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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:TAF1C-TSTA3 (FusionGDB2 ID:88140) |
Fusion Gene Summary for TAF1C-TSTA3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: TAF1C-TSTA3 | Fusion gene ID: 88140 | Hgene | Tgene | Gene symbol | TAF1C | TSTA3 | Gene ID | 9013 | 7264 |
Gene name | TATA-box binding protein associated factor, RNA polymerase I subunit C | tissue specific transplantation antigen P35B | |
Synonyms | MGC:39976|SL1|TAFI110|TAFI95 | FX|P35B|SDR4E1 | |
Cytomap | 16q24.1 | 8q24.3 | |
Type of gene | protein-coding | protein-coding | |
Description | TATA box-binding protein-associated factor RNA polymerase I subunit CRNA polymerase I-specific TBP-associated factor 110 kDaSL1, 110kD subunitTATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDTATA box binding protein (TBP)-as | GDP-L-fucose synthase3-5 epimerase/4-reductaseGDP-4-keto-6-deoxy-D-mannose epimerase-reductaseGDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductasered cell NADP(H)-binding proteinshort chain dehydrogenase/reductase family 4E, member 1testis tissue | |
Modification date | 20200320 | 20200327 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000341690, ENST00000567759, ENST00000378541, ENST00000541676, ENST00000566732, ENST00000570117, ENST00000565544, | ENST00000529064, ENST00000425753, | |
Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 5 X 3 X 3=45 |
# samples | 2 | 7 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(7/45*10)=0.637429920615292 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TAF1C [Title/Abstract] AND TSTA3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | TAF1C(84215807)-TSTA3(144695465), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | TAF1C-TSTA3 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. TAF1C-TSTA3 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | TSTA3 | GO:0019673 | GDP-mannose metabolic process | 9525924 |
Tgene | TSTA3 | GO:0042351 | 'de novo' GDP-L-fucose biosynthetic process | 9525924 |
Fusion gene breakpoints across TAF1C (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TSTA3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-13-0913 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
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Fusion Gene ORF analysis for TAF1C-TSTA3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000341690 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000341690 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000567759 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000567759 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
Frame-shift | ENST00000378541 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
Frame-shift | ENST00000378541 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000541676 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000541676 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000566732 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
