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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:BCKDHB-ME1 (FusionGDB2 ID:9383) |
Fusion Gene Summary for BCKDHB-ME1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BCKDHB-ME1 | Fusion gene ID: 9383 | Hgene | Tgene | Gene symbol | BCKDHB | ME1 | Gene ID | 594 | 57717 |
| Gene name | branched chain keto acid dehydrogenase E1 subunit beta | protocadherin beta 16 | |
| Synonyms | BCKDE1B|BCKDH E1-beta|E1B | ME1|PCDH-BETA16|PCDH3X|PCDHB8a | |
| Cytomap | 6q14.1 | 5q31.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | 2-oxoisovalerate dehydrogenase subunit beta, mitochondrialE1b-beta subunit of the branched-chain complexbranched chain alpha-ketoacid dehydrogenase E1-beta subunitbranched chain keto acid dehydrogenase E1, beta polypeptidebranched-chain alpha-keto aci | protocadherin beta-16cadherin ME1protocadherin beta 8aprotocadherin-3x | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | P48163 | |
| Ensembl transtripts involved in fusion gene | ENST00000369760, ENST00000356489, ENST00000320393, ENST00000545529, ENST00000486968, | ENST00000369705, ENST00000541327, ENST00000543031, | |
| Fusion gene scores | * DoF score | 8 X 5 X 4=160 | 3 X 2 X 3=18 |
| # samples | 8 | 3 | |
| ** MAII score | log2(8/160*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: BCKDHB [Title/Abstract] AND ME1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | BCKDHB(80912929)-ME1(84117620), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across BCKDHB (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across ME1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | PRAD | TCGA-EJ-7789-01A | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| ChimerDB4 | PRAD | TCGA-EJ-7789-01A | BCKDHB | chr6 | 80912929 | - | ME1 | chr6 | 84117620 | - |
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Fusion Gene ORF analysis for BCKDHB-ME1 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000369760 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| intron-intron | ENST00000369760 | ENST00000541327 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| intron-intron | ENST00000369760 | ENST00000543031 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| In-frame | ENST00000356489 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 5CDS-intron | ENST00000356489 | ENST00000541327 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 5CDS-intron | ENST00000356489 | ENST00000543031 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| In-frame | ENST00000320393 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 5CDS-intron | ENST00000320393 | ENST00000541327 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 5CDS-intron | ENST00000320393 | ENST00000543031 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 3UTR-3CDS | ENST00000545529 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 3UTR-intron | ENST00000545529 | ENST00000541327 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| 3UTR-intron | ENST00000545529 | ENST00000543031 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| intron-3CDS | ENST00000486968 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| intron-intron | ENST00000486968 | ENST00000541327 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| intron-intron | ENST00000486968 | ENST00000543031 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000356489 | BCKDHB | chr6 | 80912929 | + | ENST00000369705 | ME1 | chr6 | 84117620 | - | 4174 | 998 | 47 | 2638 | 863 |
| ENST00000320393 | BCKDHB | chr6 | 80912929 | + | ENST00000369705 | ME1 | chr6 | 84117620 | - | 4174 | 998 | 47 | 2638 | 863 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000356489 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - | 0.000457939 | 0.9995421 |
| ENST00000320393 | ENST00000369705 | BCKDHB | chr6 | 80912929 | + | ME1 | chr6 | 84117620 | - | 0.000457939 | 0.9995421 |
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Fusion Genomic Features for BCKDHB-ME1 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for BCKDHB-ME1 |
| Go to FGviewer for the breakpoints of chr6:80912929-chr6:84117620 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | ME1 |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | ME1 | chr6:80912929 | chr6:84117620 | ENST00000369705 | 0 | 14 | 301_318 | 26.0 | 573.0 | Nucleotide binding | NADP |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for BCKDHB-ME1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000356489_ENST00000369705_TCGA-EJ-7789-01A_BCKDHB_chr6_80912929_+_ME1_chr6_84117620_length(transcript)=4174nt_BP=998nt AGGCGGCGTGCGGCTGCATAGCCTGAGAATCCCGGTGGTGAGCGGGGATGGCGGTTGTAGCGGCGGCTGCCGGCTGGCTACTCAGGCTCA GGGCGGCAGGGGCTGAGGGGCACTGGCGTCGGCTTCCTGGCGCGGGGCTGGCGCGGGGCTTTTTGCACCCCGCCGCGACTGTCGAGGATG CGGCCCAGAGGCGGCAGGTGGCTCATTTTACTTTCCAGCCAGATCCGGAGCCCCGGGAGTACGGGCAAACTCAGAAAATGAATCTTTTCC AGTCTGTAACAAGTGCCTTGGATAACTCATTGGCCAAAGATCCTACTGCAGTAATATTTGGTGAAGATGTTGCCTTTGGTGGAGTCTTTA GATGCACTGTTGGCTTGCGAGACAAATATGGAAAAGATAGAGTTTTTAATACCCCATTGTGTGAACAAGGAATTGTTGGATTTGGAATCG GAATTGCGGTCACTGGAGCTACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCATTTGATCAGATTGTTAATGAAGCTG CCAAGTATCGCTATCGCTCTGGGGATCTTTTTAACTGTGGAAGCCTCACTATCCGGTCCCCTTGGGGCTGTGTTGGTCATGGGGCTCTCT