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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:TPCN1-OAS3 (FusionGDB2 ID:92620) |
Fusion Gene Summary for TPCN1-OAS3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: TPCN1-OAS3 | Fusion gene ID: 92620 | Hgene | Tgene | Gene symbol | TPCN1 | OAS3 | Gene ID | 53373 | 4940 |
Gene name | two pore segment channel 1 | 2'-5'-oligoadenylate synthetase 3 | |
Synonyms | TPC1 | p100|p100OAS | |
Cytomap | 12q24.13 | 12q24.13 | |
Type of gene | protein-coding | protein-coding | |
Description | two pore calcium channel protein 1two-pore channel 1, homologvoltage-dependent calcium channel protein TPC1 | 2'-5'-oligoadenylate synthase 3(2-5')oligo(A) synthase 3(2-5')oligo(A) synthetase 32'-5'-oligoadenylate synthetase 3, 100kDa2'-5'oligoadenylate synthetase p1002-5A synthase 32-5A synthetase 3p100 OAS | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000335509, ENST00000550785, ENST00000541517, ENST00000392569, ENST00000546787, | ENST00000228928, ENST00000551007, ENST00000548514, ENST00000546638, | |
Fusion gene scores | * DoF score | 11 X 9 X 5=495 | 3 X 3 X 3=27 |
# samples | 11 | 3 | |
** MAII score | log2(11/495*10)=-2.16992500144231 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TPCN1 [Title/Abstract] AND OAS3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | TPCN1(113664769)-OAS3(113405223), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TPCN1 | GO:0010508 | positive regulation of autophagy | 22012985 |
Tgene | OAS3 | GO:0009615 | response to virus | 19056102 |
Tgene | OAS3 | GO:0045071 | negative regulation of viral genome replication | 19056102|19923450 |
Tgene | OAS3 | GO:0051607 | defense response to virus | 19923450 |
Tgene | OAS3 | GO:0060700 | regulation of ribonuclease activity | 19923450 |
Fusion gene breakpoints across TPCN1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across OAS3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-CD-8527-01A | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
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Fusion Gene ORF analysis for TPCN1-OAS3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000335509 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000335509 | ENST00000551007 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000335509 | ENST00000548514 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000335509 | ENST00000546638 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
In-frame | ENST00000550785 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000550785 | ENST00000551007 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000550785 | ENST00000548514 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000550785 | ENST00000546638 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
In-frame | ENST00000541517 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000541517 | ENST00000551007 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000541517 | ENST00000548514 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
5CDS-intron | ENST00000541517 | ENST00000546638 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-3CDS | ENST00000392569 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-intron | ENST00000392569 | ENST00000551007 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-intron | ENST00000392569 | ENST00000548514 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-intron | ENST00000392569 | ENST00000546638 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-3CDS | ENST00000546787 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-intron | ENST00000546787 | ENST00000551007 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-intron | ENST00000546787 | ENST00000548514 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
