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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:TCF12-NPAS1 (FusionGDB2 ID:89094) |
Fusion Gene Summary for TCF12-NPAS1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: TCF12-NPAS1 | Fusion gene ID: 89094 | Hgene | Tgene | Gene symbol | TCF12 | NPAS1 | Gene ID | 6938 | 4861 |
Gene name | transcription factor 12 | neuronal PAS domain protein 1 | |
Synonyms | CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 | MOP5|PASD5|bHLHe11 | |
Cytomap | 15q21.3 | 19q13.32 | |
Type of gene | protein-coding | protein-coding | |
Description | transcription factor 12DNA-binding protein HTF4E-box-binding proteinclass B basic helix-loop-helix protein 20helix-loop-helix transcription factor 4transcription factor HTF-4 | neuronal PAS domain-containing protein 1PAS domain-containing protein 5basic-helix-loop-helix-PAS protein MOP5class E basic helix-loop-helix protein 11member of PAS protein 5member of PAS superfamily 5neuronal PAS1 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q99742 | |
Ensembl transtripts involved in fusion gene | ENST00000438423, ENST00000267811, ENST00000452095, ENST00000333725, ENST00000557843, ENST00000560764, ENST00000543579, ENST00000537840, ENST00000343827, ENST00000559710, ENST00000559703, | ENST00000602212, ENST00000602189, ENST00000449844, ENST00000439365, | |
Fusion gene scores | * DoF score | 29 X 19 X 12=6612 | 9 X 4 X 5=180 |
# samples | 32 | 12 | |
** MAII score | log2(32/6612*10)=-4.36894291440495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(12/180*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TCF12 [Title/Abstract] AND NPAS1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | TCF12(57213296)-NPAS1(47542294), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TCF12 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 11802795 |
Fusion gene breakpoints across TCF12 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across NPAS1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-EJ-A8FO-01A | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
ChimerDB4 | PRAD | TCGA-EJ-A8FO-01A | TCF12 | chr15 | 57213296 | - | NPAS1 | chr19 | 47542294 | + |
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Fusion Gene ORF analysis for TCF12-NPAS1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000438423 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000438423 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000438423 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000438423 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000267811 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000267811 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000267811 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000267811 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000452095 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000452095 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000452095 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000452095 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000333725 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000333725 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000333725 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000333725 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000557843 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000557843 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000557843 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
In-frame | ENST00000557843 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000560764 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000560764 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000560764 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000560764 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000543579 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000543579 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000543579 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000543579 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000537840 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000537840 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000537840 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000537840 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000343827 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000343827 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000343827 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000343827 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559710 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559710 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559710 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559710 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559703 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559703 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559703 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
intron-3CDS | ENST00000559703 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000438423 | TCF12 | chr15 | 57213296 | + | ENST00000602212 | NPAS1 | chr19 | 47542294 | + | 1653 | 444 | 260 | 1528 | 422 |
ENST00000438423 | TCF12 | chr15 | 57213296 | + | ENST00000602189 | NPAS1 | chr19 | 47542294 | + | 1608 | 444 | 260 | 1531 | 423 |
ENST00000438423 | TCF12 | chr15 | 57213296 | + | ENST00000449844 | NPAS1 | chr19 | 47542294 | + | 1637 | 444 | 260 | 1528 | 422 |
ENST00000438423 | TCF12 | chr15 | 57213296 | + | ENST00000439365 | NPAS1 | chr19 | 47542294 | + | 1589 | 444 | 1532 | 720 | 270 |
ENST00000267811 | TCF12 | chr15 | 57213296 | + | ENST00000602212 | NPAS1 | chr19 | 47542294 | + | 1661 | 452 | 304 | 1536 | 410 |
ENST00000267811 | TCF12 | chr15 | 57213296 | + | ENST00000602189 | NPAS1 | chr19 | 47542294 | + | 1616 | 452 | 304 | 1539 | 411 |
ENST00000267811 | TCF12 | chr15 | 57213296 | + | ENST00000449844 | NPAS1 | chr19 | 47542294 | + | 1645 | 452 | 304 | 1536 | 410 |
ENST00000267811 | TCF12 | chr15 | 57213296 | + | ENST00000439365 | NPAS1 | chr19 | 47542294 | + | 1597 | 452 | 1540 | 728 | 270 |
ENST00000452095 | TCF12 | chr15 | 57213296 | + | ENST00000602212 | NPAS1 | chr19 | 47542294 | + | 1651 | 442 | 294 | 1526 | 410 |
ENST00000452095 | TCF12 | chr15 | 57213296 | + | ENST00000602189 | NPAS1 | chr19 | 47542294 | + | 1606 | 442 | 294 | 1529 | 411 |
ENST00000452095 | TCF12 | chr15 | 57213296 | + | ENST00000449844 | NPAS1 | chr19 | 47542294 | + | 1635 | 442 | 294 | 1526 | 410 |
ENST00000452095 | TCF12 | chr15 | 57213296 | + | ENST00000439365 | NPAS1 | chr19 | 47542294 | + | 1587 | 442 | 1530 | 718 | 270 |
