCCTAAGCCTAGGAGAGCCCGAACTGGAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCG AGGCCCGACTTCGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTG TTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTG ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGG GCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGT TGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCAC TTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGA TAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCA GTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTC TTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGG CACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGC TAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTG TACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTC TTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGC TTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAAT ATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCT ATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGG AGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTAC ATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGG AAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTG AATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCA CTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGT ACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACA CAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAA GAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATG CATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACA AACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGC AACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAAC ATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGT CAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCT TCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATT TACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATA ATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGC AACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGAC GTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAG AGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAG ACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTT ACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAA AATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAA CCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCA TGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCA AACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCG AGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAG CCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCG GGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCA TTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGC CTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCA CTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAAC TGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTA GCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCC CCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCC GCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGG CCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCA GAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCT TTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAA CTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAG CCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAG TTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAA >In-frame_ENST00000371160_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=290_stop in transcript=4075 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371157_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5452nt_BP=3513nt CTTCCTAGAGAGGGAACAACATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGG GGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCGAGGCCCGACTTCGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCC ACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTA ATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAA CTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATG GTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATT GGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCA CAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTA CCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATAT ATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGG CAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAAC GGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAG AAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGA TTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTG AAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCA AGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTG AAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTC TCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTA AGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGC TGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGA TTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGG AGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATG CAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCT TATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATG AAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATT TTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATG ACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTC ACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAA AGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGT GTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGC AGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAG CCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAG CTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACA AAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCAT CCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCA TGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATA TTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCAC TCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTG GAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCAC TCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGG AAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGC AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGC AGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCA AGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGG CCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGG GGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGT GACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTC CTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTT CTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTA GCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCT CCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAG ATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGT GCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTC TGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCA GCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCG TCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGT GTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAA ATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTT TAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAAAATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTA AAAAAGTCTTTTTTTGTGCATTTTTTCATCGTTGACATCATATTGTGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCAT >In-frame_ENST00000371157_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=236_stop in transcript=4021 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371157_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5082nt_BP=3513nt CTTCCTAGAGAGGGAACAACATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGG GGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCGAGGCCCGACTTCGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCC ACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTA ATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAA CTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATG GTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATT GGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCA CAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTA CCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATAT ATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGG CAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAAC GGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAG AAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGA TTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTG AAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCA AGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTG AAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTC TCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTA AGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGC TGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGA TTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGG AGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATG CAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCT TATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATG AAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATT TTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATG ACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTC ACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAA AGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGT GTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGC AGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAG CCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAG CTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACA AAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCAT CCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCA TGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATA TTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCAC TCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTG GAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCAC TCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGG AAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGC AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGC AGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCC ACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGG GCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCA AGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCG CATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATC TCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAA CAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCT GTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATC TGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGT CCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCG GAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGA GATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTG TGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTAC AGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATC >In-frame_ENST00000371157_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1208AA_start in transcript=236_stop in transcript=3862 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE -------------------------------------------------------------- >In-frame_ENST00000371157_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5267nt_BP=3513nt CTTCCTAGAGAGGGAACAACATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGG GGAAGGCGATTGGCATCGATCTCTCCATCCCTTCCGAGGCCCGACTTCGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCC ACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTA ATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAA CTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGGAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATG GTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGTTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATT GGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCTTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCA CAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAAAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTA CCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGAATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATAT ATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATTGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGG CAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCTTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAAC GGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCTGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAG AAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGA TTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAGTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTG AAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCA AGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTG AAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTC TCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTA AGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGCAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGC TGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACTTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGA TTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGG AGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTTTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATG CAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTTGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCT TATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATG AAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACTGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATT TTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATG ACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAAAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTC ACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAAGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAA AGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGACCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGT GTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCGTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGC AGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAG CCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGCATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAG CTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGGAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACA AAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTTTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCAT CCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTTAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCA TGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCCGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATA TTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAACAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCAC TCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTCTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTG GAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACCATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCAC TCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGG AAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGC AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGC AGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCA AGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGG CCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGG GGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGT GACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTC CTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTT CTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTA GCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCT CCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAG ATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGT GCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTC TGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCA GCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCG TCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGT GTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGTTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAA ATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTTTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTT >In-frame_ENST00000371157_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=236_stop in transcript=4021 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371145_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5497nt_BP=3558nt ATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGAT CTCTCCATCCCTTCCGAGGCCCGACTTCGGTGGCCACCGAGTACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAG AAAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAG ATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATT TTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTG GAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAG TTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACC TTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAA AAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTG AATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGAT TGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATC TTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCC TGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGAT ACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACA GTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATA ACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTG CAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGG TTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAA TGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATG CAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCAC TTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATC CTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTT TTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATT TGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAG ATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAAC TGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGG TATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGA AAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTA AGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGA CCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGC GTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAAC AGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAG CATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATG GAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTT TTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTT TAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATC CGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAA CAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATT CTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAAC CATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGC CAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATG ACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGA AGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAA GGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCC GGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCC AGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGG GGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACC CTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATC CAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGG GGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTC TCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTC TCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCC CATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTG GCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATG CTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGA ACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCC GTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAG TTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTT TTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAA AATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTAAAAAAGTCTTTTTTTGTGCATTTTTTCATCGTTGACATCATATTG TGGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCATCTTCCACATCATTAAAAGCTCTTTGTAAACATTAAACACTCTTCA >In-frame_ENST00000371145_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=281_stop in transcript=4066 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371145_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5127nt_BP=3558nt ATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGAT CTCTCCATCCCTTCCGAGGCCCGACTTCGGTGGCCACCGAGTACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAG AAAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAG ATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATT TTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTG GAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAG TTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACC TTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAA AAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTG AATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGAT TGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATC TTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCC TGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGAT ACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACA GTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATA ACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTG CAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGG TTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAA TGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATG CAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCAC TTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATC CTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTT TTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATT TGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAG ATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAAC TGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGG TATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGA AAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTA AGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGA CCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGC GTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAAC AGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAG CATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATG GAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTT TTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTT TAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATC CGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAA CAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATT CTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAAC CATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGC CAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATG ACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGA AGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAA GGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGG GCCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATT TCACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCT GGCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACT GTTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTG GGAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGC TCTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCC GTGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGC TTCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCC TGGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGA GTAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTT GTAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACT TCAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCC >In-frame_ENST00000371145_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1208AA_start in transcript=281_stop in transcript=3907 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE -------------------------------------------------------------- >In-frame_ENST00000371145_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5312nt_BP=3558nt ATTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGAT CTCTCCATCCCTTCCGAGGCCCGACTTCGGTGGCCACCGAGTACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAG AAAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAG ATGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATT TTGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTG GAAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAG TTGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACC TTATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAA AAATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTG AATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGAT TGTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATC TTAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCC TGCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGAT ACCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACA GTTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATA ACAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTG CAGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGG TTTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAA TGATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATG CAGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCAC TTAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATC CTCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTT TTGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATT TGGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAG ATGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAAC TGATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGG TATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGA AAACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTA AGATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGA CCAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGC GTGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAAC AGGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAG CATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATG GAGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTT TTAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTT TAACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATC CGCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAA CAGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATT CTTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAAC CATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGC CAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATG ACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGA AGCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAA GGGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCC GGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCC AGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGG GGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACC CTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATC CAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGG GGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTC TCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTC TCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCC CATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTG GCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATG CTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGA ACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCC GTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAG TTAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTT TTTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAA >In-frame_ENST00000371145_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=281_stop in transcript=4066 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371144_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5496nt_BP=3557nt TTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATC TCTCCATCCCTTCCGAGGCCCGACTTCGGTGGCCACCGAGTACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAGA AAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGA TGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTT TGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGG AAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGT TGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCT TATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAA AATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGA ATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATT GTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCT TAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCT GCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATA CCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAG TTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAA CAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGC AGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGT TTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAAT GATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGC AGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACT TAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCC TCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTT TGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTT GGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGA TGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACT GATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGT ATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAA AACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAA GATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGAC CAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCG TGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACA GGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGC ATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGG AGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTT TAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTT AACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCC GCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAAC AGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTC TTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACC ATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCC AGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGA CATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAA GCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAG GGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCG GGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCA GTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGG GCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCC TGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCC AAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGG GCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCT CAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCT CGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCC ATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGG CATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGC TGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAA CAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCG TGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGT TAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTT TTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAAA ATTATTCCTCCAACTAGAGACCACTCTGATGTTTCGACGTTTTAAAAAAGTCTTTTTTTGTGCATTTTTTCATCGTTGACATCATATTGT GGTATCATTTATAACCAGTTTTTTCCTACTTATTATACCACCATCTTCCACATCATTAAAAGCTCTTTGTAAACATTAAACACTCTTCAT >In-frame_ENST00000371144_ENST00000300006_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=280_stop in transcript=4065 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- >In-frame_ENST00000371144_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5126nt_BP=3557nt TTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATC TCTCCATCCCTTCCGAGGCCCGACTTCGGTGGCCACCGAGTACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAGA AAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGA TGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTT TGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGG AAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGT TGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCT TATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAA AATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGA ATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATT GTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCT TAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCT GCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATA CCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAG TTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAA CAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGC AGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGT TTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAAT GATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGC AGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACT TAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCC TCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTT TGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTT GGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGA TGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACT GATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGT ATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAA AACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAA GATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGAC CAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCG TGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACA GGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGC ATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGG AGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTT TAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTT AACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCC GCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAAC AGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTC TTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACC ATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCC AGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGA CATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAA GCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAG GCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGG CCACCCAGTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTT CACCGGGGCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTG GCCACCCTGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTG TTTATCCAAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGG GAGAGGGGCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCT CTGCTCTCAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCG TGTCTCTCGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCT TCCCCCCATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCT GGACTGGCATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAG TAGATGCTGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTG TAAAGAACAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTT CAACCCGTGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCT >In-frame_ENST00000371144_ENST00000566490_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1208AA_start in transcript=280_stop in transcript=3906 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE -------------------------------------------------------------- >In-frame_ENST00000371144_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(transcript)=5311nt_BP=3557nt TTCATGTGACGGGCCCCTCTGCTTCTCCCCCGCCCCATCATCTCCAGCGCGTGGTGGGGGAACTGCTGGGGAAGGCGATTGGCATCGATC TCTCCATCCCTTCCGAGGCCCGACTTCGGTGGCCACCGAGTACTAAATTCACTTGGGAATAAAAGAAAAACATAAGAAAATTATAAGAGA AAGGAATTGTCTTAGAAGAAAGAAGGCAAGCCACCATTTTACCCACGTAAATATATGAATATATTTCTGACATTGAGGTGTTCCAGAAGA TGATAAAGAAATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTACAGGAGTCAGAAACACATTTTTCTTCTGACACAGATTT TGAAGATATCGAAGGAAAAAACCAAAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAAAAAGGGCCCAGCAGAAAAGGGCAAAGGTGG AAATGGAGGAGGAAAACCTCCTTCTGGTCCAAACCGAATGAATGGTCATCACCAACAGAATGGAGTGGAAAACATGATGTTGTTTGAAGT TGTTAAAATGGGCAAGAGTGCTATGCAGTCGGTGGTAGATGATTGGATAGAATCATACAAGCATGACCGAGATATAGCACTTCTTGACCT TATCAACTTTTTTATTCAGTGTTCAGGCTGTAAAGGAGTTGTCACAGCAGAAATGTTTAGACATATGCAGAACTCTGAGATAATTCGAAA AATGACTGAAGAATTCGATGAGGATAGTGGAGATTATCCACTTACCATGGCTGGTCCTCAGTGGAAGAAGTTCAAATCCAGTTTTTGTGA ATTCATTGGCGTGTTAGTACGGCAATGTCAATATAGTATCATATATGATGAGTATATGATGGATACAGTCATTTCACTTCTTACAGGATT GTCTGACTCACAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACAGCTTTGGTGAATGTGGCACTAAATCT TAGCATTAATATGGATAATACACAAAGACAATATGAAGCAGAACGGAATAAAATGATTGGAAAACGAGCCAATGAGAGGCTAGAACTCCT GCTACAAAAGCGGAAAGAGCTTCAGGAAAATCAAGATGAAATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATA CCGTGATGCGATAGCTGAAATTCGAGCTATTTGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTTCTTAATGACAG TTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTAAGACTCAAATGTCTTACTGCTCTACAAGGGCTTTATTATAA CAAAGAGCTTAATTCCAAACTGGAACTTTTTACCAGTCGGTTCAAGGATAGAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGC AGTACAAGCAATAAAATTACTCACTCTTGTTTTACAGAGTAGTGAAGAAGTTCTCACTGCAGAAGATTGTGAAAATGTCTATCATCTGGT TTATTCAGCTCACCGGCCAGTAGCAGTAGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAAT GATGAAAAGAAGAGGAAGACAAGGTCCAAATGCCAACCTTGTTAAGACATTGGTTTTTTTCTTTCTAGAAAGTGAGTTACATGAGCATGC AGCATACCTTGTGGATAGCATGTGGGACTGTGCTACTGAGCTGCTGAAAGACTGGGAATGTATGAATAGCTTGTTACTGGAAGAGCCACT TAGTGGAGAGGAAGCACTAACAGATAGGCAAGAGAGTGCTCTGATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATGTCATCC TCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTTACAGCAAAGGAGAAGAAGACACAGTTGGATGATAGGACAAAAATCACTGAGCTTTT TGCCGTGGCCCTTCCTCAGTTATTAGCAAAATACTCTGTAGATGCAGAAAAGGTGACTAACTTGTTGCAGTTGCCTCAGTACTTTGATTT GGAAATATATACCACTGGACGATTAGAAAAGCATTTGGATGCCTTATTGCGACAGATCCGGAATATTGTAGAGAAGCACACAGATACAGA TGTTTTGGAAGCATGTTCTAAAACTTACCATGCACTCTGTAATGAAGAGTTCACAATCTTCAACAGAGTAGATATTTCAAGAAGTCAACT GATAGATGAATTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGTGAAGAACCTGATGAAGATGATGCATATCAGGT ATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCCCATGACCTTTCAAAGTGGGATTTATTTGCTTGTAATTACAAACTCTTGAA AACTGGAATCGAAAATGGAGACATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTACTCACTATGTAATCCTTTGGCAACTTGCTAA GATAACTGAAAGCAGCTCTACAAAGGAGGACTTGCTGCGTTTAAAGAAACAAATGAGAGTATTTTGTCAGATATGTCAACATTACCTGAC CAACGTGAATACTACTGTTAAGGAACAGGCCTTCACTATTCTGTGTGATATTTTGATGATCTTCAGCCATCAGATTATGTCAGGAGGGCG TGACATGTTAGAGCCATTAGTGTATACCCCTGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACA GGATGATGATAATAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGTAAAATTGAAGCTCTGCACAAGAGAAGAAATTTACTTGCAGC ATTTTGTAAGCTAATTGTATATACTGTGGTGGAGATGAATACAGCTGCAGATATCTTCAAACAGTATATGAAGTATTATAATGACTATGG AGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATAGACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTCTGCAACAGCTTTT TAATGAAATGATACAAGAAAATGGCTATAATTTTGATAGATCATCCTCTACATTTAGTGGCATAAAAGAACTTGCTCGACGTTTTGCTTT AACTTTTGGACTTGATCAGTTGAAAACAAGAGAAGCCATTGCCATGCTACACAAAGATGGCATAGAATTTGCTTTTAAAGAGCCTAATCC GCAAGGGGAGAGCCATCCACCTTTAAATTTGGCATTTCTTGATATTCTGAGTGAATTTTCTTCTAAACTACTTCGACAAGACAAAAGAAC AGTGTATGTTTACTTGGAAAAGTTCATGACCTTTCAGATGTCACTCCGAAGAGAGGATGTGTGGCTTCCACTGATGTCTTACCGAAATTC TTTGCTAGCTGGTGGTGATGATGACACCATGTCAGTCATTAGTGGAATCAGCAGCCGGGGGTCAACAGTACGGAGTAAAAAATCAAAACC ATCTACAGGAAAACGGAAAGTGGTTGAGGGCATGCAGCTTTCACTCAATCAGCTGGACATCATCTCCATGGCGGAGACAACCATGATGCC AGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGGGAGTCTGAGCTCAGGTTCATGATGGATGA CATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAA GCAGAGAGAGGATGAGCTAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAG GGAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAATCTCCAGCCAGCTCCCG GGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGACGGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCA GTGCAACATCATGTAGCCCCCACGTGGGGTGCCCTGGGCCATGGGGACCCCCCCCCACCCTCTTGTCTTTATAGCCCCCATTTCACCGGG GCCCAAGAGCTCTCCAAGGCAGAAGGGGTTGAAGGCAAGCCCGTGACTGTCACCAGAGGCCATGGGCACGGCAGGCGGGCCTGGCCACCC TGTACAGAGTGTAGCAGTAGGGAGTCTCTCACCGTCGCATGGTCCTCCCCAGAGCATGCCGAACCCAGGAGTCTGTCTCACTGTTTATCC AAACACCAGGAAAGGTCCTCCCTCAAAAAAGCATATCTCCACTTCTCTCTAGCTGTATCTAACCCACCGTGTGAATGAACTGGGAGAGGG GCATGCTCCCCAGCTGTGTGTAGTCGTGACTTCTCAACAATCTAGCACCATGTCGGACACGTTCCCCATCCACCCTCCTAGCTCTGCTCT CAGAGCTAGGCACATGGGCACAGGTCCCCTCCCGTCTGTCCTCTCCCAGCAACTGTGCCCTGGAGGGCTCCACATGGCCCCCGTGTCTCT CGGGCACCACCCATATAGCAGTCCCAGAGGGCCCATCTGTAAAGATCGAGCTTGTGTGTGGTGTCGTGGTCACATCTCCCGCTTCCCCCC ATCCTGTGTCTGGGCACAGTTCACATCAGGACAGCGTCCATTGTGCTCTCAGTCTGCCTCAGGTGTGTGCCTGGAGGGGGCCTGGACTGG CATGGATCCAGTGTGCAGAAGAGCCAGCAGGGAACCGGAAGCTCTGATGTCAAGGCCAGAGCAGTTGAGAATGGGACCCAGAGTAGATGC TGACCTGGGCACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGATGCCACTTTGCCAGCCCGACACACGGACCTTTGTAAAGAA CAGCAACAGGCAGGAGAGGCAGCGTGTGACCAGATTGTGTCCCGTCATTGGGTGGCATATGTTAACTAGCTGCCAAACAACTTCAACCCG TGTAATTCATGTACATTTGCAACAGCCAGCCCGGTACAGCCTGTGTGACTTCTCTGTATGTGTGTGTGTGTCGTGACCAGCCTAAGTAGT TAGCATAACTCAAGATGCTGATGTGCAGTCACCCATCAGAGAAAATAAAAATGGAAACCACGTTCACAGCATTTTAAAAGTTTTTACTTT TTTTCTTGATTATGGAAGTAATCCATGTACATAGTAAATCATTTTAAAAGTACAAAAAGTATGAAGAAGTTTGTCTTAAAAAAAAAAAAA >In-frame_ENST00000371144_ENST00000452191_TCGA-69-7979-01A_STAG2_chrX_123220620_+_C16orf45_chr16_15609162_length(amino acids)=1261AA_start in transcript=280_stop in transcript=4065 MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKGGNGGGKPPSGPNRMNGHHQQNGVENMMLFEVVKM GKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIG VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQK RKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKEL NSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKR RGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVG RGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFACNYKLLKTGI ENGDMPEQIVIHALQCTHYVILWQLAKITESSSTKEDLLRLKKQMRVFCQICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDML EPLVYTPDSSLQSELLSFILDHVFIEQDDDNNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDII KETMSKTRQIDKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEFAFKEPNPQGE SHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLAGGDDDTMSVISGISSRGSTVRSKKSKPSTG KRKVVEGMQLSLNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQRE DELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNI -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for STAG2-C16orf45 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for STAG2-C16orf45 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for STAG2-C16orf45 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | STAG2 | C0005684 | Malignant neoplasm of urinary bladder | 3 | CGI;CTD_human |
Hgene | STAG2 | C0005695 | Bladder Neoplasm | 3 | CGI;CTD_human |
Hgene | STAG2 | C4310830 | Xq25 TRIPLICATION SYNDROME | 2 | ORPHANET |
Hgene | STAG2 | C4311049 | Xq25 DUPLICATION SYNDROME | 2 | ORPHANET |
Hgene | STAG2 | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
Hgene | STAG2 | C0018798 | Congenital Heart Defects | 1 | GENOMICS_ENGLAND |
Hgene | STAG2 | C0023466 | Leukemia, Monocytic, Chronic | 1 | CTD_human |
Hgene | STAG2 | C0023470 | Myeloid Leukemia | 1 | CTD_human |
Hgene | STAG2 | C0025958 | Microcephaly | 1 | GENOMICS_ENGLAND |
Hgene | STAG2 | C0456070 | Growth delay | 1 | GENOMICS_ENGLAND |
Hgene | STAG2 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
Hgene | STAG2 | C1384666 | hearing impairment | 1 | GENOMICS_ENGLAND |
Hgene | STAG2 | C1860789 | Leukemia, Megakaryoblastic, of Down Syndrome | 1 | CTD_human |
Hgene | STAG2 | C2713368 | Hematopoetic Myelodysplasia | 1 | CTD_human |
Hgene | STAG2 | C3463824 | MYELODYSPLASTIC SYNDROME | 1 | CTD_human |
Hgene | STAG2 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | STAG2 | C4021817 | Abnormality of head or neck | 1 | GENOMICS_ENGLAND |