intron-intron | ENST00000546787 | ENST00000546638 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000335509 | TPCN1 | chr12 | 113664769 | + | ENST00000228928 | OAS3 | chr12 | 113405223 | + | 4277 | 426 | 290 | 1000 | 236 |
ENST00000550785 | TPCN1 | chr12 | 113664769 | + | ENST00000228928 | OAS3 | chr12 | 113405223 | + | 4348 | 497 | 169 | 1071 | 300 |
ENST00000541517 | TPCN1 | chr12 | 113664769 | + | ENST00000228928 | OAS3 | chr12 | 113405223 | + | 4181 | 330 | 2 | 904 | 300 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000335509 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + | 0.008431735 | 0.99156827 |
ENST00000550785 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + | 0.017466692 | 0.9825333 |
ENST00000541517 | ENST00000228928 | TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405223 | + | 0.015267099 | 0.9847329 |
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Fusion Genomic Features for TPCN1-OAS3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405222 | + | 0.000171715 | 0.9998282 |
TPCN1 | chr12 | 113664769 | + | OAS3 | chr12 | 113405222 | + | 0.000171715 | 0.9998282 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for TPCN1-OAS3 |
Go to FGviewer for the breakpoints of chr12:113664769-chr12:113405223 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 1_112 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 1_112 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 769_796 | 37.333333333333336 | 817.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 769_796 | 109.33333333333333 | 889.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 769_796 | 109.33333333333333 | 889.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 263_286 | 37.333333333333336 | 817.0 | Intramembrane | Helical%3B Pore-forming |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 630_653 | 37.333333333333336 | 817.0 | Intramembrane | Helical%3B Pore-forming |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 263_286 | 109.33333333333333 | 889.0 | Intramembrane | Helical%3B Pore-forming |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 630_653 | 109.33333333333333 | 889.0 | Intramembrane | Helical%3B Pore-forming |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 263_286 | 109.33333333333333 | 889.0 | Intramembrane | Helical%3B Pore-forming |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 630_653 | 109.33333333333333 | 889.0 | Intramembrane | Helical%3B Pore-forming |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 134_134 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 156_177 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 199_200 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 1_112 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 221_234 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 256_262 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 287_294 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 316_444 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 466_479 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 501_503 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 527_534 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 550_573 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 595_629 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 654_670 | 37.333333333333336 | 817.