ATCATTCTCAGAGTCCTGAAGCATTTTTTGCCCATTGCCCAGGAATCAAGGTGGTTATACCCAGAAGCCCTTTCCAGGCCAAAGGACTTC TTTTGTCATGCATAGAGGATAAAAATCCTTGTATATTTTTTGAACCTAAAATACTTTACAGGGCAGCAGCGGAAGAAGTCCCTATAGAAC CATACAACATCCCACTGTCCCAGGCCGAAGTCATACAGGAAGGGAGTGATGTTACTCTAGTTGCCTGGGGCACTCAGGTTCATGTGATCC GAGAGGTAGCTTCCATGGCAAAAGAAAAGCTTGGAGTGTCTTGTGAAGTCATTGATCTGAGGACTATAATACCTTGGGATGTGGACACAA TTTGTAAGGACTTGGCCTTTACCCTGGAAGAGAGACAGCAATTGAACATTCATGGATTGTTGCCACCTTCCTTCAACAGTCAGGAGATCC AGGTTCTTAGAGTAGTAAAAAATTTCGAGCATCTGAACTCTGACTTTGACAGGTATCTTCTCTTAATGGATCTCCAAGATAGAAATGAAA AACTCTTTTATAGAGTGCTGACATCTGACATTGAGAAATTCATGCCTATTGTTTATACTCCCACTGTGGGTCTGGCTTGCCAACAATATA GTTTGGTGTTTCGGAAGCCAAGAGGTCTCTTTATTACTATCCACGATCGAGGGCATATTGCTTCAGTTCTCAATGCATGGCCAGAAGATG TCATCAAGGCCATTGTGGTGACTGATGGAGAGCGTATTCTTGGCTTGGGAGACCTTGGCTGTAATGGAATGGGCATCCCTGTGGGTAAAT TGGCTCTATATACAGCTTGCGGAGGGATGAATCCTCAAGAATGTCTGCCTGTCATTCTGGATGTGGGAACCGAAAATGAGGAGTTACTTA AAGATCCACTCTACATTGGACTACGGCAGAGAAGAGTAAGAGGTTCTGAATATGATGATTTTTTGGACGAATTCATGGAGGCAGTTTCTT CCAAGTATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATGTGAATGCATTTCGTCTCCTGAACAAGTATCGAAACCAGTATT GCACATTCAATGATGATATTCAAGGAACAGCATCTGTTGCAGTTGCAGGTCTCCTTGCAGCTCTTCGAATAACCAAGAACAAACTGTCTG ATCAAACAATACTATTCCAAGGAGCTGGAGAGGCTGCCCTAGGGATTGCACACCTGATTGTGATGGCCTTGGAAAAAGAAGGTTTACCAA AAGAGAAAGCCATCAAAAAGATATGGCTGGTTGATTCAAAAGGATTAATAGTTAAGGGACGTGCTTCCTTAACACAAGAGAAAGAGAAGT TTGCCCATGAACATGAAGAAATGAAGAACCTAGAAGCCATTGTTCAAGAAATAAAACCAACTGCCCTCATAGGAGTTGCTGCAATTGGTG GTGCATTCTCAGAACAAATTCTCAAAGATATGGCTGCCTTCAATGAACGGCCTATTATTTTTGCTTTGAGTAATCCAACTAGCAAAGCAG AATGTTCTGCAGAGCAGTGCTACAAAATAACCAAGGGACGTGCAATTTTTGCCAGTGGCAGTCCTTTTGATCCAGTCACTCTTCCAAATG GACAGACCCTATATCCTGGCCAAGGCAACAATTCCTATGTGTTCCCTGGAGTTGCTCTTGGTGTTGTGGCGTGTGGATTGAGGCAGATCA CAGATAATATTTTCCTCACTACTGCTGAGGTTATAGCTCAGCAAGTGTCAGATAAACACTTGGAAGAGGGTCGGCTTTATCCTCCTTTGA ATACCATTAGAGATGTTTCTCTGAAAATTGCAGAAAAGATTGTGAAAGATGCATACCAAGAAAAGACAGCCACAGTTTATCCTGAACCGC AAAACAAAGAAGCATTTGTCCGCTCCCAGATGTATAGTACTGATTATGACCAGATTCTACCTGATTGTTATTCTTGGCCTGAAGAGGTGC AGAAAATACAGACCAAAGTTGACCAGTAGGATAATAGCAAACATTTCTAACTCTATTAATGAGGTCTTTAAACCTTTCATAATTTTTAAA GGTTGGAATCTTTTATAATGATTCATAAGACACTTAGATTAAGATTTTACTTTAACAGTCTAAAAATTGATAGAAGAATATCGATATAAA TTGGGATAAACATCACATGAGACAATTTTGCTTCACTTTGCCTTCTGGTTATTTATGGTTTCTGTCTGAATTATTCTGCCTACGTTCTCT TTAAAAGCTGTTGTACGTACTACGGAGAAACTCATCATTTTTATACAGGACACTAATGGGAAGACCAAAATTACTAATAAATTGACATAA CCAACATTAAAACTCATAATTATTTTGTTGACCATTTTGTTAAAATCTACTTTTCAAAAAAAAAAAGCTAGAAATGAATCTAGGCGTAGG TGAACTTTTGCTAAGCAGAAATAACACTACTTTGTTGCCTAGAGAAAGATAACTTCTCAAGTATTTTTATTCCAGTCCTAGATCATATAT