In-frame | ENST00000566732 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
5UTR-3CDS | ENST00000570117 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
5UTR-3CDS | ENST00000570117 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
intron-3CDS | ENST00000565544 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
intron-3CDS | ENST00000565544 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000341690 | TAF1C | chr16 | 84215807 | - | ENST00000529064 | TSTA3 | chr8 | 144695465 | - | 1229 | 781 | 833 | 192 | 213 |
ENST00000341690 | TAF1C | chr16 | 84215807 | - | ENST00000425753 | TSTA3 | chr8 | 144695465 | - | 1229 | 781 | 833 | 192 | 213 |
ENST00000567759 | TAF1C | chr16 | 84215807 | - | ENST00000529064 | TSTA3 | chr8 | 144695465 | - | 1352 | 904 | 165 | 908 | 247 |
ENST00000567759 | TAF1C | chr16 | 84215807 | - | ENST00000425753 | TSTA3 | chr8 | 144695465 | - | 1352 | 904 | 165 | 908 | 247 |
ENST00000541676 | TAF1C | chr16 | 84215807 | - | ENST00000529064 | TSTA3 | chr8 | 144695465 | - | 1236 | 788 | 840 | 199 | 213 |
ENST00000541676 | TAF1C | chr16 | 84215807 | - | ENST00000425753 | TSTA3 | chr8 | 144695465 | - | 1236 | 788 | 840 | 199 | 213 |
ENST00000566732 | TAF1C | chr16 | 84215807 | - | ENST00000529064 | TSTA3 | chr8 | 144695465 | - | 1380 | 932 | 193 | 936 | 247 |
ENST00000566732 | TAF1C | chr16 | 84215807 | - | ENST00000425753 | TSTA3 | chr8 | 144695465 | - | 1380 | 932 | 193 | 936 | 247 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000341690 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.12243798 | 0.877562 |
ENST00000341690 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.12243798 | 0.877562 |
ENST00000567759 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.1313832 | 0.8686168 |
ENST00000567759 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.1313832 | 0.8686168 |
ENST00000541676 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.11509563 | 0.8849044 |
ENST00000541676 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.11509563 | 0.8849044 |
ENST00000566732 | ENST00000529064 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.14178954 | 0.85821044 |
ENST00000566732 | ENST00000425753 | TAF1C | chr16 | 84215807 | - | TSTA3 | chr8 | 144695465 | - | 0.14178954 | 0.85821044 |
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Fusion Genomic Features for TAF1C-TSTA3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for TAF1C-TSTA3 |
Go to FGviewer for the breakpoints of chr16:84215807-chr8:144695465 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | TSTA3 | chr16:84215807 | chr8:144695465 | ENST00000425753 | 8 | 11 | 14_20 | 270.0 | 322.0 | Nucleotide binding | NADP | |
Tgene | TSTA3 | chr16:84215807 | chr8:144695465 | ENST00000425753 | 8 | 11 | 170_173 | 270.0 | 322.0 | Nucleotide binding | NADP | |
Tgene | TSTA3 | chr16:84215807 | chr8:144695465 | ENST00000529064 | 8 | 11 | 14_20 | 270.0 | 322.0 | Nucleotide binding | NADP | |