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 692_816 | 37.333333333333336 | 817.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 134_134 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 156_177 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 199_200 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 221_234 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 256_262 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 287_294 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 316_444 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 466_479 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 501_503 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 527_534 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 550_573 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 595_629 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 654_670 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 692_816 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 134_134 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 156_177 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 199_200 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 221_234 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 256_262 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 287_294 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 316_444 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 466_479 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 501_503 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 527_534 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 550_573 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 595_629 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 654_670 | 109.33333333333333 | 889.0 | Topological domain | Extracellular |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 692_816 | 109.33333333333333 | 889.0 | Topological domain | Cytoplasmic |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 113_133 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 135_155 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 178_198 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 201_220 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 235_255 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 295_315 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 445_465 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 480_500 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 504_526 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 535_549 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 574_594 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000335509 | + | 2 | 28 | 671_691 | 37.333333333333336 | 817.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 113_133 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 135_155 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 178_198 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 201_220 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 235_255 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 295_315 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 445_465 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 480_500 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 504_526 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 535_549 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 574_594 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000541517 | + | 2 | 28 | 671_691 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 113_133 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 135_155 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 178_198 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 201_220 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 235_255 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 295_315 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 445_465 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 480_500 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 504_526 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 535_549 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 574_594 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II |
Hgene | TPCN1 | chr12:113664769 | chr12:113405223 | ENST00000550785 | + | 3 | 29 | 671_691 | 109.33333333333333 | 889.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II |
Tgene | OAS3 | chr12:113664769 | chr12:113405223 | ENST00000228928 | 11 | 16 | 344_410 | 896.3333333333334 | 1088.0 | Region | Linker | |
Tgene | OAS3 | chr12:113664769 | chr12:113405223 | ENST00000228928 | 11 | 16 | 411_742 | 896.3333333333334 | 1088.0 | Region | OAS domain 2 | |
Tgene | OAS3 | chr12:113664769 | chr12:113405223 | ENST00000228928 | 11 | 16 | 6_343 | 896.3333333333334 | 1088.0 | Region | OAS domain 1 | |
Tgene | OAS3 | chr12:113664769 | chr12:113405223 | ENST00000228928 | 11 | 16 | 750_1084 | 896.3333333333334 | 1088.0 | Region | OAS domain 3 |
Top |
Fusion Gene Sequence for TPCN1-OAS3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000335509_ENST00000228928_TCGA-CD-8527-01A_TPCN1_chr12_113664769_+_OAS3_chr12_113405223_length(transcript)=4277nt_BP=426nt GAGAGGACGGTAGGCGGTGGATAGGAGAGCTGGCGCAGCTGCCCTGGTGGCAGTGGCTGAAGTGGCGGCGGCTTCGGCGGCTGCGGCGGC TGCAACAGCTTCGGGCTCGGGGTTTTGGCGGCGGCGCCGGCGGGCTAGGCTGCGCGGTGCGGACCCCGGCGCGCGGTCCGGGTTGCTGGG GCGGCGCGTAAGATGCCTCTAATGGAGGAGTTTCTGAGCAGCACCCCTGGCCCAGTGGCTTTGAAAGGGAGCTCAAACCAGAGACTATTT CAAGCCCTGGATATCATATCCTGAGGGCCACAGGAGAAGAGAACATGGCTGTGAGTTTGGATGACGACGTGCCGCTCATCCTGACCTTGG ATGAGGGTGGCAGTGCCCCACTGGCTCCCTCCAACGGCCTGGGCCAAGAAGAGCTACCTAGCAAAAGCCAGCTGGTCTCTGGCTCCAGGC CCAGCTCTCAAGTCTACGTCGACCTCATCCACAGCTACAGCAATGCGGGCGAGTACTCCACCTGCTTCACAGAGCTACAACGGGACTTCA TCATCTCTCGCCCTACCAAGCTGAAGAGCCTGATCCGGCTGGTGAAGCACTGGTACCAGCAGTGTACCAAGATCTCCAAGGGGAGAGGCT CCCTACCCCCACAGCACGGGCTGGAACTCCTGACTGTGTATGCCTGGGAGCAGGGCGGGAAGGACTCCCAGTTCAACATGGCTGAGGGCT TCCGCACGGTCCTGGAGCTGGTCACCCAGTACCGCCAGCTCTGTATCTACTGGACCATCAACTACAACGCCAAGGACAAGACTGTTGGAG ACTTCCTGAAACAGCAGCTTCAGAAGCCCAGGCCTATCATCCTGGATCCGGCTGACCCGACAGGCAACCTGGGCCACAATGCCCGCTGGG ACCTGCTGGCCAAGGAAGCTGCAGCCTGCACATCTGCCCTGTGCTGCATGGGACGGAATGGCATCCCCATCCAGCCATGGCCAGTGAAGG CTGCTGTGTGAAGTTGAGAAAATCAGCGGTCCTACTGGATGAAGAGAAGATGGACACCAGCCCTCAGCATGAGGAAATTCAGGGTCCCCT ACCAGATGAGAGAGATTGTGTACATGTGTGTGTGAGCACATGTGTGCATGTGTGTGCACACGTGTGCATGTGTGTGTTTTAGTGAATCTG CTCTCCCAGCTCACACACTCCCCTGCCTCCCATGGCTTACACACTAGGATCCAGACTCCATGGTTTGACACCAGCCTGCGTTTGCAGCTT CTCTGTCACTTCCATGACTCTATCCTCATACCACCACTGCTGCTTCCCACCCAGCTGAGAATGCCCCCTCCTCCCTGACTCCTCTCTGCC CATGCAAATTAGCTCACATCTTTCCTCCTGCTGCAATCCATCCCTTCCTCCCATTGGCCTCTCCTTGCCAAATCTAAATAGTTTATATAG