GTTCTTTTGTGCAACGGAATTCTAACAGTTCTAAGAGAAAGATCACTGCTGTTTACAGCGCCTTGTGCAGCCTTAGATTTTAATATTCTT TTGTCATTGTTACATCTCATAGAGTAAAGCTCTTATTACCTTGATCCTGAGTCAGAAATCCCACCTGAAATCACCTTTTTTCCCCCTTGA TCAAACATCCCATCCTTCAGCTACCATACTGTTGCTACAGGGATTTTGTGGACTGTGGCCCCTGTCCTGAGGTTGGCACCTTCAGTTCAG CACAGCCTGAGCAGTGAGAAGGTCTGAAAGGAGAGTATATAGTTAAGATCCTTGAGAAAGGGCTGCCTGAGGAACTGACCTCTTAAAGAT CTCAGGATCTTTAAGACAACAAGTTAGGTTCCTACTGGAGTTACCTGCCAGAATGGCCTCTTAATTAACTCAGGTAATGAAGAGCTAACT GTGTTATAATCATCTTGCTTTTGCCTGAATTTGGAGAAAGTATTATAATTAAGTTCCCAGTATCAGAAATGTCCTTACATAAGATTAAAA TATCTTGATGACTAATACCATTCTATGAGAAAGAGTAGTTATATGCCCAGACTGTATTAATTTACTTTAGAAACTAATGTTTGAAGTAAT GGAAAAAATTTTAAATTATAAAGCTAAGGTGCAATAACATTTGCTACTTATTTATAGAATTATTTGAAGAATTTTGTTTTTGAAGTAATG CTTTAAGGAGTATAAGATATTCAAGATAAATTATACTATAAAATGATTTTATTGAAAGTTGAAGGTTACACAAATTGTTTTAGGTATGAG CAGAAGAGGTTAAGGTATTTCTAAAGGTAACATATAGTCAAGAGTTTCCTCAAAATAGTTATTTGGAGAAGAATCAGAATGTCTGTGTAT TTCTTGTCTGTTTCTATGTTGTCTTATAGCTCTGACTAAATGTGTTTACCTATGCAAAAGATTTATTAAAGCATAGAAAAGGTGAATGAA >In-frame_ENST00000356489_ENST00000369705_TCGA-EJ-7789-01A_BCKDHB_chr6_80912929_+_ME1_chr6_84117620_length(amino acids)=863AA_start in transcript=47_stop in transcript=2638 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPT AVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGS DVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDF DRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGL GDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFAN VNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGL IVKGRASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAI FASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVK -------------------------------------------------------------- >In-frame_ENST00000320393_ENST00000369705_TCGA-EJ-7789-01A_BCKDHB_chr6_80912929_+_ME1_chr6_84117620_length(transcript)=4174nt_BP=998nt AGGCGGCGTGCGGCTGCATAGCCTGAGAATCCCGGTGGTGAGCGGGGATGGCGGTTGTAGCGGCGGCTGCCGGCTGGCTACTCAGGCTCA GGGCGGCAGGGGCTGAGGGGCACTGGCGTCGGCTTCCTGGCGCGGGGCTGGCGCGGGGCTTTTTGCACCCCGCCGCGACTGTCGAGGATG CGGCCCAGAGGCGGCAGGTGGCTCATTTTACTTTCCAGCCAGATCCGGAGCCCCGGGAGTACGGGCAAACTCAGAAAATGAATCTTTTCC AGTCTGTAACAAGTGCCTTGGATAACTCATTGGCCAAAGATCCTACTGCAGTAATATTTGGTGAAGATGTTGCCTTTGGTGGAGTCTTTA GATGCACTGTTGGCTTGCGAGACAAATATGGAAAAGATAGAGTTTTTAATACCCCATTGTGTGAACAAGGAATTGTTGGATTTGGAATCG GAATTGCGGTCACTGGAGCTACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCATTTGATCAGATTGTTAATGAAGCTG CCAAGTATCGCTATCGCTCTGGGGATCTTTTTAACTGTGGAAGCCTCACTATCCGGTCCCCTTGGGGCTGTGTTGGTCATGGGGCTCTCT ATCATTCTCAGAGTCCTGAAGCATTTTTTGCCCATTGCCCAGGAATCAAGGTGGTTATACCCAGAAGCCCTTTCCAGGCCAAAGGACTTC TTTTGTCATGCATAGAGGATAAAAATCCTTGTATATTTTTTGAACCTAAAATACTTTACAGGGCAGCAGCGGAAGAAGTCCCTATAGAAC