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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:BCAS3-BRIP1 (FusionGDB2 ID:9270)

Fusion Gene Summary for BCAS3-BRIP1

check button Fusion gene summary
Fusion gene informationFusion gene name: BCAS3-BRIP1
Fusion gene ID: 9270
HgeneTgene
Gene symbol

BCAS3

BRIP1

Gene ID

54828

83990

Gene nameBCAS3 microtubule associated cell migration factorBRCA1 interacting protein C-terminal helicase 1
SynonymsGAOB1|MAABBACH1|FANCJ|OF
Cytomap

17q23.2

17q23.2

Type of geneprotein-codingprotein-coding
Descriptionbreast carcinoma-amplified sequence 3BCAS4/BCAS3 fusionRudhirabreast carcinoma amplified sequence 4/3 fusion proteinmetastasis associated antigen of breast cancerprotein Maab1Fanconi anemia group J proteinATP-dependent RNA helicase BRIP1BRCA1-associated C-terminal helicase 1BRCA1-binding helicase-like protein BACH1BRCA1/BRCA2-associated helicase 1
Modification date2020031320200315
UniProtAcc.

Q9BX63

Ensembl transtripts involved in fusion geneENST00000589222, ENST00000407086, 
ENST00000390652, ENST00000408905, 
ENST00000588462, ENST00000585744, 
ENST00000588874, ENST00000585812, 
ENST00000259008, ENST00000577598, 
ENST00000583837, 
Fusion gene scores* DoF score53 X 35 X 17=3153512 X 15 X 7=1260
# samples 6113
** MAII scorelog2(61/31535*10)=-5.69200088030826
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(13/1260*10)=-3.27684020535882
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: BCAS3 [Title/Abstract] AND BRIP1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointBCAS3(59024713)-BRIP1(59878835), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneBCAS3

GO:0043085

positive regulation of catalytic activity

17505058

HgeneBCAS3

GO:0045944

positive regulation of transcription by RNA polymerase II

17505058

HgeneBCAS3

GO:0071391

cellular response to estrogen stimulus

17505058

TgeneBRIP1

GO:0006357

regulation of transcription by RNA polymerase II

14504288


check buttonFusion gene breakpoints across BCAS3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across BRIP1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-C8-A12P-01ABCAS3chr17

59024713

+BRIP1chr17

59878835

-
ChimerDB4BRCATCGA-C8-A12P-01ABCAS3chr17

59024713

-BRIP1chr17

59878835

-


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Fusion Gene ORF analysis for BCAS3-BRIP1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000589222ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000589222ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000589222ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000407086ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000407086ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000407086ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000390652ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000390652ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000390652ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000408905ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000408905ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000408905ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000588462ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000588462ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000588462ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000585744ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000585744ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000585744ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000588874ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
In-frameENST00000588874ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
5CDS-intronENST00000588874ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-
intron-3CDSENST00000585812ENST00000259008BCAS3chr17

59024713

+BRIP1chr17

59878835

-
intron-3CDSENST00000585812ENST00000577598BCAS3chr17

59024713

+BRIP1chr17

59878835

-
intron-intronENST00000585812ENST00000583837BCAS3chr17

59024713

+BRIP1chr17

59878835

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000589222BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-615112896841201350
ENST00000589222BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-434012896833551095
ENST00000407086BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-613112694841001350
ENST00000407086BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-432012694833351095
ENST00000390652BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-611412523140831350
ENST00000390652BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-430312523133181095
ENST00000408905BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-60831221040521350
ENST00000408905BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-42721221032871095
ENST00000588462BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-60831221040521350
ENST00000588462BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-42721221032871095
ENST00000585744BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-54996371334681151
ENST00000585744BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-3688637132703896
ENST00000588874BCAS3chr1759024713+ENST00000259008BRIP1chr1759878835-558472218835531121
ENST00000588874BCAS3chr1759024713+ENST00000577598BRIP1chr1759878835-37737221882788866