GGATGGCAGAGAGTTCCCATCTCATCTGTCAGCCACAGTCATTTGGTACTGGCTACCTGGAGCCTTATCTTCTGAAGGGTTTTAAAGAAT GGCCAATTAGCTGAGAAGAATTATCTAATCAATTAGTGATGTCTGCCATGGATGCAGTAGAGGAAAGTGGTGGTACAAGTGCCATGATTG ATTAGCAATGTCTGCACTGGATACGGAAAAAAGAAGGTGCTTGCAGGTTTACAGTGTATATGTGGGCTATTGAAGAGCCCTCTGAGCTCG GTTGCTAGCAGGAGAGCATGCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACC CTCTTGTTGGACACCTAATTGGATGCCTCTTCATGAGAGGCCTCCTTTTCTTCACCTTTTATGCTGCACTCCTCCCCTAGTTTACACATC TTGATGCTGTGGCTCAGTTTGCCTTCCTGAATTTTTATTGGGTCCCTGTTTTCTCTCCTAACATGCTGAGATTCTGCATCCCCACAGCCT AAACTGAGCCAGTGGCCAAACAACCGTGCTCAGCCTGTTTCTCTCTGCCCTCTAGAGCAAGGCCCACCAGGTCCATCCAGGAGGCTCTCC TGACCTCAAGTCCAACAACAGTGTCCACACTAGTCAAGGTTCAGCCCAGAAAACAGAAAGCACTCTAGGAATCTTAGGCAGAAAGGGATT TTATCTAAATCACTGGAAAGGCTGGAGGAGCAGAAGGCAGAGGCCACCACTGGACTATTGGTTTCAATATTAGACCACTGTAGCCGAATC AGAGGCCAGAGAGCAGCCACTGCTACTGCTAATGCCACCACTACCCCTGCCATCACTGCCCCACATGGACAAAACTGGAGTCGAGACCTA GGTTAGATTCCTGCAACCACAAACATCCATCAGGGATGGCCAGCTGCCAGAGCTGCGGGAAGACGGATCCCACCTCCCTTTCTTAGCAGA ATCTAAATTACAGCCAGACCTCTGGCTGCAGAGGAGTCTGAGACATGTATGATTGAATGGGTGCCAAGTGCCAGGGGGCGGAGTCCCCAG CAGATGCATCCTGGCCATCTGTTGCGTGGATGAGGGAGTGGGTCTATCTCAGAGGAAGGAACAGGAAACAAAGAAAGGAAGCCACTGAAC ATCCCTTCTCTGCTCCACAGGAGTGCCTTAGACAGCCTGACTCTCCACAAACCACTGTTAAAACTTACCTGCTAGGAATGCTAGATTGAA TGGGATGGGAAGAGCCTTCCCTCATTATTGTCATTCTTGGAGAGAGGTGAGCAACCAAGGGAAGCTCCTCTGATTCACCTAGAACCTGTT CTCTGCCGTCTTTGGCTCAGCCTACAGAGACTAGAGTAGGTGAAGGGACAGAGGACAGGGCTTCTAATACCTGTGCCATATTGACAGCCT CCATCCCTGTCCCCCATCTTGGTGCTGAACCAACGCTAAGGGCACCTTCTTAGACTCACCTCATCGATACTGCCTGGTAATCCAAAGCTA GAACTCTCAGGACCCCAAACTCCACCTCTTGGATTGGCCCTGGCTGCTGCCACACACATATCCAAGAGCTCAGGGCCAGTTCTGGTGGGC AGCAGAGACCTGCTCTGCCAAGTTGTCCAGCAGCAGAGTGGCCCTGGCCTGGGCATCACAAGCCAGTGATGCTCCTGGGAAGACCAGGTG GCAGGTCGCAGTTGGGTACCTTCCATTCCCACCACACAGACTCTGGGCCTCCCCGCAAAATGGCTCCAGAATTAGAGTAATTATGAGATG GTGGGAACCAGAGCAACTCAGGTGCATGATACAAGGAGAGGTTGTCATCTGGGTAGGGCAGAGAGGAGGGCTTGCTCATCTGAACAGGGG TGTATTTCATTCCAGGCCCTCAGTCTTTGGCAATGGCCACCCTGGTGTTGGCATATTGGCCCCACTGTAACTTTTGGGGGCTTCCCGGTC TAGCCACACCCTCGGATGGAAAGACTTGACTGCATAAAGATGTCAGTTCTCCCTGAGTTGATTGATAGGCTTAATGGTCACCCTAAAAAC ACCCACATATGCTTTTCGATGGAACCAGGTAAGTTGACGCTAAAGTTCTTATGGAAAAATACACACGCAATAGCTAGGAAAACACAGGGA AAGAAGAGTTCTGAGCAGGGCCTAGTCTTAGCCAATATTAAAACATACTATGAAGCCTCTGATACTTAAACAGCATGGCGCTGGTACGTA AATAGACCAATGCAGTTAGGTGGCTCTTTCCAAGACTCTGGGGAAAAAAGTAGTAAAAAGCTAAATGCAATCAATCAGCAATTGAAAGCT AAGTGAGAGAGCCAGAGGGCCTCCTTGGTGGTAAAAGAGGGTTGCATTTCTTGCAGCCAGAAGGCAGAGAAAGTGAAGACCAAGTCCAGA ACTGAATCCTAAGAAATGCAGGACTGCAAAGAAATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATTTTTAAAAAGTTTT TATTGAGATACAAGTCAATACCATAAAGCTCTCACCCTTCTAAAGTGTACAATTCAGTGGTGTGAGTATATTCATAAGATTTATACTTGG TGTCTATTCATAAGACTTATATCCAGCATATTCATAACTAGAGCCATATCACAGATGCATTCATCATAATAATTCCAGACATTTTCATCA CCCTAAAAGGAAACCCTGAAACCCATTAGCAGTCATTCCCCATTCCTCCAACCCATTCTCTCCCTAATCCCTAGAAACCACCAATCTGCT >In-frame_ENST00000335509_ENST00000228928_TCGA-CD-8527-01A_TPCN1_chr12_113664769_+_OAS3_chr12_113405223_length(amino acids)=236AA_start in transcript=290_stop in transcript=1000 MRATGEENMAVSLDDDVPLILTLDEGGSAPLAPSNGLGQEELPSKSQLVSGSRPSSQVYVDLIHSYSNAGEYSTCFTELQRDFIISRPTK LKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQGGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQL -------------------------------------------------------------- >In-frame_ENST00000550785_ENST00000228928_TCGA-CD-8527-01A_TPCN1_chr12_113664769_+_OAS3_chr12_113405223_length(transcript)=4348nt_BP=497nt