ENST00000333725 | TCF12 | chr15 | 57213296 | + | ENST00000602212 | NPAS1 | chr19 | 47542294 | + | 1592 | 383 | 235 | 1467 | 410 |
ENST00000333725 | TCF12 | chr15 | 57213296 | + | ENST00000602189 | NPAS1 | chr19 | 47542294 | + | 1547 | 383 | 235 | 1470 | 411 |
ENST00000333725 | TCF12 | chr15 | 57213296 | + | ENST00000449844 | NPAS1 | chr19 | 47542294 | + | 1576 | 383 | 235 | 1467 | 410 |
ENST00000333725 | TCF12 | chr15 | 57213296 | + | ENST00000439365 | NPAS1 | chr19 | 47542294 | + | 1528 | 383 | 641 | 1420 | 259 |
ENST00000557843 | TCF12 | chr15 | 57213296 | + | ENST00000602212 | NPAS1 | chr19 | 47542294 | + | 1444 | 235 | 51 | 1319 | 422 |
ENST00000557843 | TCF12 | chr15 | 57213296 | + | ENST00000602189 | NPAS1 | chr19 | 47542294 | + | 1399 | 235 | 51 | 1322 | 423 |
ENST00000557843 | TCF12 | chr15 | 57213296 | + | ENST00000449844 | NPAS1 | chr19 | 47542294 | + | 1428 | 235 | 51 | 1319 | 422 |
ENST00000557843 | TCF12 | chr15 | 57213296 | + | ENST00000439365 | NPAS1 | chr19 | 47542294 | + | 1380 | 235 | 493 | 1272 | 259 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000438423 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.16974783 | 0.8302522 |
ENST00000438423 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.15979207 | 0.840208 |
ENST00000438423 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.1739959 | 0.826004 |
ENST00000438423 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.6249375 | 0.37506256 |
ENST00000267811 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.17093962 | 0.8290604 |
ENST00000267811 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.16148555 | 0.8385144 |
ENST00000267811 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.17520836 | 0.82479167 |
ENST00000267811 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.6192917 | 0.38070828 |
ENST00000452095 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.17577247 | 0.8242276 |
ENST00000452095 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.16628559 | 0.8337144 |
ENST00000452095 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.1801364 | 0.81986356 |
ENST00000452095 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.6593644 | 0.3406356 |
ENST00000333725 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.17310353 | 0.8268964 |
ENST00000333725 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.16272949 | 0.8372705 |
ENST00000333725 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.1770716 | 0.8229284 |
ENST00000333725 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.5980655 | 0.40193453 |
ENST00000557843 | ENST00000602212 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.13831165 | 0.8616884 |
ENST00000557843 | ENST00000602189 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.13322768 | 0.86677235 |
ENST00000557843 | ENST00000449844 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.1429838 | 0.85701615 |
ENST00000557843 | ENST00000439365 | TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542294 | + | 0.49977896 | 0.5002211 |
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Fusion Genomic Features for TCF12-NPAS1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542293 | + | 1.34E-07 | 0.9999999 |
TCF12 | chr15 | 57213296 | + | NPAS1 | chr19 | 47542293 | + | 1.34E-07 | 0.9999999 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for TCF12-NPAS1 |
Go to FGviewer for the breakpoints of chr15:57213296-chr19:47542294 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | NPAS1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: May control regulatory pathways relevant to schizophrenia and to psychotic illness. May play a role in late central nervous system development by modulating EPO expression in response to cellular oxygen level (By similarity). Forms a heterodimer that binds core DNA sequence 5'-TACGTG-3' within the hypoxia response element (HRE) leading to transcriptional repression on its target gene TH (By similarity). {ECO:0000250, ECO:0000250|UniProtKB:P97459}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000267811 | + | 3 | 20 | 19_27 | 49.333333333333336 | 1821.3333333333333 | Motif | Note=9aaTAD |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000333725 | + | 3 | 21 | 19_27 | 49.333333333333336 | 1420.0 | Motif | Note=9aaTAD |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000438423 | + | 3 | 21 | 19_27 | 49.333333333333336 | 1398.3333333333333 | Motif | Note=9aaTAD |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000557843 | + | 3 | 20 | 19_27 | 49.333333333333336 | 1301.0 | Motif | Note=9aaTAD |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000449844 | 4 | 11 | 293_359 | 229.33333333333334 | 591.0 | Domain | PAS 2 | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000449844 | 4 | 11 | 365_408 | 229.33333333333334 | 591.0 | Domain | Note=PAC | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000602212 | 5 | 12 | 293_359 | 229.33333333333334 | 591.0 | Domain | PAS 2 | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000602212 | 5 | 12 | 365_408 | 229.33333333333334 | 591.0 | Domain | Note=PAC |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000267811 | + | 3 | 20 | 577_630 | 49.333333333333336 | 1821.3333333333333 | Domain | bHLH |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000333725 | + | 3 | 21 | 577_630 | 49.333333333333336 | 1420.0 | Domain | bHLH |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000343827 | + | 1 | 13 | 577_630 | 0 | 1254.6666666666667 | Domain | bHLH |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000438423 | + | 3 | 21 | 577_630 | 49.333333333333336 | 1398.3333333333333 | Domain | bHLH |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000557843 | + | 3 | 20 | 577_630 | 49.333333333333336 | 1301.0 | Domain | bHLH |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000343827 | + | 1 | 13 | 19_27 | 0 | 1254.6666666666667 | Motif | Note=9aaTAD |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000267811 | + | 3 | 20 | 119_140 | 49.333333333333336 | 1821.3333333333333 | Region | Note=Leucine-zipper |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000267811 | + | 3 | 20 | 632_655 | 49.333333333333336 | 1821.3333333333333 | Region | Note=Class A specific domain |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000333725 | + | 3 | 21 | 119_140 | 49.333333333333336 | 1420.0 | Region | Note=Leucine-zipper |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000333725 | + | 3 | 21 | 632_655 | 49.333333333333336 | 1420.0 | Region | Note=Class A specific domain |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000343827 | + | 1 | 13 | 119_140 | 0 | 1254.6666666666667 | Region | Note=Leucine-zipper |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000343827 | + | 1 | 13 | 632_655 | 0 | 1254.6666666666667 | Region | Note=Class A specific domain |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000438423 | + | 3 | 21 | 119_140 | 49.333333333333336 | 1398.3333333333333 | Region | Note=Leucine-zipper |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000438423 | + | 3 | 21 | 632_655 | 49.333333333333336 | 1398.3333333333333 | Region | Note=Class A specific domain |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000557843 | + | 3 | 20 | 119_140 | 49.333333333333336 | 1301.0 | Region | Note=Leucine-zipper |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000557843 | + | 3 | 20 | 632_655 | 49.333333333333336 | 1301.0 | Region | Note=Class A specific domain |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000449844 | 4 | 11 | 211_222 | 229.33333333333334 | 591.0 | Compositional bias | Note=Poly-Ser | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000602212 | 5 | 12 | 211_222 | 229.33333333333334 | 591.0 | Compositional bias | Note=Poly-Ser | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000449844 | 4 | 11 | 135_207 | 229.33333333333334 | 591.0 | Domain | PAS 1 | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000449844 | 4 | 11 | 45_98 | 229.33333333333334 | 591.0 | Domain | bHLH | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000602212 | 5 | 12 | 135_207 | 229.33333333333334 | 591.0 | Domain | PAS 1 | |
Tgene | NPAS1 | chr15:57213296 | chr19:47542294 | ENST00000602212 | 5 | 12 | 45_98 | 229.33333333333334 | 591.0 | Domain | bHLH |
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Fusion Gene Sequence for TCF12-NPAS1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000438423_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1653nt_BP=444nt GGCGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTAT TCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGC AAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGG AGACGGGGCGGCAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGG ACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCA GCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACG TCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCC CGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAG TCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCC AGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGT CTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCC AAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTC CGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAA CCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGG TCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGG TGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGG GCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAG GACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGAGAATTAAA >In-frame_ENST00000438423_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=422AA_start in transcript=260_stop in transcript=1528 MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF -------------------------------------------------------------- >In-frame_ENST00000438423_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1608nt_BP=444nt GGCGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTAT TCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGC AAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGG AGACGGGGCGGCAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGG ACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCA GCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACG TCAAGGCCTCAGGGTACAAGCAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGC CCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCA GAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCC GCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGC AGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTG GCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGC CTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGG AAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAG GGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGC CGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTC CGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACT >In-frame_ENST00000438423_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=423AA_start in transcript=260_stop in transcript=1531 MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR GLHVKASGYKQVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDA TRIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPT EPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAG -------------------------------------------------------------- >In-frame_ENST00000438423_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1637nt_BP=444nt GGCGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTAT TCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGC AAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGG AGACGGGGCGGCAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGG ACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCA GCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACG TCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCC CGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAG TCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCC AGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGT CTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCC AAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTC CGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAA CCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGG TCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGG TGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGG GCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAG GACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGAGAATTAAA >In-frame_ENST00000438423_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=422AA_start in transcript=260_stop in transcript=1528 MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF -------------------------------------------------------------- >In-frame_ENST00000438423_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1589nt_BP=444nt GGCGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTAT TCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGC AAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGG AGACGGGGCGGCAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGG ACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCA GCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACG TCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCC CGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAG TCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCC AGAGCCACGTGGACTCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCAT GTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAG GAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAG ACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCG GCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGG GACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCG GAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTAC CCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCC >In-frame_ENST00000438423_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=270AA_start in transcript=1532_stop in transcript=720 MGDPGCRRVRRRQLCQSSVPLPRQPGARGPRVGQAQGRVKGLRERGARTQPLQVRVHQAQLRGAVADGAGCAQAPHHRRQEARVQEGGRG VPGRRQAPWPHRILLQDPCPDDRGELGPRCGRVAGGILVATVLGAFGFPRAGLHFDAFALGLGGLVLRWGSLLPFRRRLRLCGLWPRAGC LLTGHAGWKLEGIQRSLATLGLAEHVADPKHMVLPGALPAPSHCGHRLQPHEAPGTSPRGSGGSSWRPVRGQTGSSCGPPALRAPGPCGR -------------------------------------------------------------- >In-frame_ENST00000267811_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1661nt_BP=452nt CGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTC GGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAA AGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAG ACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGA CCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATC AGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGG GCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACAC GTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGA GAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAG GATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTG GCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGA GGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCC GGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCC GAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCG GGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCT GCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCT GGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGG GGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGA >In-frame_ENST00000267811_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=410AA_start in transcript=304_stop in transcript=1536 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG -------------------------------------------------------------- >In-frame_ENST00000267811_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1616nt_BP=452nt CGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTC GGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAA AGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAG ACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGA CCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATC AGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGG GCTGCACGTCAAGGCCTCAGGGTACAAGCAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCA CACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTG TGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCAC GAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGT GTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGC CGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGA GCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGG CCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCAT CCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTT CCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAG GCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAA >In-frame_ENST00000267811_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=411AA_start in transcript=304_stop in transcript=1539 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKQV IHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD KGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAA PAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTP -------------------------------------------------------------- >In-frame_ENST00000267811_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1645nt_BP=452nt CGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTC GGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAA AGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAG ACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGA CCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATC AGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGG GCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACAC GTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGA GAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAG GATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTG GCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGA GGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCC GGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCC GAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCG GGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCT GCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCT GGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGG GGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGA >In-frame_ENST00000267811_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=410AA_start in transcript=304_stop in transcript=1536 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG -------------------------------------------------------------- >In-frame_ENST00000267811_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1597nt_BP=452nt CGCGGAGGGATCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTC GGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAA AGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAG ACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGA CCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATC AGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGG GCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACAC GTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGA GAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAG GATCCGCCAGAGCCACGTGGACTCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGG AGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGG CCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGG CCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCA GCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGC CTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACG GCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCC TGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCG >In-frame_ENST00000267811_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=270AA_start in transcript=1540_stop in transcript=728 