CATACAACATCCCACTGTCCCAGGCCGAAGTCATACAGGAAGGGAGTGATGTTACTCTAGTTGCCTGGGGCACTCAGGTTCATGTGATCC GAGAGGTAGCTTCCATGGCAAAAGAAAAGCTTGGAGTGTCTTGTGAAGTCATTGATCTGAGGACTATAATACCTTGGGATGTGGACACAA TTTGTAAGGACTTGGCCTTTACCCTGGAAGAGAGACAGCAATTGAACATTCATGGATTGTTGCCACCTTCCTTCAACAGTCAGGAGATCC AGGTTCTTAGAGTAGTAAAAAATTTCGAGCATCTGAACTCTGACTTTGACAGGTATCTTCTCTTAATGGATCTCCAAGATAGAAATGAAA AACTCTTTTATAGAGTGCTGACATCTGACATTGAGAAATTCATGCCTATTGTTTATACTCCCACTGTGGGTCTGGCTTGCCAACAATATA GTTTGGTGTTTCGGAAGCCAAGAGGTCTCTTTATTACTATCCACGATCGAGGGCATATTGCTTCAGTTCTCAATGCATGGCCAGAAGATG TCATCAAGGCCATTGTGGTGACTGATGGAGAGCGTATTCTTGGCTTGGGAGACCTTGGCTGTAATGGAATGGGCATCCCTGTGGGTAAAT TGGCTCTATATACAGCTTGCGGAGGGATGAATCCTCAAGAATGTCTGCCTGTCATTCTGGATGTGGGAACCGAAAATGAGGAGTTACTTA AAGATCCACTCTACATTGGACTACGGCAGAGAAGAGTAAGAGGTTCTGAATATGATGATTTTTTGGACGAATTCATGGAGGCAGTTTCTT CCAAGTATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATGTGAATGCATTTCGTCTCCTGAACAAGTATCGAAACCAGTATT GCACATTCAATGATGATATTCAAGGAACAGCATCTGTTGCAGTTGCAGGTCTCCTTGCAGCTCTTCGAATAACCAAGAACAAACTGTCTG ATCAAACAATACTATTCCAAGGAGCTGGAGAGGCTGCCCTAGGGATTGCACACCTGATTGTGATGGCCTTGGAAAAAGAAGGTTTACCAA AAGAGAAAGCCATCAAAAAGATATGGCTGGTTGATTCAAAAGGATTAATAGTTAAGGGACGTGCTTCCTTAACACAAGAGAAAGAGAAGT TTGCCCATGAACATGAAGAAATGAAGAACCTAGAAGCCATTGTTCAAGAAATAAAACCAACTGCCCTCATAGGAGTTGCTGCAATTGGTG GTGCATTCTCAGAACAAATTCTCAAAGATATGGCTGCCTTCAATGAACGGCCTATTATTTTTGCTTTGAGTAATCCAACTAGCAAAGCAG AATGTTCTGCAGAGCAGTGCTACAAAATAACCAAGGGACGTGCAATTTTTGCCAGTGGCAGTCCTTTTGATCCAGTCACTCTTCCAAATG GACAGACCCTATATCCTGGCCAAGGCAACAATTCCTATGTGTTCCCTGGAGTTGCTCTTGGTGTTGTGGCGTGTGGATTGAGGCAGATCA CAGATAATATTTTCCTCACTACTGCTGAGGTTATAGCTCAGCAAGTGTCAGATAAACACTTGGAAGAGGGTCGGCTTTATCCTCCTTTGA ATACCATTAGAGATGTTTCTCTGAAAATTGCAGAAAAGATTGTGAAAGATGCATACCAAGAAAAGACAGCCACAGTTTATCCTGAACCGC AAAACAAAGAAGCATTTGTCCGCTCCCAGATGTATAGTACTGATTATGACCAGATTCTACCTGATTGTTATTCTTGGCCTGAAGAGGTGC AGAAAATACAGACCAAAGTTGACCAGTAGGATAATAGCAAACATTTCTAACTCTATTAATGAGGTCTTTAAACCTTTCATAATTTTTAAA GGTTGGAATCTTTTATAATGATTCATAAGACACTTAGATTAAGATTTTACTTTAACAGTCTAAAAATTGATAGAAGAATATCGATATAAA TTGGGATAAACATCACATGAGACAATTTTGCTTCACTTTGCCTTCTGGTTATTTATGGTTTCTGTCTGAATTATTCTGCCTACGTTCTCT TTAAAAGCTGTTGTACGTACTACGGAGAAACTCATCATTTTTATACAGGACACTAATGGGAAGACCAAAATTACTAATAAATTGACATAA CCAACATTAAAACTCATAATTATTTTGTTGACCATTTTGTTAAAATCTACTTTTCAAAAAAAAAAAGCTAGAAATGAATCTAGGCGTAGG TGAACTTTTGCTAAGCAGAAATAACACTACTTTGTTGCCTAGAGAAAGATAACTTCTCAAGTATTTTTATTCCAGTCCTAGATCATATAT GTTCTTTTGTGCAACGGAATTCTAACAGTTCTAAGAGAAAGATCACTGCTGTTTACAGCGCCTTGTGCAGCCTTAGATTTTAATATTCTT TTGTCATTGTTACATCTCATAGAGTAAAGCTCTTATTACCTTGATCCTGAGTCAGAAATCCCACCTGAAATCACCTTTTTTCCCCCTTGA