AGGAGAGCTGGCGCAGCTGCCCTGGTGGCAGTGGCTGAAGTGGCGGCGGCTTCGGCGGCTGCGGCGGCTGCAACAGCTTCGGGCTCGGGG TTTTGGCGGCGGCGCCGGCGGGCTAGGCTGCGCGGTGCGGACCCCGGCGCGCGGTCCGGGTTGCTGGGGCGGCGCGTAGATGGAGTCTTG CTACATTGCCCAGGCTGGTCTTGAACTGCTAGGCTCAAGCAGTTCTCCCACCTTGACCTCCCAAAGCGCTGAGATTACAGAAGATGCCTC TAATGGAGGAGTTTCTGAGCAGCACCCCTGGCCCAGTGGCTTTGAAAGGGAGCTCAAACCAGAGACTATTTCAAGCCCTGGATATCATAT CCTGAGGGCCACAGGAGAAGAGAACATGGCTGTGAGTTTGGATGACGACGTGCCGCTCATCCTGACCTTGGATGAGGGTGGCAGTGCCCC ACTGGCTCCCTCCAACGGCCTGGGCCAAGAAGAGCTACCTAGCAAAAGCCAGCTGGTCTCTGGCTCCAGGCCCAGCTCTCAAGTCTACGT CGACCTCATCCACAGCTACAGCAATGCGGGCGAGTACTCCACCTGCTTCACAGAGCTACAACGGGACTTCATCATCTCTCGCCCTACCAA GCTGAAGAGCCTGATCCGGCTGGTGAAGCACTGGTACCAGCAGTGTACCAAGATCTCCAAGGGGAGAGGCTCCCTACCCCCACAGCACGG GCTGGAACTCCTGACTGTGTATGCCTGGGAGCAGGGCGGGAAGGACTCCCAGTTCAACATGGCTGAGGGCTTCCGCACGGTCCTGGAGCT GGTCACCCAGTACCGCCAGCTCTGTATCTACTGGACCATCAACTACAACGCCAAGGACAAGACTGTTGGAGACTTCCTGAAACAGCAGCT TCAGAAGCCCAGGCCTATCATCCTGGATCCGGCTGACCCGACAGGCAACCTGGGCCACAATGCCCGCTGGGACCTGCTGGCCAAGGAAGC TGCAGCCTGCACATCTGCCCTGTGCTGCATGGGACGGAATGGCATCCCCATCCAGCCATGGCCAGTGAAGGCTGCTGTGTGAAGTTGAGA AAATCAGCGGTCCTACTGGATGAAGAGAAGATGGACACCAGCCCTCAGCATGAGGAAATTCAGGGTCCCCTACCAGATGAGAGAGATTGT GTACATGTGTGTGTGAGCACATGTGTGCATGTGTGTGCACACGTGTGCATGTGTGTGTTTTAGTGAATCTGCTCTCCCAGCTCACACACT CCCCTGCCTCCCATGGCTTACACACTAGGATCCAGACTCCATGGTTTGACACCAGCCTGCGTTTGCAGCTTCTCTGTCACTTCCATGACT CTATCCTCATACCACCACTGCTGCTTCCCACCCAGCTGAGAATGCCCCCTCCTCCCTGACTCCTCTCTGCCCATGCAAATTAGCTCACAT CTTTCCTCCTGCTGCAATCCATCCCTTCCTCCCATTGGCCTCTCCTTGCCAAATCTAAATAGTTTATATAGGGATGGCAGAGAGTTCCCA TCTCATCTGTCAGCCACAGTCATTTGGTACTGGCTACCTGGAGCCTTATCTTCTGAAGGGTTTTAAAGAATGGCCAATTAGCTGAGAAGA ATTATCTAATCAATTAGTGATGTCTGCCATGGATGCAGTAGAGGAAAGTGGTGGTACAAGTGCCATGATTGATTAGCAATGTCTGCACTG GATACGGAAAAAAGAAGGTGCTTGCAGGTTTACAGTGTATATGTGGGCTATTGAAGAGCCCTCTGAGCTCGGTTGCTAGCAGGAGAGCAT GCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACCCTCTTGTTGGACACCTAAT TGGATGCCTCTTCATGAGAGGCCTCCTTTTCTTCACCTTTTATGCTGCACTCCTCCCCTAGTTTACACATCTTGATGCTGTGGCTCAGTT TGCCTTCCTGAATTTTTATTGGGTCCCTGTTTTCTCTCCTAACATGCTGAGATTCTGCATCCCCACAGCCTAAACTGAGCCAGTGGCCAA ACAACCGTGCTCAGCCTGTTTCTCTCTGCCCTCTAGAGCAAGGCCCACCAGGTCCATCCAGGAGGCTCTCCTGACCTCAAGTCCAACAAC AGTGTCCACACTAGTCAAGGTTCAGCCCAGAAAACAGAAAGCACTCTAGGAATCTTAGGCAGAAAGGGATTTTATCTAAATCACTGGAAA GGCTGGAGGAGCAGAAGGCAGAGGCCACCACTGGACTATTGGTTTCAATATTAGACCACTGTAGCCGAATCAGAGGCCAGAGAGCAGCCA CTGCTACTGCTAATGCCACCACTACCCCTGCCATCACTGCCCCACATGGACAAAACTGGAGTCGAGACCTAGGTTAGATTCCTGCAACCA CAAACATCCATCAGGGATGGCCAGCTGCCAGAGCTGCGGGAAGACGGATCCCACCTCCCTTTCTTAGCAGAATCTAAATTACAGCCAGAC CTCTGGCTGCAGAGGAGTCTGAGACATGTATGATTGAATGGGTGCCAAGTGCCAGGGGGCGGAGTCCCCAGCAGATGCATCCTGGCCATC TGTTGCGTGGATGAGGGAGTGGGTCTATCTCAGAGGAAGGAACAGGAAACAAAGAAAGGAAGCCACTGAACATCCCTTCTCTGCTCCACA GGAGTGCCTTAGACAGCCTGACTCTCCACAAACCACTGTTAAAACTTACCTGCTAGGAATGCTAGATTGAATGGGATGGGAAGAGCCTTC CCTCATTATTGTCATTCTTGGAGAGAGGTGAGCAACCAAGGGAAGCTCCTCTGATTCACCTAGAACCTGTTCTCTGCCGTCTTTGGCTCA GCCTACAGAGACTAGAGTAGGTGAAGGGACAGAGGACAGGGCTTCTAATACCTGTGCCATATTGACAGCCTCCATCCCTGTCCCCCATCT TGGTGCTGAACCAACGCTAAGGGCACCTTCTTAGACTCACCTCATCGATACTGCCTGGTAATCCAAAGCTAGAACTCTCAGGACCCCAAA CTCCACCTCTTGGATTGGCCCTGGCTGCTGCCACACACATATCCAAGAGCTCAGGGCCAGTTCTGGTGGGCAGCAGAGACCTGCTCTGCC AAGTTGTCCAGCAGCAGAGTGGCCCTGGCCTGGGCATCACAAGCCAGTGATGCTCCTGGGAAGACCAGGTGGCAGGTCGCAGTTGGGTAC CTTCCATTCCCACCACACAGACTCTGGGCCTCCCCGCAAAATGGCTCCAGAATTAGAGTAATTATGAGATGGTGGGAACCAGAGCAACTC AGGTGCATGATACAAGGAGAGGTTGTCATCTGGGTAGGGCAGAGAGGAGGGCTTGCTCATCTGAACAGGGGTGTATTTCATTCCAGGCCC