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000589222ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-8.36E-050.99991643
ENST00000589222ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.0001199870.99987996
ENST00000407086ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-8.13E-050.9999187
ENST00000407086ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.000116860.9998832
ENST00000390652ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-7.86E-050.9999213
ENST00000390652ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.0001120850.99988794
ENST00000408905ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-7.72E-050.99992275
ENST00000408905ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.0001112120.9998888
ENST00000588462ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-7.72E-050.99992275
ENST00000588462ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.0001112120.9998888
ENST00000585744ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-9.72E-050.9999027
ENST00000585744ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.0004415330.9995585
ENST00000588874ENST00000259008BCAS3chr1759024713+BRIP1chr1759878835-9.98E-050.9999002
ENST00000588874ENST00000577598BCAS3chr1759024713+BRIP1chr1759878835-0.0004097350.9995902

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Fusion Genomic Features for BCAS3-BRIP1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for BCAS3-BRIP1


check button Go to

FGviewer for the breakpoints of chr17:59024713-chr17:59878835

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.BRIP1

Q9BX63

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: DNA-dependent ATPase and 5' to 3' DNA helicase required for the maintenance of chromosomal stability. Acts late in the Fanconi anemia pathway, after FANCD2 ubiquitination. Involved in the repair of DNA double-strand breaks by homologous recombination in a manner that depends on its association with BRCA1. {ECO:0000269|PubMed:11301010, ECO:0000269|PubMed:14983014, ECO:0000269|PubMed:16116421, ECO:0000269|PubMed:16153896}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneBRIP1chr17:59024713chr17:59878835ENST00000259008620393_396306.01250.0MotifNote=DEAH box

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneBRIP1chr17:59024713chr17:59878835ENST0000025900862011_442306.01250.0DomainHelicase ATP-binding
TgeneBRIP1chr17:59024713chr17:59878835ENST00000259008620158_175306.01250.0MotifNuclear localization signal
TgeneBRIP1chr17:59024713chr17:59878835ENST00000259008620185_192306.01250.0Nucleotide bindingATP


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Fusion Gene Sequence for BCAS3-BRIP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000589222_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=6151nt_BP=1289nt
CTCGGGGAGACTCCAAACAGTGAGCCTAGAGCTGGAGACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTACAG
ATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCTACATGGAAAGTGTTGTGA
CTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATG
CAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACA
GTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAA
TCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTT
CTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTT
ATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCT
TTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGA
TTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAA
GTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTA
ATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATT
CTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCA
CAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATA
CTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGA
CTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAG
AACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAG
AACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGT
TTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTA
ATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTT
TACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAA
TTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATC
TTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACA
AAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAG
CTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAAC
TTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGG
GTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTG
TGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATC
TGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCA
AATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCC
GTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAAT
TGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAA
ATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGC
AGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAA
AGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAA
GTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCAC
CTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCA
GATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATAC
CGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTT
TGCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCAT
TAAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTC
TAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTT
ATGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAG
CTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATG
GAATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTC
ATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGC
TAAGTAAAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTA
TTTTATGTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAA
TGCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAG
GTGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCT
CGTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAA
TTCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACG
TAAATATTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAG
TCATATTTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAAC
TGCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAA
ACCAAACATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCA
TCATTGTGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGA
AGGTAATTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGA
TAGAAAACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTG
TGAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCC
AAAAATACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTAT
GAGCTATCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATC
ATTATATAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTA
GTTCAAAGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGAT
CATTGAGCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATT
CTTAAACCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCA
CTGATTTGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATA
CAAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAA

>In-frame_ENST00000589222_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1350AA_start in transcript=68_stop in transcript=4120
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGK
AEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQ
SETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLA
NNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDDIDGNVKTTWINELELGKTHEIEIKNFKPSPSKNKGMFPGFK