Tgene | TSTA3 | chr16:84215807 | chr8:144695465 | ENST00000529064 | 8 | 11 | 170_173 | 270.0 | 322.0 | Nucleotide binding | NADP |
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Fusion Gene Sequence for TAF1C-TSTA3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000341690_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1229nt_BP=781nt CCGGAAGACCGTGGGTAGCTGCGGCGGGGCTGACCCGTCCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGTGCCAGGG TCCGGCGAGCATCACGCCGAGGCCCATTTTCCAGACGACCACGACGAGGCCGGGGTCACCTGGCGAGACGCACTGACTCTGCCAGAGGCC CAGCCCCAGAACTCAGAGAATGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCATGCTGCCT CCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATCGGAAGCGGCCCCGAGTCGTG CTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGTAGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGAGAATTTC AAGCTGGAGGGAGCGGGGAGCCGCACTAAGAAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCAGCCCTGG GGGTGTCCCTGGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGCGAGCCACTTG GCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAGGCCTGCACTGGGGGCGCGCTGGCCTGGGTTCCT GGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTGGAGGCGCCCAGGACAGGCTGCTTTGATACAACCAAGTCGGATGGGCAGTT TAAGAAGACAGCCAGTAACAGCAAGCTGAGGACCTACCTGCCCGACTTCCGGTTCACACCCTTCAAGCAGGCGGTGAAGGAGACCTGTGC TTGGTTCACTGACAACTACGAGCAGGCCCGGAAGTGAAGCTGGAAGACAGGATCAGGTGCCAGCGGACCATCGGCTGGCAGAGCCCAGCG GCCACCACCCGTCAACCCTGCCAGGAGCTGAGGGCACCACCCAGCAACCTGGGCCTGCATTCCATCCGCTCTGCAGCCCCAAGCATCTTT CCAGTGGGGCCCCCATTCACGTTGGTCCTCAGGGAAACCAGGGTCCCGGGCAGGCCCGGCGCTTTGCTCCCCACACCAGCCCCCTGCGCG >In-frame_ENST00000341690_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=213AA_start in transcript=833_stop in transcript=192 MLLLAVFLNCPSDLVVSKQPVLGASSRVDQLPELGCPSRNPGQRAPSAGLIQKQLLPPQHQLLVQQLCQVARHRRAQDGAPEDREAALSV AEVSPGTPPGLVSTEVLEQLLHTDHCLLLSAAPRSLQLEILQHQLPQGRKGYVSMIQEEPADLLSHIQHDSGPLPIPAPSAEKQVPGSQA -------------------------------------------------------------- >In-frame_ENST00000341690_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1229nt_BP=781nt CCGGAAGACCGTGGGTAGCTGCGGCGGGGCTGACCCGTCCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGTGCCAGGG TCCGGCGAGCATCACGCCGAGGCCCATTTTCCAGACGACCACGACGAGGCCGGGGTCACCTGGCGAGACGCACTGACTCTGCCAGAGGCC CAGCCCCAGAACTCAGAGAATGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCATGCTGCCT CCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATCGGAAGCGGCCCCGAGTCGTG CTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGTAGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGAGAATTTC AAGCTGGAGGGAGCGGGGAGCCGCACTAAGAAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCAGCCCTGG GGGTGTCCCTGGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGCGAGCCACTTG GCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAGGCCTGCACTGGGGGCGCGCTGGCCTGGGTTCCT GGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTGGAGGCGCCCAGGACAGGCTGCTTTGATACAACCAAGTCGGATGGGCAGTT TAAGAAGACAGCCAGTAACAGCAAGCTGAGGACCTACCTGCCCGACTTCCGGTTCACACCCTTCAAGCAGGCGGTGAAGGAGACCTGTGC TTGGTTCACTGACAACTACGAGCAGGCCCGGAAGTGAAGCTGGAAGACAGGATCAGGTGCCAGCGGACCATCGGCTGGCAGAGCCCAGCG