MGDPGCRRVRRRQLCQSSVPLPRQPGARGPRVGQAQGRVKGLRERGARTQPLQVRVHQAQLRGAVADGAGCAQAPHHRRQEARVQEGGRG VPGRRQAPWPHRILLQDPCPDDRGELGPRCGRVAGGILVATVLGAFGFPRAGLHFDAFALGLGGLVLRWGSLLPFRRRLRLCGLWPRAGC LLTGHAGWKLEGIQRSLATLGLAEHVADPKHMVLPGALPAPSHCGHRLQPHEAPGTSPRGSGGSSWRPVRGQTGSSCGPPALRAPGPCGR -------------------------------------------------------------- >In-frame_ENST00000452095_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1651nt_BP=442nt TCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTCGGGGGGACCG ACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAAAGTGAACCGA GCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGC AGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGAC TTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGC CTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTC AAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCG GCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTC AGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAG AGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCT GTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAA ACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCG ACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACC AAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTC CTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTG GTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGC CCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGA CTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGAGAATTAAACG >In-frame_ENST00000452095_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=410AA_start in transcript=294_stop in transcript=1526 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG -------------------------------------------------------------- >In-frame_ENST00000452095_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1606nt_BP=442nt TCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTCGGGGGGACCG ACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAAAGTGAACCGA GCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGC AGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGAC TTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGC CTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTC AAGGCCTCAGGGTACAAGCAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCC CCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGA GTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGC CAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAG TCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGC CAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCT CCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAA ACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGG GTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCG GTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCG GGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGA >In-frame_ENST00000452095_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=411AA_start in transcript=294_stop in transcript=1529 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKQV IHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD KGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAA PAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTP -------------------------------------------------------------- >In-frame_ENST00000452095_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1635nt_BP=442nt TCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTCGGGGGGACCG ACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAAAGTGAACCGA GCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGC AGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGAC TTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGC CTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTC AAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCG GCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTC AGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAG AGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCT GTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAA ACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCG ACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACC AAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTC CTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTG GTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGC CCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGA CTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGAGAATTAAACG >In-frame_ENST00000452095_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=410AA_start in transcript=294_stop in transcript=1526 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG -------------------------------------------------------------- >In-frame_ENST00000452095_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1587nt_BP=442nt TCCGGAGGCGAGCCGAGCGCGGTGGTGAGGCCGCCTCAGCGAAAAAAATGTCCGCCTGAAGAGACCCACAAGTTCTATTCGGGGGGACCG ACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGACCCGAGAGCTCGTGCGGGGCAAAGTGAACCGA GCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGC AGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGAC TTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGC CTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTC AAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCG GCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTC AGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAG AGCCACGTGGACTCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGT GCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGA GGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGAC CCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGC CACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGA CCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGA GCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCC GGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCA >In-frame_ENST00000452095_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=270AA_start in transcript=1530_stop in transcript=718 MGDPGCRRVRRRQLCQSSVPLPRQPGARGPRVGQAQGRVKGLRERGARTQPLQVRVHQAQLRGAVADGAGCAQAPHHRRQEARVQEGGRG VPGRRQAPWPHRILLQDPCPDDRGELGPRCGRVAGGILVATVLGAFGFPRAGLHFDAFALGLGGLVLRWGSLLPFRRRLRLCGLWPRAGC LLTGHAGWKLEGIQRSLATLGLAEHVADPKHMVLPGALPAPSHCGHRLQPHEAPGTSPRGSGGSSWRPVRGQTGSSCGPPALRAPGPCGR -------------------------------------------------------------- >In-frame_ENST00000333725_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1592nt_BP=383nt AGAGACCCACAAGTTCTATTCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGAC CCGAGAGCTCGTGCGGGGCAAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAA TCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGG GACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGG AAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAA ATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGG CCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGG TCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGT CCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCA GCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAG CCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCC GGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACG CATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCC CGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCAC CCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGT GTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGG CACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCC >In-frame_ENST00000333725_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=410AA_start in transcript=235_stop in transcript=1467 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG -------------------------------------------------------------- >In-frame_ENST00000333725_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1547nt_BP=383nt AGAGACCCACAAGTTCTATTCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGAC CCGAGAGCTCGTGCGGGGCAAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAA TCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGG GACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGG AAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAA ATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGCAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCT GGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCT GGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTT TGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCT GCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGT CAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAG CCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAA ACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAG GCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCC CACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCT GGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGC GGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAG >In-frame_ENST00000333725_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=411AA_start in transcript=235_stop in transcript=1470 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKQV IHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLD KGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAA PAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTP -------------------------------------------------------------- >In-frame_ENST00000333725_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1576nt_BP=383nt AGAGACCCACAAGTTCTATTCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGAC CCGAGAGCTCGTGCGGGGCAAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAA TCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGG GACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGG AAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAA ATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGG CCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGG TCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGT CCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCA GCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAG CCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCC GGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACG CATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCC CGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCAC CCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGT GTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGG CACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCC >In-frame_ENST00000333725_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=410AA_start in transcript=235_stop in transcript=1467 MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVI HVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG -------------------------------------------------------------- >In-frame_ENST00000333725_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1528nt_BP=383nt AGAGACCCACAAGTTCTATTCGGGGGGACCGACAGCCCGCCCCGGGAGGAAGGGGCGGCCAGGCCCGAAAGCCGCCTCCCCCTCCCAGAC CCGAGAGCTCGTGCGGGGCAAAGTGAACCGAGCCGCTGGGCGGTGCAAGGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAA TCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGGACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGG GACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGG AAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAA ATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGG CCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGG TCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGT CCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTG GGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCT TCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGG CTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACA GTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGG TGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCA CACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGG CCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGG >In-frame_ENST00000333725_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=259AA_start in transcript=641_stop in transcript=1420 MLVRAESATTWTWGPQSWWAAAATSLSTDRTPRGSARATWTRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLP ASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPW -------------------------------------------------------------- >In-frame_ENST00000557843_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1444nt_BP=235nt GGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGAAGTGGCCGAAGATG AATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTT AATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTG GTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCAC GTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCAT GGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCA GAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGT CAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAG AGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCA GCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCG GAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAG GATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGG GGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACC ATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCG CCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCT GCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAGCCCTGAGAATTAAACGCCGGCTCTCCCTGCAGTGGTTTGGGCT >In-frame_ENST00000557843_ENST00000602212_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=422AA_start in transcript=51_stop in transcript=1319 MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF -------------------------------------------------------------- >In-frame_ENST00000557843_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1399nt_BP=235nt GGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGAAGTGGCCGAAGATG AATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTT AATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTG GTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGCAGGTCATC CACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTC CATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCC TCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAG GGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGG AAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTT CCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCA GCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGAC GAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCA TGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGC ACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTAC CCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGAC >In-frame_ENST00000557843_ENST00000602189_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=423AA_start in transcript=51_stop in transcript=1322 MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR GLHVKASGYKQVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDA TRIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPT EPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAG -------------------------------------------------------------- >In-frame_ENST00000557843_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1428nt_BP=235nt GGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGAAGTGGCCGAAGATG AATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTT AATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTG GTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCAC GTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCAT GGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCA GAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAGGGT CAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAG AGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCA GCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCG GAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAG GATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGG GGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACC ATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCG CCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCT >In-frame_ENST00000557843_ENST00000449844_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=422AA_start in transcript=51_stop in transcript=1319 MDAETGRQKWPKMNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSEASLTKVPPSSLVQERSFFVRMKSTLTKR GLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDAT RIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTE PEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGF -------------------------------------------------------------- >In-frame_ENST00000557843_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(transcript)=1380nt_BP=235nt GGGGAAGCCCAAGCCCGTTCTCCCGGCCAAAGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGCAGAAGTGGCCGAAGATG AATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCGATGTTTTCCCCACCTGTT AATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCCCTG GTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCAC GTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCAT GGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCA GAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTCGTGCCGGGGGCTT CGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCA AGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCAC AGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCC CGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGT CATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGG CTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCA GAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCG GAAGGGGGACTGAGGACTGGCAGAGCTGCCGGCGCCGGACCCTGCGACAACCGGGGTCCCCCAGGACAGTAGGCCCGGCTCTGCCCGTAG >In-frame_ENST00000557843_ENST00000439365_TCGA-EJ-A8FO-01A_TCF12_chr15_57213296_+_NPAS1_chr19_47542294_length(amino acids)=259AA_start in transcript=493_stop in transcript=1272 MLVRAESATTWTWGPQSWWAAAATSLSTDRTPRGSARATWTRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQLP ASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPW -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for TCF12-NPAS1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000267811 | + | 3 | 20 | 182_196 | 49.333333333333336 | 1821.3333333333333 | RUNX1T1 |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000333725 | + | 3 | 21 | 182_196 | 49.333333333333336 | 1420.0 | RUNX1T1 |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000343827 | + | 1 | 13 | 182_196 | 0 | 1254.6666666666667 | RUNX1T1 |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000438423 | + | 3 | 21 | 182_196 | 49.333333333333336 | 1398.3333333333333 | RUNX1T1 |
Hgene | TCF12 | chr15:57213296 | chr19:47542294 | ENST00000557843 | + | 3 | 20 | 182_196 | 49.333333333333336 | 1301.0 | RUNX1T1 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for TCF12-NPAS1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for TCF12-NPAS1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TCF12 | C3715051 | CRANIOSYNOSTOSIS 3 | 3 | GENOMICS_ENGLAND;UNIPROT |
Hgene | TCF12 | C0010278 | Craniosynostosis | 1 | CTD_human |
Hgene | TCF12 | C0030044 | Acrocephaly | 1 | CTD_human |
Hgene | TCF12 | C0221356 | Brachycephaly | 1 | CTD_human;ORPHANET |
Hgene | TCF12 | C0265529 | Plagiocephaly | 1 | ORPHANET |
Hgene | TCF12 | C0265534 | Scaphycephaly | 1 | CTD_human |
Hgene | TCF12 | C0265535 | Trigonocephaly | 1 | CTD_human |
Hgene | TCF12 | C1275278 | Extraskeletal Myxoid Chondrosarcoma | 1 | ORPHANET |
Hgene | TCF12 | C1833340 | Synostotic Posterior Plagiocephaly | 1 | CTD_human |
Hgene | TCF12 | C1856266 | Coronal craniosynostosis | 1 | GENOMICS_ENGLAND |
Hgene | TCF12 | C1860819 | Metopic synostosis | 1 | CTD_human |
Hgene | TCF12 | C2931150 | Synostotic Anterior Plagiocephaly | 1 | CTD_human |
Hgene | TCF12 | C4551902 | Craniosynostosis, Type 1 | 1 | CTD_human |
Tgene | NPAS1 | C0036341 | Schizophrenia | 2 | PSYGENET |
Tgene | NPAS1 | C0033975 | Psychotic Disorders | 1 | PSYGENET |
Tgene | NPAS1 | C0349204 | Nonorganic psychosis | 1 | PSYGENET |