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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:TADA3-RRNAD1 (FusionGDB2 ID:88098)

Fusion Gene Summary for TADA3-RRNAD1

check button Fusion gene summary
Fusion gene informationFusion gene name: TADA3-RRNAD1
Fusion gene ID: 88098
HgeneTgene
Gene symbol

TADA3

RRNAD1

Gene ID

10474

51093

Gene nametranscriptional adaptor 3ribosomal RNA adenine dimethylase domain containing 1
SynonymsADA3|NGG1|STAF54|TADA3L|hADA3C1orf66|CGI-41|METTL25B
Cytomap

3p25.3

1q23.1

Type of geneprotein-codingprotein-coding
Descriptiontranscriptional adapter 3ADA3 homologADA3-like proteinalteration/deficiency in activation 3epididymis secretory sperm binding proteinprotein RRNAD1ribosomal RNA adenine dimethylase domain-containing protein 1
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000301964, ENST00000440161, 
ENST00000343450, ENST00000492635, 
ENST00000368218, ENST00000368216, 
ENST00000524343, ENST00000476229, 
ENST00000481920, 
Fusion gene scores* DoF score2 X 2 X 2=85 X 6 X 4=120
# samples 27
** MAII scorelog2(2/8*10)=1.32192809488736log2(7/120*10)=-0.777607578663552
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TADA3 [Title/Abstract] AND RRNAD1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointTADA3(9825711)-RRNAD1(156705516), # samples:1
Anticipated loss of major functional domain due to fusion event.TADA3-RRNAD1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
TADA3-RRNAD1 seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTADA3

GO:0043966

histone H3 acetylation

11564863|18838386

HgeneTADA3

GO:0045893

positive regulation of transcription, DNA-templated

20413580


check buttonFusion gene breakpoints across TADA3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across RRNAD1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-A8-A083TADA3chr3

9825711

-RRNAD1chr1

156705516

+


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Fusion Gene ORF analysis for TADA3-RRNAD1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000301964ENST00000368218TADA3chr3

9825711

-RRNAD1chr1

156705516

+
Frame-shiftENST00000301964ENST00000368216TADA3chr3

9825711

-RRNAD1chr1

156705516

+
5CDS-intronENST00000301964ENST00000524343TADA3chr3

9825711

-RRNAD1chr1

156705516

+
5CDS-intronENST00000301964ENST00000476229TADA3chr3

9825711

-RRNAD1chr1

156705516

+
5CDS-intronENST00000301964ENST00000481920TADA3chr3

9825711

-RRNAD1chr1

156705516

+
In-frameENST00000440161ENST00000368218TADA3chr3

9825711

-RRNAD1chr1

156705516

+
Frame-shiftENST00000440161ENST00000368216TADA3chr3

9825711

-RRNAD1chr1

156705516

+
5CDS-intronENST00000440161ENST00000524343TADA3chr3

9825711

-RRNAD1chr1

156705516

+
5CDS-intronENST00000440161ENST00000476229TADA3chr3

9825711

-RRNAD1chr1

156705516

+
5CDS-intronENST00000440161ENST00000481920TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-3CDSENST00000343450ENST00000368218TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-3CDSENST00000343450ENST00000368216TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-intronENST00000343450ENST00000524343TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-intronENST00000343450ENST00000476229TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-intronENST00000343450ENST00000481920TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-3CDSENST00000492635ENST00000368218TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-3CDSENST00000492635ENST00000368216TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-intronENST00000492635ENST00000524343TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-intronENST00000492635ENST00000476229TADA3chr3

9825711

-RRNAD1chr1

156705516

+
intron-intronENST00000492635ENST00000481920TADA3chr3

9825711

-RRNAD1chr1

156705516

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000301964TADA3chr39825711-ENST00000368218RRNAD1chr1156705516+216816655591971470
ENST00000440161TADA3chr39825711-ENST00000368218RRNAD1chr1156705516+18261323941629511

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000301964ENST00000368218TADA3chr39825711-RRNAD1chr1156705516+0.0120945450.9879055
ENST00000440161ENST00000368218TADA3chr39825711-RRNAD1chr1156705516+0.0103784850.9896215