--------------------------------------------------------------
>In-frame_ENST00000589222_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=4340nt_BP=1289nt
CTCGGGGAGACTCCAAACAGTGAGCCTAGAGCTGGAGACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTACAG
ATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCTACATGGAAAGTGTTGTGA
CTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATG
CAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACA
GTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAA
TCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTT
CTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTT
ATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCT
TTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGA
TTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAA
GTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTA
ATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATT
CTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCA
CAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATA
CTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGA
CTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAG
AACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAG
AACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGT
TTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTA
ATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTT
TACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAA
TTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATC
TTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACA
AAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAG
CTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAAC
TTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGG
GTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTG
TGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATC
TGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCA
AATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCC
GTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAAT
TGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAA
ATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGC
AGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAA
AGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAA
GTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCAC
CTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTA
GTGAAATGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATG
GTGTACTGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGT
GATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGT
CAAAATTATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTAT
GTAGATACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATG
AAAAATAATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTT
TTTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCAC
TAGAACAGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGC
CAAACTCTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAG
ACCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCT
ACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCGCCATTGCACTCCAGCCTGGGCA

>In-frame_ENST00000589222_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1095AA_start in transcript=68_stop in transcript=3355
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKSMKSSSHLPLI

--------------------------------------------------------------
>In-frame_ENST00000407086_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=6131nt_BP=1269nt
TGAGCCTAGAGCTGGAGACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGT
CGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTG
CCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCA
AGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGG
AGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTT
GGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTAC
TGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAA
CGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCA
TGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGT
GGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGG
AAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTG
GTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTG
GCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCAT
GACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACT
GAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAA
GCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGAC
ATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGAT
GAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGAT
AGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCT
GAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACC
ACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCA
AGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGA
TTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTA
CCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATT
AATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATC
CAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACC
TTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGT
TTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTC
ATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGAT
GGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGA
ATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGC
CGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATT
CTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACC
TTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAG
GACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAAT
TTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATC
TCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTC
AACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTC
GGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGT
GAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTT
ACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAA
CAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGAT
GAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATT
AGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAA
AGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAAC
TTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCA
TGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAA
ATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGC
TCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAG
CTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGC
CTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCT
CAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGG
TTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTT
TACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTA
AGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAA
ATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACT
AGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTT
AGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAA
TTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGT
GTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCT
CTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGT
ATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTG
CTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTG
ACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAA
ATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGAT
AGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATT
GGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGA
GAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAAATAAAGCATATTATTTCATT

>In-frame_ENST00000407086_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1350AA_start in transcript=48_stop in transcript=4100
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGK
AEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQ
SETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLA
NNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDDIDGNVKTTWINELELGKTHEIEIKNFKPSPSKNKGMFPGFK

--------------------------------------------------------------
>In-frame_ENST00000407086_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=4320nt_BP=1269nt
TGAGCCTAGAGCTGGAGACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGT
CGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTG
CCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCA
AGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGG
AGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTT
GGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTAC
TGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAA
CGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCA
TGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGT
GGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGG
AAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTG
GTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTG
GCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCAT
GACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACT
GAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAA
GCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGAC
ATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGAT
GAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGAT
AGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCT
GAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACC
ACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCA
AGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGA
TTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTA
CCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATT
AATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATC
CAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACC
TTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGT
TTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTC
ATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGAT
GGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGA
ATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGC
CGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATT
CTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACC
TTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAG
GACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAAT
TTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATC
TCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGG
GTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAA
ACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTG
TCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAG
CATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAAC
TACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATA
TTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATG
AAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTA
GTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCAT
TGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGT
GAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGG
AGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCGCCATTGCACTCCAGCCTGGGCAACAAAAGCAAAACTCGGACT

>In-frame_ENST00000407086_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1095AA_start in transcript=48_stop in transcript=3335
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKSMKSSSHLPLI

--------------------------------------------------------------
>In-frame_ENST00000390652_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=6114nt_BP=1252nt
ACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGT
TGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGG
AACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCA
TGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGG
TGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGA
TAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTA
TTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGT
CTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACAT
GAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGA
CAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCT
GACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCAC
AGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCA
TGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCA
AATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATC
CTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGA
ACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTA
CAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGA
GGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAA
TATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAG
AGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCAT
TTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTAT
TAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAA
AATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACG
TTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGAC
CATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCA
TATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAAC
ATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAA
GTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGG
AGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGC
AGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGT
GAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAAT
TCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTT
TAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGA
ATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACT
TGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGC
AAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAA
TGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAACAAACAAAGAG
AGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAG
TGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCTCAAATCTGAC
AGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAAAAAATCATTC
TGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAG
AGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAAAAAATGACCT
AGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGT
AGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAATTGATGACAT
TGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTC
CAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATGCTTATGTTAAACTCT
GTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAATGTTATTATTCTTGAG
TTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACC
TCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTT
AGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGG
ATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTA
GCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTTCTCTTCATCCATTTG
TTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTACCTCAAATCAGTCCA
AGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGT
AGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAATTGACGTAAAGATATA
AAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAGATCCTGCTTAGTATT
ATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAGAAAGGGTGAAACAAT
TTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATTTGATAAGCAAACCCA
CATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGC
TATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCTTTTTAAGAAACATCT
GTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTATGGTCTATTATTTTCA
AGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCTTCCATTTTGAGACAT
TTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGACAAGTTACCAGTTAAA
GAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAATACTCGATTAGAAGGT
AATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAGTAGGGTAGTGAAACG
AATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGGCAATCACCACACCCT
TCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATG

>In-frame_ENST00000390652_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1350AA_start in transcript=31_stop in transcript=4083
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGK
AEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQ
SETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLA
NNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDDIDGNVKTTWINELELGKTHEIEIKNFKPSPSKNKGMFPGFK

--------------------------------------------------------------
>In-frame_ENST00000390652_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=4303nt_BP=1252nt
ACTAGCGTTAACCGGCGGGGCGGCCGGTTTTATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGT
TGTGGTTCGCCCCCAGGCTGTCACAGAGCAGTCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGG
AACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCA
TGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGG
TGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGA
TAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTA
TTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGT
CTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACAT
GAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGA
CAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCT
GACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCAC
AGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCA
TGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCA
AATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATC
CTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGA
ACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTA
CAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGA
GGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAA
TATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAG
AGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCAT
TTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTAT
TAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAA
AATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACG
TTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGAC
CATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCA
TATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAAC
ATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAA
GTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGG
AGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGC
AGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGT
GAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAAT
TCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTT
TAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGA
ATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACT
TGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGC
AAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAG
TATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGTATAGATTAATTCCTT
AAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAACTTTTGTCAGGAGACC
AGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAA
TAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCATTGTAAAGTACCATG
TAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTACTTTTCCTATATAGA
TAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATTTTGAAATAATCATCT
GTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCA
TTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGTCGCAACAGATACATT
ATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTGGATATAATTTCAGTT
GTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACT
AAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGG

>In-frame_ENST00000390652_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1095AA_start in transcript=31_stop in transcript=3318
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKSMKSSSHLPLI

--------------------------------------------------------------
>In-frame_ENST00000408905_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=6083nt_BP=1221nt
ATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAG
TCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATA
GTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCT
TTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACAT
GGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGT
GTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCC
ATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGC
TGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTT
GCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATT
AGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAA
GATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGC
CAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAAT
ACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAA
TGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATT
AGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCC
TGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAA
AGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGT
GTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGA
GCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGT
GGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAA
AAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGA
CTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACA
AATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTA
AACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCA
ATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGT
ACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTT
TTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTC
TCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTG
CAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTG
GATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAA
TACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTT
GGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGA
CTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAA
AAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCA
CCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCT
AAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAA
GCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGA
CAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAG
AAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAA
TCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTG
GATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCT
ATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCT
AACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGAT
TGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAAT
GAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAG
TAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAG
TGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCT
TGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCC
TTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAG
GCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCA
TTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATC
CTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCA
GTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGA
AAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACA
TTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTA
TTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAAT
AAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGC
TTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCT
TAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGA
GGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGA
GTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTAC
ATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATT
TGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTA
TTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACA
ATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTG
GGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAG
CGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTG

>In-frame_ENST00000408905_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1350AA_start in transcript=0_stop in transcript=4052
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGK
AEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQ
SETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLA
NNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDDIDGNVKTTWINELELGKTHEIEIKNFKPSPSKNKGMFPGFK

--------------------------------------------------------------
>In-frame_ENST00000408905_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=4272nt_BP=1221nt
ATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAG
TCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATA
GTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCT
TTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACAT
GGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGT
GTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCC
ATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGC
TGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTT
GCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATT
AGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAA
GATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGC
CAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAAT
ACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAA
TGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATT
AGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCC
TGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAA
AGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGT
GTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGA
GCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGT
GGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAA
AAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGA
CTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACA
AATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTA
AACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCA
ATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGT
ACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTT
TTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTC
TCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTG
CAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTG
GATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAA
TACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTT
GGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGA
CTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAA
AAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCA
CCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCT
AAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATA
GAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTAT
CATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGG
CTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCC
CTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATAT
AAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGA
GAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGC
CAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGT
TGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTG
GCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGAT
CATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAG
GCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCG

>In-frame_ENST00000408905_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1095AA_start in transcript=0_stop in transcript=3287
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKSMKSSSHLPLI

--------------------------------------------------------------
>In-frame_ENST00000588462_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=6083nt_BP=1221nt
ATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAG
TCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATA
GTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCT
TTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACAT
GGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGT
GTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCC
ATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGC
TGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTT
GCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATT
AGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAA
GATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGC
CAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAAT
ACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAA
TGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATT
AGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCC
TGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAA
AGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGT
GTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGA
GCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGT
GGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAA
AAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGA
CTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACA
AATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTA
AACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCA
ATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGT
ACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTT
TTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTC
TCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTG
CAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTG
GATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAA
TACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTT
GGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGA
CTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAA
AAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCA
CCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCT
AAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAA
GCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGA
CAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAG
AAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAA
TCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTG
GATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCT
ATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCT
AACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGAT
TGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAAT
GAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAG
TAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAG
TGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCT
TGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCC
TTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAG
GCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCA
TTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATC
CTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCA
GTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGA
AAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACA
TTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTA
TTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAAT
AAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGC
TTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCT
TAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGA
GGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGA
GTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTAC
ATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATT
TGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTA
TTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACA
ATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTG
GGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAG
CGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTG

>In-frame_ENST00000588462_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1350AA_start in transcript=0_stop in transcript=4052
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGK
AEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQ
SETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLA
NNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDDIDGNVKTTWINELELGKTHEIEIKNFKPSPSKNKGMFPGFK

--------------------------------------------------------------
>In-frame_ENST00000588462_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=4272nt_BP=1221nt
ATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCACAGAGCAG
TCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATA
GTCTGGGTCAGATTTGAAAATGCAGATTTAAATGATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCT
TTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACAT
GGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGT
GTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCC
ATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGC
TGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTT
GCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATT
AGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAA
GATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGC
CAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAAT
ACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAA
TGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATT
AGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCC
TGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAA
AGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGT
GTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGA
GCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGT
GGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAA
AAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGA
CTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACA
AATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTA
AACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCA
ATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGT
ACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTT
TTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTC
TCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTG
CAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTG
GATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAA
TACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTT
GGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGA
CTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAA
AAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCA
CCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCT
AAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATA
GAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTAT
CATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGG
CTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCC
CTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATAT
AAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGA
GAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGC
CAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGT
TGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTG
GCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGAT
CATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAG
GCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCG

>In-frame_ENST00000588462_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1095AA_start in transcript=0_stop in transcript=3287
MNEAMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGTPLTEEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPP
LLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKS
IQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVI
SAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN
TSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKA
CPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLR
AVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKG
LFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSP
MKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWL
STGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQ
YNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQ
KVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKSMKSSSHLPLI

--------------------------------------------------------------
>In-frame_ENST00000585744_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=5499nt_BP=637nt
GCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTGGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGGCTGCTATCCATG
TCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGG
TGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAA
AGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGT
CCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGC
CCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGA
CTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGA
AGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGC
CTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACAT
CATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGA
AGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAG
TATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGA
ATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCAC
TGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAG
AGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATT
TGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACC
AAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAA
TGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCA
GCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTT
CCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTT
CTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCAT
TGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGG
AGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAAT
TCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCG
TCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCT
AGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTT
TGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGA
CAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTT
TGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTC
CAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAA
CAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGG
GTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGA
ATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTAC
TAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACA
GTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGA
AGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAG
AACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAG
TAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTT
TAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATG
CTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAAT
GTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTC
ACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCT
AGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCT
CCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCA
AATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTT
CTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTA
CCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAG
AGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAAT
TGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAG
ATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAG
AAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATT
TGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGT
TTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCT
TTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTAT
GGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCT
TCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGAC
AAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAAT
ACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAG
TAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGG
CAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGA
ATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAAATAAAGCATATTATTTCATTTA

>In-frame_ENST00000585744_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1151AA_start in transcript=13_stop in transcript=3468
MISDCCAGNQRDSVGVGPSEPGCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQ
LTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVF
QILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCP
YNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVE
RDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDY
KIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEAN
HIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQ
GGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYE
IQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNEST
LEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQTK
RVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKNH
SEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIKE

--------------------------------------------------------------
>In-frame_ENST00000585744_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=3688nt_BP=637nt
GCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTGGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGGCTGCTATCCATG
TCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGG
TGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAA
AGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGT
CCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGC
CCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGA
CTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGA
AGCCAAAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGC
CTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACAT
CATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGA
AGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAG
TATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGA
ATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCAC
TGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAG
AGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATT
TGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACC
AAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAA
TGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCA
GCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTT
CCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTT
CTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCAT
TGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGG
AGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAAT
TCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCG
TCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCT
AGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTT
TGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGA
CAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTT
TGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTC
CAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGT
ATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAAC
TTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTC
CTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCA
TTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTA
CTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATT
TTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAA
ATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGT
CGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTG
GATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGA
AACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAG

>In-frame_ENST00000585744_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=896AA_start in transcript=13_stop in transcript=2703
MISDCCAGNQRDSVGVGPSEPGCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQ
LTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVF
QILTHPWSSSQCAVHHLYTLHRGETEAKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCP
YNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVE
RDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDY
KIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEAN
HIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQ
GGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYE
IQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNEST

--------------------------------------------------------------
>In-frame_ENST00000588874_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=5584nt_BP=722nt
GCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTGGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGGTGTGGGATATAG
TCTCGTGGTGCGCCGTTTTTTAAGCCGGTCTGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAGGCTGCTATCCATGTCCAG
GGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAG
CCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGG
TGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAG
GCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACT
TCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTC
ATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCA
AAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGG
ATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATAT
TTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTC
ATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGG
TCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATC
TTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTA
CTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAG
TACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAG
ATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAA
ATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCA
AAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGG
AGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGA
ATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGC
CATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAG
AACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTC
TCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTT
TTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGT
GGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGG
ATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAA
GTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATG
AGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGG
AAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAA
AGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAAC
AAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCAT
CAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCT
CAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAA
AAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCA
CTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAA
AAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTA
TAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAA
TTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAAC
CATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATGCTTAT
GTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAATGTTAT
TATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTCACTGC
AACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCTAGTTT
TTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCTCCCTA
AGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCAAATAA
GTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTTCTCTT
CATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTACCTCA
AATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAGAGAAA
TTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAATTGACG
TAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAGATCCT
GCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAGAAAGG
GTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATTTGATA
AGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGTTTTTG
TGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCTTTTTA
AGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTATGGTCT
ATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCTTCCAT
TTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGACAAGTT
ACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAATACTCG
ATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAGTAGGG
TAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGGCAATC
ACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGAATCTA
TAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAAATAAAGCATATTATTTCATTTAAAAAG