TCAAACATCCCATCCTTCAGCTACCATACTGTTGCTACAGGGATTTTGTGGACTGTGGCCCCTGTCCTGAGGTTGGCACCTTCAGTTCAG CACAGCCTGAGCAGTGAGAAGGTCTGAAAGGAGAGTATATAGTTAAGATCCTTGAGAAAGGGCTGCCTGAGGAACTGACCTCTTAAAGAT CTCAGGATCTTTAAGACAACAAGTTAGGTTCCTACTGGAGTTACCTGCCAGAATGGCCTCTTAATTAACTCAGGTAATGAAGAGCTAACT GTGTTATAATCATCTTGCTTTTGCCTGAATTTGGAGAAAGTATTATAATTAAGTTCCCAGTATCAGAAATGTCCTTACATAAGATTAAAA TATCTTGATGACTAATACCATTCTATGAGAAAGAGTAGTTATATGCCCAGACTGTATTAATTTACTTTAGAAACTAATGTTTGAAGTAAT GGAAAAAATTTTAAATTATAAAGCTAAGGTGCAATAACATTTGCTACTTATTTATAGAATTATTTGAAGAATTTTGTTTTTGAAGTAATG CTTTAAGGAGTATAAGATATTCAAGATAAATTATACTATAAAATGATTTTATTGAAAGTTGAAGGTTACACAAATTGTTTTAGGTATGAG CAGAAGAGGTTAAGGTATTTCTAAAGGTAACATATAGTCAAGAGTTTCCTCAAAATAGTTATTTGGAGAAGAATCAGAATGTCTGTGTAT TTCTTGTCTGTTTCTATGTTGTCTTATAGCTCTGACTAAATGTGTTTACCTATGCAAAAGATTTATTAAAGCATAGAAAAGGTGAATGAA >In-frame_ENST00000320393_ENST00000369705_TCGA-EJ-7789-01A_BCKDHB_chr6_80912929_+_ME1_chr6_84117620_length(amino acids)=863AA_start in transcript=47_stop in transcript=2638 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPT AVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGS DVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDF DRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGL GDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFAN VNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGL IVKGRASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAI FASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for BCKDHB-ME1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for BCKDHB-ME1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | ME1 | P48163 | DB00157 | NADH | Small molecule | Approved|Nutraceutical |
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Related Diseases for BCKDHB-ME1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | BCKDHB | C0024776 | Maple Syrup Urine Disease | 5 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
| Hgene | BCKDHB | C2930990 | Maple syrup urine disease, type 1B | 1 | GENOMICS_ENGLAND |
| Tgene | ME1 | C0019193 | Hepatitis, Toxic | 1 | CTD_human |
| Tgene | ME1 | C0028754 | Obesity | 1 | CTD_human |
| Tgene | ME1 | C0043094 | Weight Gain | 1 | CTD_human |
| Tgene | ME1 | C0860207 | Drug-Induced Liver Disease | 1 | CTD_human |
| Tgene | ME1 | C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human |
| Tgene | ME1 | C2239176 | Liver carcinoma | 1 | CTD_human |
| Tgene | ME1 | C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human |
| Tgene | ME1 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
| Tgene | ME1 | C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |
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