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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:TTC28-PITPNB (FusionGDB2 ID:94328) |
Fusion Gene Summary for TTC28-PITPNB |
Fusion gene summary |
Fusion gene information | Fusion gene name: TTC28-PITPNB | Fusion gene ID: 94328 | Hgene | Tgene | Gene symbol | TTC28 | PITPNB | Gene ID | 23331 | 23760 |
Gene name | tetratricopeptide repeat domain 28 | phosphatidylinositol transfer protein beta | |
Synonyms | TPRBK | PI-TP-beta|PtdInsTP|VIB1B | |
Cytomap | 22q12.1 | 22q12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | tetratricopeptide repeat protein 28TPR repeat protein 28TPR repeat-containing big gene cloned at KeioTPR-containing big gene cloned at Keio | phosphatidylinositol transfer protein beta isoformPtdIns transfer protein betaphosphotidylinositol transfer protein, beta | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000397906, ENST00000490475, | ENST00000335272, ENST00000320996, ENST00000455418, | |
Fusion gene scores | * DoF score | 46 X 33 X 13=19734 | 7 X 8 X 7=392 |
# samples | 53 | 10 | |
** MAII score | log2(53/19734*10)=-5.218547244106 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/392*10)=-1.97085365434048 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TTC28 [Title/Abstract] AND PITPNB [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | TTC28(29025539)-PITPNB(28269803), # samples:1 TTC28(28385866)-PITPNB(28269803), # samples:1 TTC28(29025540)-PITPNB(28269803), # samples:1 TTC28(29025540)-PITPNB(28256229), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | TTC28-PITPNB seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PITPNB | GO:0015914 | phospholipid transport | 16274224 |
Fusion gene breakpoints across TTC28 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across PITPNB (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LIHC | TCGA-DD-A1EB | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
ChimerDB4 | CESC | TCGA-HM-A6W2-01A | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
ChimerDB4 | LIHC | TCGA-DD-A1EB-01A | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
ChimerDB4 | LUSC | TCGA-77-7141 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
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Fusion Gene ORF analysis for TTC28-PITPNB |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
In-frame | ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
In-frame | ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000335272 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000320996 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000455418 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - |
Frame-shift | ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
Frame-shift | ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
Frame-shift | ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000335272 | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000320996 | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000455418 | TTC28 | chr22 | 28385866 | - | PITPNB | chr22 | 28269803 | - |
In-frame | ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
In-frame | ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
In-frame | ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000335272 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000320996 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
intron-3CDS | ENST00000490475 | ENST00000455418 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - |
In-frame | ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
In-frame | ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
In-frame | ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
intron-3CDS | ENST00000490475 | ENST00000335272 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
intron-3CDS | ENST00000490475 | ENST00000320996 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
intron-3CDS | ENST00000490475 | ENST00000455418 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000397906 | TTC28 | chr22 | 29025539 | - | ENST00000335272 | PITPNB | chr22 | 28269803 | - | 2916 | 523 | 94 | 882 | 262 |
ENST00000397906 | TTC28 | chr22 | 29025539 | - | ENST00000320996 | PITPNB | chr22 | 28269803 | - | 2829 | 523 | 94 | 885 | 263 |
ENST00000397906 | TTC28 | chr22 | 29025539 | - | ENST00000455418 | PITPNB | chr22 | 28269803 | - | 2913 | 523 | 94 | 882 | 262 |
ENST00000397906 | TTC28 | chr22 | 29025540 | - | ENST00000335272 | PITPNB | chr22 | 28269803 | - | 2916 | 523 | 94 | 882 | 262 |
ENST00000397906 | TTC28 | chr22 | 29025540 | - | ENST00000320996 | PITPNB | chr22 | 28269803 | - | 2829 | 523 | 94 | 885 | 263 |
ENST00000397906 | TTC28 | chr22 | 29025540 | - | ENST00000455418 | PITPNB | chr22 | 28269803 | - | 2913 | 523 | 94 | 882 | 262 |
ENST00000397906 | TTC28 | chr22 | 29025540 | - | ENST00000335272 | PITPNB | chr22 | 28256229 | - | 2838 | 523 | 94 | 804 | 236 |
ENST00000397906 | TTC28 | chr22 | 29025540 | - | ENST00000320996 | PITPNB | chr22 | 28256229 | - | 2751 | 523 | 94 | 807 | 237 |
ENST00000397906 | TTC28 | chr22 | 29025540 | - | ENST00000455418 | PITPNB | chr22 | 28256229 | - | 2835 | 523 | 94 | 804 | 236 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - | 0.000763303 | 0.9992367 |
ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - | 0.00111497 | 0.9988851 |
ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 29025539 | - | PITPNB | chr22 | 28269803 | - | 0.000742719 | 0.99925727 |
ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - | 0.000763303 | 0.9992367 |
ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - | 0.00111497 | 0.9988851 |
ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28269803 | - | 0.000742719 | 0.99925727 |
ENST00000397906 | ENST00000335272 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - | 0.00179893 | 0.998201 |