TCAGTCTTTGGCAATGGCCACCCTGGTGTTGGCATATTGGCCCCACTGTAACTTTTGGGGGCTTCCCGGTCTAGCCACACCCTCGGATGG AAAGACTTGACTGCATAAAGATGTCAGTTCTCCCTGAGTTGATTGATAGGCTTAATGGTCACCCTAAAAACACCCACATATGCTTTTCGA TGGAACCAGGTAAGTTGACGCTAAAGTTCTTATGGAAAAATACACACGCAATAGCTAGGAAAACACAGGGAAAGAAGAGTTCTGAGCAGG GCCTAGTCTTAGCCAATATTAAAACATACTATGAAGCCTCTGATACTTAAACAGCATGGCGCTGGTACGTAAATAGACCAATGCAGTTAG GTGGCTCTTTCCAAGACTCTGGGGAAAAAAGTAGTAAAAAGCTAAATGCAATCAATCAGCAATTGAAAGCTAAGTGAGAGAGCCAGAGGG CCTCCTTGGTGGTAAAAGAGGGTTGCATTTCTTGCAGCCAGAAGGCAGAGAAAGTGAAGACCAAGTCCAGAACTGAATCCTAAGAAATGC AGGACTGCAAAGAAATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATTTTTAAAAAGTTTTTATTGAGATACAAGTCAAT ACCATAAAGCTCTCACCCTTCTAAAGTGTACAATTCAGTGGTGTGAGTATATTCATAAGATTTATACTTGGTGTCTATTCATAAGACTTA TATCCAGCATATTCATAACTAGAGCCATATCACAGATGCATTCATCATAATAATTCCAGACATTTTCATCACCCTAAAAGGAAACCCTGA AACCCATTAGCAGTCATTCCCCATTCCTCCAACCCATTCTCTCCCTAATCCCTAGAAACCACCAATCTGCTGTGTATTTCATCTATTGCC >In-frame_ENST00000550785_ENST00000228928_TCGA-CD-8527-01A_TPCN1_chr12_113664769_+_OAS3_chr12_113405223_length(amino acids)=300AA_start in transcript=169_stop in transcript=1071 MESCYIAQAGLELLGSSSSPTLTSQSAEITEDASNGGVSEQHPWPSGFERELKPETISSPGYHILRATGEENMAVSLDDDVPLILTLDEG GSAPLAPSNGLGQEELPSKSQLVSGSRPSSQVYVDLIHSYSNAGEYSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLP PQHGLELLTVYAWEQGGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPIILDPADPTGNLGHNARWDLL -------------------------------------------------------------- >In-frame_ENST00000541517_ENST00000228928_TCGA-CD-8527-01A_TPCN1_chr12_113664769_+_OAS3_chr12_113405223_length(transcript)=4181nt_BP=330nt AGATGGAGTCTTGCTACATTGCCCAGGCTGGTCTTGAACTGCTAGGCTCAAGCAGTTCTCCCACCTTGACCTCCCAAAGCGCTGAGATTA CAGAAGATGCCTCTAATGGAGGAGTTTCTGAGCAGCACCCCTGGCCCAGTGGCTTTGAAAGGGAGCTCAAACCAGAGACTATTTCAAGCC CTGGATATCATATCCTGAGGGCCACAGGAGAAGAGAACATGGCTGTGAGTTTGGATGACGACGTGCCGCTCATCCTGACCTTGGATGAGG GTGGCAGTGCCCCACTGGCTCCCTCCAACGGCCTGGGCCAAGAAGAGCTACCTAGCAAAAGCCAGCTGGTCTCTGGCTCCAGGCCCAGCT CTCAAGTCTACGTCGACCTCATCCACAGCTACAGCAATGCGGGCGAGTACTCCACCTGCTTCACAGAGCTACAACGGGACTTCATCATCT CTCGCCCTACCAAGCTGAAGAGCCTGATCCGGCTGGTGAAGCACTGGTACCAGCAGTGTACCAAGATCTCCAAGGGGAGAGGCTCCCTAC CCCCACAGCACGGGCTGGAACTCCTGACTGTGTATGCCTGGGAGCAGGGCGGGAAGGACTCCCAGTTCAACATGGCTGAGGGCTTCCGCA CGGTCCTGGAGCTGGTCACCCAGTACCGCCAGCTCTGTATCTACTGGACCATCAACTACAACGCCAAGGACAAGACTGTTGGAGACTTCC TGAAACAGCAGCTTCAGAAGCCCAGGCCTATCATCCTGGATCCGGCTGACCCGACAGGCAACCTGGGCCACAATGCCCGCTGGGACCTGC TGGCCAAGGAAGCTGCAGCCTGCACATCTGCCCTGTGCTGCATGGGACGGAATGGCATCCCCATCCAGCCATGGCCAGTGAAGGCTGCTG TGTGAAGTTGAGAAAATCAGCGGTCCTACTGGATGAAGAGAAGATGGACACCAGCCCTCAGCATGAGGAAATTCAGGGTCCCCTACCAGA TGAGAGAGATTGTGTACATGTGTGTGTGAGCACATGTGTGCATGTGTGTGCACACGTGTGCATGTGTGTGTTTTAGTGAATCTGCTCTCC CAGCTCACACACTCCCCTGCCTCCCATGGCTTACACACTAGGATCCAGACTCCATGGTTTGACACCAGCCTGCGTTTGCAGCTTCTCTGT CACTTCCATGACTCTATCCTCATACCACCACTGCTGCTTCCCACCCAGCTGAGAATGCCCCCTCCTCCCTGACTCCTCTCTGCCCATGCA AATTAGCTCACATCTTTCCTCCTGCTGCAATCCATCCCTTCCTCCCATTGGCCTCTCCTTGCCAAATCTAAATAGTTTATATAGGGATGG CAGAGAGTTCCCATCTCATCTGTCAGCCACAGTCATTTGGTACTGGCTACCTGGAGCCTTATCTTCTGAAGGGTTTTAAAGAATGGCCAA TTAGCTGAGAAGAATTATCTAATCAATTAGTGATGTCTGCCATGGATGCAGTAGAGGAAAGTGGTGGTACAAGTGCCATGATTGATTAGC AATGTCTGCACTGGATACGGAAAAAAGAAGGTGCTTGCAGGTTTACAGTGTATATGTGGGCTATTGAAGAGCCCTCTGAGCTCGGTTGCT AGCAGGAGAGCATGCCCATATTGGCTTACTTTGTCTGCCACAGACACAGACAGAGGGAGTTGGGACATGCATGCTATGGGGACCCTCTTG TTGGACACCTAATTGGATGCCTCTTCATGAGAGGCCTCCTTTTCTTCACCTTTTATGCTGCACTCCTCCCCTAGTTTACACATCTTGATG CTGTGGCTCAGTTTGCCTTCCTGAATTTTTATTGGGTCCCTGTTTTCTCTCCTAACATGCTGAGATTCTGCATCCCCACAGCCTAAACTG