|
||||||
|
 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:TSFM-XRCC6BP1 (FusionGDB2 ID:93914) |
Fusion Gene Summary for TSFM-XRCC6BP1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TSFM-XRCC6BP1 | Fusion gene ID: 93914 | Hgene | Tgene | Gene symbol | TSFM | XRCC6BP1 | Gene ID | 10102 | 91419 |
| Gene name | Ts translation elongation factor, mitochondrial | ATP23 metallopeptidase and ATP synthase assembly factor homolog | |
| Synonyms | EFTS|EFTSMT | KUB3|XRCC6BP1 | |
| Cytomap | 12q14.1 | 12q14.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | elongation factor Ts, mitochondrialEF-TsEF-TsMtmitochondrial elongation factor Ts | mitochondrial inner membrane protease ATP23 homologKu70-binding protein 3XRCC6-binding protein 1 | |
| Modification date | 20200313 | 20200320 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000543727, ENST00000550559, ENST00000548851, ENST00000454289, ENST00000540550, ENST00000323833, ENST00000350762, ENST00000497617, | ENST00000300145, ENST00000546709, | |
| Fusion gene scores | * DoF score | 26 X 8 X 7=1456 | 18 X 7 X 5=630 |
| # samples | 30 | 21 | |
| ** MAII score | log2(30/1456*10)=-2.27897594970282 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(21/630*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: TSFM [Title/Abstract] AND XRCC6BP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | TSFM(58186856)-XRCC6BP1(58339411), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | TSFM | GO:0070129 | regulation of mitochondrial translation | 27677415 |
| Fusion gene breakpoints across TSFM (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across XRCC6BP1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | GBM | TCGA-06-2558-01A | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
Top |
Fusion Gene ORF analysis for TSFM-XRCC6BP1 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000543727 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 5CDS-intron | ENST00000543727 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| In-frame | ENST00000550559 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 5CDS-intron | ENST00000550559 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| In-frame | ENST00000548851 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 5CDS-intron | ENST00000548851 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| In-frame | ENST00000454289 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 5CDS-intron | ENST00000454289 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| intron-3CDS | ENST00000540550 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| intron-intron | ENST00000540550 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| In-frame | ENST00000323833 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 5CDS-intron | ENST00000323833 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| In-frame | ENST00000350762 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 5CDS-intron | ENST00000350762 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 3UTR-3CDS | ENST00000497617 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| 3UTR-intron | ENST00000497617 | ENST00000546709 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000543727 | TSFM | chr12 | 58186856 | + | ENST00000300145 | XRCC6BP1 | chr12 | 58339411 | + | 1561 | 628 | 6 | 1181 | 391 |
