FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:TIAM1-FBLIM1 (FusionGDB2 ID:90207)

Fusion Gene Summary for TIAM1-FBLIM1

check button Fusion gene summary
Fusion gene informationFusion gene name: TIAM1-FBLIM1
Fusion gene ID: 90207
HgeneTgene
Gene symbol

TIAM1

FBLIM1

Gene ID

7074

54751

Gene nameTIAM Rac1 associated GEF 1filamin binding LIM protein 1
SynonymsTIAM-1CAL|FBLP-1|FBLP1
Cytomap

21q22.11

1p36.21

Type of geneprotein-codingprotein-coding
DescriptionT-lymphoma invasion and metastasis-inducing protein 1T cell lymphoma invasion and metastasis 1human T-lymphoma invasion and metastasis inducing TIAM1 proteinfilamin-binding LIM protein 1CSX-associated LIMMIG2-interacting proteinmigfilinmitogen-inducible 2 interacting protein
Modification date2020031320200313
UniProtAcc.

Q8WUP2

Ensembl transtripts involved in fusion geneENST00000286827, ENST00000541036, 
ENST00000469412, 		ENST00000375771, 
ENST00000375766, ENST00000400773, 
ENST00000441801, ENST00000332305, 
ENST00000509138, 
Fusion gene scores* DoF score21 X 17 X 10=35705 X 7 X 6=210
# samples 248
** MAII scorelog2(24/3570*10)=-3.89481776330794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/210*10)=-1.39231742277876
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TIAM1 [Title/Abstract] AND FBLIM1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointTIAM1(32711558)-FBLIM1(16111043), # samples:2
TIAM1(32711557)-FBLIM1(16111042), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTIAM1

GO:0008284

positive regulation of cell proliferation

25032858

HgeneTIAM1

GO:0010717

regulation of epithelial to mesenchymal transition

20826792

HgeneTIAM1

GO:0030335

positive regulation of cell migration

25032858

HgeneTIAM1

GO:0032092

positive regulation of protein binding

23109420

HgeneTIAM1

GO:0034622

cellular protein-containing complex assembly

23109420

HgeneTIAM1

GO:0090630

activation of GTPase activity

23109420


check buttonFusion gene breakpoints across TIAM1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across FBLIM1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-AC-A3OD-01ATIAM1chr21

32711558

-FBLIM1chr1

16111043

+
ChimerDB4BRCATCGA-AC-A3ODTIAM1chr21

32711557

-FBLIM1chr1

16111042

+
ChimerDB4BRCATCGA-AC-A3ODTIAM1chr21

32711557

-FBLIM1chr1

16111042

+
ChimerDB4BRCATCGA-AC-A3OD-01BTIAM1chr21

32711558

-FBLIM1chr1

16111043

+


Top

Fusion Gene ORF analysis for TIAM1-FBLIM1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000286827ENST00000375771TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3CDSENST00000286827ENST00000375766TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3CDSENST00000286827ENST00000400773TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-intronENST00000286827ENST00000441801TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-intronENST00000286827ENST00000332305TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3UTRENST00000286827ENST00000509138TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
intron-3CDSENST00000541036ENST00000375771TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
intron-3CDSENST00000541036ENST00000375766TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
intron-3CDSENST00000541036ENST00000400773TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
intron-intronENST00000541036ENST00000441801TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
intron-intronENST00000541036ENST00000332305TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
intron-3UTRENST00000541036ENST00000509138TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3CDSENST00000469412ENST00000375771TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3CDSENST00000469412ENST00000375766TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3CDSENST00000469412ENST00000400773TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-intronENST00000469412ENST00000441801TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-intronENST00000469412ENST00000332305TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3UTRENST00000469412ENST00000509138TIAM1chr21

32711558

-FBLIM1chr1

16111043

+
5UTR-3CDSENST00000286827ENST00000375771TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3CDSENST00000286827ENST00000375766TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3CDSENST00000286827ENST00000400773TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-intronENST00000286827ENST00000441801TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-intronENST00000286827ENST00000332305TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3UTRENST00000286827ENST00000509138TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
intron-3CDSENST00000541036ENST00000375771TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
intron-3CDSENST00000541036ENST00000375766TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
intron-3CDSENST00000541036ENST00000400773TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
intron-intronENST00000541036ENST00000441801TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
intron-intronENST00000541036ENST00000332305TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
intron-3UTRENST00000541036ENST00000509138TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3CDSENST00000469412ENST00000375771TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3CDSENST00000469412ENST00000375766TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3CDSENST00000469412ENST00000400773TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-intronENST00000469412ENST00000441801TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-intronENST00000469412ENST00000332305TIAM1chr21

32711557

-FBLIM1chr1

16111042

+
5UTR-3UTRENST00000469412ENST00000509138TIAM1chr21

32711557

-FBLIM1chr1

16111042

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for TIAM1-FBLIM1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
TIAM1chr2132711557-FBLIM1chr116111042+1.30E-050.999987
TIAM1chr2132711557-FBLIM1chr116111042+1.30E-050.999987
TIAM1chr2132711557-FBLIM1chr116111042+1.30E-050.999987
TIAM1chr2132711557-FBLIM1chr116111042+1.30E-050.999987
TIAM1chr2132711557-FBLIM1chr116111042+1.30E-050.999987
TIAM1chr2132711557-FBLIM1chr116111042+1.30E-050.999987

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for TIAM1-FBLIM1


check button Go to

FGviewer for the breakpoints of :-:

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.FBLIM1

Q8WUP2

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Serves as an anchoring site for cell-ECM adhesion proteins and filamin-containing actin filaments. Is implicated in cell shape modulation (spreading) and motility. May participate in the regulation of filamin-mediated cross-linking and stabilization of actin filaments. May also regulate the assembly of filamin-containing signaling complexes that control actin assembly. Promotes dissociation of FLNA from ITGB3 and ITGB7. Promotes activation of integrins and regulates integrin-mediated cell-cell adhesion. {ECO:0000269|PubMed:12496242, ECO:0000269|PubMed:12679033, ECO:0000269|PubMed:18829455, ECO:0000269|PubMed:19074766}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

Fusion Gene Sequence for TIAM1-FBLIM1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for TIAM1-FBLIM1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for TIAM1-FBLIM1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for TIAM1-FBLIM1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneTIAM1C0007137Squamous cell carcinoma1CTD_human
HgeneTIAM1C0026640Mouth Neoplasms1CTD_human
HgeneTIAM1C0153381Malignant neoplasm of mouth1CTD_human
HgeneTIAM1C1862939AMYOTROPHIC LATERAL SCLEROSIS 11CTD_human
HgeneTIAM1C1862941Amyotrophic Lateral Sclerosis, Sporadic1CTD_human
HgeneTIAM1C4551993Amyotrophic Lateral Sclerosis, Familial1CTD_human
TgeneFBLIM1C1864997Majeed syndrome1GENOMICS_ENGLAND