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Fusion Genomic Features for TADA3-RRNAD1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
TADA3chr39825711-RRNAD1chr1156705516+1.80E-091
TADA3chr39825711-RRNAD1chr1156705516+1.80E-091

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for TADA3-RRNAD1


check button Go to

FGviewer for the breakpoints of chr3:9825711-chr1:156705516

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTADA3chr3:9825711chr1:156705516ENST00000301964-8940_69368.6666666666667433.0Coiled coilOntology_term=ECO:0000255
HgeneTADA3chr3:9825711chr1:156705516ENST00000440161-8940_69368.6666666666667433.0Coiled coilOntology_term=ECO:0000255
TgeneRRNAD1chr3:9825711chr1:156705516ENST0000036821658406_426373.6666666666667476.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTADA3chr3:9825711chr1:156705516ENST00000301964-89367_407368.6666666666667433.0Coiled coilOntology_term=ECO:0000255
HgeneTADA3chr3:9825711chr1:156705516ENST00000343450-18367_4070370.0Coiled coilOntology_term=ECO:0000255
HgeneTADA3chr3:9825711chr1:156705516ENST00000343450-1840_690370.0Coiled coilOntology_term=ECO:0000255
HgeneTADA3chr3:9825711chr1:156705516ENST00000440161-89367_407368.6666666666667433.0Coiled coilOntology_term=ECO:0000255
TgeneRRNAD1chr3:9825711chr1:156705516ENST0000036821658186_210373.6666666666667476.0Coiled coilOntology_term=ECO:0000255


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Fusion Gene Sequence for TADA3-RRNAD1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000301964_ENST00000368218_TCGA-A8-A083_TADA3_chr3_9825711_-_RRNAD1_chr1_156705516_length(transcript)=2168nt_BP=1665nt
CTTCCGGTTCTGTACCCCCATCCTTTCTCTCGCCCCTCCTACCCGCAGCTCCTGGCGCTCGGCGGGGCTAACTGCAGCGCGGAGATCTCG
GCCGCCAAGCTCCGCCTCCCGCCCCGGGCTGTGCCCCGGGGCTCGCCTGAGGCCGACCACCCGCACCCCACCTCTAGCGGCTTTGCTCGA
GGCCCACCTTCTTCCCACCCCCGGCAAACTCCAGTAGGCTCGCCCTCGCTGACTCCCCGCCCCCGCGTCAACTGCAAGGGGCCCGCCCAT