| ENST00000550559 | TSFM | chr12 | 58186856 | + | ENST00000300145 | XRCC6BP1 | chr12 | 58339411 | + | 1519 | 586 | 15 | 1139 | 374 |
| ENST00000548851 | TSFM | chr12 | 58186856 | + | ENST00000300145 | XRCC6BP1 | chr12 | 58339411 | + | 1519 | 586 | 15 | 1139 | 374 |
| ENST00000454289 | TSFM | chr12 | 58186856 | + | ENST00000300145 | XRCC6BP1 | chr12 | 58339411 | + | 1717 | 784 | 42 | 1337 | 431 |
| ENST00000323833 | TSFM | chr12 | 58186856 | + | ENST00000300145 | XRCC6BP1 | chr12 | 58339411 | + | 1593 | 660 | 26 | 1213 | 395 |
| ENST00000350762 | TSFM | chr12 | 58186856 | + | ENST00000300145 | XRCC6BP1 | chr12 | 58339411 | + | 1793 | 860 | 409 | 1413 | 334 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000543727 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + | 0.000362617 | 0.99963737 |
| ENST00000550559 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + | 0.000391261 | 0.9996088 |
| ENST00000548851 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + | 0.000391261 | 0.9996088 |
| ENST00000454289 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + | 0.003749731 | 0.99625033 |
| ENST00000323833 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + | 0.000520036 | 0.99947995 |
| ENST00000350762 | ENST00000300145 | TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339411 | + | 0.000507915 | 0.99949205 |
Top |
Fusion Genomic Features for TSFM-XRCC6BP1 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339410 | + | 1.51E-08 | 1 |
| TSFM | chr12 | 58186856 | + | XRCC6BP1 | chr12 | 58339410 | + | 1.51E-08 | 1 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for TSFM-XRCC6BP1 |
| Go to FGviewer for the breakpoints of chr12:58186856-chr12:58339411 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
Fusion Gene Sequence for TSFM-XRCC6BP1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000543727_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(transcript)=1561nt_BP=628nt GTAGGTTTGTTGCCTCACCAGTGCGCCCGCCGGAGGGTGTTTATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGTTTCTG GTCGCGCGGACCGGGAGCTACCCGGCTGGGTCTCTTCTGCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCCCCGTCTGTCT GCCTCGGCCTCCAGCAAGGAGCTCCTCATGAAGCTGCGGCGGAAAACAGGCTACTCCTTTGTAAATTGCAAGAAAGCTCTGGAGACTTGT GGCGGGGACCTCAAACAGGCAGAGATCTGGCTCCACAAGGAGGCCCAGAAGGAGGGCTGGAGCAAAGCTGCCAAGCTCCAAGGGAGGAAG ACCAAAGAAGGCCTGATTGGGCTGTTGCAGGAAGGAAACACAACTGTATTAGTAGAGGTAAACTGTGAGACAGATTTTGTTTCTAGAAAT TTAAAATTTCAACTGTTGGTCCAGCAAGTAGCCCTTGGAACCATGATGCATTGTCAGACCCTAAAGGATCAACCCTCTGCATACAGTAAA GGTTTCTTGAATTCCTCTGAGCTTTCTGGACTTCCAGCTGGGCCTGACAGAGAAGGCTCACTCAAGGATCAGTTGGCTTTAGCAATTGAT CCATATGTCAAACTTCTGCTTGATGCTATGAAACACTCAGGTTGTGCTGTTAACAAAGATAGACACTTTTCTTGCGAAGACTGTAATGGA AATGTCAGTGGAGGTTTTGATGCTTCAACATCTCAGATAGTTTTGTGCCAGAATAATATCCATAATCAGGCCCATATGAACAGAGTGGTC ACACACGAGCTTATTCATGCATTTGATCATTGTCGTGCCCATGTCGACTGGTTCACCAACATCAGACATTTGGCGTGCTCAGAGGTTCGA GCTGCTAACCTTAGTGGAGACTGCTCACTTGTCAATGAAATATTCAGGTTACATTTTGGATTAAAACAACACCACCAGACTTGTGTGCGA GACAGAGCCACTCTTTCTATCCTGGCTGTTAGGAATATCAGCAAAGAAGTAGCTAAAAAGGCTGTTGATGAAGTTTTTGAATCTTGTTTC