>In-frame_ENST00000588874_ENST00000259008_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=1121AA_start in transcript=188_stop in transcript=3553
MNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGII
TVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGK
SCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNI
EDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFP
ILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKK
RSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTE
TFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLV
AVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDR
FRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDE
AKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSEN
SASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSN
RDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDD

--------------------------------------------------------------
>In-frame_ENST00000588874_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(transcript)=3773nt_BP=722nt
GCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTGGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGGTGTGGGATATAG
TCTCGTGGTGCGCCGTTTTTTAAGCCGGTCTGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAGGCTGCTATCCATGTCCAG
GGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAG
CCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGG
TGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAG
GCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACT
TCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTC
ATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCA
AAGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGG
ATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATAT
TTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTC
ATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGG
TCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATC
TTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTA
CTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAG
TACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAG
ATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAA
ATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCA
AAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGG
AGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGA
ATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGC
CATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAG
AACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTC
TCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTT
TTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGT
GGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGG
ATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAA
GTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATG
AGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGG
AAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAA
AGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGTATAGA
TTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAACTTTTG
TCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTCCTTTT
TGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCATTGTA
AAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTACTTTT
CCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATTTTGAA
ATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAAATGTA
GTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGTCGCAA
CAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTGGATAT
AATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGAAACAC
CGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTG

>In-frame_ENST00000588874_ENST00000577598_TCGA-C8-A12P-01A_BCAS3_chr17_59024713_+_BRIP1_chr17_59878835_length(amino acids)=866AA_start in transcript=188_stop in transcript=2788
MNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGII
TVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKGK
SCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNI
EDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFP
ILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKK
RSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTE
TFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLV
AVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDR
FRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDE

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Fusion Gene PPI Analysis for BCAS3-BRIP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
TgeneBRIP1chr17:59024713chr17:59878835ENST00000259008620888_1063306.01250.0BRCA1


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for BCAS3-BRIP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for BCAS3-BRIP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneBRIP1C1836860FANCONI ANEMIA, COMPLEMENTATION GROUP J9CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneBRIP1C0006142Malignant neoplasm of breast4CGI;CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneBRIP1C0015625Fanconi Anemia3CTD_human;GENOMICS_ENGLAND
TgeneBRIP1C0023418leukemia1CGI;GENOMICS_ENGLAND
TgeneBRIP1C0023465Acute monocytic leukemia1GENOMICS_ENGLAND
TgeneBRIP1C0023467Leukemia, Myelocytic, Acute1CGI;GENOMICS_ENGLAND
TgeneBRIP1C0030312Pancytopenia1GENOMICS_ENGLAND
TgeneBRIP1C0265219Miller Dieker syndrome1GENOMICS_ENGLAND
TgeneBRIP1C0496956Neoplasm of uncertain or unknown behavior of breast1CGI;GENOMICS_ENGLAND
TgeneBRIP1C0677776Hereditary Breast and Ovarian Cancer Syndrome1ORPHANET
TgeneBRIP1C0919267ovarian neoplasm1CTD_human
TgeneBRIP1C1140680Malignant neoplasm of ovary1CTD_human;UNIPROT
TgeneBRIP1C1855710Bone marrow hypocellularity1GENOMICS_ENGLAND
TgeneBRIP1C3463824MYELODYSPLASTIC SYNDROME1GENOMICS_ENGLAND
TgeneBRIP1C4228778Abnormality of radial ray1GENOMICS_ENGLAND