AGCCAGTGGCCAAACAACCGTGCTCAGCCTGTTTCTCTCTGCCCTCTAGAGCAAGGCCCACCAGGTCCATCCAGGAGGCTCTCCTGACCT CAAGTCCAACAACAGTGTCCACACTAGTCAAGGTTCAGCCCAGAAAACAGAAAGCACTCTAGGAATCTTAGGCAGAAAGGGATTTTATCT AAATCACTGGAAAGGCTGGAGGAGCAGAAGGCAGAGGCCACCACTGGACTATTGGTTTCAATATTAGACCACTGTAGCCGAATCAGAGGC CAGAGAGCAGCCACTGCTACTGCTAATGCCACCACTACCCCTGCCATCACTGCCCCACATGGACAAAACTGGAGTCGAGACCTAGGTTAG ATTCCTGCAACCACAAACATCCATCAGGGATGGCCAGCTGCCAGAGCTGCGGGAAGACGGATCCCACCTCCCTTTCTTAGCAGAATCTAA ATTACAGCCAGACCTCTGGCTGCAGAGGAGTCTGAGACATGTATGATTGAATGGGTGCCAAGTGCCAGGGGGCGGAGTCCCCAGCAGATG CATCCTGGCCATCTGTTGCGTGGATGAGGGAGTGGGTCTATCTCAGAGGAAGGAACAGGAAACAAAGAAAGGAAGCCACTGAACATCCCT TCTCTGCTCCACAGGAGTGCCTTAGACAGCCTGACTCTCCACAAACCACTGTTAAAACTTACCTGCTAGGAATGCTAGATTGAATGGGAT GGGAAGAGCCTTCCCTCATTATTGTCATTCTTGGAGAGAGGTGAGCAACCAAGGGAAGCTCCTCTGATTCACCTAGAACCTGTTCTCTGC CGTCTTTGGCTCAGCCTACAGAGACTAGAGTAGGTGAAGGGACAGAGGACAGGGCTTCTAATACCTGTGCCATATTGACAGCCTCCATCC CTGTCCCCCATCTTGGTGCTGAACCAACGCTAAGGGCACCTTCTTAGACTCACCTCATCGATACTGCCTGGTAATCCAAAGCTAGAACTC TCAGGACCCCAAACTCCACCTCTTGGATTGGCCCTGGCTGCTGCCACACACATATCCAAGAGCTCAGGGCCAGTTCTGGTGGGCAGCAGA GACCTGCTCTGCCAAGTTGTCCAGCAGCAGAGTGGCCCTGGCCTGGGCATCACAAGCCAGTGATGCTCCTGGGAAGACCAGGTGGCAGGT CGCAGTTGGGTACCTTCCATTCCCACCACACAGACTCTGGGCCTCCCCGCAAAATGGCTCCAGAATTAGAGTAATTATGAGATGGTGGGA ACCAGAGCAACTCAGGTGCATGATACAAGGAGAGGTTGTCATCTGGGTAGGGCAGAGAGGAGGGCTTGCTCATCTGAACAGGGGTGTATT TCATTCCAGGCCCTCAGTCTTTGGCAATGGCCACCCTGGTGTTGGCATATTGGCCCCACTGTAACTTTTGGGGGCTTCCCGGTCTAGCCA CACCCTCGGATGGAAAGACTTGACTGCATAAAGATGTCAGTTCTCCCTGAGTTGATTGATAGGCTTAATGGTCACCCTAAAAACACCCAC ATATGCTTTTCGATGGAACCAGGTAAGTTGACGCTAAAGTTCTTATGGAAAAATACACACGCAATAGCTAGGAAAACACAGGGAAAGAAG AGTTCTGAGCAGGGCCTAGTCTTAGCCAATATTAAAACATACTATGAAGCCTCTGATACTTAAACAGCATGGCGCTGGTACGTAAATAGA CCAATGCAGTTAGGTGGCTCTTTCCAAGACTCTGGGGAAAAAAGTAGTAAAAAGCTAAATGCAATCAATCAGCAATTGAAAGCTAAGTGA GAGAGCCAGAGGGCCTCCTTGGTGGTAAAAGAGGGTTGCATTTCTTGCAGCCAGAAGGCAGAGAAAGTGAAGACCAAGTCCAGAACTGAA TCCTAAGAAATGCAGGACTGCAAAGAAATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATTTTTAAAAAGTTTTTATTGA GATACAAGTCAATACCATAAAGCTCTCACCCTTCTAAAGTGTACAATTCAGTGGTGTGAGTATATTCATAAGATTTATACTTGGTGTCTA TTCATAAGACTTATATCCAGCATATTCATAACTAGAGCCATATCACAGATGCATTCATCATAATAATTCCAGACATTTTCATCACCCTAA AAGGAAACCCTGAAACCCATTAGCAGTCATTCCCCATTCCTCCAACCCATTCTCTCCCTAATCCCTAGAAACCACCAATCTGCTGTGTAT >In-frame_ENST00000541517_ENST00000228928_TCGA-CD-8527-01A_TPCN1_chr12_113664769_+_OAS3_chr12_113405223_length(amino acids)=300AA_start in transcript=2_stop in transcript=904 MESCYIAQAGLELLGSSSSPTLTSQSAEITEDASNGGVSEQHPWPSGFERELKPETISSPGYHILRATGEENMAVSLDDDVPLILTLDEG GSAPLAPSNGLGQEELPSKSQLVSGSRPSSQVYVDLIHSYSNAGEYSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLP PQHGLELLTVYAWEQGGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPIILDPADPTGNLGHNARWDLL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for TPCN1-OAS3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | OAS3 | chr12:113664769 | chr12:113405223 | ENST00000228928 | 11 | 16 | 12_57 | 896.3333333333334 | 1088.0 | dsRNA | |
Tgene | OAS3 | chr12:113664769 | chr12:113405223 | ENST00000228928 | 11 | 16 | 186_200 | 896.3333333333334 | 1088.0 | dsRNA |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for TPCN1-OAS3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for TPCN1-OAS3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TPCN1 | C0028960 | Oligospermia | 1 | CTD_human |
Tgene | OAS3 | C0021400 | Influenza | 1 | CTD_human |