AATGACCATGAACCTTTTGGAAGGATCCCACATAACAAGACTTATGCAAGATATGCTCACAGAGACTTTGAAAACCGTGATCGGTATTAT TCAAATATATGAGCACAATGACATTTTTATATTACAGAGCTTCCATCATCATGAAGAAAAAAAAATTTGGTTCTCAAGTGAACAAACATA TAAAATGTAAACAATCCCTACAATCCAGATAAAACAGAGAAGACTGTGATTCTAGCATATTATCAGAAAAAGTAACTATGGCAAAAAATG AAACTGCTTTAAACTCCAAGGCAGAAATTGTATCTTTATAGCTAACCATTTAGTAAATAAATACATTACATTTTTGTATTTTAGTCATTT GTTTTTATTACATGTGATTATTTTAAAATTTGATTATGAAACCTGTGAAGTGTGCTCTTCCATGATGTTGATAGGTGACCACTGTTGGTA >In-frame_ENST00000543727_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(amino acids)=391AA_start in transcript=6_stop in transcript=1181 MLPHQCARRRVFIAAREMSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGG DLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGF LNSSELSGLPAGPDREGSLKDQLALAIDPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTH ELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFND -------------------------------------------------------------- >In-frame_ENST00000550559_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(transcript)=1519nt_BP=586nt ATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGTTTCTGGTCGCGCGGACCGGGAGCTACCCGGCTGGGTCTCTTCTGCGT CAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCCCCGTCTGTCTGCCTCGGCCTCCAGCAAGGAGCTCCTCATGAAGCTGCGGCGG AAAACAGGCTACTCCTTTGTAAATTGCAAGAAAGCTCTGGAGACTTGTGGCGGGGACCTCAAACAGGCAGAGATCTGGCTCCACAAGGAG GCCCAGAAGGAGGGCTGGAGCAAAGCTGCCAAGCTCCAAGGGAGGAAGACCAAAGAAGGCCTGATTGGGCTGTTGCAGGAAGGAAACACA ACTGTATTAGTAGAGGTAAACTGTGAGACAGATTTTGTTTCTAGAAATTTAAAATTTCAACTGTTGGTCCAGCAAGTAGCCCTTGGAACC ATGATGCATTGTCAGACCCTAAAGGATCAACCCTCTGCATACAGTAAAGGTTTCTTGAATTCCTCTGAGCTTTCTGGACTTCCAGCTGGG CCTGACAGAGAAGGCTCACTCAAGGATCAGTTGGCTTTAGCAATTGATCCATATGTCAAACTTCTGCTTGATGCTATGAAACACTCAGGT TGTGCTGTTAACAAAGATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGTCAGTGGAGGTTTTGATGCTTCAACATCTCAGATAGTT TTGTGCCAGAATAATATCCATAATCAGGCCCATATGAACAGAGTGGTCACACACGAGCTTATTCATGCATTTGATCATTGTCGTGCCCAT GTCGACTGGTTCACCAACATCAGACATTTGGCGTGCTCAGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGCTCACTTGTCAATGAAATA TTCAGGTTACATTTTGGATTAAAACAACACCACCAGACTTGTGTGCGAGACAGAGCCACTCTTTCTATCCTGGCTGTTAGGAATATCAGC AAAGAAGTAGCTAAAAAGGCTGTTGATGAAGTTTTTGAATCTTGTTTCAATGACCATGAACCTTTTGGAAGGATCCCACATAACAAGACT TATGCAAGATATGCTCACAGAGACTTTGAAAACCGTGATCGGTATTATTCAAATATATGAGCACAATGACATTTTTATATTACAGAGCTT CCATCATCATGAAGAAAAAAAAATTTGGTTCTCAAGTGAACAAACATATAAAATGTAAACAATCCCTACAATCCAGATAAAACAGAGAAG ACTGTGATTCTAGCATATTATCAGAAAAAGTAACTATGGCAAAAAATGAAACTGCTTTAAACTCCAAGGCAGAAATTGTATCTTTATAGC TAACCATTTAGTAAATAAATACATTACATTTTTGTATTTTAGTCATTTGTTTTTATTACATGTGATTATTTTAAAATTTGATTATGAAAC >In-frame_ENST00000550559_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(amino acids)=374AA_start in transcript=15_stop in transcript=1139 MSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEG WSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREG SLKDQLALAIDPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFT NIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIPHNKTYARYA -------------------------------------------------------------- >In-frame_ENST00000548851_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(transcript)=1519nt_BP=586nt ATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGTTTCTGGTCGCGCGGACCGGGAGCTACCCGGCTGGGTCTCTTCTGCGT CAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCCCCGTCTGTCTGCCTCGGCCTCCAGCAAGGAGCTCCTCATGAAGCTGCGGCGG AAAACAGGCTACTCCTTTGTAAATTGCAAGAAAGCTCTGGAGACTTGTGGCGGGGACCTCAAACAGGCAGAGATCTGGCTCCACAAGGAG GCCCAGAAGGAGGGCTGGAGCAAAGCTGCCAAGCTCCAAGGGAGGAAGACCAAAGAAGGCCTGATTGGGCTGTTGCAGGAAGGAAACACA ACTGTATTAGTAGAGGTAAACTGTGAGACAGATTTTGTTTCTAGAAATTTAAAATTTCAACTGTTGGTCCAGCAAGTAGCCCTTGGAACC ATGATGCATTGTCAGACCCTAAAGGATCAACCCTCTGCATACAGTAAAGGTTTCTTGAATTCCTCTGAGCTTTCTGGACTTCCAGCTGGG CCTGACAGAGAAGGCTCACTCAAGGATCAGTTGGCTTTAGCAATTGATCCATATGTCAAACTTCTGCTTGATGCTATGAAACACTCAGGT TGTGCTGTTAACAAAGATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGTCAGTGGAGGTTTTGATGCTTCAACATCTCAGATAGTT TTGTGCCAGAATAATATCCATAATCAGGCCCATATGAACAGAGTGGTCACACACGAGCTTATTCATGCATTTGATCATTGTCGTGCCCAT GTCGACTGGTTCACCAACATCAGACATTTGGCGTGCTCAGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGCTCACTTGTCAATGAAATA TTCAGGTTACATTTTGGATTAAAACAACACCACCAGACTTGTGTGCGAGACAGAGCCACTCTTTCTATCCTGGCTGTTAGGAATATCAGC AAAGAAGTAGCTAAAAAGGCTGTTGATGAAGTTTTTGAATCTTGTTTCAATGACCATGAACCTTTTGGAAGGATCCCACATAACAAGACT TATGCAAGATATGCTCACAGAGACTTTGAAAACCGTGATCGGTATTATTCAAATATATGAGCACAATGACATTTTTATATTACAGAGCTT CCATCATCATGAAGAAAAAAAAATTTGGTTCTCAAGTGAACAAACATATAAAATGTAAACAATCCCTACAATCCAGATAAAACAGAGAAG ACTGTGATTCTAGCATATTATCAGAAAAAGTAACTATGGCAAAAAATGAAACTGCTTTAAACTCCAAGGCAGAAATTGTATCTTTATAGC TAACCATTTAGTAAATAAATACATTACATTTTTGTATTTTAGTCATTTGTTTTTATTACATGTGATTATTTTAAAATTTGATTATGAAAC >In-frame_ENST00000548851_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(amino acids)=374AA_start in transcript=15_stop in transcript=1139 MSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEG WSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREG SLKDQLALAIDPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFT NIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIPHNKTYARYA -------------------------------------------------------------- >In-frame_ENST00000454289_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(transcript)=1717nt_BP=784nt ATTTTACCTGGGGTGGGAGGTGGGGGGTAATTCCCGTATGAAATGTGTCGTCTCAAGAAATCAAGTAGAGGCGAGGACTGTGTTCCTCCG GCCAGCAGGTGGCACCATACTCGTTTGGTGCGTTCCGCTGGAGAATTCTGGCCCTTCCGCCGCGCCGTAGGTTTGTTGCCTCACCAGTGC GCCCGCCGGAGGGTGTTTATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGTTTCTGGTCGCGCGGACCGGGAGCTACCCG GCTGGGTCTCTTCTGCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCCCCGTCTGTCTGCCTCGGCCTCCAGCAAGGAGCTC CTCATGAAGCTGCGGCGGAAAACAGGCTACTCCTTTGTAAATTGCAAGAAAGCTCTGGAGACTTGTGGCGGGGACCTCAAACAGGCAGAG ATCTGGCTCCACAAGGAGGCCCAGAAGGAGGGCTGGAGCAAAGCTGCCAAGCTCCAAGGGAGGAAGACCAAAGAAGGCCTGATTGGGCTG TTGCAGGAAGGAAACACAACTGTATTAGTAGAGGTAAACTGTGAGACAGATTTTGTTTCTAGAAATTTAAAATTTCAACTGTTGGTCCAG CAAGTAGCCCTTGGAACCATGATGCATTGTCAGACCCTAAAGGATCAACCCTCTGCATACAGTAAAGGTTTCTTGAATTCCTCTGAGCTT TCTGGACTTCCAGCTGGGCCTGACAGAGAAGGCTCACTCAAGGATCAGTTGGCTTTAGCAATTGATCCATATGTCAAACTTCTGCTTGAT GCTATGAAACACTCAGGTTGTGCTGTTAACAAAGATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGTCAGTGGAGGTTTTGATGCT TCAACATCTCAGATAGTTTTGTGCCAGAATAATATCCATAATCAGGCCCATATGAACAGAGTGGTCACACACGAGCTTATTCATGCATTT GATCATTGTCGTGCCCATGTCGACTGGTTCACCAACATCAGACATTTGGCGTGCTCAGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGC TCACTTGTCAATGAAATATTCAGGTTACATTTTGGATTAAAACAACACCACCAGACTTGTGTGCGAGACAGAGCCACTCTTTCTATCCTG GCTGTTAGGAATATCAGCAAAGAAGTAGCTAAAAAGGCTGTTGATGAAGTTTTTGAATCTTGTTTCAATGACCATGAACCTTTTGGAAGG ATCCCACATAACAAGACTTATGCAAGATATGCTCACAGAGACTTTGAAAACCGTGATCGGTATTATTCAAATATATGAGCACAATGACAT TTTTATATTACAGAGCTTCCATCATCATGAAGAAAAAAAAATTTGGTTCTCAAGTGAACAAACATATAAAATGTAAACAATCCCTACAAT CCAGATAAAACAGAGAAGACTGTGATTCTAGCATATTATCAGAAAAAGTAACTATGGCAAAAAATGAAACTGCTTTAAACTCCAAGGCAG AAATTGTATCTTTATAGCTAACCATTTAGTAAATAAATACATTACATTTTTGTATTTTAGTCATTTGTTTTTATTACATGTGATTATTTT AAAATTTGATTATGAAACCTGTGAAGTGTGCTCTTCCATGATGTTGATAGGTGACCACTGTTGGTATTTACATTAAATGTAAAGAAATGT >In-frame_ENST00000454289_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(amino acids)=431AA_start in transcript=42_stop in transcript=1337 MCRLKKSSRGEDCVPPASRWHHTRLVRSAGEFWPFRRAVGLLPHQCARRRVFIAAREMSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHT FYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNC ETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIDPYVKLLLDAMKHSGCAVNKDRH FSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLK -------------------------------------------------------------- >In-frame_ENST00000323833_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(transcript)=1593nt_BP=660nt GGAGGGTGTTTATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGTTTCTGGTCGCGCGGACCGGGAGCTACCCGGCTGGGT CTCTTCTGCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCCCCGTCTGTCTGCCTCGGCCTCCAGCAAGGAGCTCCTCATGA AGCTGCGGCGGAAAACAGGCTACTCCTTTGTAAATTGCAAGAAAGCTCTGGAGACTTGTGGCGGGGACCTCAAACAGGCAGAGATCTGGC TCCACAAGGAGGCCCAGAAGGAGGGCTGGAGCAAAGCTGCCAAGCTCCAAGGGAGGAAGACCAAAGAAGGCCTGATTGGGCTGTTGCAGG AAGGAAACACAACTGTATTAGTAGAGGTAAACTGTGAGACAGATTTTGTTTCTAGAAATTTAAAATTTCAACTGTTGGTCCAGCAAGTAG CCCTTGGAACCATGATGCATTGTCAGACCCTAAAGGATCAACCCTCTGCATACAGTAAAGTGCAGTGGCTCACGCCTGTAAACCTAGCAC TTTGGGAGGCTGAAGCAGGTGGATCACTTGAGGGTTTCTTGAATTCCTCTGAGCTTTCTGGACTTCCAGCTGGGCCTGACAGAGAAGGCT CACTCAAGGATCAGTTGGCTTTAGCAATTGATCCATATGTCAAACTTCTGCTTGATGCTATGAAACACTCAGGTTGTGCTGTTAACAAAG ATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGTCAGTGGAGGTTTTGATGCTTCAACATCTCAGATAGTTTTGTGCCAGAATAATA TCCATAATCAGGCCCATATGAACAGAGTGGTCACACACGAGCTTATTCATGCATTTGATCATTGTCGTGCCCATGTCGACTGGTTCACCA ACATCAGACATTTGGCGTGCTCAGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGCTCACTTGTCAATGAAATATTCAGGTTACATTTTG GATTAAAACAACACCACCAGACTTGTGTGCGAGACAGAGCCACTCTTTCTATCCTGGCTGTTAGGAATATCAGCAAAGAAGTAGCTAAAA AGGCTGTTGATGAAGTTTTTGAATCTTGTTTCAATGACCATGAACCTTTTGGAAGGATCCCACATAACAAGACTTATGCAAGATATGCTC ACAGAGACTTTGAAAACCGTGATCGGTATTATTCAAATATATGAGCACAATGACATTTTTATATTACAGAGCTTCCATCATCATGAAGAA AAAAAAATTTGGTTCTCAAGTGAACAAACATATAAAATGTAAACAATCCCTACAATCCAGATAAAACAGAGAAGACTGTGATTCTAGCAT ATTATCAGAAAAAGTAACTATGGCAAAAAATGAAACTGCTTTAAACTCCAAGGCAGAAATTGTATCTTTATAGCTAACCATTTAGTAAAT AAATACATTACATTTTTGTATTTTAGTCATTTGTTTTTATTACATGTGATTATTTTAAAATTTGATTATGAAACCTGTGAAGTGTGCTCT >In-frame_ENST00000323833_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(amino acids)=395AA_start in transcript=26_stop in transcript=1213 MSLLRSLRVFLVARTGSYPAGSLLRQSPQPRHTFYAGPRLSASASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEG WSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKVQWLTPVNLALWEAEAGGS LEGFLNSSELSGLPAGPDREGSLKDQLALAIDPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNR VVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFES -------------------------------------------------------------- >In-frame_ENST00000350762_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(transcript)=1793nt_BP=860nt GTGTTTATCGCGGCTAGAGAGATGTCGCTGCTGCGGTCGCTGCGCGTGTTTCTGGTCGCGCGGACCGGGAGCTACCCGGCTGGGTCTCTT CTGCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCCCCGTCTGTCTGCCTCGGCCTCCAGCAAGGAGCTCCTCATGAAGCTG CGGCGGAAAACAGGCTACTCCTTTGTAAATTGCAAGAAAGCTCTGGAGACTTGTGGCGGGGACCTCAAACAGACGGAGTCTTGCTCTGTG GCCCAGGCCGGCGTGCAATGAGTTGTGTAGTTTTTGCCTGTACGGTCATGCGTCTCTTAATAGGAAGATACATTCTGAGAAATGGCGTCG TTAGGAGATTTTGGCTTATGCACATCATAGAGTACCTACACAAACCTAGATGGTATATTGTACTACAACCTGGGCTATATGGAATTGCCA GCTGCTCCTAGGCTACAAACCGTTACAAAATGTTACTGGACTGAATACTGTAGGCAGTTGTAACACAGTGGCAGAGATCTGGCTCCACAA GGAGGCCCAGAAGGAGGGCTGGAGCAAAGCTGCCAAGCTCCAAGGGAGGAAGACCAAAGAAGGCCTGATTGGGCTGTTGCAGGAAGGAAA CACAACTGTATTAGTAGAGGTAAACTGTGAGACAGATTTTGTTTCTAGAAATTTAAAATTTCAACTGTTGGTCCAGCAAGTAGCCCTTGG AACCATGATGCATTGTCAGACCCTAAAGGATCAACCCTCTGCATACAGTAAAGGTTTCTTGAATTCCTCTGAGCTTTCTGGACTTCCAGC TGGGCCTGACAGAGAAGGCTCACTCAAGGATCAGTTGGCTTTAGCAATTGATCCATATGTCAAACTTCTGCTTGATGCTATGAAACACTC AGGTTGTGCTGTTAACAAAGATAGACACTTTTCTTGCGAAGACTGTAATGGAAATGTCAGTGGAGGTTTTGATGCTTCAACATCTCAGAT AGTTTTGTGCCAGAATAATATCCATAATCAGGCCCATATGAACAGAGTGGTCACACACGAGCTTATTCATGCATTTGATCATTGTCGTGC CCATGTCGACTGGTTCACCAACATCAGACATTTGGCGTGCTCAGAGGTTCGAGCTGCTAACCTTAGTGGAGACTGCTCACTTGTCAATGA AATATTCAGGTTACATTTTGGATTAAAACAACACCACCAGACTTGTGTGCGAGACAGAGCCACTCTTTCTATCCTGGCTGTTAGGAATAT CAGCAAAGAAGTAGCTAAAAAGGCTGTTGATGAAGTTTTTGAATCTTGTTTCAATGACCATGAACCTTTTGGAAGGATCCCACATAACAA GACTTATGCAAGATATGCTCACAGAGACTTTGAAAACCGTGATCGGTATTATTCAAATATATGAGCACAATGACATTTTTATATTACAGA GCTTCCATCATCATGAAGAAAAAAAAATTTGGTTCTCAAGTGAACAAACATATAAAATGTAAACAATCCCTACAATCCAGATAAAACAGA GAAGACTGTGATTCTAGCATATTATCAGAAAAAGTAACTATGGCAAAAAATGAAACTGCTTTAAACTCCAAGGCAGAAATTGTATCTTTA TAGCTAACCATTTAGTAAATAAATACATTACATTTTTGTATTTTAGTCATTTGTTTTTATTACATGTGATTATTTTAAAATTTGATTATG >In-frame_ENST00000350762_ENST00000300145_TCGA-06-2558-01A_TSFM_chr12_58186856_+_XRCC6BP1_chr12_58339411_length(amino acids)=334AA_start in transcript=409_stop in transcript=1413 MVYCTTTWAIWNCQLLLGYKPLQNVTGLNTVGSCNTVAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSR NLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIDPYVKLLLDAMKHSGCAVNKDRHFSCEDCN GNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCV -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for TSFM-XRCC6BP1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for TSFM-XRCC6BP1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for TSFM-XRCC6BP1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | TSFM | C1864840 | Combined Oxidative Phosphorylation Deficiency 3 | 6 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
| Hgene | TSFM | C0036572 | Seizures | 1 | GENOMICS_ENGLAND |
Copyright 2021-Present -The University of Texas Health Science Center at Houston (UTHealth)
Web File Viewing | Emergency Information |Campus Carry|Site Policies