AGCCAGTTCCGGGGCGGTTGCTCACATCGACCGGAACTCCCCGCCCCCTCCCGCGGCCCCTGGGGCCGTAGGAGGCCGCAGCGAGGAGGT
AGAGGGGGCGGGGGTCGCACTAGGGTGTCCCTAGAGAACGAGGACTCTGAAGGCGGGACATTTGGGCGACCCCCGGGCGGGGCCAGCCAT
TAAACAGTCCCACTTCTGTGCCAGACACTGAACTGGGCTCTTGACGGGCATCATCTCTTAATCCTCAGAACATCCCAGGGAGCTCCACAG
GATCCCCATATCCTGGGCCATGAGTGAGTTGAAAGACTGCCCCTTGCAGTTCCACGACTTCAAGTCTGTGGATCACCTGAAGGTCTGTCC
CCGCTACACGGCAGTGCTGGCACGCTCTGAGGATGATGGCATCGGCATCGAGGAGCTGGACACCCTGCAGCTGGAGCTGGAGACCCTGCT
GTCTTCTGCCAGCCGGCGCCTGCGTGTGCTTGAGGCCGAAACCCAGATCCTCACCGACTGGCAGGATAAGAAAGGTGACAGACGATTCCT
GAAGCTGGGTCGAGACCATGAACTTGGAGCTCCCCCCAAACATGGGAAGCCCAAGAAGCAGAAACTGGAAGGGAAGGCAGGACATGGGCC
GGGCCCTGGCCCAGGACGGCCCAAATCCAAAAACCTTCAGCCCAAGATCCAGGAATATGAATTCACTGATGACCCTATCGACGTGCCACG
GATCCCCAAAAATGATGCCCCCAACAGGTTCTGGGCTTCAGTGGAGCCCTACTGTGCTGACATCACCAGCGAGGAGGTCCGCACACTTGA
GGAGTTACTGAAGCCCCCAGAAGATGAGGCTGAGCATTACAAGATCCCACCCCTGGGGAAGCACTACTCCCAGCGCTGGGCCCAGGAGGA
CCTGCTGGAGGAGCAGAAGGATGGGGCCCGGGCAGCGGCTGTGGCTGACAAGAAGAAAGGCCTCATGGGGCCACTGACCGAACTGGACAC
TAAAGATGTGGATGCCCTGCTGAAGAAGTCTGAGGCCCAGCATGAACAGCCGGAAGATGGATGCCCCTTTGGTGCCCTGACGCAGCGCCT
CCTGCAGGCCCTGGTGGAGGAAAATATTATTTCCCCTATGGAGGATTCTCCTATTCCTGACATGTCTGGGAAAGAATCAGGGGCTGACGG
GGCAAGCACCTCCCCTCGCAATCAGAACAAGCCCTTCAGTGTGCCGCATACTAAGTCCCTGGAGAGCCGCATCAAGGAGGAGCTAATTGC
CCAGGGCCTTTTGGAGTCTGAGGACCGCCCCGCAGAGGACTCCGAGGATGAGGTCCTTGCTGAGCTTCGCAAACGGCAGGCTGAGCTGAA
GGCACTTAGTGCCCACAACCGCACCAAGAAGCACGACCTGCTGAGATATGTGCAGCGGGGGCTACAGCGAGTGGGGCTAGATCCCCAGCT
GCCACTGAATCTGGCTGCCCTTCAGGCCCACGTGGCCCAGGAGAACCGTGTGGTGGCCTTCTTCAGCCTGGCTCTACTGCTTGCCCCACT
GGTGGAGACGCTTATTCTACTGGACCGGCTGCTGTACCTTCAGGAACAGGGTTTCCATGCTGAGCTCCTGCCCATCTTCAGTCCTGAACT
CTCTCCCAGAAACCTGGTTCTGGTGGCCACCAAGATGCCCCTGGGTCAGGCTCTTTCTGTTCTGGAGACTGAAGACAGCTGATGCAGCCT
GAGGAAACATCTCAGACCCCATCATCTGAAAGTGCCCAGAGAGCACAGTGGCAGAGTACATCTCATCCAGAGAAACAGCATCCTGCATCC
TCCAGAGTCCTGGTTCCTTCAGTTTCATCCCCTTTCTCTCCTTCCATGGATTATGTAATACATTGTAAAGTTTTAATTAATTAAAAATTG