GCCACCACCCGTCAACCCTGCCAGGAGCTGAGGGCACCACCCAGCAACCTGGGCCTGCATTCCATCCGCTCTGCAGCCCCAAGCATCTTT CCAGTGGGGCCCCCATTCACGTTGGTCCTCAGGGAAACCAGGGTCCCGGGCAGGCCCGGCGCTTTGCTCCCCACACCAGCCCCCTGCGCG >In-frame_ENST00000341690_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=213AA_start in transcript=833_stop in transcript=192 MLLLAVFLNCPSDLVVSKQPVLGASSRVDQLPELGCPSRNPGQRAPSAGLIQKQLLPPQHQLLVQQLCQVARHRRAQDGAPEDREAALSV AEVSPGTPPGLVSTEVLEQLLHTDHCLLLSAAPRSLQLEILQHQLPQGRKGYVSMIQEEPADLLSHIQHDSGPLPIPAPSAEKQVPGSQA -------------------------------------------------------------- >In-frame_ENST00000567759_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1352nt_BP=904nt CCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGTGCCAGGGTCCGGCGAGCATCACGCCGAGGCCCATTTTCCAGACGA CCACGACGAGGCCGGGGTCACGAACTCTGGCGCCCCTTACCAGCTTCCAGTCTCTCGAGGTGGCCAGTGTGGTGCTTGGTCCTTGTTTCC AGGATGGACTTCCCCAGCTCCCTCCGCCCTGCATTGTTTCTGACCGGCCCCCTTGGTCTGAGCGACGTCCCTGACCTCTCTTTCATGTGC AGCTGGCGAGACGCACTGACTCTGCCAGAGGCCCAGCCCCAGAACTCAGAGAATGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAG CCGGCAACCCCTGGGCCTCTCCCCATGCTGCCTCCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGA GGGTGCCGGTATCGGAAGCGGCCCCGAGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGTAGCCTTT GCGCCCCTGGGGAAGCTGATGCTGGAGAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAAGAAGAAGACAGTGGTCAGTGTGAAGAAG CTGCTCCAGGACCTCGGTGGACACCAGCCCTGGGGGTGTCCCTGGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGC CCCATCCTGGGCACGTCGGTGGCGAGCCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAG GCCTGCACTGGGGGCGCGCTGGCCTGGGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTGGAGGCGCCCAGGACAGG CTGCTTTGATACAACCAAGTCGGATGGGCAGTTTAAGAAGACAGCCAGTAACAGCAAGCTGAGGACCTACCTGCCCGACTTCCGGTTCAC ACCCTTCAAGCAGGCGGTGAAGGAGACCTGTGCTTGGTTCACTGACAACTACGAGCAGGCCCGGAAGTGAAGCTGGAAGACAGGATCAGG TGCCAGCGGACCATCGGCTGGCAGAGCCCAGCGGCCACCACCCGTCAACCCTGCCAGGAGCTGAGGGCACCACCCAGCAACCTGGGCCTG CATTCCATCCGCTCTGCAGCCCCAAGCATCTTTCCAGTGGGGCCCCCATTCACGTTGGTCCTCAGGGAAACCAGGGTCCCGGGCAGGCCC GGCGCTTTGCTCCCCACACCAGCCCCCTGCGCGTGTCCACTCTGATCCTGCATCCCACTCCCTGGGAGCCAATAAAGTGCATTTTCACAG >In-frame_ENST00000567759_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=247AA_start in transcript=165_stop in transcript=908 MVLVSRMDFPSSLRPALFLTGPLGLSDVPDLSFMCSWRDALTLPEAQPQNSENGALHVTKDLLWEPATPGPLPMLPPLIDPWDPGLTARD LLFRGGCRYRKRPRVVLDVTEQISRFLLDHGDVAFAPLGKLMLENFKLEGAGSRTKKKTVVSVKKLLQDLGGHQPWGCPWAYLSNRQRRF -------------------------------------------------------------- >In-frame_ENST00000567759_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1352nt_BP=904nt CCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGTGCCAGGGTCCGGCGAGCATCACGCCGAGGCCCATTTTCCAGACGA CCACGACGAGGCCGGGGTCACGAACTCTGGCGCCCCTTACCAGCTTCCAGTCTCTCGAGGTGGCCAGTGTGGTGCTTGGTCCTTGTTTCC AGGATGGACTTCCCCAGCTCCCTCCGCCCTGCATTGTTTCTGACCGGCCCCCTTGGTCTGAGCGACGTCCCTGACCTCTCTTTCATGTGC AGCTGGCGAGACGCACTGACTCTGCCAGAGGCCCAGCCCCAGAACTCAGAGAATGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAG CCGGCAACCCCTGGGCCTCTCCCCATGCTGCCTCCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGA GGGTGCCGGTATCGGAAGCGGCCCCGAGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGTAGCCTTT GCGCCCCTGGGGAAGCTGATGCTGGAGAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAAGAAGAAGACAGTGGTCAGTGTGAAGAAG CTGCTCCAGGACCTCGGTGGACACCAGCCCTGGGGGTGTCCCTGGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGC CCCATCCTGGGCACGTCGGTGGCGAGCCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAG GCCTGCACTGGGGGCGCGCTGGCCTGGGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTGGAGGCGCCCAGGACAGG CTGCTTTGATACAACCAAGTCGGATGGGCAGTTTAAGAAGACAGCCAGTAACAGCAAGCTGAGGACCTACCTGCCCGACTTCCGGTTCAC ACCCTTCAAGCAGGCGGTGAAGGAGACCTGTGCTTGGTTCACTGACAACTACGAGCAGGCCCGGAAGTGAAGCTGGAAGACAGGATCAGG TGCCAGCGGACCATCGGCTGGCAGAGCCCAGCGGCCACCACCCGTCAACCCTGCCAGGAGCTGAGGGCACCACCCAGCAACCTGGGCCTG CATTCCATCCGCTCTGCAGCCCCAAGCATCTTTCCAGTGGGGCCCCCATTCACGTTGGTCCTCAGGGAAACCAGGGTCCCGGGCAGGCCC GGCGCTTTGCTCCCCACACCAGCCCCCTGCGCGTGTCCACTCTGATCCTGCATCCCACTCCCTGGGAGCCAATAAAGTGCATTTTCACAG >In-frame_ENST00000567759_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=247AA_start in transcript=165_stop in transcript=908 MVLVSRMDFPSSLRPALFLTGPLGLSDVPDLSFMCSWRDALTLPEAQPQNSENGALHVTKDLLWEPATPGPLPMLPPLIDPWDPGLTARD LLFRGGCRYRKRPRVVLDVTEQISRFLLDHGDVAFAPLGKLMLENFKLEGAGSRTKKKTVVSVKKLLQDLGGHQPWGCPWAYLSNRQRRF -------------------------------------------------------------- >In-frame_ENST00000541676_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1236nt_BP=788nt GTCCAAACCGGAAGACCGTGGGTAGCTGCGGCGGGGCTGACCCGTCCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGT GCCAGGGTCCGGCGAGCATCACGCCGAGGCCCATTTTCCAGACGACCACGACGAGGCCGGGGTCACCTGGCGAGACGCACTGACTCTGCC AGAGGCCCAGCCCCAGAACTCAGAGAATGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCAT GCTGCCTCCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATCGGAAGCGGCCCCG AGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGTAGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGA GAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAAGAAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCA GCCCTGGGGGTGTCCCTGGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGCGAG CCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAGGCCTGCACTGGGGGCGCGCTGGCCTG GGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTGGAGGCGCCCAGGACAGGCTGCTTTGATACAACCAAGTCGGATG GGCAGTTTAAGAAGACAGCCAGTAACAGCAAGCTGAGGACCTACCTGCCCGACTTCCGGTTCACACCCTTCAAGCAGGCGGTGAAGGAGA CCTGTGCTTGGTTCACTGACAACTACGAGCAGGCCCGGAAGTGAAGCTGGAAGACAGGATCAGGTGCCAGCGGACCATCGGCTGGCAGAG CCCAGCGGCCACCACCCGTCAACCCTGCCAGGAGCTGAGGGCACCACCCAGCAACCTGGGCCTGCATTCCATCCGCTCTGCAGCCCCAAG CATCTTTCCAGTGGGGCCCCCATTCACGTTGGTCCTCAGGGAAACCAGGGTCCCGGGCAGGCCCGGCGCTTTGCTCCCCACACCAGCCCC >In-frame_ENST00000541676_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=213AA_start in transcript=840_stop in transcript=199 MLLLAVFLNCPSDLVVSKQPVLGASSRVDQLPELGCPSRNPGQRAPSAGLIQKQLLPPQHQLLVQQLCQVARHRRAQDGAPEDREAALSV AEVSPGTPPGLVSTEVLEQLLHTDHCLLLSAAPRSLQLEILQHQLPQGRKGYVSMIQEEPADLLSHIQHDSGPLPIPAPSAEKQVPGSQA -------------------------------------------------------------- >In-frame_ENST00000541676_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1236nt_BP=788nt GTCCAAACCGGAAGACCGTGGGTAGCTGCGGCGGGGCTGACCCGTCCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGT GCCAGGGTCCGGCGAGCATCACGCCGAGGCCCATTTTCCAGACGACCACGACGAGGCCGGGGTCACCTGGCGAGACGCACTGACTCTGCC AGAGGCCCAGCCCCAGAACTCAGAGAATGGGGCACTGCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCAT GCTGCCTCCCCTCATCGATCCCTGGGACCCTGGCCTGACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATCGGAAGCGGCCCCG AGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTTCCTCTTGGATCATGGAGACGTAGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGA GAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAAGAAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCA GCCCTGGGGGTGTCCCTGGGCTTACCTCAGCAACCGACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGCGAG CCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCTGCGGTGGGAGCAGCTGCTTCTGGATGAGGCCTGCACTGGGGGCGCGCTGGCCTG GGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGTCTACCCTGCTGGAGGCGCCCAGGACAGGCTGCTTTGATACAACCAAGTCGGATG GGCAGTTTAAGAAGACAGCCAGTAACAGCAAGCTGAGGACCTACCTGCCCGACTTCCGGTTCACACCCTTCAAGCAGGCGGTGAAGGAGA CCTGTGCTTGGTTCACTGACAACTACGAGCAGGCCCGGAAGTGAAGCTGGAAGACAGGATCAGGTGCCAGCGGACCATCGGCTGGCAGAG CCCAGCGGCCACCACCCGTCAACCCTGCCAGGAGCTGAGGGCACCACCCAGCAACCTGGGCCTGCATTCCATCCGCTCTGCAGCCCCAAG CATCTTTCCAGTGGGGCCCCCATTCACGTTGGTCCTCAGGGAAACCAGGGTCCCGGGCAGGCCCGGCGCTTTGCTCCCCACACCAGCCCC >In-frame_ENST00000541676_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=213AA_start in transcript=840_stop in transcript=199 MLLLAVFLNCPSDLVVSKQPVLGASSRVDQLPELGCPSRNPGQRAPSAGLIQKQLLPPQHQLLVQQLCQVARHRRAQDGAPEDREAALSV AEVSPGTPPGLVSTEVLEQLLHTDHCLLLSAAPRSLQLEILQHQLPQGRKGYVSMIQEEPADLLSHIQHDSGPLPIPAPSAEKQVPGSQA -------------------------------------------------------------- >In-frame_ENST00000566732_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1380nt_BP=932nt GTGGGTAGCTGCGGCGGGGCTGACCCGTCCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGTGCCAGGGTCCGGCGAGC ATCACGCCGAGGCCCATTTTCCAGACGACCACGACGAGGCCGGGGTCACGAACTCTGGCGCCCCTTACCAGCTTCCAGTCTCTCGAGGTG GCCAGTGTGGTGCTTGGTCCTTGTTTCCAGGATGGACTTCCCCAGCTCCCTCCGCCCTGCATTGTTTCTGACCGGCCCCCTTGGTCTGAG CGACGTCCCTGACCTCTCTTTCATGTGCAGCTGGCGAGACGCACTGACTCTGCCAGAGGCCCAGCCCCAGAACTCAGAGAATGGGGCACT GCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCATGCTGCCTCCCCTCATCGATCCCTGGGACCCTGGCCT GACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATCGGAAGCGGCCCCGAGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTT CCTCTTGGATCATGGAGACGTAGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGAGAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAA GAAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCAGCCCTGGGGGTGTCCCTGGGCTTACCTCAGCAACCG ACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGCGAGCCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCT GCGGTGGGAGCAGCTGCTTCTGGATGAGGCCTGCACTGGGGGCGCGCTGGCCTGGGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGT CTACCCTGCTGGAGGCGCCCAGGACAGGCTGCTTTGATACAACCAAGTCGGATGGGCAGTTTAAGAAGACAGCCAGTAACAGCAAGCTGA GGACCTACCTGCCCGACTTCCGGTTCACACCCTTCAAGCAGGCGGTGAAGGAGACCTGTGCTTGGTTCACTGACAACTACGAGCAGGCCC GGAAGTGAAGCTGGAAGACAGGATCAGGTGCCAGCGGACCATCGGCTGGCAGAGCCCAGCGGCCACCACCCGTCAACCCTGCCAGGAGCT GAGGGCACCACCCAGCAACCTGGGCCTGCATTCCATCCGCTCTGCAGCCCCAAGCATCTTTCCAGTGGGGCCCCCATTCACGTTGGTCCT CAGGGAAACCAGGGTCCCGGGCAGGCCCGGCGCTTTGCTCCCCACACCAGCCCCCTGCGCGTGTCCACTCTGATCCTGCATCCCACTCCC >In-frame_ENST00000566732_ENST00000529064_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=247AA_start in transcript=193_stop in transcript=936 MVLVSRMDFPSSLRPALFLTGPLGLSDVPDLSFMCSWRDALTLPEAQPQNSENGALHVTKDLLWEPATPGPLPMLPPLIDPWDPGLTARD LLFRGGCRYRKRPRVVLDVTEQISRFLLDHGDVAFAPLGKLMLENFKLEGAGSRTKKKTVVSVKKLLQDLGGHQPWGCPWAYLSNRQRRF -------------------------------------------------------------- >In-frame_ENST00000566732_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(transcript)=1380nt_BP=932nt GTGGGTAGCTGCGGCGGGGCTGACCCGTCCCGAGTGCCAAAGCTGGGGTTCTACTTGAGATTTCCCTCGTGGTGCCAGGGTCCGGCGAGC ATCACGCCGAGGCCCATTTTCCAGACGACCACGACGAGGCCGGGGTCACGAACTCTGGCGCCCCTTACCAGCTTCCAGTCTCTCGAGGTG GCCAGTGTGGTGCTTGGTCCTTGTTTCCAGGATGGACTTCCCCAGCTCCCTCCGCCCTGCATTGTTTCTGACCGGCCCCCTTGGTCTGAG CGACGTCCCTGACCTCTCTTTCATGTGCAGCTGGCGAGACGCACTGACTCTGCCAGAGGCCCAGCCCCAGAACTCAGAGAATGGGGCACT GCATGTGACCAAGGACCTGCTGTGGGAGCCGGCAACCCCTGGGCCTCTCCCCATGCTGCCTCCCCTCATCGATCCCTGGGACCCTGGCCT GACTGCCCGGGACCTGCTTTTCCGCGGAGGGTGCCGGTATCGGAAGCGGCCCCGAGTCGTGCTGGATGTGACTGAGCAGATCAGCCGGTT CCTCTTGGATCATGGAGACGTAGCCTTTGCGCCCCTGGGGAAGCTGATGCTGGAGAATTTCAAGCTGGAGGGAGCGGGGAGCCGCACTAA GAAGAAGACAGTGGTCAGTGTGAAGAAGCTGCTCCAGGACCTCGGTGGACACCAGCCCTGGGGGTGTCCCTGGGCTTACCTCAGCAACCG ACAGCGCCGCTTCTCTATCCTCGGGGGCCCCATCCTGGGCACGTCGGTGGCGAGCCACTTGGCAGAGCTGCTGCACGAGGAGCTGGTGCT GCGGTGGGAGCAGCTGCTTCTGGATGAGGCCTGCACTGGGGGCGCGCTGGCCTGGGTTCCTGGAAGGACACCCCAGTTCGGGCAGCTGGT CTACCCTGCTGGAGGCGCCCAGGACAGGCTGCTTTGATACAACCAAGTCGGATGGGCAGTTTAAGAAGACAGCCAGTAACAGCAAGCTGA GGACCTACCTGCCCGACTTCCGGTTCACACCCTTCAAGCAGGCGGTGAAGGAGACCTGTGCTTGGTTCACTGACAACTACGAGCAGGCCC GGAAGTGAAGCTGGAAGACAGGATCAGGTGCCAGCGGACCATCGGCTGGCAGAGCCCAGCGGCCACCACCCGTCAACCCTGCCAGGAGCT GAGGGCACCACCCAGCAACCTGGGCCTGCATTCCATCCGCTCTGCAGCCCCAAGCATCTTTCCAGTGGGGCCCCCATTCACGTTGGTCCT CAGGGAAACCAGGGTCCCGGGCAGGCCCGGCGCTTTGCTCCCCACACCAGCCCCCTGCGCGTGTCCACTCTGATCCTGCATCCCACTCCC >In-frame_ENST00000566732_ENST00000425753_TCGA-13-0913_TAF1C_chr16_84215807_-_TSTA3_chr8_144695465_length(amino acids)=247AA_start in transcript=193_stop in transcript=936 MVLVSRMDFPSSLRPALFLTGPLGLSDVPDLSFMCSWRDALTLPEAQPQNSENGALHVTKDLLWEPATPGPLPMLPPLIDPWDPGLTARD LLFRGGCRYRKRPRVVLDVTEQISRFLLDHGDVAFAPLGKLMLENFKLEGAGSRTKKKTVVSVKKLLQDLGGHQPWGCPWAYLSNRQRRF -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for TAF1C-TSTA3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for TAF1C-TSTA3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for TAF1C-TSTA3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TAF1C | C0004352 | Autistic Disorder | 1 | CTD_human |