ENST00000397906 | ENST00000320996 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - | 0.00195566 | 0.9980444 |
ENST00000397906 | ENST00000455418 | TTC28 | chr22 | 29025540 | - | PITPNB | chr22 | 28256229 | - | 0.00177119 | 0.99822885 |
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Fusion Genomic Features for TTC28-PITPNB |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for TTC28-PITPNB |
Go to FGviewer for the breakpoints of chr22:29025539-chr22:28269803 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 58_91 | 127.0 | 2482.0 | Repeat | Note=TPR 1 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 93_125 | 127.0 | 2482.0 | Repeat | Note=TPR 2 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 58_91 | 127.0 | 2482.0 | Repeat | Note=TPR 1 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 93_125 | 127.0 | 2482.0 | Repeat | Note=TPR 2 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 58_91 | 127.0 | 2482.0 | Repeat | Note=TPR 1 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 93_125 | 127.0 | 2482.0 | Repeat | Note=TPR 2 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1948_2006 | 127.0 | 2482.0 | Compositional bias | Note=Ser-rich |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 2201_2335 | 127.0 | 2482.0 | Compositional bias | Note=Ser-rich |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 1948_2006 | 127.0 | 2482.0 | Compositional bias | Note=Ser-rich |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 2201_2335 | 127.0 | 2482.0 | Compositional bias | Note=Ser-rich |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1948_2006 | 127.0 | 2482.0 | Compositional bias | Note=Ser-rich |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 2201_2335 | 127.0 | 2482.0 | Compositional bias | Note=Ser-rich |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1037_1070 | 127.0 | 2482.0 | Repeat | Note=TPR 25 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1077_1110 | 127.0 | 2482.0 | Repeat | Note=TPR 26 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1117_1150 | 127.0 | 2482.0 | Repeat | Note=TPR 27 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1169_1202 | 127.0 | 2482.0 | Repeat | Note=TPR 28 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 126_159 | 127.0 | 2482.0 | Repeat | Note=TPR 3 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 196_229 | 127.0 | 2482.0 | Repeat | Note=TPR 4 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 234_267 | 127.0 | 2482.0 | Repeat | Note=TPR 5 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 274_307 | 127.0 | 2482.0 | Repeat | Note=TPR 6 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 314_347 | 127.0 | 2482.0 | Repeat | Note=TPR 7 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 354_387 | 127.0 | 2482.0 | Repeat | Note=TPR 8 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 394_427 | 127.0 | 2482.0 | Repeat | Note=TPR 9 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 434_467 | 127.0 | 2482.0 | Repeat | Note=TPR 10 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 474_507 | 127.0 | 2482.0 | Repeat | Note=TPR 11 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 514_547 | 127.0 | 2482.0 | Repeat | Note=TPR 12 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 554_587 | 127.0 | 2482.0 | Repeat | Note=TPR 13 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 594_627 | 127.0 | 2482.0 | Repeat | Note=TPR 14 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 634_667 | 127.0 | 2482.0 | Repeat | Note=TPR 15 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 674_707 | 127.0 | 2482.0 | Repeat | Note=TPR 16 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 714_747 | 127.0 | 2482.0 | Repeat | Note=TPR 17 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 754_787 | 127.0 | 2482.0 | Repeat | Note=TPR 18 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 794_827 | 127.0 | 2482.0 | Repeat | Note=TPR 19 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 834_867 | 127.0 | 2482.0 | Repeat | Note=TPR 20 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 877_910 | 127.0 | 2482.0 | Repeat | Note=TPR 21 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 917_950 | 127.0 | 2482.0 | Repeat | Note=TPR 22 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 957_990 | 127.0 | 2482.0 | Repeat | Note=TPR 23 |
Hgene | TTC28 | chr22:29025539 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 997_1030 | 127.0 | 2482.0 | Repeat | Note=TPR 24 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 1037_1070 | 127.0 | 2482.0 | Repeat | Note=TPR 25 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 1077_1110 | 127.0 | 2482.0 | Repeat | Note=TPR 26 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 1117_1150 | 127.0 | 2482.0 | Repeat | Note=TPR 27 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 1169_1202 | 127.0 | 2482.0 | Repeat | Note=TPR 28 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 126_159 | 127.0 | 2482.0 | Repeat | Note=TPR 3 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 196_229 | 127.0 | 2482.0 | Repeat | Note=TPR 4 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 234_267 | 127.0 | 2482.0 | Repeat | Note=TPR 5 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 274_307 | 127.0 | 2482.0 | Repeat | Note=TPR 6 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 314_347 | 127.0 | 2482.0 | Repeat | Note=TPR 7 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 354_387 | 127.0 | 2482.0 | Repeat | Note=TPR 8 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 394_427 | 127.0 | 2482.0 | Repeat | Note=TPR 9 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 434_467 | 127.0 | 2482.0 | Repeat | Note=TPR 10 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 474_507 | 127.0 | 2482.0 | Repeat | Note=TPR 11 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 514_547 | 127.0 | 2482.0 | Repeat | Note=TPR 12 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 554_587 | 127.0 | 2482.0 | Repeat | Note=TPR 13 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 594_627 | 127.0 | 2482.0 | Repeat | Note=TPR 14 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 634_667 | 127.0 | 2482.0 | Repeat | Note=TPR 15 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 674_707 | 127.0 | 2482.0 | Repeat | Note=TPR 16 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 714_747 | 127.0 | 2482.0 | Repeat | Note=TPR 17 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 754_787 | 127.0 | 2482.0 | Repeat | Note=TPR 18 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 794_827 | 127.0 | 2482.0 | Repeat | Note=TPR 19 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 834_867 | 127.0 | 2482.0 | Repeat | Note=TPR 20 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 877_910 | 127.0 | 2482.0 | Repeat | Note=TPR 21 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 917_950 | 127.0 | 2482.0 | Repeat | Note=TPR 22 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 957_990 | 127.0 | 2482.0 | Repeat | Note=TPR 23 |
Hgene | TTC28 | chr22:29025540 | chr22:28256229 | ENST00000397906 | - | 2 | 23 | 997_1030 | 127.0 | 2482.0 | Repeat | Note=TPR 24 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1037_1070 | 127.0 | 2482.0 | Repeat | Note=TPR 25 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1077_1110 | 127.0 | 2482.0 | Repeat | Note=TPR 26 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1117_1150 | 127.0 | 2482.0 | Repeat | Note=TPR 27 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 1169_1202 | 127.0 | 2482.0 | Repeat | Note=TPR 28 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 126_159 | 127.0 | 2482.0 | Repeat | Note=TPR 3 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 196_229 | 127.0 | 2482.0 | Repeat | Note=TPR 4 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 234_267 | 127.0 | 2482.0 | Repeat | Note=TPR 5 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 274_307 | 127.0 | 2482.0 | Repeat | Note=TPR 6 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 314_347 | 127.0 | 2482.0 | Repeat | Note=TPR 7 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 354_387 | 127.0 | 2482.0 | Repeat | Note=TPR 8 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 394_427 | 127.0 | 2482.0 | Repeat | Note=TPR 9 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 434_467 | 127.0 | 2482.0 | Repeat | Note=TPR 10 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 474_507 | 127.0 | 2482.0 | Repeat | Note=TPR 11 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 514_547 | 127.0 | 2482.0 | Repeat | Note=TPR 12 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 554_587 | 127.0 | 2482.0 | Repeat | Note=TPR 13 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 594_627 | 127.0 | 2482.0 | Repeat | Note=TPR 14 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 634_667 | 127.0 | 2482.0 | Repeat | Note=TPR 15 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 674_707 | 127.0 | 2482.0 | Repeat | Note=TPR 16 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 714_747 | 127.0 | 2482.0 | Repeat | Note=TPR 17 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 754_787 | 127.0 | 2482.0 | Repeat | Note=TPR 18 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 794_827 | 127.0 | 2482.0 | Repeat | Note=TPR 19 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 834_867 | 127.0 | 2482.0 | Repeat | Note=TPR 20 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 877_910 | 127.0 | 2482.0 | Repeat | Note=TPR 21 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 917_950 | 127.0 | 2482.0 | Repeat | Note=TPR 22 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 957_990 | 127.0 | 2482.0 | Repeat | Note=TPR 23 |
Hgene | TTC28 | chr22:29025540 | chr22:28269803 | ENST00000397906 | - | 2 | 23 | 997_1030 | 127.0 | 2482.0 | Repeat | Note=TPR 24 |
Top |
Fusion Gene Sequence for TTC28-PITPNB |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000397906_ENST00000335272_TCGA-DD-A1EB_TTC28_chr22_29025539_-_PITPNB_chr22_28269803_length(transcript)=2916nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGACTACAAAGCTGATGA AGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCC CCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAA ACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGA CGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGG TCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTA TCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTATATATGTATGTGT GCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATACAGACATACTGA AGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAACAGAT TTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGTGGAC CAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAGTAGACTCCCACA GAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTCTGGATGGTCATT ATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTTTAAA AAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGTTTCT GATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCTGTGT AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTATGCAAATGGTCT AGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGA CTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG TGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTTTTTA ATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGT CAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAAACACGCC AACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTC CCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAA CCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATA ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTTAATGAACTTAAC TCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTTTTCTAACAACTG TGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAATGAA >In-frame_ENST00000397906_ENST00000335272_TCGA-DD-A1EB_TTC28_chr22_29025539_-_PITPNB_chr22_28269803_length(amino acids)=262AA_start in transcript=94_stop in transcript=882 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKDYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQ -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000320996_TCGA-DD-A1EB_TTC28_chr22_29025539_-_PITPNB_chr22_28269803_length(transcript)=2829nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGACTACAAAGCTGATGA AGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCC CCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAA ACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGA CGAGACTCAGAAAGAACTAGAAACATTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACC AGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTATATATGTAT GTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATACAGACATA CTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAAC AGATTTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGT GGACCAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAGTAGACTCC CACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTCTGGATGGT CATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTT TAAAAAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGT TTCTGATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCT GTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTATGCAAATG GTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATA GTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTG ACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTT TTTAATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTTTTTCCT CTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAAACA CGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATC CCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAAC AAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAG CATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTTAATGAACT TAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTTTTCTAACA ACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAA >In-frame_ENST00000397906_ENST00000320996_TCGA-DD-A1EB_TTC28_chr22_29025539_-_PITPNB_chr22_28269803_length(amino acids)=263AA_start in transcript=94_stop in transcript=885 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKDYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQ -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000455418_TCGA-DD-A1EB_TTC28_chr22_29025539_-_PITPNB_chr22_28269803_length(transcript)=2913nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGACTACAAAGCTGATGA AGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCC CCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAA ACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGA CGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGG TCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTA TCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTATATATGTATGTGT GCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATACAGACATACTGA AGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAACAGAT TTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGTGGAC CAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAGTAGACTCCCACA GAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTCTGGATGGTCATT ATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTTTAAA AAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGTTTCT GATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCTGTGT AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTATGCAAATGGTCT AGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGA CTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG TGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTTTTTA ATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGT CAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAAACACGCC AACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTC CCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAA CCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATA ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTTAATGAACTTAAC TCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTTTTCTAACAACTG TGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAATGAA >In-frame_ENST00000397906_ENST00000455418_TCGA-DD-A1EB_TTC28_chr22_29025539_-_PITPNB_chr22_28269803_length(amino acids)=262AA_start in transcript=94_stop in transcript=882 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKDYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQ -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000335272_TCGA-DD-A1EB-01A_TTC28_chr22_29025540_-_PITPNB_chr22_28269803_length(transcript)=2916nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGACTACAAAGCTGATGA AGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCC CCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAA ACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGA CGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGG TCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTA TCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTATATATGTATGTGT GCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATACAGACATACTGA AGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAACAGAT TTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGTGGAC CAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAGTAGACTCCCACA GAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTCTGGATGGTCATT ATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTTTAAA AAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGTTTCT GATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCTGTGT AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTATGCAAATGGTCT AGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGA CTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG TGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTTTTTA ATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGT CAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAAACACGCC AACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTC CCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAA CCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATA ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTTAATGAACTTAAC TCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTTTTCTAACAACTG TGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAATGAA >In-frame_ENST00000397906_ENST00000335272_TCGA-DD-A1EB-01A_TTC28_chr22_29025540_-_PITPNB_chr22_28269803_length(amino acids)=262AA_start in transcript=94_stop in transcript=882 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKDYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQ -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000320996_TCGA-DD-A1EB-01A_TTC28_chr22_29025540_-_PITPNB_chr22_28269803_length(transcript)=2829nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGACTACAAAGCTGATGA AGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCC CCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAA ACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGA CGAGACTCAGAAAGAACTAGAAACATTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACC AGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTATATATGTAT GTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATACAGACATA CTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAAC AGATTTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGT GGACCAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAGTAGACTCC CACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTCTGGATGGT CATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTT TAAAAAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGT TTCTGATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCT GTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTATGCAAATG GTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATA GTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTG ACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTT TTTAATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTTTTTCCT CTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAAACA CGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATC CCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAAC AAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAG CATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTTAATGAACT TAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTTTTCTAACA ACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAA >In-frame_ENST00000397906_ENST00000320996_TCGA-DD-A1EB-01A_TTC28_chr22_29025540_-_PITPNB_chr22_28269803_length(amino acids)=263AA_start in transcript=94_stop in transcript=885 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKDYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQ -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000455418_TCGA-DD-A1EB-01A_TTC28_chr22_29025540_-_PITPNB_chr22_28269803_length(transcript)=2913nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGACTACAAAGCTGATGA AGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCC CCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAA ACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGA CGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGG TCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTA TCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTATATATGTATGTGT GCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATACAGACATACTGA AGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAACAGAT TTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGTGGAC CAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAGTAGACTCCCACA GAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTCTGGATGGTCATT ATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTTTAAA AAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGTTTCT GATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTAGGCTGTGT AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTATGCAAATGGTCT AGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGA CTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG TGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTTTTTA ATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGT CAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAAACACGCC AACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTC CCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAA CCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATA ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTTAATGAACTTAAC TCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTTTTCTAACAACTG TGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAATGAA >In-frame_ENST00000397906_ENST00000455418_TCGA-DD-A1EB-01A_TTC28_chr22_29025540_-_PITPNB_chr22_28269803_length(amino acids)=262AA_start in transcript=94_stop in transcript=882 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKDYKADEDPALFQSVKTKRGPLGPNWKKELANSPDCPQ -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000335272_TCGA-77-7141_TTC28_chr22_29025540_-_PITPNB_chr22_28256229_length(transcript)=2838nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGAAGGAGCTGGCAAACAG CCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCA AAAGCAAGAAAAACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAG GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAG TCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGA ATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTAT ATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATA CAGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATA CCTGGAACAGATTTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGT CAAGCTGTGGACCAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAG TAGACTCCCACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTC TGGATGGTCATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAA AATCCTTTTAAAAAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAG ATGACGGTTTCTGATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGAT TGTAGGCTGTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTA TGCAAATGGTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGG AGGAGATAGTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTG GACATCTGACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTG CCACTTTTTTTAATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAG TTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTC CTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGT CCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCC TCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTT TGTCAGAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTT AATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTT TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAAC >In-frame_ENST00000397906_ENST00000335272_TCGA-77-7141_TTC28_chr22_29025540_-_PITPNB_chr22_28256229_length(amino acids)=236AA_start in transcript=94_stop in transcript=804 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQK -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000320996_TCGA-77-7141_TTC28_chr22_29025540_-_PITPNB_chr22_28256229_length(transcript)=2751nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGAAGGAGCTGGCAAACAG CCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCA AAAGCAAGAAAAACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAG GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACATTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAG AAGAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGT GTATATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTA CATACAGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATA TATACCTGGAACAGATTTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAA ATGTCAAGCTGTGGACCAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAA GCAGTAGACTCCCACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTA TTTCTGGATGGTCATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGG GAAAAATCCTTTTAAAAAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAAT GGAGATGACGGTTTCTGATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATA GGATTGTAGGCTGTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAA ACTATGCAAATGGTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTC AAGGAGGAGATAGTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACT GGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACG GCTGCCACTTTTTTTAATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAAT CCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTC CCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCAC ATGTCCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTT ATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAG GTTTTGTCAGAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCC TTTTAATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAAT GTTTTTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTA >In-frame_ENST00000397906_ENST00000320996_TCGA-77-7141_TTC28_chr22_29025540_-_PITPNB_chr22_28256229_length(amino acids)=237AA_start in transcript=94_stop in transcript=807 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQK -------------------------------------------------------------- >In-frame_ENST00000397906_ENST00000455418_TCGA-77-7141_TTC28_chr22_29025540_-_PITPNB_chr22_28256229_length(transcript)=2835nt_BP=523nt GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGAAGGAGCTGGCAAACAG CCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCA AAAGCAAGAAAAACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAG GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAG TCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGA ATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTCTCAACCACGTGTGTAT ATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTGTGTATATATGTACATA CAGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATA CCTGGAACAGATTTTAATAATTATCAGAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGT CAAGCTGTGGACCAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCATAAGCAG TAGACTCCCACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAATGTATTTATAACTATTTATTTC TGGATGGTCATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAA AATCCTTTTAAAAAAAATTTCTGGTTTTTATTGGATTTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAG ATGACGGTTTCTGATTTATAATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGAT TGTAGGCTGTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACAGCTTGGAAACTA TGCAAATGGTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGG AGGAGATAGTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTG GACATCTGACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTG CCACTTTTTTTAATTTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCCAG TTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTC CTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGT CCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCC TCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTT TGTCAGAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCTCTCCTTTT AATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGATTTTAATGTTT TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAAC >In-frame_ENST00000397906_ENST00000455418_TCGA-77-7141_TTC28_chr22_29025540_-_PITPNB_chr22_28256229_length(amino acids)=236AA_start in transcript=94_stop in transcript=804 MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for TTC28-PITPNB |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for TTC28-PITPNB |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for TTC28-PITPNB |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TTC28 | C2931456 | Prostate cancer, familial | 1 | CTD_human |
Hgene | TTC28 | C4722327 | PROSTATE CANCER, HEREDITARY, 1 | 1 | CTD_human |