>In-frame_ENST00000301964_ENST00000368218_TCGA-A8-A083_TADA3_chr3_9825711_-_RRNAD1_chr1_156705516_length(amino acids)=470AA_start in transcript=559_stop in transcript=1971
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRRLRVLEAETQILTDWQDKKGDRRFLKLGRDH
ELGAPPKHGKPKKQKLEGKAGHGPGPGPGRPKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVE
ENIISPMEDSPIPDMSGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
RTKKHDLLRYVQRGLQRVGLDPQLPLNLAALQAHVAQENRVVAFFSLALLLAPLVETLILLDRLLYLQEQGFHAELLPIFSPELSPRNLV

--------------------------------------------------------------
>In-frame_ENST00000440161_ENST00000368218_TCGA-A8-A083_TADA3_chr3_9825711_-_RRNAD1_chr1_156705516_length(transcript)=1826nt_BP=1323nt
ACCATCTATGCTCCGAGCGGGGTAGAGAGCCCTTACGAACGCTTGGGCCTTCCGGAAGTTTTCCACCTAGGGCTGTCTCGGTATTTTTAA
ATTCTTGCACTCGAGTCACTATTTAAGCTCCTCCAGGAATGGGTGCAGCTTCCCTTTGTGCCTTCGGCCTTCTTGTCACCTTTGCCACAG
CCTCCCCCAGCTCCACAGGATCCCCATATCCTGGGCCATGAGTGAGTTGAAAGACTGCCCCTTGCAGTTCCACGACTTCAAGTCTGTGGA
TCACCTGAAGGTCTGTCCCCGCTACACGGCAGTGCTGGCACGCTCTGAGGATGATGGCATCGGCATCGAGGAGCTGGACACCCTGCAGCT
GGAGCTGGAGACCCTGCTGTCTTCTGCCAGCCGGCGCCTGCGTGTGCTTGAGGCCGAAACCCAGATCCTCACCGACTGGCAGGATAAGAA
AGGTGACAGACGATTCCTGAAGCTGGGTCGAGACCATGAACTTGGAGCTCCCCCCAAACATGGGAAGCCCAAGAAGCAGAAACTGGAAGG
GAAGGCAGGACATGGGCCGGGCCCTGGCCCAGGACGGCCCAAATCCAAAAACCTTCAGCCCAAGATCCAGGAATATGAATTCACTGATGA
CCCTATCGACGTGCCACGGATCCCCAAAAATGATGCCCCCAACAGGTTCTGGGCTTCAGTGGAGCCCTACTGTGCTGACATCACCAGCGA
GGAGGTCCGCACACTTGAGGAGTTACTGAAGCCCCCAGAAGATGAGGCTGAGCATTACAAGATCCCACCCCTGGGGAAGCACTACTCCCA
GCGCTGGGCCCAGGAGGACCTGCTGGAGGAGCAGAAGGATGGGGCCCGGGCAGCGGCTGTGGCTGACAAGAAGAAAGGCCTCATGGGGCC
ACTGACCGAACTGGACACTAAAGATGTGGATGCCCTGCTGAAGAAGTCTGAGGCCCAGCATGAACAGCCGGAAGATGGATGCCCCTTTGG
TGCCCTGACGCAGCGCCTCCTGCAGGCCCTGGTGGAGGAAAATATTATTTCCCCTATGGAGGATTCTCCTATTCCTGACATGTCTGGGAA
AGAATCAGGGGCTGACGGGGCAAGCACCTCCCCTCGCAATCAGAACAAGCCCTTCAGTGTGCCGCATACTAAGTCCCTGGAGAGCCGCAT
CAAGGAGGAGCTAATTGCCCAGGGCCTTTTGGAGTCTGAGGACCGCCCCGCAGAGGACTCCGAGGATGAGGTCCTTGCTGAGCTTCGCAA
ACGGCAGGCTGAGCTGAAGGCACTTAGTGCCCACAACCGCACCAAGAAGCACGACCTGCTGAGATATGTGCAGCGGGGGCTACAGCGAGT
GGGGCTAGATCCCCAGCTGCCACTGAATCTGGCTGCCCTTCAGGCCCACGTGGCCCAGGAGAACCGTGTGGTGGCCTTCTTCAGCCTGGC
TCTACTGCTTGCCCCACTGGTGGAGACGCTTATTCTACTGGACCGGCTGCTGTACCTTCAGGAACAGGGTTTCCATGCTGAGCTCCTGCC
CATCTTCAGTCCTGAACTCTCTCCCAGAAACCTGGTTCTGGTGGCCACCAAGATGCCCCTGGGTCAGGCTCTTTCTGTTCTGGAGACTGA
AGACAGCTGATGCAGCCTGAGGAAACATCTCAGACCCCATCATCTGAAAGTGCCCAGAGAGCACAGTGGCAGAGTACATCTCATCCAGAG
AAACAGCATCCTGCATCCTCCAGAGTCCTGGTTCCTTCAGTTTCATCCCCTTTCTCTCCTTCCATGGATTATGTAATACATTGTAAAGTT

>In-frame_ENST00000440161_ENST00000368218_TCGA-A8-A083_TADA3_chr3_9825711_-_RRNAD1_chr1_156705516_length(amino acids)=511AA_start in transcript=94_stop in transcript=1629
MHSSHYLSSSRNGCSFPLCLRPSCHLCHSLPQLHRIPISWAMSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLE
LETLLSSASRRLRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGRPKSKNLQPKIQEYEFTDDP
IDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPL
TELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPRNQNKPFSVPHTKSLESRIK
EELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHNRTKKHDLLRYVQRGLQRVGLDPQLPLNLAALQAHVAQENRVVAFFSLAL

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Fusion Gene PPI Analysis for TADA3-RRNAD1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for TADA3-RRNAD1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for TADA3-RRNAD1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource